Multiple sequence alignment - TraesCS5D01G203400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G203400 chr5D 100.000 2711 0 0 1 2711 308634111 308631401 0.000000e+00 5007.0
1 TraesCS5D01G203400 chr5A 95.157 2044 74 7 682 2711 389159358 389161390 0.000000e+00 3203.0
2 TraesCS5D01G203400 chr5A 89.939 656 56 5 50 697 389158656 389159309 0.000000e+00 837.0
3 TraesCS5D01G203400 chr5B 94.561 1912 91 11 808 2711 353938166 353936260 0.000000e+00 2942.0
4 TraesCS5D01G203400 chr5B 95.074 203 10 0 1 203 353983392 353983190 1.210000e-83 320.0
5 TraesCS5D01G203400 chr5B 85.946 185 18 7 583 764 353938344 353938165 9.910000e-45 191.0
6 TraesCS5D01G203400 chr3B 89.286 56 2 4 690 743 12639654 12639707 1.740000e-07 67.6
7 TraesCS5D01G203400 chr3A 91.837 49 1 3 690 736 15964142 15964095 6.270000e-07 65.8
8 TraesCS5D01G203400 chr1B 97.222 36 1 0 443 478 606692049 606692014 8.100000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G203400 chr5D 308631401 308634111 2710 True 5007.0 5007 100.0000 1 2711 1 chr5D.!!$R1 2710
1 TraesCS5D01G203400 chr5A 389158656 389161390 2734 False 2020.0 3203 92.5480 50 2711 2 chr5A.!!$F1 2661
2 TraesCS5D01G203400 chr5B 353936260 353938344 2084 True 1566.5 2942 90.2535 583 2711 2 chr5B.!!$R2 2128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.675083 TGCCATTGGAGCTTGTGTTG 59.325 50.0 6.95 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2052 2.843401 ATACCGTGTTGTGTGCCTTA 57.157 45.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.787823 GCAAAATTAAAGCACTCAAGTCTAG 57.212 36.000 0.00 0.00 0.00 2.43
25 26 7.584987 GCAAAATTAAAGCACTCAAGTCTAGA 58.415 34.615 0.00 0.00 0.00 2.43
26 27 8.076178 GCAAAATTAAAGCACTCAAGTCTAGAA 58.924 33.333 0.00 0.00 0.00 2.10
27 28 9.387123 CAAAATTAAAGCACTCAAGTCTAGAAC 57.613 33.333 0.00 0.00 0.00 3.01
28 29 8.677148 AAATTAAAGCACTCAAGTCTAGAACA 57.323 30.769 0.00 0.00 0.00 3.18
29 30 8.677148 AATTAAAGCACTCAAGTCTAGAACAA 57.323 30.769 0.00 0.00 0.00 2.83
30 31 8.677148 ATTAAAGCACTCAAGTCTAGAACAAA 57.323 30.769 0.00 0.00 0.00 2.83
31 32 6.610741 AAAGCACTCAAGTCTAGAACAAAG 57.389 37.500 0.00 0.00 0.00 2.77
32 33 5.283457 AGCACTCAAGTCTAGAACAAAGT 57.717 39.130 0.00 0.00 0.00 2.66
33 34 5.293560 AGCACTCAAGTCTAGAACAAAGTC 58.706 41.667 0.00 0.00 0.00 3.01
34 35 5.050490 GCACTCAAGTCTAGAACAAAGTCA 58.950 41.667 0.00 0.00 0.00 3.41
35 36 5.523916 GCACTCAAGTCTAGAACAAAGTCAA 59.476 40.000 0.00 0.00 0.00 3.18
36 37 6.510317 GCACTCAAGTCTAGAACAAAGTCAAC 60.510 42.308 0.00 0.00 0.00 3.18
37 38 6.535150 CACTCAAGTCTAGAACAAAGTCAACA 59.465 38.462 0.00 0.00 0.00 3.33
38 39 7.064609 CACTCAAGTCTAGAACAAAGTCAACAA 59.935 37.037 0.00 0.00 0.00 2.83
39 40 7.606456 ACTCAAGTCTAGAACAAAGTCAACAAA 59.394 33.333 0.00 0.00 0.00 2.83
40 41 7.748847 TCAAGTCTAGAACAAAGTCAACAAAC 58.251 34.615 0.00 0.00 0.00 2.93
41 42 6.345920 AGTCTAGAACAAAGTCAACAAACG 57.654 37.500 0.00 0.00 0.00 3.60
42 43 5.873164 AGTCTAGAACAAAGTCAACAAACGT 59.127 36.000 0.00 0.00 0.00 3.99
43 44 6.370718 AGTCTAGAACAAAGTCAACAAACGTT 59.629 34.615 0.00 0.00 0.00 3.99
44 45 7.546667 AGTCTAGAACAAAGTCAACAAACGTTA 59.453 33.333 0.00 0.00 0.00 3.18
45 46 8.333186 GTCTAGAACAAAGTCAACAAACGTTAT 58.667 33.333 0.00 0.00 0.00 1.89
46 47 9.531942 TCTAGAACAAAGTCAACAAACGTTATA 57.468 29.630 0.00 0.00 0.00 0.98
47 48 9.793245 CTAGAACAAAGTCAACAAACGTTATAG 57.207 33.333 0.00 0.00 0.00 1.31
48 49 7.636326 AGAACAAAGTCAACAAACGTTATAGG 58.364 34.615 0.00 0.00 0.00 2.57
109 110 9.027129 CAATTTATGCATTAGTTGACTCAATGG 57.973 33.333 13.77 0.00 31.68 3.16
113 114 5.771469 TGCATTAGTTGACTCAATGGTTTG 58.229 37.500 0.00 0.00 31.68 2.93
162 163 8.557864 TGAATTTTGAAATAATGCAACAACCTG 58.442 29.630 0.00 0.00 0.00 4.00
171 172 1.209019 TGCAACAACCTGGTTTTGCAT 59.791 42.857 33.35 12.20 40.58 3.96
185 186 7.542130 CCTGGTTTTGCATGTAGAATTTAGAAC 59.458 37.037 0.00 0.00 0.00 3.01
187 188 6.526674 GGTTTTGCATGTAGAATTTAGAACCG 59.473 38.462 0.00 0.00 0.00 4.44
193 194 4.406069 TGTAGAATTTAGAACCGTCGACG 58.594 43.478 30.33 30.33 39.44 5.12
200 201 2.279650 AACCGTCGACGTGTTGGG 60.280 61.111 33.49 20.53 37.74 4.12
203 204 1.443194 CCGTCGACGTGTTGGGTAG 60.443 63.158 33.49 13.35 37.74 3.18
236 237 1.014352 CTATGGTGCGCCTTACAACC 58.986 55.000 18.96 4.93 35.27 3.77
253 254 9.238368 CCTTACAACCACCTTTTATATCTTCAA 57.762 33.333 0.00 0.00 0.00 2.69
278 279 7.244192 ACTTTTATAAAGTCTTTCTGCGATGC 58.756 34.615 0.00 0.00 0.00 3.91
295 296 0.675083 TGCCATTGGAGCTTGTGTTG 59.325 50.000 6.95 0.00 0.00 3.33
321 322 3.204306 TCTCACATCCATCATCTTGGC 57.796 47.619 0.00 0.00 36.66 4.52
399 400 4.941263 TGCTCATTTAGTCGGCTAAACATT 59.059 37.500 23.55 6.34 46.27 2.71
402 403 7.072030 GCTCATTTAGTCGGCTAAACATTATG 58.928 38.462 23.55 17.01 46.27 1.90
413 414 6.146184 CGGCTAAACATTATGACCTATGTCTG 59.854 42.308 0.00 0.00 42.28 3.51
416 417 8.715998 GCTAAACATTATGACCTATGTCTGATG 58.284 37.037 0.00 4.29 42.28 3.07
422 423 8.588472 CATTATGACCTATGTCTGATGGTCTTA 58.412 37.037 16.77 13.54 46.50 2.10
442 443 1.628846 ACCAAATAGAACGGCACTCCT 59.371 47.619 0.00 0.00 0.00 3.69
444 445 2.678336 CCAAATAGAACGGCACTCCTTC 59.322 50.000 0.00 0.00 0.00 3.46
471 472 5.215160 CCCATATTAATTGTCGCTGCTTTC 58.785 41.667 0.00 0.00 0.00 2.62
473 474 5.501715 CATATTAATTGTCGCTGCTTTCGT 58.498 37.500 0.00 0.00 0.00 3.85
477 478 1.573026 TTGTCGCTGCTTTCGTACAA 58.427 45.000 0.00 0.00 0.00 2.41
478 479 1.790755 TGTCGCTGCTTTCGTACAAT 58.209 45.000 0.00 0.00 0.00 2.71
483 484 2.668457 CGCTGCTTTCGTACAATTCTCT 59.332 45.455 0.00 0.00 0.00 3.10
486 487 4.152402 GCTGCTTTCGTACAATTCTCTGAA 59.848 41.667 0.00 0.00 0.00 3.02
492 493 4.720090 TCGTACAATTCTCTGAACGAGTC 58.280 43.478 0.00 0.00 40.75 3.36
539 540 8.586570 AAAGAAAAATGTATCAATGCGTTTCA 57.413 26.923 0.00 0.00 31.78 2.69
541 542 8.586570 AGAAAAATGTATCAATGCGTTTCAAA 57.413 26.923 0.00 0.00 31.78 2.69
624 633 6.828785 AGAAGGCAATCTTACACCGAAATATT 59.171 34.615 0.00 0.00 35.50 1.28
629 638 8.015658 GGCAATCTTACACCGAAATATTATCAC 58.984 37.037 0.00 0.00 0.00 3.06
666 675 8.795786 TTTGTAAAGTTTGACATGCTATGTTC 57.204 30.769 0.00 0.00 45.03 3.18
670 679 9.463443 GTAAAGTTTGACATGCTATGTTCTTTT 57.537 29.630 0.00 11.02 45.03 2.27
785 858 1.318576 GCCTTTGCCACTGTAACTGT 58.681 50.000 0.00 0.00 0.00 3.55
786 859 2.500229 GCCTTTGCCACTGTAACTGTA 58.500 47.619 0.00 0.00 0.00 2.74
787 860 2.882137 GCCTTTGCCACTGTAACTGTAA 59.118 45.455 0.00 0.00 0.00 2.41
1410 1494 3.471806 GCGGGGGTCCTCTTCCTC 61.472 72.222 0.00 0.00 0.00 3.71
1668 1752 1.587054 GGTGGTCAGAGAGGTCGTG 59.413 63.158 0.00 0.00 0.00 4.35
1747 1832 7.466746 TGTTTGCTTTATCTCCAGCTTAATT 57.533 32.000 0.00 0.00 36.92 1.40
1784 1869 9.739276 ATTTTTGAACCTCTACATGAGATTGTA 57.261 29.630 0.00 0.00 45.39 2.41
1811 1896 8.638565 GTTGTTGATACGATGATTTCCTTTTTG 58.361 33.333 0.00 0.00 0.00 2.44
1856 1942 5.588648 TGGTGAATTATTAGCAACACTAGGC 59.411 40.000 0.00 0.00 30.79 3.93
1860 1946 5.540400 ATTATTAGCAACACTAGGCGGTA 57.460 39.130 0.00 0.00 34.54 4.02
1909 1995 5.276440 AGGTGGACTAATCAGAAGATGACT 58.724 41.667 0.00 0.00 41.91 3.41
1932 2018 7.863666 ACTGGTCATTTTTGTATTTGCAAATG 58.136 30.769 30.43 15.37 38.05 2.32
1935 2021 9.499479 TGGTCATTTTTGTATTTGCAAATGTAT 57.501 25.926 30.43 11.25 38.05 2.29
1981 2067 7.965655 TGAATTAATTATAAGGCACACAACACG 59.034 33.333 0.00 0.00 0.00 4.49
2107 2195 4.720046 ACATTAGAGCTAGAGGTCGATGA 58.280 43.478 23.04 6.87 46.33 2.92
2153 2243 7.446013 ACTCTACACTATCAGAGGCTACATAAC 59.554 40.741 3.85 0.00 42.18 1.89
2268 2361 7.381139 ACAAAAATTGAAGCACGGTAAATAGTG 59.619 33.333 0.00 0.00 41.01 2.74
2598 2691 6.600032 GGTTGTACAACATTACATATGGGTGA 59.400 38.462 33.42 0.00 42.85 4.02
2599 2692 7.284489 GGTTGTACAACATTACATATGGGTGAT 59.716 37.037 33.42 0.00 42.85 3.06
2612 2705 6.270927 ACATATGGGTGATACTATTCTGCACT 59.729 38.462 7.80 0.00 0.00 4.40
2627 2720 4.495422 TCTGCACTGTAACTAAGCTAAGC 58.505 43.478 0.00 0.00 0.00 3.09
2703 2796 5.815581 AGTGTAGGATTGGCTATGACAAAA 58.184 37.500 0.00 0.00 32.77 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.584987 TCTAGACTTGAGTGCTTTAATTTTGC 58.415 34.615 0.00 0.00 0.00 3.68
1 2 9.387123 GTTCTAGACTTGAGTGCTTTAATTTTG 57.613 33.333 0.00 0.00 0.00 2.44
2 3 9.120538 TGTTCTAGACTTGAGTGCTTTAATTTT 57.879 29.630 0.00 0.00 0.00 1.82
3 4 8.677148 TGTTCTAGACTTGAGTGCTTTAATTT 57.323 30.769 0.00 0.00 0.00 1.82
4 5 8.677148 TTGTTCTAGACTTGAGTGCTTTAATT 57.323 30.769 0.00 0.00 0.00 1.40
5 6 8.677148 TTTGTTCTAGACTTGAGTGCTTTAAT 57.323 30.769 0.00 0.00 0.00 1.40
6 7 7.769044 ACTTTGTTCTAGACTTGAGTGCTTTAA 59.231 33.333 0.00 0.00 0.00 1.52
7 8 7.272978 ACTTTGTTCTAGACTTGAGTGCTTTA 58.727 34.615 0.00 0.00 0.00 1.85
8 9 6.116126 ACTTTGTTCTAGACTTGAGTGCTTT 58.884 36.000 0.00 0.00 0.00 3.51
9 10 5.675538 ACTTTGTTCTAGACTTGAGTGCTT 58.324 37.500 0.00 0.00 0.00 3.91
10 11 5.163405 TGACTTTGTTCTAGACTTGAGTGCT 60.163 40.000 0.00 0.00 0.00 4.40
11 12 5.050490 TGACTTTGTTCTAGACTTGAGTGC 58.950 41.667 0.00 0.00 0.00 4.40
12 13 6.535150 TGTTGACTTTGTTCTAGACTTGAGTG 59.465 38.462 0.00 0.00 0.00 3.51
13 14 6.640518 TGTTGACTTTGTTCTAGACTTGAGT 58.359 36.000 0.00 0.00 0.00 3.41
14 15 7.539712 TTGTTGACTTTGTTCTAGACTTGAG 57.460 36.000 0.00 0.00 0.00 3.02
15 16 7.412563 CGTTTGTTGACTTTGTTCTAGACTTGA 60.413 37.037 0.00 0.00 0.00 3.02
16 17 6.682863 CGTTTGTTGACTTTGTTCTAGACTTG 59.317 38.462 0.00 0.00 0.00 3.16
17 18 6.370718 ACGTTTGTTGACTTTGTTCTAGACTT 59.629 34.615 0.00 0.00 0.00 3.01
18 19 5.873164 ACGTTTGTTGACTTTGTTCTAGACT 59.127 36.000 0.00 0.00 0.00 3.24
19 20 6.103222 ACGTTTGTTGACTTTGTTCTAGAC 57.897 37.500 0.00 0.00 0.00 2.59
20 21 6.730960 AACGTTTGTTGACTTTGTTCTAGA 57.269 33.333 0.00 0.00 36.81 2.43
21 22 9.793245 CTATAACGTTTGTTGACTTTGTTCTAG 57.207 33.333 5.91 0.00 39.12 2.43
22 23 8.767085 CCTATAACGTTTGTTGACTTTGTTCTA 58.233 33.333 5.91 0.00 39.12 2.10
23 24 7.636326 CCTATAACGTTTGTTGACTTTGTTCT 58.364 34.615 5.91 0.00 39.12 3.01
24 25 6.358822 GCCTATAACGTTTGTTGACTTTGTTC 59.641 38.462 5.91 0.00 39.12 3.18
25 26 6.038936 AGCCTATAACGTTTGTTGACTTTGTT 59.961 34.615 5.91 0.00 39.12 2.83
26 27 5.529800 AGCCTATAACGTTTGTTGACTTTGT 59.470 36.000 5.91 0.00 39.12 2.83
27 28 5.997385 AGCCTATAACGTTTGTTGACTTTG 58.003 37.500 5.91 0.00 39.12 2.77
28 29 6.707161 TGTAGCCTATAACGTTTGTTGACTTT 59.293 34.615 5.91 0.00 39.12 2.66
29 30 6.225318 TGTAGCCTATAACGTTTGTTGACTT 58.775 36.000 5.91 0.00 39.12 3.01
30 31 5.786311 TGTAGCCTATAACGTTTGTTGACT 58.214 37.500 5.91 0.30 39.12 3.41
31 32 6.657836 ATGTAGCCTATAACGTTTGTTGAC 57.342 37.500 5.91 0.00 39.12 3.18
32 33 7.010738 GCTTATGTAGCCTATAACGTTTGTTGA 59.989 37.037 5.91 0.00 44.48 3.18
33 34 7.123830 GCTTATGTAGCCTATAACGTTTGTTG 58.876 38.462 5.91 0.00 44.48 3.33
34 35 7.242914 GCTTATGTAGCCTATAACGTTTGTT 57.757 36.000 5.91 0.00 44.48 2.83
35 36 6.839820 GCTTATGTAGCCTATAACGTTTGT 57.160 37.500 5.91 0.00 44.48 2.83
65 66 2.440539 TGACTTCCTCGAGCTTGTTC 57.559 50.000 6.99 0.00 0.00 3.18
136 137 8.557864 CAGGTTGTTGCATTATTTCAAAATTCA 58.442 29.630 0.00 0.00 0.00 2.57
162 163 6.526674 CGGTTCTAAATTCTACATGCAAAACC 59.473 38.462 0.00 0.00 0.00 3.27
171 172 4.083324 ACGTCGACGGTTCTAAATTCTACA 60.083 41.667 37.89 0.00 44.95 2.74
185 186 1.443194 CTACCCAACACGTCGACGG 60.443 63.158 37.89 28.36 44.95 4.79
187 188 0.387750 GTCCTACCCAACACGTCGAC 60.388 60.000 5.18 5.18 0.00 4.20
193 194 3.836562 TCCTCTTTAGTCCTACCCAACAC 59.163 47.826 0.00 0.00 0.00 3.32
200 201 6.294843 GCACCATAGATCCTCTTTAGTCCTAC 60.295 46.154 0.00 0.00 0.00 3.18
203 204 4.559704 CGCACCATAGATCCTCTTTAGTCC 60.560 50.000 0.00 0.00 0.00 3.85
226 227 7.338449 TGAAGATATAAAAGGTGGTTGTAAGGC 59.662 37.037 0.00 0.00 0.00 4.35
253 254 7.244192 GCATCGCAGAAAGACTTTATAAAAGT 58.756 34.615 4.77 4.77 43.58 2.66
269 270 1.820906 GCTCCAATGGCATCGCAGA 60.821 57.895 0.00 0.00 45.75 4.26
271 272 1.378911 AAGCTCCAATGGCATCGCA 60.379 52.632 0.00 0.00 0.00 5.10
278 279 2.288395 GGAACAACACAAGCTCCAATGG 60.288 50.000 0.00 0.00 0.00 3.16
295 296 4.970711 AGATGATGGATGTGAGATGGAAC 58.029 43.478 0.00 0.00 0.00 3.62
362 363 8.142994 ACTAAATGAGCATAAATACAAGACGG 57.857 34.615 0.00 0.00 0.00 4.79
363 364 7.998767 CGACTAAATGAGCATAAATACAAGACG 59.001 37.037 0.00 0.00 0.00 4.18
402 403 4.649674 TGGTAAGACCATCAGACATAGGTC 59.350 45.833 0.00 0.00 44.79 3.85
416 417 3.373130 GTGCCGTTCTATTTGGTAAGACC 59.627 47.826 0.00 0.00 39.22 3.85
422 423 1.628846 AGGAGTGCCGTTCTATTTGGT 59.371 47.619 0.00 0.00 39.96 3.67
448 449 4.836125 AAGCAGCGACAATTAATATGGG 57.164 40.909 0.00 0.00 0.00 4.00
486 487 8.856490 TTACTTAAACTTAGAAAACGACTCGT 57.144 30.769 0.00 0.00 43.97 4.18
591 599 7.084486 GGTGTAAGATTGCCTTCTGTTTTAAG 58.916 38.462 0.00 0.00 36.34 1.85
624 633 7.453126 ACTTTACAAATCCCAAACCATGTGATA 59.547 33.333 0.00 0.00 0.00 2.15
629 638 6.989169 TCAAACTTTACAAATCCCAAACCATG 59.011 34.615 0.00 0.00 0.00 3.66
670 679 8.442374 AGAGTTACCTGAGTTATTAACCCAAAA 58.558 33.333 2.92 0.00 0.00 2.44
674 683 8.921205 TGATAGAGTTACCTGAGTTATTAACCC 58.079 37.037 2.92 0.00 0.00 4.11
737 810 3.817647 AGCTTTGATGTTCACCTGAGTTC 59.182 43.478 0.00 0.00 0.00 3.01
743 816 3.777106 TGAGAGCTTTGATGTTCACCT 57.223 42.857 0.00 0.00 0.00 4.00
747 820 2.163211 GGCCTTGAGAGCTTTGATGTTC 59.837 50.000 0.00 0.00 0.00 3.18
782 855 0.517316 GCCTTGGTTGCGACTTACAG 59.483 55.000 3.59 0.00 0.00 2.74
783 856 2.624169 GCCTTGGTTGCGACTTACA 58.376 52.632 3.59 0.00 0.00 2.41
1773 1858 7.755582 TCGTATCAACAACTACAATCTCATG 57.244 36.000 0.00 0.00 0.00 3.07
1784 1869 7.687941 AAAGGAAATCATCGTATCAACAACT 57.312 32.000 0.00 0.00 0.00 3.16
1811 1896 8.677300 TCACCAAAAAGAATCTACATATTCAGC 58.323 33.333 0.00 0.00 38.16 4.26
1856 1942 6.705825 TCAACACATTATCATTCCATCTACCG 59.294 38.462 0.00 0.00 0.00 4.02
1860 1946 9.192642 TCAATTCAACACATTATCATTCCATCT 57.807 29.630 0.00 0.00 0.00 2.90
1909 1995 7.798596 ACATTTGCAAATACAAAAATGACCA 57.201 28.000 23.69 0.00 42.45 4.02
1956 2042 7.431084 CCGTGTTGTGTGCCTTATAATTAATTC 59.569 37.037 3.39 0.00 0.00 2.17
1966 2052 2.843401 ATACCGTGTTGTGTGCCTTA 57.157 45.000 0.00 0.00 0.00 2.69
1975 2061 5.873179 AACACATCCTTAATACCGTGTTG 57.127 39.130 5.03 0.00 43.73 3.33
2003 2089 5.006358 CCGTACAATCAGGTAGCAACATAAC 59.994 44.000 0.00 0.00 0.00 1.89
2093 2181 3.735237 TCCAAATCATCGACCTCTAGC 57.265 47.619 0.00 0.00 0.00 3.42
2107 2195 9.477484 GTAGAGTTGTATTGACGATATCCAAAT 57.523 33.333 0.00 0.00 0.00 2.32
2153 2243 7.290857 ACGACATAGTAAGTGTGCAATTTAG 57.709 36.000 0.00 0.00 0.00 1.85
2268 2361 9.436957 TCTGATTGACCTAATTTGACTAACTTC 57.563 33.333 0.00 0.00 0.00 3.01
2529 2622 7.226523 TGTGGCACAATATAAGCACTATAACAG 59.773 37.037 19.74 0.00 44.16 3.16
2538 2631 3.631686 GGACATGTGGCACAATATAAGCA 59.368 43.478 25.95 0.00 44.16 3.91
2598 2691 8.012957 AGCTTAGTTACAGTGCAGAATAGTAT 57.987 34.615 0.00 0.00 0.00 2.12
2599 2692 7.406031 AGCTTAGTTACAGTGCAGAATAGTA 57.594 36.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.