Multiple sequence alignment - TraesCS5D01G204000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G204000 chr5D 100.000 9908 0 0 1 9908 309059020 309049113 0.000000e+00 18297.0
1 TraesCS5D01G204000 chr5D 85.950 605 46 19 9341 9906 352447832 352447228 2.370000e-170 610.0
2 TraesCS5D01G204000 chr5D 87.898 471 48 4 1 467 458170838 458170373 6.770000e-151 545.0
3 TraesCS5D01G204000 chr5D 87.471 431 21 16 9491 9906 361601857 361601445 5.420000e-127 466.0
4 TraesCS5D01G204000 chr5A 96.587 5596 121 25 1148 6697 389052816 389058387 0.000000e+00 9212.0
5 TraesCS5D01G204000 chr5A 95.670 2402 58 10 6856 9214 389058386 389060784 0.000000e+00 3818.0
6 TraesCS5D01G204000 chr5A 86.078 589 58 9 9342 9906 426354905 426355493 6.580000e-171 612.0
7 TraesCS5D01G204000 chr5A 85.386 609 47 19 9334 9906 605065370 605064768 2.380000e-165 593.0
8 TraesCS5D01G204000 chr5A 85.142 599 53 12 9343 9906 555176708 555177305 1.860000e-161 580.0
9 TraesCS5D01G204000 chr5A 84.333 600 57 13 9342 9906 24856627 24857224 4.040000e-153 553.0
10 TraesCS5D01G204000 chr5A 95.882 340 11 2 794 1130 389052170 389052509 1.880000e-151 547.0
11 TraesCS5D01G204000 chr5A 100.000 96 0 0 9211 9306 389060816 389060911 2.840000e-40 178.0
12 TraesCS5D01G204000 chr5A 85.185 54 6 2 3960 4013 384630672 384630621 5.000000e-03 54.7
13 TraesCS5D01G204000 chr5B 95.294 3740 84 24 2985 6697 354299294 354295620 0.000000e+00 5847.0
14 TraesCS5D01G204000 chr5B 95.380 2013 75 11 829 2827 354301672 354299664 0.000000e+00 3186.0
15 TraesCS5D01G204000 chr5B 95.084 1729 73 4 6856 8577 354295621 354293898 0.000000e+00 2712.0
16 TraesCS5D01G204000 chr5B 88.006 617 24 16 8639 9214 354293443 354292836 0.000000e+00 684.0
17 TraesCS5D01G204000 chr5B 84.738 439 54 9 1 434 641408295 641408725 2.560000e-115 427.0
18 TraesCS5D01G204000 chr5B 86.392 316 27 12 486 793 641409254 641409561 2.060000e-86 331.0
19 TraesCS5D01G204000 chr5B 98.305 177 3 0 2823 2999 354299585 354299409 2.690000e-80 311.0
20 TraesCS5D01G204000 chr5B 96.970 99 3 0 9211 9309 354292804 354292706 6.160000e-37 167.0
21 TraesCS5D01G204000 chr6D 87.234 611 44 16 9328 9906 409489600 409490208 0.000000e+00 665.0
22 TraesCS5D01G204000 chr6D 88.662 441 39 6 1 434 301759238 301759674 2.450000e-145 527.0
23 TraesCS5D01G204000 chr6D 87.812 320 25 12 485 793 301761296 301761612 7.310000e-96 363.0
24 TraesCS5D01G204000 chr6D 88.688 221 23 2 30 249 4901235 4901454 1.640000e-67 268.0
25 TraesCS5D01G204000 chr7A 85.832 607 41 26 9337 9906 2576768 2576170 3.960000e-168 603.0
26 TraesCS5D01G204000 chr1A 84.072 609 41 33 9332 9906 471796316 471795730 4.070000e-148 536.0
27 TraesCS5D01G204000 chr2D 89.258 391 16 8 9541 9906 485456398 485456787 5.420000e-127 466.0
28 TraesCS5D01G204000 chr2D 95.210 167 8 0 6696 6862 71262199 71262033 2.120000e-66 265.0
29 TraesCS5D01G204000 chr2D 94.578 166 9 0 6696 6861 305515030 305514865 3.550000e-64 257.0
30 TraesCS5D01G204000 chr1D 86.036 444 44 10 9328 9756 19457409 19457849 2.520000e-125 460.0
31 TraesCS5D01G204000 chrUn 85.169 445 54 8 31 467 2889455 2889015 7.060000e-121 446.0
32 TraesCS5D01G204000 chrUn 85.768 267 25 11 536 794 2782249 2781988 4.560000e-68 270.0
33 TraesCS5D01G204000 chr7D 93.822 259 15 1 9648 9906 3746203 3745946 1.210000e-103 388.0
34 TraesCS5D01G204000 chr7D 95.266 169 8 0 6694 6862 94439078 94439246 1.640000e-67 268.0
35 TraesCS5D01G204000 chr3A 88.571 315 33 2 9330 9644 663442909 663443220 7.260000e-101 379.0
36 TraesCS5D01G204000 chr7B 83.257 436 45 13 1 434 435038043 435037634 9.400000e-100 375.0
37 TraesCS5D01G204000 chr7B 92.664 259 18 1 9648 9906 713747821 713748078 1.220000e-98 372.0
38 TraesCS5D01G204000 chr7B 90.370 270 24 1 200 467 655792615 655792884 4.400000e-93 353.0
39 TraesCS5D01G204000 chr7B 90.421 261 22 1 200 457 655703049 655703309 3.430000e-89 340.0
40 TraesCS5D01G204000 chr7B 86.392 316 31 9 486 793 657556988 657556677 1.590000e-87 335.0
41 TraesCS5D01G204000 chr7B 88.889 270 27 2 200 467 655661250 655661518 7.420000e-86 329.0
42 TraesCS5D01G204000 chr7B 88.148 270 29 2 200 467 655687382 655687650 1.610000e-82 318.0
43 TraesCS5D01G204000 chr7B 88.618 246 19 8 555 793 641755732 641755489 3.500000e-74 291.0
44 TraesCS5D01G204000 chr7B 95.238 168 5 2 6696 6861 516791925 516791759 7.630000e-66 263.0
45 TraesCS5D01G204000 chr7B 91.489 188 11 5 6672 6857 74657972 74658156 4.590000e-63 254.0
46 TraesCS5D01G204000 chr3B 92.664 259 18 1 9648 9906 2181659 2181916 1.220000e-98 372.0
47 TraesCS5D01G204000 chr3B 86.713 286 23 15 491 764 749716586 749716304 4.500000e-78 303.0
48 TraesCS5D01G204000 chr3B 95.181 166 8 0 6695 6860 540175091 540174926 7.630000e-66 263.0
49 TraesCS5D01G204000 chr6B 92.278 259 19 1 9648 9906 32292435 32292692 5.650000e-97 366.0
50 TraesCS5D01G204000 chr6B 88.136 236 21 7 536 764 682124909 682124674 3.530000e-69 274.0
51 TraesCS5D01G204000 chr2B 83.459 399 50 11 1 392 11319801 11320190 3.400000e-94 357.0
52 TraesCS5D01G204000 chr2B 86.792 265 24 10 536 792 11320926 11321187 1.630000e-72 285.0
53 TraesCS5D01G204000 chr2B 78.190 431 65 24 248 668 510886432 510886843 2.140000e-61 248.0
54 TraesCS5D01G204000 chr3D 96.296 162 6 0 6696 6857 410670224 410670063 5.900000e-67 267.0
55 TraesCS5D01G204000 chr3D 94.152 171 8 2 6689 6858 507038749 507038580 9.870000e-65 259.0
56 TraesCS5D01G204000 chr2A 93.678 174 10 1 6690 6862 460903996 460904169 9.870000e-65 259.0
57 TraesCS5D01G204000 chr2A 95.000 40 2 0 3946 3985 127207418 127207379 8.310000e-06 63.9
58 TraesCS5D01G204000 chr1B 78.571 364 44 31 453 798 108553922 108553575 1.010000e-49 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G204000 chr5D 309049113 309059020 9907 True 18297.000000 18297 100.000000 1 9908 1 chr5D.!!$R1 9907
1 TraesCS5D01G204000 chr5D 352447228 352447832 604 True 610.000000 610 85.950000 9341 9906 1 chr5D.!!$R2 565
2 TraesCS5D01G204000 chr5A 389052170 389060911 8741 False 3438.750000 9212 97.034750 794 9306 4 chr5A.!!$F4 8512
3 TraesCS5D01G204000 chr5A 426354905 426355493 588 False 612.000000 612 86.078000 9342 9906 1 chr5A.!!$F2 564
4 TraesCS5D01G204000 chr5A 605064768 605065370 602 True 593.000000 593 85.386000 9334 9906 1 chr5A.!!$R2 572
5 TraesCS5D01G204000 chr5A 555176708 555177305 597 False 580.000000 580 85.142000 9343 9906 1 chr5A.!!$F3 563
6 TraesCS5D01G204000 chr5A 24856627 24857224 597 False 553.000000 553 84.333000 9342 9906 1 chr5A.!!$F1 564
7 TraesCS5D01G204000 chr5B 354292706 354301672 8966 True 2151.166667 5847 94.839833 829 9309 6 chr5B.!!$R1 8480
8 TraesCS5D01G204000 chr5B 641408295 641409561 1266 False 379.000000 427 85.565000 1 793 2 chr5B.!!$F1 792
9 TraesCS5D01G204000 chr6D 409489600 409490208 608 False 665.000000 665 87.234000 9328 9906 1 chr6D.!!$F2 578
10 TraesCS5D01G204000 chr6D 301759238 301761612 2374 False 445.000000 527 88.237000 1 793 2 chr6D.!!$F3 792
11 TraesCS5D01G204000 chr7A 2576170 2576768 598 True 603.000000 603 85.832000 9337 9906 1 chr7A.!!$R1 569
12 TraesCS5D01G204000 chr1A 471795730 471796316 586 True 536.000000 536 84.072000 9332 9906 1 chr1A.!!$R1 574
13 TraesCS5D01G204000 chr2B 11319801 11321187 1386 False 321.000000 357 85.125500 1 792 2 chr2B.!!$F2 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 1275 0.314935 CCATGTTTTGTCGCTGGCTT 59.685 50.000 0.00 0.0 0.00 4.35 F
737 1277 0.314935 ATGTTTTGTCGCTGGCTTGG 59.685 50.000 0.00 0.0 0.00 3.61 F
789 1329 0.743345 GCGAGCGTCCAATAGGGTTT 60.743 55.000 0.00 0.0 38.11 3.27 F
1247 2085 1.074850 CCCTCTCCCTCCCTTCCTC 60.075 68.421 0.00 0.0 0.00 3.71 F
1977 2821 1.351076 TGGTTGAGCTGGATGAGACA 58.649 50.000 0.00 0.0 0.00 3.41 F
3322 4381 1.130054 AGAGCTGGGCAAGAACCTGA 61.130 55.000 0.00 0.0 0.00 3.86 F
3888 4977 0.777446 TGCTTTCCTTTGCCCTAGGT 59.223 50.000 8.29 0.0 34.29 3.08 F
5075 6600 1.875009 CTGTGTTTCAGCAGCTCTCA 58.125 50.000 0.00 0.0 37.36 3.27 F
5464 6989 1.442769 AATCGCAAGCACTCGTTCAT 58.557 45.000 0.00 0.0 37.18 2.57 F
7080 8605 0.187606 GGTTTTTGGGAGGGTGGTCT 59.812 55.000 0.00 0.0 0.00 3.85 F
8561 10103 3.403038 ACTTCTAGAATTGTTGTGCGCT 58.597 40.909 9.73 0.0 0.00 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 2482 1.867615 CTGTGAGAGCTTGCACTGC 59.132 57.895 17.32 2.91 36.05 4.40 R
2676 3523 2.814336 CCTTGCTTCTGTTGGTACCTTC 59.186 50.000 14.36 6.70 0.00 3.46 R
2805 3652 4.852134 TGTACATGCAAAACAGAGCAAT 57.148 36.364 0.00 0.00 44.88 3.56 R
3234 4293 3.055963 CCACCTTGCAGATAAAATTGGCA 60.056 43.478 0.00 0.00 0.00 4.92 R
3858 4931 2.234300 AGGAAAGCAGAAACGACGAA 57.766 45.000 0.00 0.00 0.00 3.85 R
4276 5385 1.466856 ATCACGGCATGCATCACTTT 58.533 45.000 21.36 0.00 0.00 2.66 R
5448 6973 0.235665 AACATGAACGAGTGCTTGCG 59.764 50.000 0.00 0.00 0.00 4.85 R
5943 7468 0.243636 CCACCCGCAATGAAGAAACC 59.756 55.000 0.00 0.00 0.00 3.27 R
7152 8678 1.003116 GCTGCATATCAAGTTCCTGCG 60.003 52.381 0.00 0.00 35.63 5.18 R
8650 10509 0.531090 TCGTTCAACACCAACCCGAG 60.531 55.000 0.00 0.00 0.00 4.63 R
9690 11745 1.378762 CCACCGGAGAACAACCCAT 59.621 57.895 9.46 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 34 3.063743 GCAAAAAGGGGCGCGCTAT 62.064 57.895 32.29 14.40 0.00 2.97
41 47 1.979469 CGCGCTATGTAGGAATCGAAG 59.021 52.381 5.56 0.00 0.00 3.79
48 54 1.135199 TGTAGGAATCGAAGTCGCCAC 60.135 52.381 0.00 0.00 39.60 5.01
64 71 2.036475 CGCCACACTTCTATAGATGCCT 59.964 50.000 14.02 0.00 0.00 4.75
89 96 3.838795 GCAAGCCACTACGACGCG 61.839 66.667 3.53 3.53 0.00 6.01
100 107 3.302808 CGACGCGCGTGCTACTAC 61.303 66.667 42.90 22.72 39.65 2.73
131 138 1.525197 CAGCGCGACACTTAAAGAACA 59.475 47.619 12.10 0.00 0.00 3.18
132 139 2.033236 CAGCGCGACACTTAAAGAACAA 60.033 45.455 12.10 0.00 0.00 2.83
163 173 5.389411 GCCATGAAAATAAAACAAGTTCGCC 60.389 40.000 0.00 0.00 0.00 5.54
170 180 8.432110 AAAATAAAACAAGTTCGCCAAATTCT 57.568 26.923 0.00 0.00 0.00 2.40
434 470 6.254589 TGAAACGAGCGAACAAATTTTGAAAT 59.745 30.769 15.81 1.87 0.00 2.17
435 471 6.582437 AACGAGCGAACAAATTTTGAAATT 57.418 29.167 15.81 0.00 40.15 1.82
436 472 6.582437 ACGAGCGAACAAATTTTGAAATTT 57.418 29.167 15.81 8.27 46.42 1.82
620 1160 7.790782 AAATAATAGAAAGCCAGGAAAACCA 57.209 32.000 0.00 0.00 0.00 3.67
621 1161 7.410120 AATAATAGAAAGCCAGGAAAACCAG 57.590 36.000 0.00 0.00 0.00 4.00
622 1162 4.657814 ATAGAAAGCCAGGAAAACCAGA 57.342 40.909 0.00 0.00 0.00 3.86
623 1163 3.312736 AGAAAGCCAGGAAAACCAGAA 57.687 42.857 0.00 0.00 0.00 3.02
624 1164 3.642141 AGAAAGCCAGGAAAACCAGAAA 58.358 40.909 0.00 0.00 0.00 2.52
625 1165 3.638627 AGAAAGCCAGGAAAACCAGAAAG 59.361 43.478 0.00 0.00 0.00 2.62
626 1166 3.312736 AAGCCAGGAAAACCAGAAAGA 57.687 42.857 0.00 0.00 0.00 2.52
627 1167 3.312736 AGCCAGGAAAACCAGAAAGAA 57.687 42.857 0.00 0.00 0.00 2.52
628 1168 3.849527 AGCCAGGAAAACCAGAAAGAAT 58.150 40.909 0.00 0.00 0.00 2.40
629 1169 3.829026 AGCCAGGAAAACCAGAAAGAATC 59.171 43.478 0.00 0.00 0.00 2.52
630 1170 3.573967 GCCAGGAAAACCAGAAAGAATCA 59.426 43.478 0.00 0.00 0.00 2.57
631 1171 4.039124 GCCAGGAAAACCAGAAAGAATCAA 59.961 41.667 0.00 0.00 0.00 2.57
632 1172 5.453198 GCCAGGAAAACCAGAAAGAATCAAA 60.453 40.000 0.00 0.00 0.00 2.69
633 1173 6.581712 CCAGGAAAACCAGAAAGAATCAAAA 58.418 36.000 0.00 0.00 0.00 2.44
634 1174 6.479990 CCAGGAAAACCAGAAAGAATCAAAAC 59.520 38.462 0.00 0.00 0.00 2.43
635 1175 7.041107 CAGGAAAACCAGAAAGAATCAAAACA 58.959 34.615 0.00 0.00 0.00 2.83
636 1176 7.548780 CAGGAAAACCAGAAAGAATCAAAACAA 59.451 33.333 0.00 0.00 0.00 2.83
637 1177 7.765819 AGGAAAACCAGAAAGAATCAAAACAAG 59.234 33.333 0.00 0.00 0.00 3.16
638 1178 7.763985 GGAAAACCAGAAAGAATCAAAACAAGA 59.236 33.333 0.00 0.00 0.00 3.02
639 1179 9.150348 GAAAACCAGAAAGAATCAAAACAAGAA 57.850 29.630 0.00 0.00 0.00 2.52
640 1180 9.500785 AAAACCAGAAAGAATCAAAACAAGAAA 57.499 25.926 0.00 0.00 0.00 2.52
641 1181 9.500785 AAACCAGAAAGAATCAAAACAAGAAAA 57.499 25.926 0.00 0.00 0.00 2.29
642 1182 9.500785 AACCAGAAAGAATCAAAACAAGAAAAA 57.499 25.926 0.00 0.00 0.00 1.94
643 1183 9.671279 ACCAGAAAGAATCAAAACAAGAAAAAT 57.329 25.926 0.00 0.00 0.00 1.82
646 1186 9.330063 AGAAAGAATCAAAACAAGAAAAATCCC 57.670 29.630 0.00 0.00 0.00 3.85
647 1187 7.713764 AAGAATCAAAACAAGAAAAATCCCG 57.286 32.000 0.00 0.00 0.00 5.14
648 1188 6.223120 AGAATCAAAACAAGAAAAATCCCGG 58.777 36.000 0.00 0.00 0.00 5.73
649 1189 5.545063 ATCAAAACAAGAAAAATCCCGGT 57.455 34.783 0.00 0.00 0.00 5.28
650 1190 5.346181 TCAAAACAAGAAAAATCCCGGTT 57.654 34.783 0.00 0.00 0.00 4.44
651 1191 5.735766 TCAAAACAAGAAAAATCCCGGTTT 58.264 33.333 0.00 0.00 0.00 3.27
652 1192 6.875076 TCAAAACAAGAAAAATCCCGGTTTA 58.125 32.000 0.00 0.00 0.00 2.01
653 1193 6.981559 TCAAAACAAGAAAAATCCCGGTTTAG 59.018 34.615 0.00 0.00 0.00 1.85
654 1194 5.462530 AACAAGAAAAATCCCGGTTTAGG 57.537 39.130 0.00 0.00 0.00 2.69
701 1241 5.324739 CGTTTGGACGGATTGTGTATATC 57.675 43.478 0.00 0.00 45.32 1.63
702 1242 5.047847 CGTTTGGACGGATTGTGTATATCT 58.952 41.667 0.00 0.00 45.32 1.98
703 1243 5.051039 CGTTTGGACGGATTGTGTATATCTG 60.051 44.000 0.00 0.00 45.32 2.90
704 1244 4.600692 TGGACGGATTGTGTATATCTGG 57.399 45.455 0.00 0.00 33.56 3.86
705 1245 4.219919 TGGACGGATTGTGTATATCTGGA 58.780 43.478 0.00 0.00 33.56 3.86
706 1246 4.280929 TGGACGGATTGTGTATATCTGGAG 59.719 45.833 0.00 0.00 33.56 3.86
707 1247 4.281182 GGACGGATTGTGTATATCTGGAGT 59.719 45.833 0.00 0.00 33.56 3.85
708 1248 5.201713 ACGGATTGTGTATATCTGGAGTG 57.798 43.478 0.00 0.00 33.56 3.51
709 1249 4.039245 ACGGATTGTGTATATCTGGAGTGG 59.961 45.833 0.00 0.00 33.56 4.00
710 1250 4.561530 CGGATTGTGTATATCTGGAGTGGG 60.562 50.000 0.00 0.00 0.00 4.61
711 1251 3.838244 TTGTGTATATCTGGAGTGGGC 57.162 47.619 0.00 0.00 0.00 5.36
712 1252 2.047061 TGTGTATATCTGGAGTGGGCC 58.953 52.381 0.00 0.00 0.00 5.80
713 1253 1.000955 GTGTATATCTGGAGTGGGCCG 59.999 57.143 0.00 0.00 0.00 6.13
714 1254 0.608640 GTATATCTGGAGTGGGCCGG 59.391 60.000 0.00 0.00 35.54 6.13
715 1255 1.192146 TATATCTGGAGTGGGCCGGC 61.192 60.000 21.18 21.18 34.16 6.13
726 1266 3.310307 GGCCGGCCCATGTTTTGT 61.310 61.111 36.64 0.00 0.00 2.83
727 1267 2.261361 GCCGGCCCATGTTTTGTC 59.739 61.111 18.11 0.00 0.00 3.18
728 1268 2.566010 CCGGCCCATGTTTTGTCG 59.434 61.111 0.00 0.00 0.00 4.35
729 1269 2.126502 CGGCCCATGTTTTGTCGC 60.127 61.111 0.00 0.00 0.00 5.19
730 1270 2.625823 CGGCCCATGTTTTGTCGCT 61.626 57.895 0.00 0.00 0.00 4.93
731 1271 1.080569 GGCCCATGTTTTGTCGCTG 60.081 57.895 0.00 0.00 0.00 5.18
732 1272 1.080569 GCCCATGTTTTGTCGCTGG 60.081 57.895 0.00 0.00 0.00 4.85
733 1273 1.080569 CCCATGTTTTGTCGCTGGC 60.081 57.895 0.00 0.00 0.00 4.85
734 1274 1.526575 CCCATGTTTTGTCGCTGGCT 61.527 55.000 0.00 0.00 0.00 4.75
735 1275 0.314935 CCATGTTTTGTCGCTGGCTT 59.685 50.000 0.00 0.00 0.00 4.35
736 1276 1.411394 CATGTTTTGTCGCTGGCTTG 58.589 50.000 0.00 0.00 0.00 4.01
737 1277 0.314935 ATGTTTTGTCGCTGGCTTGG 59.685 50.000 0.00 0.00 0.00 3.61
738 1278 1.661509 GTTTTGTCGCTGGCTTGGC 60.662 57.895 0.00 0.00 0.00 4.52
739 1279 1.827789 TTTTGTCGCTGGCTTGGCT 60.828 52.632 0.00 0.00 0.00 4.75
740 1280 2.074230 TTTTGTCGCTGGCTTGGCTG 62.074 55.000 0.00 0.00 0.00 4.85
745 1285 3.441290 GCTGGCTTGGCTGCTCTG 61.441 66.667 16.29 0.00 0.00 3.35
746 1286 2.033757 CTGGCTTGGCTGCTCTGT 59.966 61.111 0.00 0.00 0.00 3.41
747 1287 2.281970 TGGCTTGGCTGCTCTGTG 60.282 61.111 0.00 0.00 0.00 3.66
748 1288 3.745803 GGCTTGGCTGCTCTGTGC 61.746 66.667 0.00 0.00 43.25 4.57
749 1289 4.099170 GCTTGGCTGCTCTGTGCG 62.099 66.667 0.00 0.00 46.63 5.34
750 1290 2.357881 CTTGGCTGCTCTGTGCGA 60.358 61.111 0.00 0.00 46.63 5.10
751 1291 1.744368 CTTGGCTGCTCTGTGCGAT 60.744 57.895 0.00 0.00 46.63 4.58
752 1292 1.703438 CTTGGCTGCTCTGTGCGATC 61.703 60.000 0.00 0.00 46.63 3.69
753 1293 3.260483 GGCTGCTCTGTGCGATCG 61.260 66.667 11.69 11.69 46.63 3.69
754 1294 3.922893 GCTGCTCTGTGCGATCGC 61.923 66.667 32.48 32.48 46.63 4.58
755 1295 3.260483 CTGCTCTGTGCGATCGCC 61.260 66.667 35.12 25.81 46.63 5.54
756 1296 4.819761 TGCTCTGTGCGATCGCCC 62.820 66.667 35.12 26.20 46.63 6.13
758 1298 4.193334 CTCTGTGCGATCGCCCGA 62.193 66.667 35.12 25.36 41.09 5.14
759 1299 4.492160 TCTGTGCGATCGCCCGAC 62.492 66.667 35.12 26.48 41.09 4.79
760 1300 4.794439 CTGTGCGATCGCCCGACA 62.794 66.667 35.12 29.24 41.09 4.35
762 1302 4.796231 GTGCGATCGCCCGACACT 62.796 66.667 35.12 0.00 41.09 3.55
763 1303 4.063967 TGCGATCGCCCGACACTT 62.064 61.111 35.12 0.00 41.09 3.16
764 1304 3.554692 GCGATCGCCCGACACTTG 61.555 66.667 29.48 0.00 34.56 3.16
765 1305 2.126071 CGATCGCCCGACACTTGT 60.126 61.111 0.26 0.00 0.00 3.16
766 1306 2.158959 CGATCGCCCGACACTTGTC 61.159 63.158 0.26 0.00 41.47 3.18
774 1314 3.150895 GACACTTGTCGCAGCGAG 58.849 61.111 20.23 9.59 36.23 5.03
775 1315 3.004734 GACACTTGTCGCAGCGAGC 62.005 63.158 20.23 13.74 36.23 5.03
784 1324 3.313750 GCAGCGAGCGTCCAATAG 58.686 61.111 0.00 0.00 0.00 1.73
785 1325 2.240500 GCAGCGAGCGTCCAATAGG 61.241 63.158 0.00 0.00 0.00 2.57
786 1326 1.592669 CAGCGAGCGTCCAATAGGG 60.593 63.158 0.00 0.00 34.83 3.53
787 1327 2.058595 AGCGAGCGTCCAATAGGGT 61.059 57.895 0.00 0.00 38.11 4.34
788 1328 1.153429 GCGAGCGTCCAATAGGGTT 60.153 57.895 0.00 0.00 38.11 4.11
789 1329 0.743345 GCGAGCGTCCAATAGGGTTT 60.743 55.000 0.00 0.00 38.11 3.27
790 1330 1.734163 CGAGCGTCCAATAGGGTTTT 58.266 50.000 0.00 0.00 38.11 2.43
791 1331 1.664151 CGAGCGTCCAATAGGGTTTTC 59.336 52.381 0.00 0.00 38.11 2.29
792 1332 2.014857 GAGCGTCCAATAGGGTTTTCC 58.985 52.381 0.00 0.00 38.11 3.13
811 1351 7.174772 GGTTTTCCCGTCTATACTGGTTAAAAA 59.825 37.037 0.00 0.00 32.15 1.94
812 1352 7.910441 TTTCCCGTCTATACTGGTTAAAAAG 57.090 36.000 0.00 0.00 32.15 2.27
813 1353 5.981174 TCCCGTCTATACTGGTTAAAAAGG 58.019 41.667 0.00 0.00 32.15 3.11
817 1357 7.989170 CCCGTCTATACTGGTTAAAAAGGTTAT 59.011 37.037 0.00 0.00 0.00 1.89
867 1408 4.697756 TGAAACGCGAGGCCCAGG 62.698 66.667 15.93 0.00 0.00 4.45
1093 1642 1.229625 ACTGGTGCATCCTCCCTCA 60.230 57.895 0.00 0.00 37.07 3.86
1209 2047 3.039202 CTTCGCGCCAATCCCACAC 62.039 63.158 0.00 0.00 0.00 3.82
1221 2059 2.928396 CCACACCCCGTCCTCCTT 60.928 66.667 0.00 0.00 0.00 3.36
1246 2084 1.869452 ACCCTCTCCCTCCCTTCCT 60.869 63.158 0.00 0.00 0.00 3.36
1247 2085 1.074850 CCCTCTCCCTCCCTTCCTC 60.075 68.421 0.00 0.00 0.00 3.71
1248 2086 1.074850 CCTCTCCCTCCCTTCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
1563 2407 2.282674 AGGTCGGTGAGCGTGGTA 60.283 61.111 3.30 0.00 35.00 3.25
1776 2620 3.047877 CCGGTTTCTGTCACGGGC 61.048 66.667 0.00 0.00 42.48 6.13
1977 2821 1.351076 TGGTTGAGCTGGATGAGACA 58.649 50.000 0.00 0.00 0.00 3.41
2089 2933 7.277539 TGAACTTTCGTTTGCAATTTCTTCATT 59.722 29.630 0.00 0.00 32.39 2.57
2092 2936 8.116136 ACTTTCGTTTGCAATTTCTTCATTTTC 58.884 29.630 0.00 0.00 0.00 2.29
2211 3058 3.382227 TGGACGACAGTTGTTCTACTTGA 59.618 43.478 0.55 0.00 0.00 3.02
2275 3122 2.094182 GGTGGACTCGAAGTAAGATGCA 60.094 50.000 0.00 0.00 0.00 3.96
2283 3130 5.527582 ACTCGAAGTAAGATGCAACTTTTGT 59.472 36.000 14.90 5.79 36.10 2.83
2351 3198 2.989909 TGGTGCAGATGTCATACAAGG 58.010 47.619 0.00 0.00 0.00 3.61
2352 3199 2.305635 TGGTGCAGATGTCATACAAGGT 59.694 45.455 0.00 0.00 0.00 3.50
2373 3220 6.784031 AGGTCAGAGAATAATGGTCTTTTGT 58.216 36.000 0.00 0.00 0.00 2.83
2484 3331 4.934356 TGAGAAGGGGCATATTTGTTCTT 58.066 39.130 0.00 0.00 0.00 2.52
2516 3363 7.153985 TGGTCATCTTTTGTTCCATCATTTTC 58.846 34.615 0.00 0.00 0.00 2.29
2546 3393 7.601073 TGTTACTTCTGACATCATGCTTTAG 57.399 36.000 0.00 0.00 0.00 1.85
3049 4108 3.788227 TGCTTACCTGAATCTGGTTGT 57.212 42.857 16.87 0.00 36.99 3.32
3140 4199 9.742144 TTGGAAGCTTGTAAATTGGTAATAGTA 57.258 29.630 2.10 0.00 0.00 1.82
3234 4293 6.696042 ATTTTTGGTTAGGCAATACCCTTT 57.304 33.333 0.00 0.00 40.58 3.11
3322 4381 1.130054 AGAGCTGGGCAAGAACCTGA 61.130 55.000 0.00 0.00 0.00 3.86
3510 4569 6.032956 TCTGTCATTGTAACGTACCAGAAT 57.967 37.500 0.00 0.00 0.00 2.40
3560 4619 9.353999 GGTGAAAACTCGCTTAATCAATTTATT 57.646 29.630 0.00 0.00 0.00 1.40
3634 4706 5.535783 TCCATGTATTATTGTTGGCAGATGG 59.464 40.000 0.00 0.00 0.00 3.51
3647 4719 3.325870 GGCAGATGGTTTTACTTTTGCC 58.674 45.455 0.00 0.00 42.45 4.52
3731 4804 3.521531 TGAGGATACCATGTTGCCAAGTA 59.478 43.478 0.00 0.00 37.17 2.24
3832 4905 6.870439 GCTTTCTGAAATAAAGATGTGGCTTT 59.130 34.615 2.88 0.00 40.85 3.51
3858 4931 6.257586 AGATGGACTTTCTAGGTCTACAGTT 58.742 40.000 0.00 0.00 34.47 3.16
3888 4977 0.777446 TGCTTTCCTTTGCCCTAGGT 59.223 50.000 8.29 0.00 34.29 3.08
4220 5329 3.694072 CCTGATCTTCCGCCAAATGTTTA 59.306 43.478 0.00 0.00 0.00 2.01
4327 5596 6.854892 CAGTTATCGATTGGCTTCATCAAATC 59.145 38.462 1.71 0.00 0.00 2.17
4336 5605 9.321562 GATTGGCTTCATCAAATCAACATTTAT 57.678 29.630 0.00 0.00 30.51 1.40
4608 6122 6.913873 TGGTTTAACTTTCTGTACAGTGTC 57.086 37.500 21.99 8.05 0.00 3.67
4739 6253 8.097038 ACTCATACTAAATTTCTCAGCAACTCA 58.903 33.333 0.00 0.00 0.00 3.41
5033 6558 6.109359 GGCATACCTAGATCATTATGGTGTC 58.891 44.000 0.00 0.00 32.74 3.67
5075 6600 1.875009 CTGTGTTTCAGCAGCTCTCA 58.125 50.000 0.00 0.00 37.36 3.27
5448 6973 5.065218 TCAAGATGCCGAGAGCTTTAAAATC 59.935 40.000 0.00 0.00 44.23 2.17
5464 6989 1.442769 AATCGCAAGCACTCGTTCAT 58.557 45.000 0.00 0.00 37.18 2.57
5805 7330 3.452990 TCGAATGCCCCACTGATAGTTTA 59.547 43.478 0.00 0.00 0.00 2.01
5835 7360 3.367703 CCATGAAAGGCTGTGGATGTTTC 60.368 47.826 0.00 0.00 33.53 2.78
5943 7468 4.571580 GGTATCGTAGATCAGTCTATCGGG 59.428 50.000 0.00 0.00 45.12 5.14
5956 7481 3.312697 GTCTATCGGGGTTTCTTCATTGC 59.687 47.826 0.00 0.00 0.00 3.56
6019 7544 7.833786 TGAGATAAAATTACTACAGTCGTGGT 58.166 34.615 0.00 0.00 40.40 4.16
6020 7545 7.758076 TGAGATAAAATTACTACAGTCGTGGTG 59.242 37.037 0.00 0.00 37.42 4.17
6021 7546 7.039882 AGATAAAATTACTACAGTCGTGGTGG 58.960 38.462 0.00 0.00 37.42 4.61
6078 7603 7.715657 TGAATTTTTATTGTGAAGCAGTGAGT 58.284 30.769 0.00 0.00 0.00 3.41
6238 7763 7.032377 AGTCAAAAACTTGTTCAAGGAGATC 57.968 36.000 15.51 0.00 33.03 2.75
6356 7881 7.591421 TCCATGTTGCTGATGATAATCAAAT 57.409 32.000 0.00 0.00 0.00 2.32
6598 8123 8.536175 TCATGTTGATAGTACTGATGGTTTGTA 58.464 33.333 5.39 0.00 0.00 2.41
6701 8226 7.923414 TTTGAGCTTTCTAAATCTTACTCCC 57.077 36.000 0.00 0.00 0.00 4.30
6702 8227 6.875972 TGAGCTTTCTAAATCTTACTCCCT 57.124 37.500 0.00 0.00 0.00 4.20
6703 8228 6.879400 TGAGCTTTCTAAATCTTACTCCCTC 58.121 40.000 0.00 0.00 0.00 4.30
6704 8229 6.127026 TGAGCTTTCTAAATCTTACTCCCTCC 60.127 42.308 0.00 0.00 0.00 4.30
6705 8230 5.051153 GCTTTCTAAATCTTACTCCCTCCG 58.949 45.833 0.00 0.00 0.00 4.63
6706 8231 5.395435 GCTTTCTAAATCTTACTCCCTCCGT 60.395 44.000 0.00 0.00 0.00 4.69
6707 8232 6.616237 TTTCTAAATCTTACTCCCTCCGTT 57.384 37.500 0.00 0.00 0.00 4.44
6708 8233 5.848833 TCTAAATCTTACTCCCTCCGTTC 57.151 43.478 0.00 0.00 0.00 3.95
6709 8234 3.908643 AAATCTTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
6710 8235 2.850695 ATCTTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
6711 8236 3.967467 ATCTTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
6712 8237 3.744940 TCTTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
6713 8238 4.051661 TCTTACTCCCTCCGTTCCTAAA 57.948 45.455 0.00 0.00 0.00 1.85
6714 8239 4.617593 TCTTACTCCCTCCGTTCCTAAAT 58.382 43.478 0.00 0.00 0.00 1.40
6715 8240 5.769835 TCTTACTCCCTCCGTTCCTAAATA 58.230 41.667 0.00 0.00 0.00 1.40
6716 8241 6.379579 TCTTACTCCCTCCGTTCCTAAATAT 58.620 40.000 0.00 0.00 0.00 1.28
6717 8242 7.529555 TCTTACTCCCTCCGTTCCTAAATATA 58.470 38.462 0.00 0.00 0.00 0.86
6718 8243 8.006564 TCTTACTCCCTCCGTTCCTAAATATAA 58.993 37.037 0.00 0.00 0.00 0.98
6719 8244 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
6720 8245 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
6721 8246 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
6722 8247 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
6723 8248 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
6724 8249 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
6725 8250 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
6726 8251 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
6727 8252 8.712285 TCCGTTCCTAAATATAAGTCTTTGTG 57.288 34.615 0.00 0.00 0.00 3.33
6728 8253 7.767198 TCCGTTCCTAAATATAAGTCTTTGTGG 59.233 37.037 0.00 0.00 0.00 4.17
6729 8254 7.767198 CCGTTCCTAAATATAAGTCTTTGTGGA 59.233 37.037 0.00 0.00 0.00 4.02
6730 8255 8.818057 CGTTCCTAAATATAAGTCTTTGTGGAG 58.182 37.037 0.00 0.00 0.00 3.86
6731 8256 9.886132 GTTCCTAAATATAAGTCTTTGTGGAGA 57.114 33.333 0.00 0.00 0.00 3.71
6754 8279 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
6755 8280 4.395625 TCCACTATGGACTACATACGGAG 58.604 47.826 0.00 0.00 42.67 4.63
6756 8281 3.057456 CCACTATGGACTACATACGGAGC 60.057 52.174 0.00 0.00 40.96 4.70
6757 8282 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
6758 8283 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
6759 8284 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
6760 8285 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
6761 8286 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
6762 8287 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
6763 8288 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
6764 8289 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
6765 8290 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
6766 8291 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
6767 8292 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
6768 8293 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
6769 8294 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
6770 8295 6.866480 ACATACGGAGCAAAATGAATGAATT 58.134 32.000 0.00 0.00 0.00 2.17
6771 8296 7.322664 ACATACGGAGCAAAATGAATGAATTT 58.677 30.769 0.00 0.00 0.00 1.82
6772 8297 8.465999 ACATACGGAGCAAAATGAATGAATTTA 58.534 29.630 0.00 0.00 0.00 1.40
6773 8298 8.745837 CATACGGAGCAAAATGAATGAATTTAC 58.254 33.333 0.00 0.00 0.00 2.01
6774 8299 6.686630 ACGGAGCAAAATGAATGAATTTACA 58.313 32.000 0.00 0.00 0.00 2.41
6775 8300 6.586082 ACGGAGCAAAATGAATGAATTTACAC 59.414 34.615 0.00 0.00 0.00 2.90
6776 8301 6.808212 CGGAGCAAAATGAATGAATTTACACT 59.192 34.615 0.00 0.00 0.00 3.55
6777 8302 7.008628 CGGAGCAAAATGAATGAATTTACACTC 59.991 37.037 0.00 0.00 0.00 3.51
6778 8303 8.031277 GGAGCAAAATGAATGAATTTACACTCT 58.969 33.333 0.00 0.00 30.86 3.24
6800 8325 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
6801 8326 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
6804 8329 7.987268 AAATGCATCTATATACATCCGTACG 57.013 36.000 8.69 8.69 0.00 3.67
6805 8330 6.694877 ATGCATCTATATACATCCGTACGT 57.305 37.500 15.21 0.00 0.00 3.57
6806 8331 5.875930 TGCATCTATATACATCCGTACGTG 58.124 41.667 15.21 9.44 0.00 4.49
6807 8332 5.644636 TGCATCTATATACATCCGTACGTGA 59.355 40.000 15.21 11.46 0.00 4.35
6808 8333 6.317893 TGCATCTATATACATCCGTACGTGAT 59.682 38.462 15.21 13.24 0.00 3.06
6809 8334 7.148137 TGCATCTATATACATCCGTACGTGATT 60.148 37.037 15.21 9.57 0.00 2.57
6810 8335 7.376336 GCATCTATATACATCCGTACGTGATTC 59.624 40.741 15.21 0.00 0.00 2.52
6811 8336 7.910441 TCTATATACATCCGTACGTGATTCA 57.090 36.000 15.21 6.93 0.00 2.57
6812 8337 8.502105 TCTATATACATCCGTACGTGATTCAT 57.498 34.615 15.21 12.60 0.00 2.57
6813 8338 9.603921 TCTATATACATCCGTACGTGATTCATA 57.396 33.333 15.21 14.01 0.00 2.15
6814 8339 9.865484 CTATATACATCCGTACGTGATTCATAG 57.135 37.037 15.21 13.40 0.00 2.23
6815 8340 4.913335 ACATCCGTACGTGATTCATAGT 57.087 40.909 15.21 7.48 0.00 2.12
6816 8341 4.607955 ACATCCGTACGTGATTCATAGTG 58.392 43.478 15.21 7.03 0.00 2.74
6817 8342 3.703286 TCCGTACGTGATTCATAGTGG 57.297 47.619 15.21 0.00 0.00 4.00
6818 8343 3.281158 TCCGTACGTGATTCATAGTGGA 58.719 45.455 15.21 0.00 0.00 4.02
6819 8344 3.695556 TCCGTACGTGATTCATAGTGGAA 59.304 43.478 15.21 0.00 0.00 3.53
6820 8345 4.340097 TCCGTACGTGATTCATAGTGGAAT 59.660 41.667 15.21 0.00 40.10 3.01
6832 8357 9.255304 GATTCATAGTGGAATCTCTACAAAGAC 57.745 37.037 8.28 0.00 46.15 3.01
6833 8358 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
6834 8359 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
6835 8360 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
6850 8375 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
6851 8376 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
6852 8377 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
6853 8378 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
6854 8379 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
7080 8605 0.187606 GGTTTTTGGGAGGGTGGTCT 59.812 55.000 0.00 0.00 0.00 3.85
7152 8678 7.217200 TCTGTGTAGAATGGGAAATGCTATAC 58.783 38.462 0.00 0.00 0.00 1.47
7213 8739 9.281371 ACCTCAATTTTAGTGTAAAAGACCTAC 57.719 33.333 0.00 0.00 40.58 3.18
7232 8758 5.924825 ACCTACTTAACGACAACTGCTAAAG 59.075 40.000 0.00 0.00 0.00 1.85
7397 8923 8.166422 AGTTGAAACCGAATCTTAAGAAATGT 57.834 30.769 9.71 2.12 0.00 2.71
7689 9215 6.238759 GCAGGGTAGGTTATATTCTGCTTTTG 60.239 42.308 0.00 0.00 41.75 2.44
8228 9763 8.581263 CGATCAAAAGATAGAAACAATGCAAAG 58.419 33.333 0.00 0.00 0.00 2.77
8472 10007 8.740123 TCAAGTGAACATTAGAACTTTGGTTA 57.260 30.769 0.00 0.00 35.58 2.85
8559 10101 5.839262 TGTACTTCTAGAATTGTTGTGCG 57.161 39.130 5.44 0.00 0.00 5.34
8561 10103 3.403038 ACTTCTAGAATTGTTGTGCGCT 58.597 40.909 9.73 0.00 0.00 5.92
8584 10140 8.948145 CGCTATTATACTCTAGGAAGTGTGTAT 58.052 37.037 0.00 0.00 32.00 2.29
8611 10167 7.099764 CAGTCTGTTGGTTGTGACTTCTATAT 58.900 38.462 0.00 0.00 37.64 0.86
8650 10509 1.133025 ACGCCAGATGCTATTTGTTGC 59.867 47.619 0.00 0.00 38.05 4.17
8652 10511 2.540361 CGCCAGATGCTATTTGTTGCTC 60.540 50.000 0.00 0.00 38.05 4.26
8908 10838 3.703556 TGCCAGTTTGGAAAACAGATGAA 59.296 39.130 5.72 0.00 40.96 2.57
8934 10871 6.454848 GCACAAGTGAATCTTTGAGATACTCG 60.455 42.308 4.04 0.00 32.89 4.18
8936 10873 6.071334 ACAAGTGAATCTTTGAGATACTCGGA 60.071 38.462 5.38 0.00 32.89 4.55
8937 10874 6.142818 AGTGAATCTTTGAGATACTCGGAG 57.857 41.667 2.83 2.83 32.89 4.63
8938 10875 5.654650 AGTGAATCTTTGAGATACTCGGAGT 59.345 40.000 15.95 15.95 32.89 3.85
8940 10877 5.652452 TGAATCTTTGAGATACTCGGAGTCA 59.348 40.000 15.05 3.43 32.89 3.41
8941 10878 6.152831 TGAATCTTTGAGATACTCGGAGTCAA 59.847 38.462 15.05 9.73 32.89 3.18
9057 11020 1.206132 CCAGTCTGGCGGTACATGTTA 59.794 52.381 5.79 0.00 0.00 2.41
9089 11052 3.828921 ACTCCGTCTGCAGGTATACATA 58.171 45.455 15.13 0.00 0.00 2.29
9091 11054 2.557056 TCCGTCTGCAGGTATACATAGC 59.443 50.000 15.13 5.90 0.00 2.97
9092 11055 2.352814 CCGTCTGCAGGTATACATAGCC 60.353 54.545 15.13 0.00 0.00 3.93
9094 11057 3.654414 GTCTGCAGGTATACATAGCCAC 58.346 50.000 15.13 0.00 0.00 5.01
9095 11058 3.069586 GTCTGCAGGTATACATAGCCACA 59.930 47.826 15.13 0.00 0.00 4.17
9106 11074 2.093890 CATAGCCACAGGTCATGCAAA 58.906 47.619 0.00 0.00 0.00 3.68
9114 11082 5.506317 GCCACAGGTCATGCAAATTATAGAC 60.506 44.000 0.00 0.00 0.00 2.59
9309 11312 5.288015 TGGCAAATGAAGTGTTGTATTGTG 58.712 37.500 0.00 0.00 0.00 3.33
9310 11313 4.685628 GGCAAATGAAGTGTTGTATTGTGG 59.314 41.667 0.00 0.00 0.00 4.17
9311 11314 5.288804 GCAAATGAAGTGTTGTATTGTGGT 58.711 37.500 0.00 0.00 0.00 4.16
9312 11315 5.175491 GCAAATGAAGTGTTGTATTGTGGTG 59.825 40.000 0.00 0.00 0.00 4.17
9313 11316 5.452078 AATGAAGTGTTGTATTGTGGTGG 57.548 39.130 0.00 0.00 0.00 4.61
9314 11317 2.621055 TGAAGTGTTGTATTGTGGTGGC 59.379 45.455 0.00 0.00 0.00 5.01
9315 11318 1.616159 AGTGTTGTATTGTGGTGGCC 58.384 50.000 0.00 0.00 0.00 5.36
9316 11319 1.144913 AGTGTTGTATTGTGGTGGCCT 59.855 47.619 3.32 0.00 0.00 5.19
9317 11320 1.960689 GTGTTGTATTGTGGTGGCCTT 59.039 47.619 3.32 0.00 0.00 4.35
9318 11321 2.364002 GTGTTGTATTGTGGTGGCCTTT 59.636 45.455 3.32 0.00 0.00 3.11
9319 11322 2.625790 TGTTGTATTGTGGTGGCCTTTC 59.374 45.455 3.32 0.00 0.00 2.62
9320 11323 2.625790 GTTGTATTGTGGTGGCCTTTCA 59.374 45.455 3.32 0.00 0.00 2.69
9321 11324 2.513753 TGTATTGTGGTGGCCTTTCAG 58.486 47.619 3.32 0.00 0.00 3.02
9322 11325 1.202348 GTATTGTGGTGGCCTTTCAGC 59.798 52.381 3.32 0.00 35.87 4.26
9323 11326 1.526575 ATTGTGGTGGCCTTTCAGCG 61.527 55.000 3.32 0.00 37.91 5.18
9324 11327 2.281484 GTGGTGGCCTTTCAGCGA 60.281 61.111 3.32 0.00 37.91 4.93
9325 11328 1.896660 GTGGTGGCCTTTCAGCGAA 60.897 57.895 3.32 0.00 37.91 4.70
9326 11329 1.074775 TGGTGGCCTTTCAGCGAAT 59.925 52.632 3.32 0.00 37.91 3.34
9327 11330 0.539438 TGGTGGCCTTTCAGCGAATT 60.539 50.000 3.32 0.00 37.91 2.17
9328 11331 0.603065 GGTGGCCTTTCAGCGAATTT 59.397 50.000 3.32 0.00 0.00 1.82
9329 11332 1.402852 GGTGGCCTTTCAGCGAATTTC 60.403 52.381 3.32 0.00 0.00 2.17
9330 11333 0.887933 TGGCCTTTCAGCGAATTTCC 59.112 50.000 3.32 0.00 0.00 3.13
9331 11334 1.177401 GGCCTTTCAGCGAATTTCCT 58.823 50.000 0.00 0.00 0.00 3.36
9332 11335 1.133216 GGCCTTTCAGCGAATTTCCTC 59.867 52.381 0.00 0.00 0.00 3.71
9340 11343 1.920762 CGAATTTCCTCGAGCTCGC 59.079 57.895 30.97 13.24 41.44 5.03
9399 11406 2.543637 TCCCCTCTCCTCCCCCTT 60.544 66.667 0.00 0.00 0.00 3.95
9437 11448 3.710722 CTCCCCCTCGCTGTTGCT 61.711 66.667 0.00 0.00 36.97 3.91
9441 11452 2.031012 CCCTCGCTGTTGCTGTCA 59.969 61.111 0.00 0.00 36.97 3.58
9665 11720 3.785859 GGCGCCTGATCTGGGTCA 61.786 66.667 22.15 0.00 0.00 4.02
9710 11765 1.599797 GGGTTGTTCTCCGGTGGTG 60.600 63.158 0.00 0.00 0.00 4.17
9907 11962 2.590092 GGTGCTGCCGGTCCTTAT 59.410 61.111 1.90 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 34 1.135199 GTGGCGACTTCGATTCCTACA 60.135 52.381 2.02 0.00 43.02 2.74
41 47 3.053455 GCATCTATAGAAGTGTGGCGAC 58.947 50.000 6.52 0.00 0.00 5.19
48 54 3.650070 TCGCAGGCATCTATAGAAGTG 57.350 47.619 6.52 2.68 0.00 3.16
87 94 0.247814 TCTTACGTAGTAGCACGCGC 60.248 55.000 5.73 0.00 46.93 6.86
89 96 3.301643 GCAATTCTTACGTAGTAGCACGC 60.302 47.826 0.00 0.00 46.93 5.34
92 99 3.863424 GCTGCAATTCTTACGTAGTAGCA 59.137 43.478 13.02 9.87 46.93 3.49
100 107 0.584054 GTCGCGCTGCAATTCTTACG 60.584 55.000 5.56 0.00 0.00 3.18
131 138 6.945218 TGTTTTATTTTCATGGCTGCCTATT 58.055 32.000 21.03 1.65 0.00 1.73
132 139 6.543430 TGTTTTATTTTCATGGCTGCCTAT 57.457 33.333 21.03 8.93 0.00 2.57
170 180 8.908786 TGTTGCCCACAAATTTCATTTTTATA 57.091 26.923 0.00 0.00 37.58 0.98
316 326 9.683651 GTTTCGGAAAAAGTTCACATTTAAAAG 57.316 29.630 4.46 0.00 35.25 2.27
493 1033 6.790232 TCCTTTTCAAAAAGTGTCCAGAAT 57.210 33.333 12.80 0.00 42.92 2.40
594 1134 8.655901 TGGTTTTCCTGGCTTTCTATTATTTTT 58.344 29.630 0.00 0.00 41.38 1.94
595 1135 8.201242 TGGTTTTCCTGGCTTTCTATTATTTT 57.799 30.769 0.00 0.00 41.38 1.82
596 1136 7.673926 TCTGGTTTTCCTGGCTTTCTATTATTT 59.326 33.333 0.00 0.00 41.38 1.40
597 1137 7.182060 TCTGGTTTTCCTGGCTTTCTATTATT 58.818 34.615 0.00 0.00 41.38 1.40
598 1138 6.731467 TCTGGTTTTCCTGGCTTTCTATTAT 58.269 36.000 0.00 0.00 41.38 1.28
599 1139 6.134535 TCTGGTTTTCCTGGCTTTCTATTA 57.865 37.500 0.00 0.00 41.38 0.98
600 1140 4.998051 TCTGGTTTTCCTGGCTTTCTATT 58.002 39.130 0.00 0.00 41.38 1.73
601 1141 4.657814 TCTGGTTTTCCTGGCTTTCTAT 57.342 40.909 0.00 0.00 41.38 1.98
602 1142 4.447138 TTCTGGTTTTCCTGGCTTTCTA 57.553 40.909 0.00 0.00 41.38 2.10
603 1143 3.312736 TTCTGGTTTTCCTGGCTTTCT 57.687 42.857 0.00 0.00 41.38 2.52
604 1144 3.636764 TCTTTCTGGTTTTCCTGGCTTTC 59.363 43.478 0.00 0.00 41.38 2.62
605 1145 3.642141 TCTTTCTGGTTTTCCTGGCTTT 58.358 40.909 0.00 0.00 41.38 3.51
606 1146 3.312736 TCTTTCTGGTTTTCCTGGCTT 57.687 42.857 0.00 0.00 41.38 4.35
607 1147 3.312736 TTCTTTCTGGTTTTCCTGGCT 57.687 42.857 0.00 0.00 41.38 4.75
608 1148 3.573967 TGATTCTTTCTGGTTTTCCTGGC 59.426 43.478 0.00 0.00 41.38 4.85
609 1149 5.789643 TTGATTCTTTCTGGTTTTCCTGG 57.210 39.130 0.00 0.00 41.38 4.45
610 1150 7.041107 TGTTTTGATTCTTTCTGGTTTTCCTG 58.959 34.615 0.00 0.00 41.38 3.86
611 1151 7.181569 TGTTTTGATTCTTTCTGGTTTTCCT 57.818 32.000 0.00 0.00 41.38 3.36
612 1152 7.763985 TCTTGTTTTGATTCTTTCTGGTTTTCC 59.236 33.333 0.00 0.00 41.14 3.13
613 1153 8.702163 TCTTGTTTTGATTCTTTCTGGTTTTC 57.298 30.769 0.00 0.00 0.00 2.29
614 1154 9.500785 TTTCTTGTTTTGATTCTTTCTGGTTTT 57.499 25.926 0.00 0.00 0.00 2.43
615 1155 9.500785 TTTTCTTGTTTTGATTCTTTCTGGTTT 57.499 25.926 0.00 0.00 0.00 3.27
616 1156 9.500785 TTTTTCTTGTTTTGATTCTTTCTGGTT 57.499 25.926 0.00 0.00 0.00 3.67
617 1157 9.671279 ATTTTTCTTGTTTTGATTCTTTCTGGT 57.329 25.926 0.00 0.00 0.00 4.00
620 1160 9.330063 GGGATTTTTCTTGTTTTGATTCTTTCT 57.670 29.630 0.00 0.00 0.00 2.52
621 1161 8.275632 CGGGATTTTTCTTGTTTTGATTCTTTC 58.724 33.333 0.00 0.00 0.00 2.62
622 1162 7.226523 CCGGGATTTTTCTTGTTTTGATTCTTT 59.773 33.333 0.00 0.00 0.00 2.52
623 1163 6.705825 CCGGGATTTTTCTTGTTTTGATTCTT 59.294 34.615 0.00 0.00 0.00 2.52
624 1164 6.183360 ACCGGGATTTTTCTTGTTTTGATTCT 60.183 34.615 6.32 0.00 0.00 2.40
625 1165 5.989168 ACCGGGATTTTTCTTGTTTTGATTC 59.011 36.000 6.32 0.00 0.00 2.52
626 1166 5.924356 ACCGGGATTTTTCTTGTTTTGATT 58.076 33.333 6.32 0.00 0.00 2.57
627 1167 5.545063 ACCGGGATTTTTCTTGTTTTGAT 57.455 34.783 6.32 0.00 0.00 2.57
628 1168 5.346181 AACCGGGATTTTTCTTGTTTTGA 57.654 34.783 6.32 0.00 0.00 2.69
629 1169 6.201997 CCTAAACCGGGATTTTTCTTGTTTTG 59.798 38.462 6.32 0.00 0.00 2.44
630 1170 6.285224 CCTAAACCGGGATTTTTCTTGTTTT 58.715 36.000 6.32 0.00 0.00 2.43
631 1171 5.849510 CCTAAACCGGGATTTTTCTTGTTT 58.150 37.500 6.32 0.00 0.00 2.83
632 1172 5.462530 CCTAAACCGGGATTTTTCTTGTT 57.537 39.130 6.32 0.00 0.00 2.83
680 1220 5.236478 CCAGATATACACAATCCGTCCAAAC 59.764 44.000 0.00 0.00 0.00 2.93
681 1221 5.129650 TCCAGATATACACAATCCGTCCAAA 59.870 40.000 0.00 0.00 0.00 3.28
682 1222 4.651962 TCCAGATATACACAATCCGTCCAA 59.348 41.667 0.00 0.00 0.00 3.53
683 1223 4.219919 TCCAGATATACACAATCCGTCCA 58.780 43.478 0.00 0.00 0.00 4.02
684 1224 4.281182 ACTCCAGATATACACAATCCGTCC 59.719 45.833 0.00 0.00 0.00 4.79
685 1225 5.223382 CACTCCAGATATACACAATCCGTC 58.777 45.833 0.00 0.00 0.00 4.79
686 1226 4.039245 CCACTCCAGATATACACAATCCGT 59.961 45.833 0.00 0.00 0.00 4.69
687 1227 4.560128 CCACTCCAGATATACACAATCCG 58.440 47.826 0.00 0.00 0.00 4.18
688 1228 4.804261 GCCCACTCCAGATATACACAATCC 60.804 50.000 0.00 0.00 0.00 3.01
689 1229 4.319177 GCCCACTCCAGATATACACAATC 58.681 47.826 0.00 0.00 0.00 2.67
690 1230 3.073062 GGCCCACTCCAGATATACACAAT 59.927 47.826 0.00 0.00 0.00 2.71
691 1231 2.438021 GGCCCACTCCAGATATACACAA 59.562 50.000 0.00 0.00 0.00 3.33
692 1232 2.047061 GGCCCACTCCAGATATACACA 58.953 52.381 0.00 0.00 0.00 3.72
693 1233 1.000955 CGGCCCACTCCAGATATACAC 59.999 57.143 0.00 0.00 0.00 2.90
694 1234 1.338107 CGGCCCACTCCAGATATACA 58.662 55.000 0.00 0.00 0.00 2.29
695 1235 0.608640 CCGGCCCACTCCAGATATAC 59.391 60.000 0.00 0.00 0.00 1.47
696 1236 1.192146 GCCGGCCCACTCCAGATATA 61.192 60.000 18.11 0.00 0.00 0.86
697 1237 2.520536 GCCGGCCCACTCCAGATAT 61.521 63.158 18.11 0.00 0.00 1.63
698 1238 3.161450 GCCGGCCCACTCCAGATA 61.161 66.667 18.11 0.00 0.00 1.98
709 1249 3.295304 GACAAAACATGGGCCGGCC 62.295 63.158 38.57 38.57 0.00 6.13
710 1250 2.261361 GACAAAACATGGGCCGGC 59.739 61.111 21.18 21.18 0.00 6.13
711 1251 2.566010 CGACAAAACATGGGCCGG 59.434 61.111 0.00 0.00 0.00 6.13
712 1252 2.126502 GCGACAAAACATGGGCCG 60.127 61.111 0.00 0.00 0.00 6.13
713 1253 1.080569 CAGCGACAAAACATGGGCC 60.081 57.895 0.00 0.00 34.28 5.80
714 1254 1.080569 CCAGCGACAAAACATGGGC 60.081 57.895 0.00 0.00 34.05 5.36
715 1255 1.080569 GCCAGCGACAAAACATGGG 60.081 57.895 0.00 0.00 0.00 4.00
716 1256 0.314935 AAGCCAGCGACAAAACATGG 59.685 50.000 0.00 0.00 0.00 3.66
717 1257 1.411394 CAAGCCAGCGACAAAACATG 58.589 50.000 0.00 0.00 0.00 3.21
718 1258 0.314935 CCAAGCCAGCGACAAAACAT 59.685 50.000 0.00 0.00 0.00 2.71
719 1259 1.732917 CCAAGCCAGCGACAAAACA 59.267 52.632 0.00 0.00 0.00 2.83
720 1260 1.661509 GCCAAGCCAGCGACAAAAC 60.662 57.895 0.00 0.00 0.00 2.43
721 1261 1.827789 AGCCAAGCCAGCGACAAAA 60.828 52.632 0.00 0.00 34.64 2.44
722 1262 2.203337 AGCCAAGCCAGCGACAAA 60.203 55.556 0.00 0.00 34.64 2.83
723 1263 2.979676 CAGCCAAGCCAGCGACAA 60.980 61.111 0.00 0.00 34.64 3.18
728 1268 3.441290 CAGAGCAGCCAAGCCAGC 61.441 66.667 0.00 0.00 34.23 4.85
729 1269 2.033757 ACAGAGCAGCCAAGCCAG 59.966 61.111 0.00 0.00 34.23 4.85
730 1270 2.281970 CACAGAGCAGCCAAGCCA 60.282 61.111 0.00 0.00 34.23 4.75
731 1271 3.745803 GCACAGAGCAGCCAAGCC 61.746 66.667 0.00 0.00 44.79 4.35
732 1272 4.099170 CGCACAGAGCAGCCAAGC 62.099 66.667 0.00 0.00 46.13 4.01
733 1273 1.703438 GATCGCACAGAGCAGCCAAG 61.703 60.000 0.00 0.00 46.13 3.61
734 1274 1.742880 GATCGCACAGAGCAGCCAA 60.743 57.895 0.00 0.00 46.13 4.52
735 1275 2.125391 GATCGCACAGAGCAGCCA 60.125 61.111 0.00 0.00 46.13 4.75
736 1276 3.260483 CGATCGCACAGAGCAGCC 61.260 66.667 0.26 0.00 46.13 4.85
737 1277 3.922893 GCGATCGCACAGAGCAGC 61.923 66.667 33.89 0.18 46.13 5.25
738 1278 3.260483 GGCGATCGCACAGAGCAG 61.260 66.667 38.00 0.00 46.13 4.24
739 1279 4.819761 GGGCGATCGCACAGAGCA 62.820 66.667 38.00 0.00 45.30 4.26
741 1281 4.193334 TCGGGCGATCGCACAGAG 62.193 66.667 38.46 24.19 46.53 3.35
742 1282 4.492160 GTCGGGCGATCGCACAGA 62.492 66.667 38.46 31.35 46.53 3.41
743 1283 4.794439 TGTCGGGCGATCGCACAG 62.794 66.667 38.46 29.80 46.53 3.66
745 1285 4.796231 AGTGTCGGGCGATCGCAC 62.796 66.667 38.00 35.22 44.11 5.34
746 1286 4.063967 AAGTGTCGGGCGATCGCA 62.064 61.111 38.00 18.33 44.11 5.10
747 1287 3.554692 CAAGTGTCGGGCGATCGC 61.555 66.667 31.52 31.52 41.06 4.58
748 1288 2.126071 ACAAGTGTCGGGCGATCG 60.126 61.111 11.69 11.69 0.00 3.69
749 1289 3.782042 GACAAGTGTCGGGCGATC 58.218 61.111 0.00 0.00 35.12 3.69
757 1297 3.004734 GCTCGCTGCGACAAGTGTC 62.005 63.158 22.24 1.12 41.47 3.67
758 1298 3.038417 GCTCGCTGCGACAAGTGT 61.038 61.111 22.24 0.00 0.00 3.55
767 1307 2.240500 CCTATTGGACGCTCGCTGC 61.241 63.158 0.00 0.00 35.00 5.25
768 1308 1.592669 CCCTATTGGACGCTCGCTG 60.593 63.158 0.00 0.00 35.39 5.18
769 1309 1.614241 AACCCTATTGGACGCTCGCT 61.614 55.000 0.00 0.00 38.00 4.93
770 1310 0.743345 AAACCCTATTGGACGCTCGC 60.743 55.000 0.00 0.00 38.00 5.03
771 1311 1.664151 GAAAACCCTATTGGACGCTCG 59.336 52.381 0.00 0.00 38.00 5.03
772 1312 2.014857 GGAAAACCCTATTGGACGCTC 58.985 52.381 0.00 0.00 38.00 5.03
773 1313 1.340697 GGGAAAACCCTATTGGACGCT 60.341 52.381 0.00 0.00 38.00 5.07
774 1314 1.100510 GGGAAAACCCTATTGGACGC 58.899 55.000 0.00 0.00 38.00 5.19
775 1315 1.339342 ACGGGAAAACCCTATTGGACG 60.339 52.381 0.00 0.00 38.00 4.79
776 1316 2.026542 AGACGGGAAAACCCTATTGGAC 60.027 50.000 0.00 0.00 38.00 4.02
777 1317 2.271777 AGACGGGAAAACCCTATTGGA 58.728 47.619 0.00 0.00 38.00 3.53
778 1318 2.801077 AGACGGGAAAACCCTATTGG 57.199 50.000 0.00 0.00 41.37 3.16
779 1319 5.989777 CAGTATAGACGGGAAAACCCTATTG 59.010 44.000 0.00 0.00 34.99 1.90
780 1320 5.071384 CCAGTATAGACGGGAAAACCCTATT 59.929 44.000 0.00 0.00 43.13 1.73
781 1321 4.591924 CCAGTATAGACGGGAAAACCCTAT 59.408 45.833 0.00 0.00 43.13 2.57
782 1322 3.962718 CCAGTATAGACGGGAAAACCCTA 59.037 47.826 0.00 0.00 43.13 3.53
783 1323 2.770232 CCAGTATAGACGGGAAAACCCT 59.230 50.000 0.00 0.00 43.13 4.34
784 1324 2.502947 ACCAGTATAGACGGGAAAACCC 59.497 50.000 13.87 0.00 43.13 4.11
785 1325 3.900966 ACCAGTATAGACGGGAAAACC 57.099 47.619 13.87 0.00 43.13 3.27
786 1326 7.671495 TTTTAACCAGTATAGACGGGAAAAC 57.329 36.000 13.87 0.00 43.13 2.43
787 1327 7.391275 CCTTTTTAACCAGTATAGACGGGAAAA 59.609 37.037 13.87 10.01 43.13 2.29
788 1328 6.880529 CCTTTTTAACCAGTATAGACGGGAAA 59.119 38.462 13.87 4.65 43.13 3.13
789 1329 6.013466 ACCTTTTTAACCAGTATAGACGGGAA 60.013 38.462 13.87 0.00 43.13 3.97
790 1330 5.484998 ACCTTTTTAACCAGTATAGACGGGA 59.515 40.000 13.87 0.00 43.13 5.14
791 1331 5.737860 ACCTTTTTAACCAGTATAGACGGG 58.262 41.667 5.04 5.04 45.68 5.28
792 1332 8.953368 ATAACCTTTTTAACCAGTATAGACGG 57.047 34.615 0.00 0.00 0.00 4.79
1093 1642 1.006227 GAGAGGGGGAGGGGGAAAT 59.994 63.158 0.00 0.00 0.00 2.17
1563 2407 2.879907 GCATGCGGCACACTGAAT 59.120 55.556 4.03 0.00 43.97 2.57
1638 2482 1.867615 CTGTGAGAGCTTGCACTGC 59.132 57.895 17.32 2.91 36.05 4.40
1977 2821 3.354948 TCATCAATTAGCAGCCACACT 57.645 42.857 0.00 0.00 0.00 3.55
2211 3058 8.110860 AGTAATGCTAGTTTTACTGCATGTTT 57.889 30.769 14.76 6.03 39.90 2.83
2351 3198 6.072508 TGCACAAAAGACCATTATTCTCTGAC 60.073 38.462 0.00 0.00 0.00 3.51
2352 3199 6.003326 TGCACAAAAGACCATTATTCTCTGA 58.997 36.000 0.00 0.00 0.00 3.27
2373 3220 5.678616 GCTCCAAAAAGTTAACAGACTTGCA 60.679 40.000 8.61 0.00 39.68 4.08
2484 3331 6.726379 TGGAACAAAAGATGACCATACCATA 58.274 36.000 0.00 0.00 35.44 2.74
2546 3393 9.003658 TCTTGGAATCTAACTTGAATTTCTGTC 57.996 33.333 0.00 0.00 0.00 3.51
2676 3523 2.814336 CCTTGCTTCTGTTGGTACCTTC 59.186 50.000 14.36 6.70 0.00 3.46
2805 3652 4.852134 TGTACATGCAAAACAGAGCAAT 57.148 36.364 0.00 0.00 44.88 3.56
3049 4108 5.918426 TTTCATAAGGAAATCATGCTGCA 57.082 34.783 4.13 4.13 40.51 4.41
3140 4199 8.046708 TGCATACTGTGTACAATAAAAGGAGAT 58.953 33.333 0.00 0.00 0.00 2.75
3234 4293 3.055963 CCACCTTGCAGATAAAATTGGCA 60.056 43.478 0.00 0.00 0.00 4.92
3322 4381 6.352222 CCACCACATAGAAACTGGTTAGATCT 60.352 42.308 0.00 0.00 36.06 2.75
3510 4569 7.016072 ACCTCCAATTGGTGACATGAATTTTAA 59.984 33.333 24.79 0.13 42.32 1.52
3634 4706 7.542824 TCAATAATAAGCCGGCAAAAGTAAAAC 59.457 33.333 31.54 0.00 0.00 2.43
3647 4719 8.572828 TGCAAATTACATTCAATAATAAGCCG 57.427 30.769 0.00 0.00 0.00 5.52
3832 4905 7.411808 ACTGTAGACCTAGAAAGTCCATCTAA 58.588 38.462 0.00 0.00 34.67 2.10
3858 4931 2.234300 AGGAAAGCAGAAACGACGAA 57.766 45.000 0.00 0.00 0.00 3.85
3888 4977 5.066593 AGGGAAAACAGCAACAAAAACAAA 58.933 33.333 0.00 0.00 0.00 2.83
4220 5329 4.103627 TCACCTCATAGATGCCATTCATGT 59.896 41.667 0.00 0.00 35.05 3.21
4276 5385 1.466856 ATCACGGCATGCATCACTTT 58.533 45.000 21.36 0.00 0.00 2.66
4277 5386 1.466856 AATCACGGCATGCATCACTT 58.533 45.000 21.36 4.12 0.00 3.16
4278 5387 1.466856 AAATCACGGCATGCATCACT 58.533 45.000 21.36 0.00 0.00 3.41
4279 5388 3.181497 ACTTAAATCACGGCATGCATCAC 60.181 43.478 21.36 0.10 0.00 3.06
4280 5389 3.016031 ACTTAAATCACGGCATGCATCA 58.984 40.909 21.36 0.00 0.00 3.07
4281 5390 3.065233 TGACTTAAATCACGGCATGCATC 59.935 43.478 21.36 1.35 0.00 3.91
4282 5391 3.016031 TGACTTAAATCACGGCATGCAT 58.984 40.909 21.36 3.56 0.00 3.96
4283 5392 2.419673 CTGACTTAAATCACGGCATGCA 59.580 45.455 21.36 0.00 0.00 3.96
4284 5393 2.420022 ACTGACTTAAATCACGGCATGC 59.580 45.455 9.90 9.90 0.00 4.06
4285 5394 4.685169 AACTGACTTAAATCACGGCATG 57.315 40.909 0.00 0.00 0.00 4.06
4336 5605 7.506114 AGTTCTGACATTCAAGTTAGTACCAA 58.494 34.615 0.00 0.00 29.57 3.67
4608 6122 5.352284 ACTATTCATCTCAGTTTACTGGCG 58.648 41.667 9.82 2.64 43.91 5.69
4739 6253 6.331369 ACAGCAAACAACTGTAAATGCTAT 57.669 33.333 13.88 4.53 46.32 2.97
5033 6558 3.305676 CCTTACAGGATAGTGGATCAGCG 60.306 52.174 0.00 0.00 37.67 5.18
5075 6600 5.431765 AGATGATGCACTCTTTTTCGGTAT 58.568 37.500 0.00 0.00 0.00 2.73
5448 6973 0.235665 AACATGAACGAGTGCTTGCG 59.764 50.000 0.00 0.00 0.00 4.85
5464 6989 5.869344 CCATAGACACTTTCGAATCAGAACA 59.131 40.000 0.00 0.00 0.00 3.18
5835 7360 4.586841 TCCAGTGAAATTTTACCACCTTGG 59.413 41.667 9.31 9.94 45.02 3.61
5943 7468 0.243636 CCACCCGCAATGAAGAAACC 59.756 55.000 0.00 0.00 0.00 3.27
6019 7544 6.657117 TCCGAATATTGACAAAAGTCATTCCA 59.343 34.615 0.00 0.00 32.91 3.53
6020 7545 7.083875 TCCGAATATTGACAAAAGTCATTCC 57.916 36.000 0.00 0.00 32.91 3.01
6021 7546 9.573133 AAATCCGAATATTGACAAAAGTCATTC 57.427 29.630 0.00 0.67 32.91 2.67
6261 7786 5.471456 AGAGTCATGCGAATGGATATTTTCC 59.529 40.000 2.82 0.00 45.69 3.13
6276 7801 2.099921 TCTTCGCTCCTTAGAGTCATGC 59.900 50.000 0.00 0.00 42.59 4.06
6284 7809 1.996191 GCACAAGTCTTCGCTCCTTAG 59.004 52.381 0.00 0.00 0.00 2.18
6598 8123 8.402798 TCCAGTGACAATTTAACATTATGTGT 57.597 30.769 0.00 0.00 44.84 3.72
6617 8142 3.242543 GCAGCATTTCTTACGATCCAGTG 60.243 47.826 0.00 0.00 0.00 3.66
6695 8220 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
6696 8221 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
6697 8222 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
6698 8223 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
6699 8224 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
6700 8225 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
6701 8226 8.818057 CACAAAGACTTATATTTAGGAACGGAG 58.182 37.037 0.00 0.00 0.00 4.63
6702 8227 7.767198 CCACAAAGACTTATATTTAGGAACGGA 59.233 37.037 0.00 0.00 0.00 4.69
6703 8228 7.767198 TCCACAAAGACTTATATTTAGGAACGG 59.233 37.037 0.00 0.00 0.00 4.44
6704 8229 8.712285 TCCACAAAGACTTATATTTAGGAACG 57.288 34.615 0.00 0.00 0.00 3.95
6705 8230 9.886132 TCTCCACAAAGACTTATATTTAGGAAC 57.114 33.333 0.00 0.00 28.02 3.62
6733 8258 4.395625 CTCCGTATGTAGTCCATAGTGGA 58.604 47.826 0.00 0.00 45.98 4.02
6734 8259 3.057456 GCTCCGTATGTAGTCCATAGTGG 60.057 52.174 0.00 0.00 36.71 4.00
6735 8260 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
6736 8261 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
6737 8262 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
6738 8263 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
6739 8264 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
6740 8265 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
6741 8266 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
6742 8267 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
6743 8268 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
6744 8269 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
6745 8270 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
6746 8271 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
6747 8272 7.760131 AAATTCATTCATTTTGCTCCGTATG 57.240 32.000 0.00 0.00 0.00 2.39
6748 8273 8.465999 TGTAAATTCATTCATTTTGCTCCGTAT 58.534 29.630 0.00 0.00 0.00 3.06
6749 8274 7.753132 GTGTAAATTCATTCATTTTGCTCCGTA 59.247 33.333 0.00 0.00 0.00 4.02
6750 8275 6.586082 GTGTAAATTCATTCATTTTGCTCCGT 59.414 34.615 0.00 0.00 0.00 4.69
6751 8276 6.808212 AGTGTAAATTCATTCATTTTGCTCCG 59.192 34.615 0.00 0.00 0.00 4.63
6752 8277 8.031277 AGAGTGTAAATTCATTCATTTTGCTCC 58.969 33.333 0.00 0.00 0.00 4.70
6753 8278 8.976986 AGAGTGTAAATTCATTCATTTTGCTC 57.023 30.769 0.00 0.00 0.00 4.26
6774 8299 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
6775 8300 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
6778 8303 9.511144 CGTACGGATGTATATAGATGCATTTTA 57.489 33.333 7.57 0.00 38.38 1.52
6779 8304 8.033038 ACGTACGGATGTATATAGATGCATTTT 58.967 33.333 21.06 0.00 38.38 1.82
6780 8305 7.488150 CACGTACGGATGTATATAGATGCATTT 59.512 37.037 21.06 0.00 38.38 2.32
6781 8306 6.972901 CACGTACGGATGTATATAGATGCATT 59.027 38.462 21.06 1.23 38.38 3.56
6782 8307 6.317893 TCACGTACGGATGTATATAGATGCAT 59.682 38.462 21.06 0.00 40.68 3.96
6783 8308 5.644636 TCACGTACGGATGTATATAGATGCA 59.355 40.000 21.06 0.00 32.11 3.96
6784 8309 6.115450 TCACGTACGGATGTATATAGATGC 57.885 41.667 21.06 0.00 32.11 3.91
6785 8310 8.395633 TGAATCACGTACGGATGTATATAGATG 58.604 37.037 21.06 3.78 32.11 2.90
6786 8311 8.502105 TGAATCACGTACGGATGTATATAGAT 57.498 34.615 21.06 0.00 32.11 1.98
6787 8312 7.910441 TGAATCACGTACGGATGTATATAGA 57.090 36.000 21.06 2.02 32.11 1.98
6788 8313 9.865484 CTATGAATCACGTACGGATGTATATAG 57.135 37.037 21.06 16.97 32.11 1.31
6789 8314 9.387257 ACTATGAATCACGTACGGATGTATATA 57.613 33.333 21.06 13.06 32.11 0.86
6790 8315 8.182227 CACTATGAATCACGTACGGATGTATAT 58.818 37.037 21.06 12.71 32.11 0.86
6791 8316 7.361457 CCACTATGAATCACGTACGGATGTATA 60.361 40.741 21.06 16.76 32.11 1.47
6792 8317 6.379386 CACTATGAATCACGTACGGATGTAT 58.621 40.000 21.06 16.58 32.11 2.29
6793 8318 5.278120 CCACTATGAATCACGTACGGATGTA 60.278 44.000 21.06 11.57 0.00 2.29
6794 8319 4.499188 CCACTATGAATCACGTACGGATGT 60.499 45.833 21.06 9.78 0.00 3.06
6795 8320 3.981416 CCACTATGAATCACGTACGGATG 59.019 47.826 21.06 9.94 0.00 3.51
6796 8321 3.887110 TCCACTATGAATCACGTACGGAT 59.113 43.478 21.06 15.72 0.00 4.18
6797 8322 3.281158 TCCACTATGAATCACGTACGGA 58.719 45.455 21.06 14.09 0.00 4.69
6798 8323 3.703286 TCCACTATGAATCACGTACGG 57.297 47.619 21.06 8.79 0.00 4.02
6799 8324 5.807730 GATTCCACTATGAATCACGTACG 57.192 43.478 15.01 15.01 46.40 3.67
6807 8332 8.986991 AGTCTTTGTAGAGATTCCACTATGAAT 58.013 33.333 0.00 0.00 37.66 2.57
6808 8333 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
6809 8334 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
6825 8350 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
6826 8351 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
6827 8352 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
6828 8353 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
6829 8354 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
6830 8355 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
6831 8356 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
6832 8357 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
6836 8361 9.638176 GATATATACTCCCTCCGTTCCTAAATA 57.362 37.037 0.00 0.00 0.00 1.40
6837 8362 8.120538 TGATATATACTCCCTCCGTTCCTAAAT 58.879 37.037 0.00 0.00 0.00 1.40
6838 8363 7.472741 TGATATATACTCCCTCCGTTCCTAAA 58.527 38.462 0.00 0.00 0.00 1.85
6839 8364 7.036154 TGATATATACTCCCTCCGTTCCTAA 57.964 40.000 0.00 0.00 0.00 2.69
6840 8365 6.647461 TGATATATACTCCCTCCGTTCCTA 57.353 41.667 0.00 0.00 0.00 2.94
6841 8366 5.531753 TGATATATACTCCCTCCGTTCCT 57.468 43.478 0.00 0.00 0.00 3.36
6842 8367 6.793505 AATGATATATACTCCCTCCGTTCC 57.206 41.667 0.00 0.00 0.00 3.62
6843 8368 8.311836 TGAAAATGATATATACTCCCTCCGTTC 58.688 37.037 0.00 0.00 0.00 3.95
6844 8369 8.202461 TGAAAATGATATATACTCCCTCCGTT 57.798 34.615 0.00 0.00 0.00 4.44
6845 8370 7.792364 TGAAAATGATATATACTCCCTCCGT 57.208 36.000 0.00 0.00 0.00 4.69
6846 8371 8.260818 ACATGAAAATGATATATACTCCCTCCG 58.739 37.037 0.00 0.00 0.00 4.63
6847 8372 9.965902 AACATGAAAATGATATATACTCCCTCC 57.034 33.333 0.00 0.00 0.00 4.30
6914 8439 5.743398 CCCAACGTCAAATATACAAGCAATG 59.257 40.000 0.00 0.00 0.00 2.82
7152 8678 1.003116 GCTGCATATCAAGTTCCTGCG 60.003 52.381 0.00 0.00 35.63 5.18
7213 8739 9.103048 CAAATTACTTTAGCAGTTGTCGTTAAG 57.897 33.333 0.00 0.00 36.88 1.85
7217 8743 5.529800 ACCAAATTACTTTAGCAGTTGTCGT 59.470 36.000 0.00 0.00 36.88 4.34
7232 8758 9.836076 GTTTGGAAGAATAGTGTACCAAATTAC 57.164 33.333 0.00 0.00 44.94 1.89
7367 8893 4.663636 AAGATTCGGTTTCAACTTAGCG 57.336 40.909 0.00 0.00 36.67 4.26
7397 8923 1.414919 AGGACACAAAGTAGGTTGCGA 59.585 47.619 0.00 0.00 31.29 5.10
7606 9132 2.288666 GTGGTGTGAGAGCAGACAAAA 58.711 47.619 0.00 0.00 39.88 2.44
7689 9215 4.523083 TGAGACCTATACATGGGCAAAAC 58.477 43.478 0.00 0.00 34.31 2.43
8083 9613 7.601856 TGTTCCATTATCTGTTAAAAAGCAGG 58.398 34.615 0.00 0.00 33.81 4.85
8202 9732 8.451687 TTTGCATTGTTTCTATCTTTTGATCG 57.548 30.769 0.00 0.00 40.19 3.69
8228 9763 4.189639 AGAACCAAGAGTCCGTTGTATC 57.810 45.455 0.00 0.00 0.00 2.24
8304 9839 1.550976 ACAAGAGATGTCGGGAGGAAC 59.449 52.381 0.00 0.00 37.96 3.62
8472 10007 5.909621 ACATATGCAACTGATGAAAGCTT 57.090 34.783 1.58 0.00 0.00 3.74
8584 10140 1.837439 AGTCACAACCAACAGACTGGA 59.163 47.619 7.51 0.00 39.67 3.86
8611 10167 3.125146 GCGTGACTGAACTAATTGATGCA 59.875 43.478 0.00 0.00 0.00 3.96
8650 10509 0.531090 TCGTTCAACACCAACCCGAG 60.531 55.000 0.00 0.00 0.00 4.63
8652 10511 1.503818 CCTCGTTCAACACCAACCCG 61.504 60.000 0.00 0.00 0.00 5.28
8908 10838 6.471146 AGTATCTCAAAGATTCACTTGTGCT 58.529 36.000 0.00 0.00 38.98 4.40
8936 10873 9.825972 CGTTCTTCACAAATTATTATGTTGACT 57.174 29.630 0.00 0.00 0.00 3.41
8937 10874 8.575454 GCGTTCTTCACAAATTATTATGTTGAC 58.425 33.333 0.00 0.00 0.00 3.18
8938 10875 8.293157 TGCGTTCTTCACAAATTATTATGTTGA 58.707 29.630 0.00 0.00 0.00 3.18
8940 10877 9.075519 CATGCGTTCTTCACAAATTATTATGTT 57.924 29.630 0.00 0.00 0.00 2.71
8941 10878 8.458052 TCATGCGTTCTTCACAAATTATTATGT 58.542 29.630 0.00 0.00 0.00 2.29
9057 11020 3.247759 CAGACGGAGTATGCAGCCCAT 62.248 57.143 0.00 0.00 44.78 4.00
9089 11052 1.636148 AATTTGCATGACCTGTGGCT 58.364 45.000 0.00 0.00 0.00 4.75
9091 11054 5.277490 CGTCTATAATTTGCATGACCTGTGG 60.277 44.000 0.00 0.00 0.00 4.17
9092 11055 5.523552 TCGTCTATAATTTGCATGACCTGTG 59.476 40.000 0.00 0.00 0.00 3.66
9094 11057 6.791887 ATCGTCTATAATTTGCATGACCTG 57.208 37.500 0.00 0.00 0.00 4.00
9095 11058 7.220030 AGAATCGTCTATAATTTGCATGACCT 58.780 34.615 0.00 0.00 29.93 3.85
9106 11074 6.326583 TCCCACCAGAAAGAATCGTCTATAAT 59.673 38.462 0.00 0.00 32.16 1.28
9114 11082 1.407437 CCCTCCCACCAGAAAGAATCG 60.407 57.143 0.00 0.00 0.00 3.34
9306 11309 2.594303 CGCTGAAAGGCCACCACA 60.594 61.111 5.01 0.00 0.00 4.17
9309 11312 0.603065 AAATTCGCTGAAAGGCCACC 59.397 50.000 5.01 0.00 0.00 4.61
9310 11313 1.402852 GGAAATTCGCTGAAAGGCCAC 60.403 52.381 5.01 0.00 0.00 5.01
9311 11314 0.887933 GGAAATTCGCTGAAAGGCCA 59.112 50.000 5.01 0.00 0.00 5.36
9312 11315 1.133216 GAGGAAATTCGCTGAAAGGCC 59.867 52.381 0.00 0.00 0.00 5.19
9313 11316 1.202076 CGAGGAAATTCGCTGAAAGGC 60.202 52.381 0.00 0.00 33.39 4.35
9314 11317 2.346803 TCGAGGAAATTCGCTGAAAGG 58.653 47.619 0.00 0.00 40.29 3.11
9315 11318 2.222908 GCTCGAGGAAATTCGCTGAAAG 60.223 50.000 15.58 0.00 40.29 2.62
9316 11319 1.732259 GCTCGAGGAAATTCGCTGAAA 59.268 47.619 15.58 0.00 40.29 2.69
9317 11320 1.066858 AGCTCGAGGAAATTCGCTGAA 60.067 47.619 15.58 0.00 40.29 3.02
9318 11321 0.532573 AGCTCGAGGAAATTCGCTGA 59.467 50.000 15.58 0.00 40.29 4.26
9319 11322 0.926846 GAGCTCGAGGAAATTCGCTG 59.073 55.000 15.58 0.00 40.29 5.18
9320 11323 0.526524 CGAGCTCGAGGAAATTCGCT 60.527 55.000 32.06 2.44 43.02 4.93
9321 11324 1.920762 CGAGCTCGAGGAAATTCGC 59.079 57.895 32.06 0.00 43.02 4.70
9322 11325 1.483424 GGCGAGCTCGAGGAAATTCG 61.483 60.000 38.74 10.41 43.02 3.34
9323 11326 1.154814 GGGCGAGCTCGAGGAAATTC 61.155 60.000 38.74 18.07 43.02 2.17
9324 11327 1.153349 GGGCGAGCTCGAGGAAATT 60.153 57.895 38.74 0.00 43.02 1.82
9325 11328 2.501610 GGGCGAGCTCGAGGAAAT 59.498 61.111 38.74 0.00 43.02 2.17
9326 11329 3.771160 GGGGCGAGCTCGAGGAAA 61.771 66.667 38.74 0.00 43.02 3.13
9654 11709 3.083349 CCGCCCTGACCCAGATCA 61.083 66.667 0.00 0.00 32.44 2.92
9690 11745 1.378762 CCACCGGAGAACAACCCAT 59.621 57.895 9.46 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.