Multiple sequence alignment - TraesCS5D01G202500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G202500 chr5D 100.000 6507 0 0 1 6507 307364827 307358321 0.000000e+00 12017.0
1 TraesCS5D01G202500 chr5D 100.000 35 0 0 6177 6211 561801660 561801694 1.510000e-06 65.8
2 TraesCS5D01G202500 chr5B 91.163 2546 149 33 3492 6001 352390078 352387573 0.000000e+00 3386.0
3 TraesCS5D01G202500 chr5B 93.318 1317 51 15 1015 2320 352391555 352390265 0.000000e+00 1910.0
4 TraesCS5D01G202500 chr5B 83.503 588 33 14 5957 6496 352387440 352386869 2.110000e-134 490.0
5 TraesCS5D01G202500 chr5B 82.119 302 35 14 5569 5857 448286017 448286312 2.340000e-59 241.0
6 TraesCS5D01G202500 chr5B 88.199 161 11 2 2419 2579 352390263 352390111 1.110000e-42 185.0
7 TraesCS5D01G202500 chr5B 81.111 180 30 4 6217 6393 418379682 418379504 2.450000e-29 141.0
8 TraesCS5D01G202500 chr5B 75.549 319 54 15 5553 5858 586395312 586395005 1.140000e-27 135.0
9 TraesCS5D01G202500 chr5A 89.467 1481 89 28 3447 4903 390235980 390237417 0.000000e+00 1808.0
10 TraesCS5D01G202500 chr5A 93.240 932 30 13 927 1842 390234202 390235116 0.000000e+00 1341.0
11 TraesCS5D01G202500 chr5A 94.894 803 32 6 4926 5720 390237410 390238211 0.000000e+00 1247.0
12 TraesCS5D01G202500 chr5A 90.795 478 27 8 1844 2320 390235315 390235776 1.990000e-174 623.0
13 TraesCS5D01G202500 chr5A 87.702 309 22 5 6207 6507 390238635 390238935 4.830000e-91 346.0
14 TraesCS5D01G202500 chr5A 90.805 174 16 0 2420 2593 390235814 390235987 3.920000e-57 233.0
15 TraesCS5D01G202500 chr5A 83.069 189 30 2 6207 6394 454825765 454825578 3.120000e-38 171.0
16 TraesCS5D01G202500 chr5A 81.865 193 33 2 6218 6408 361904981 361904789 1.880000e-35 161.0
17 TraesCS5D01G202500 chr5A 86.667 105 10 2 2316 2418 491734847 491734949 5.330000e-21 113.0
18 TraesCS5D01G202500 chr6D 98.847 867 8 1 2592 3456 136701743 136700877 0.000000e+00 1544.0
19 TraesCS5D01G202500 chr6D 92.915 861 53 3 2592 3446 19640299 19641157 0.000000e+00 1245.0
20 TraesCS5D01G202500 chr6D 80.749 187 32 3 6218 6402 276119632 276119448 6.800000e-30 143.0
21 TraesCS5D01G202500 chr6D 84.892 139 10 8 153 283 78339619 78339484 5.290000e-26 130.0
22 TraesCS5D01G202500 chr6D 84.173 139 11 8 153 283 68845327 68845462 2.460000e-24 124.0
23 TraesCS5D01G202500 chr6D 84.173 139 11 8 153 283 78341045 78341180 2.460000e-24 124.0
24 TraesCS5D01G202500 chr6D 84.173 139 11 8 153 283 466914682 466914547 2.460000e-24 124.0
25 TraesCS5D01G202500 chr6D 86.667 105 11 2 2317 2419 412044532 412044635 5.330000e-21 113.0
26 TraesCS5D01G202500 chr7D 97.783 857 15 2 2591 3447 160632622 160633474 0.000000e+00 1474.0
27 TraesCS5D01G202500 chr7D 82.927 123 16 3 2300 2419 803295 803415 8.920000e-19 106.0
28 TraesCS5D01G202500 chr1D 97.427 855 22 0 2592 3446 26267178 26268032 0.000000e+00 1458.0
29 TraesCS5D01G202500 chr1D 81.529 157 28 1 6219 6374 252640502 252640658 1.900000e-25 128.0
30 TraesCS5D01G202500 chr1D 84.173 139 11 8 153 283 493229112 493229247 2.460000e-24 124.0
31 TraesCS5D01G202500 chr1D 86.408 103 11 2 2318 2418 360478834 360478935 6.900000e-20 110.0
32 TraesCS5D01G202500 chr6B 94.077 861 43 3 2593 3446 610810661 610811520 0.000000e+00 1301.0
33 TraesCS5D01G202500 chr6B 93.843 471 21 4 455 925 704976491 704976953 0.000000e+00 702.0
34 TraesCS5D01G202500 chr6B 89.503 181 8 8 279 457 704975928 704976099 1.100000e-52 219.0
35 TraesCS5D01G202500 chr6B 83.333 138 14 6 153 283 659334149 659334284 1.150000e-22 119.0
36 TraesCS5D01G202500 chr1B 93.968 862 40 4 2594 3447 683466242 683467099 0.000000e+00 1293.0
37 TraesCS5D01G202500 chr1B 91.692 650 40 9 279 926 474843509 474842872 0.000000e+00 889.0
38 TraesCS5D01G202500 chr1B 90.977 665 34 12 279 925 396535180 396535836 0.000000e+00 872.0
39 TraesCS5D01G202500 chr1B 84.030 263 31 6 5553 5813 593225550 593225297 6.520000e-60 243.0
40 TraesCS5D01G202500 chr1B 92.701 137 10 0 788 924 7090847 7090983 1.430000e-46 198.0
41 TraesCS5D01G202500 chr2A 93.975 863 36 7 2594 3449 582952629 582953482 0.000000e+00 1291.0
42 TraesCS5D01G202500 chr4D 92.791 860 53 4 2594 3447 138278054 138277198 0.000000e+00 1236.0
43 TraesCS5D01G202500 chr4D 88.179 313 10 11 1 287 1636980 1637291 1.340000e-91 348.0
44 TraesCS5D01G202500 chr4D 84.615 247 28 7 5568 5813 507755619 507755856 3.030000e-58 237.0
45 TraesCS5D01G202500 chr4D 93.750 80 5 0 279 358 1637365 1637444 3.190000e-23 121.0
46 TraesCS5D01G202500 chr1A 92.674 860 56 2 2593 3446 226433894 226433036 0.000000e+00 1232.0
47 TraesCS5D01G202500 chr1A 83.784 296 39 8 5586 5878 359978005 359978294 8.310000e-69 272.0
48 TraesCS5D01G202500 chr7B 91.880 665 30 11 279 925 688778799 688779457 0.000000e+00 907.0
49 TraesCS5D01G202500 chr7B 81.844 347 37 17 5552 5878 131074895 131075235 1.080000e-67 268.0
50 TraesCS5D01G202500 chr7B 83.209 268 31 12 5555 5818 377900194 377900451 3.920000e-57 233.0
51 TraesCS5D01G202500 chr7A 89.764 381 13 10 279 641 510655441 510655813 1.280000e-126 464.0
52 TraesCS5D01G202500 chr7A 87.224 407 40 10 529 928 66407643 66407242 2.770000e-123 453.0
53 TraesCS5D01G202500 chr7A 93.151 292 20 0 634 925 510669389 510669680 4.660000e-116 429.0
54 TraesCS5D01G202500 chr7A 87.781 311 10 13 1 283 510655054 510655364 8.080000e-89 339.0
55 TraesCS5D01G202500 chr7A 84.545 110 7 7 2317 2418 125469171 125469278 4.150000e-17 100.0
56 TraesCS5D01G202500 chr2B 80.938 341 46 15 5555 5879 17464863 17465200 1.080000e-62 252.0
57 TraesCS5D01G202500 chr3D 84.030 263 33 8 5555 5812 138011406 138011664 1.810000e-60 244.0
58 TraesCS5D01G202500 chr3D 83.871 124 7 7 2315 2425 609740908 609741031 8.920000e-19 106.0
59 TraesCS5D01G202500 chrUn 84.971 173 25 1 754 925 28792599 28792427 2.410000e-39 174.0
60 TraesCS5D01G202500 chr3A 84.615 169 25 1 6243 6410 513538016 513538184 4.040000e-37 167.0
61 TraesCS5D01G202500 chr3A 83.636 165 26 1 754 917 571807679 571807843 3.140000e-33 154.0
62 TraesCS5D01G202500 chr3B 81.579 152 23 5 6218 6365 817173956 817173806 3.190000e-23 121.0
63 TraesCS5D01G202500 chr3B 84.112 107 11 5 2320 2422 186752882 186752778 1.490000e-16 99.0
64 TraesCS5D01G202500 chr6A 87.255 102 10 2 2320 2418 591435579 591435680 5.330000e-21 113.0
65 TraesCS5D01G202500 chr6A 85.437 103 10 4 2320 2418 591435322 591435423 1.150000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G202500 chr5D 307358321 307364827 6506 True 12017.00 12017 100.00000 1 6507 1 chr5D.!!$R1 6506
1 TraesCS5D01G202500 chr5B 352386869 352391555 4686 True 1492.75 3386 89.04575 1015 6496 4 chr5B.!!$R3 5481
2 TraesCS5D01G202500 chr5A 390234202 390238935 4733 False 933.00 1808 91.15050 927 6507 6 chr5A.!!$F2 5580
3 TraesCS5D01G202500 chr6D 136700877 136701743 866 True 1544.00 1544 98.84700 2592 3456 1 chr6D.!!$R2 864
4 TraesCS5D01G202500 chr6D 19640299 19641157 858 False 1245.00 1245 92.91500 2592 3446 1 chr6D.!!$F1 854
5 TraesCS5D01G202500 chr7D 160632622 160633474 852 False 1474.00 1474 97.78300 2591 3447 1 chr7D.!!$F2 856
6 TraesCS5D01G202500 chr1D 26267178 26268032 854 False 1458.00 1458 97.42700 2592 3446 1 chr1D.!!$F1 854
7 TraesCS5D01G202500 chr6B 610810661 610811520 859 False 1301.00 1301 94.07700 2593 3446 1 chr6B.!!$F1 853
8 TraesCS5D01G202500 chr6B 704975928 704976953 1025 False 460.50 702 91.67300 279 925 2 chr6B.!!$F3 646
9 TraesCS5D01G202500 chr1B 683466242 683467099 857 False 1293.00 1293 93.96800 2594 3447 1 chr1B.!!$F3 853
10 TraesCS5D01G202500 chr1B 474842872 474843509 637 True 889.00 889 91.69200 279 926 1 chr1B.!!$R1 647
11 TraesCS5D01G202500 chr1B 396535180 396535836 656 False 872.00 872 90.97700 279 925 1 chr1B.!!$F2 646
12 TraesCS5D01G202500 chr2A 582952629 582953482 853 False 1291.00 1291 93.97500 2594 3449 1 chr2A.!!$F1 855
13 TraesCS5D01G202500 chr4D 138277198 138278054 856 True 1236.00 1236 92.79100 2594 3447 1 chr4D.!!$R1 853
14 TraesCS5D01G202500 chr1A 226433036 226433894 858 True 1232.00 1232 92.67400 2593 3446 1 chr1A.!!$R1 853
15 TraesCS5D01G202500 chr7B 688778799 688779457 658 False 907.00 907 91.88000 279 925 1 chr7B.!!$F3 646
16 TraesCS5D01G202500 chr7A 510655054 510655813 759 False 401.50 464 88.77250 1 641 2 chr7A.!!$F3 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 1301 0.666577 AGCTCAACCACGTACTTCGC 60.667 55.0 0.00 0.0 44.19 4.70 F
1009 1531 0.175760 TCCTAGCCAGCAAAGCGTAG 59.824 55.0 0.00 0.0 34.64 3.51 F
1867 2609 0.257328 TGGTTTGCACCTGTCTTCCA 59.743 50.0 0.00 0.0 44.61 3.53 F
2334 3086 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.0 0.00 0.0 0.00 4.37 F
3469 4273 0.109781 CAACTTATGCGCCGCTGTTT 60.110 50.0 11.67 0.0 0.00 2.83 F
3939 4769 0.108207 TTGTAACCCGCCGAAAAGGA 59.892 50.0 0.00 0.0 45.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2402 3154 2.176889 CTTTCTACTTCCTCCGTCCCA 58.823 52.381 0.00 0.00 0.00 4.37 R
2403 3155 2.177734 ACTTTCTACTTCCTCCGTCCC 58.822 52.381 0.00 0.00 0.00 4.46 R
3450 4254 0.109781 AAACAGCGGCGCATAAGTTG 60.110 50.000 35.02 23.67 0.00 3.16 R
3796 4618 0.327867 AGGGAGATGGGGAGATGCAA 60.328 55.000 0.00 0.00 0.00 4.08 R
4730 5564 1.001406 GTCACTGGTCAAGACTGAGGG 59.999 57.143 0.00 0.00 30.14 4.30 R
5720 6622 0.865769 ACATTTGTCGAAGTCACGGC 59.134 50.000 0.00 0.00 38.42 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.797211 CGATGGGGTCGCTCTACTCC 61.797 65.000 0.00 0.00 44.33 3.85
71 72 2.950309 TCGCTCTACTCCCACTAATCAC 59.050 50.000 0.00 0.00 0.00 3.06
74 75 3.181474 GCTCTACTCCCACTAATCACCAC 60.181 52.174 0.00 0.00 0.00 4.16
79 80 4.335416 ACTCCCACTAATCACCACAAATG 58.665 43.478 0.00 0.00 0.00 2.32
80 81 4.202567 ACTCCCACTAATCACCACAAATGT 60.203 41.667 0.00 0.00 0.00 2.71
81 82 4.078537 TCCCACTAATCACCACAAATGTG 58.921 43.478 6.57 6.57 45.23 3.21
82 83 3.367292 CCCACTAATCACCACAAATGTGC 60.367 47.826 8.03 0.00 44.34 4.57
83 84 3.255395 CCACTAATCACCACAAATGTGCA 59.745 43.478 8.03 0.00 44.34 4.57
84 85 4.478699 CACTAATCACCACAAATGTGCAG 58.521 43.478 8.03 3.04 44.34 4.41
85 86 4.216042 CACTAATCACCACAAATGTGCAGA 59.784 41.667 8.03 8.06 44.34 4.26
86 87 5.012239 ACTAATCACCACAAATGTGCAGAT 58.988 37.500 8.03 9.81 44.34 2.90
168 197 3.927142 AGCGCTCGCCTAAATGTAATATC 59.073 43.478 2.64 0.00 43.17 1.63
351 461 1.068588 ACAGTCACATGCACGTACACT 59.931 47.619 0.00 0.00 0.00 3.55
359 487 2.642139 TGCACGTACACTACTAAGCC 57.358 50.000 0.00 0.00 0.00 4.35
408 536 3.502595 TCCGAACAGTGTCAAACAACAAA 59.497 39.130 0.00 0.00 0.00 2.83
491 1013 9.461312 ACATTGTCAACACATAGGTAATAATGT 57.539 29.630 0.00 0.00 36.78 2.71
603 1125 3.529533 TGGCAAAACAAACCATCAACAG 58.470 40.909 0.00 0.00 0.00 3.16
665 1187 3.442625 CGTACAGGTTCCAGATAGACACA 59.557 47.826 0.00 0.00 0.00 3.72
675 1197 6.275494 TCCAGATAGACACATTCAAACGTA 57.725 37.500 0.00 0.00 0.00 3.57
745 1267 1.207488 TGATGCCTAGCCCACCAACT 61.207 55.000 0.00 0.00 0.00 3.16
779 1301 0.666577 AGCTCAACCACGTACTTCGC 60.667 55.000 0.00 0.00 44.19 4.70
809 1331 6.315144 CACAGACATGTATCCGTCCAATTAAA 59.685 38.462 0.00 0.00 37.65 1.52
865 1387 9.509855 CGCTATATTAAGTGCTAATCTTAGAGG 57.490 37.037 1.13 0.00 32.28 3.69
870 1392 7.719871 TTAAGTGCTAATCTTAGAGGACAGT 57.280 36.000 1.13 0.00 36.55 3.55
872 1394 6.215495 AGTGCTAATCTTAGAGGACAGTTC 57.785 41.667 1.13 0.00 36.55 3.01
931 1453 3.066064 CCAAAAATCCGCGTCCATTATGA 59.934 43.478 4.92 0.00 0.00 2.15
941 1463 4.211164 CGCGTCCATTATGAAATGCTCTTA 59.789 41.667 0.00 0.00 41.06 2.10
942 1464 5.106948 CGCGTCCATTATGAAATGCTCTTAT 60.107 40.000 0.00 0.00 41.06 1.73
944 1466 7.141363 GCGTCCATTATGAAATGCTCTTATTT 58.859 34.615 0.00 0.00 41.06 1.40
945 1467 7.649306 GCGTCCATTATGAAATGCTCTTATTTT 59.351 33.333 0.00 0.00 41.06 1.82
946 1468 9.520204 CGTCCATTATGAAATGCTCTTATTTTT 57.480 29.630 0.00 0.00 41.06 1.94
981 1503 8.974060 TCCTACAATTTTGACTTTGTACTCTT 57.026 30.769 0.00 0.00 37.29 2.85
995 1517 8.510505 ACTTTGTACTCTTACTACGTTTCCTAG 58.489 37.037 0.00 0.00 0.00 3.02
999 1521 4.398673 ACTCTTACTACGTTTCCTAGCCAG 59.601 45.833 0.00 0.00 0.00 4.85
1009 1531 0.175760 TCCTAGCCAGCAAAGCGTAG 59.824 55.000 0.00 0.00 34.64 3.51
1042 1585 2.746277 GGGGCGCAAAGTCATCGT 60.746 61.111 10.83 0.00 0.00 3.73
1043 1586 2.750888 GGGGCGCAAAGTCATCGTC 61.751 63.158 10.83 0.00 0.00 4.20
1044 1587 1.741770 GGGCGCAAAGTCATCGTCT 60.742 57.895 10.83 0.00 0.00 4.18
1045 1588 1.421485 GGCGCAAAGTCATCGTCTG 59.579 57.895 10.83 0.00 0.00 3.51
1046 1589 1.014044 GGCGCAAAGTCATCGTCTGA 61.014 55.000 10.83 0.00 0.00 3.27
1047 1590 0.368227 GCGCAAAGTCATCGTCTGAG 59.632 55.000 0.30 0.00 33.51 3.35
1065 1608 2.112297 GGTGGACCCGTGAAAGCA 59.888 61.111 0.00 0.00 0.00 3.91
1066 1609 1.303317 GGTGGACCCGTGAAAGCAT 60.303 57.895 0.00 0.00 0.00 3.79
1067 1610 1.305930 GGTGGACCCGTGAAAGCATC 61.306 60.000 0.00 0.00 0.00 3.91
1068 1611 1.375396 TGGACCCGTGAAAGCATCG 60.375 57.895 0.00 0.00 0.00 3.84
1069 1612 1.079405 GGACCCGTGAAAGCATCGA 60.079 57.895 0.00 0.00 0.00 3.59
1326 1869 4.966005 CTCGTCAAGGAGCACGAA 57.034 55.556 0.00 0.00 44.08 3.85
1337 1880 4.821589 GCACGAAGCCTCCTCCGG 62.822 72.222 0.00 0.00 37.23 5.14
1380 1923 1.305046 CCACGTCTCAGGTACCCCT 60.305 63.158 8.74 0.00 44.02 4.79
1518 2062 3.991773 GTGGTTTAGTGTGCAGAATCGTA 59.008 43.478 0.00 0.00 0.00 3.43
1522 2066 5.523916 GGTTTAGTGTGCAGAATCGTATGAT 59.476 40.000 0.00 0.00 35.98 2.45
1558 2102 1.005630 CGCCCCTGCTACTAGATGC 60.006 63.158 0.00 0.30 34.43 3.91
1584 2128 4.892934 TCATGAGCAGGGTTTAAGTTTTGT 59.107 37.500 0.00 0.00 0.00 2.83
1585 2129 6.016610 GTCATGAGCAGGGTTTAAGTTTTGTA 60.017 38.462 0.00 0.00 0.00 2.41
1632 2177 3.239587 AGTTTTTGTTTCCGTTGGTGG 57.760 42.857 0.00 0.00 0.00 4.61
1800 2345 2.046292 CCTTGTTCAACCACCCCAATT 58.954 47.619 0.00 0.00 0.00 2.32
1867 2609 0.257328 TGGTTTGCACCTGTCTTCCA 59.743 50.000 0.00 0.00 44.61 3.53
1908 2650 4.877823 TGCAATAGAGCCTTGAAGTATGTG 59.122 41.667 0.00 0.00 0.00 3.21
1910 2652 4.760530 ATAGAGCCTTGAAGTATGTGCA 57.239 40.909 0.00 0.00 0.00 4.57
1911 2653 3.423539 AGAGCCTTGAAGTATGTGCAA 57.576 42.857 0.00 0.00 0.00 4.08
1912 2654 3.341823 AGAGCCTTGAAGTATGTGCAAG 58.658 45.455 0.00 0.00 38.90 4.01
1913 2655 3.008375 AGAGCCTTGAAGTATGTGCAAGA 59.992 43.478 0.00 0.00 41.03 3.02
1914 2656 3.944015 GAGCCTTGAAGTATGTGCAAGAT 59.056 43.478 0.00 0.00 41.03 2.40
1915 2657 4.338879 AGCCTTGAAGTATGTGCAAGATT 58.661 39.130 0.00 0.00 41.03 2.40
1916 2658 4.768968 AGCCTTGAAGTATGTGCAAGATTT 59.231 37.500 0.00 0.00 41.03 2.17
1917 2659 5.945784 AGCCTTGAAGTATGTGCAAGATTTA 59.054 36.000 0.00 0.00 41.03 1.40
1918 2660 6.434028 AGCCTTGAAGTATGTGCAAGATTTAA 59.566 34.615 0.00 0.00 41.03 1.52
1919 2661 6.749118 GCCTTGAAGTATGTGCAAGATTTAAG 59.251 38.462 0.00 0.00 41.03 1.85
1920 2662 7.362056 GCCTTGAAGTATGTGCAAGATTTAAGA 60.362 37.037 0.00 0.00 41.03 2.10
1921 2663 8.514594 CCTTGAAGTATGTGCAAGATTTAAGAA 58.485 33.333 0.00 0.00 41.03 2.52
1957 2699 6.901081 ACTAGGCAAGTTAATTGAGCTTTT 57.099 33.333 0.00 0.00 41.83 2.27
1962 2704 5.863935 GGCAAGTTAATTGAGCTTTTGGTAG 59.136 40.000 0.00 0.00 41.83 3.18
2278 3030 5.873164 TCTAGGAAAGAGTTTTATTCGGTGC 59.127 40.000 0.00 0.00 0.00 5.01
2310 3062 3.270877 GCGAATATTCCAACAGGTCAGT 58.729 45.455 9.87 0.00 0.00 3.41
2333 3085 2.149973 TTTACTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
2334 3086 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2335 3087 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
2336 3088 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2337 3089 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2338 3090 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2339 3091 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2340 3092 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2341 3093 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2342 3094 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2343 3095 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2344 3096 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2345 3097 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2346 3098 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
2347 3099 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
2348 3100 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
2349 3101 6.014499 CCTCCGTCCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
2350 3102 7.369551 TCCGTCCCATAATATAAGAGTGTTT 57.630 36.000 0.00 0.00 0.00 2.83
2351 3103 7.798071 TCCGTCCCATAATATAAGAGTGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
2352 3104 8.269317 TCCGTCCCATAATATAAGAGTGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
2353 3105 8.342634 CCGTCCCATAATATAAGAGTGTTTTTG 58.657 37.037 0.00 0.00 0.00 2.44
2354 3106 9.104965 CGTCCCATAATATAAGAGTGTTTTTGA 57.895 33.333 0.00 0.00 0.00 2.69
2356 3108 9.967451 TCCCATAATATAAGAGTGTTTTTGACA 57.033 29.630 0.00 0.00 35.42 3.58
2379 3131 7.644917 CACTTGTAGTGTCAAAAACGTTAAG 57.355 36.000 0.00 0.00 41.19 1.85
2380 3132 7.238571 CACTTGTAGTGTCAAAAACGTTAAGT 58.761 34.615 0.00 0.00 41.19 2.24
2381 3133 7.215568 CACTTGTAGTGTCAAAAACGTTAAGTG 59.784 37.037 14.23 14.23 41.19 3.16
2382 3134 6.724694 TGTAGTGTCAAAAACGTTAAGTGT 57.275 33.333 0.00 0.00 0.00 3.55
2383 3135 6.764094 TGTAGTGTCAAAAACGTTAAGTGTC 58.236 36.000 0.00 0.00 0.00 3.67
2384 3136 5.866335 AGTGTCAAAAACGTTAAGTGTCA 57.134 34.783 0.00 1.58 0.00 3.58
2385 3137 6.243811 AGTGTCAAAAACGTTAAGTGTCAA 57.756 33.333 0.00 0.00 0.00 3.18
2386 3138 6.670233 AGTGTCAAAAACGTTAAGTGTCAAA 58.330 32.000 0.00 0.00 0.00 2.69
2387 3139 6.579666 AGTGTCAAAAACGTTAAGTGTCAAAC 59.420 34.615 0.00 0.00 0.00 2.93
2388 3140 6.360148 GTGTCAAAAACGTTAAGTGTCAAACA 59.640 34.615 0.00 0.00 0.00 2.83
2404 3156 7.873719 TGTCAAACACACCCTTATATTATGG 57.126 36.000 0.00 0.00 0.00 2.74
2405 3157 6.831353 TGTCAAACACACCCTTATATTATGGG 59.169 38.462 0.00 0.00 45.99 4.00
2406 3158 7.057894 GTCAAACACACCCTTATATTATGGGA 58.942 38.462 11.36 0.00 43.93 4.37
2407 3159 7.012989 GTCAAACACACCCTTATATTATGGGAC 59.987 40.741 11.36 0.00 43.93 4.46
2408 3160 5.223449 ACACACCCTTATATTATGGGACG 57.777 43.478 11.36 5.68 43.93 4.79
2409 3161 4.041198 ACACACCCTTATATTATGGGACGG 59.959 45.833 11.36 4.60 43.93 4.79
2410 3162 4.285003 CACACCCTTATATTATGGGACGGA 59.715 45.833 11.36 0.00 43.93 4.69
2411 3163 4.530946 ACACCCTTATATTATGGGACGGAG 59.469 45.833 11.36 1.19 43.93 4.63
2412 3164 4.081087 CACCCTTATATTATGGGACGGAGG 60.081 50.000 11.36 0.00 43.93 4.30
2413 3165 4.202858 ACCCTTATATTATGGGACGGAGGA 60.203 45.833 11.36 0.00 43.93 3.71
2414 3166 4.781087 CCCTTATATTATGGGACGGAGGAA 59.219 45.833 0.00 0.00 43.93 3.36
2415 3167 5.104900 CCCTTATATTATGGGACGGAGGAAG 60.105 48.000 0.00 0.00 43.93 3.46
2416 3168 5.484290 CCTTATATTATGGGACGGAGGAAGT 59.516 44.000 0.00 0.00 0.00 3.01
2417 3169 6.666546 CCTTATATTATGGGACGGAGGAAGTA 59.333 42.308 0.00 0.00 0.00 2.24
2495 3282 5.666969 TCTTGATTTTGTCGTTGTAGTGG 57.333 39.130 0.00 0.00 0.00 4.00
2561 3348 9.507280 AATTTATTGTCATGCTATTCTTCAACG 57.493 29.630 0.00 0.00 0.00 4.10
2809 3605 6.184789 AGCAGAAACTCTAGAGTAGCTACTT 58.815 40.000 26.71 17.98 41.58 2.24
3023 3825 1.380302 GGCTGGGCAGGAGAAAAGA 59.620 57.895 0.00 0.00 0.00 2.52
3450 4254 0.460284 ATCGGTGCATTCGAGGTCAC 60.460 55.000 17.51 4.94 40.09 3.67
3451 4255 1.374125 CGGTGCATTCGAGGTCACA 60.374 57.895 6.57 0.00 0.00 3.58
3456 4260 3.064207 GTGCATTCGAGGTCACAACTTA 58.936 45.455 0.00 0.00 0.00 2.24
3457 4261 3.684788 GTGCATTCGAGGTCACAACTTAT 59.315 43.478 0.00 0.00 0.00 1.73
3458 4262 3.684305 TGCATTCGAGGTCACAACTTATG 59.316 43.478 0.00 0.00 0.00 1.90
3459 4263 3.485877 GCATTCGAGGTCACAACTTATGC 60.486 47.826 0.00 0.00 0.00 3.14
3460 4264 1.990799 TCGAGGTCACAACTTATGCG 58.009 50.000 0.00 0.00 0.00 4.73
3461 4265 0.370273 CGAGGTCACAACTTATGCGC 59.630 55.000 0.00 0.00 0.00 6.09
3462 4266 0.727398 GAGGTCACAACTTATGCGCC 59.273 55.000 4.18 0.00 0.00 6.53
3469 4273 0.109781 CAACTTATGCGCCGCTGTTT 60.110 50.000 11.67 0.00 0.00 2.83
3531 4351 9.578576 AACATTGACTTACATATATTGCATCCT 57.421 29.630 0.00 0.00 0.00 3.24
3532 4352 9.224267 ACATTGACTTACATATATTGCATCCTC 57.776 33.333 0.00 0.00 0.00 3.71
3533 4353 9.445878 CATTGACTTACATATATTGCATCCTCT 57.554 33.333 0.00 0.00 0.00 3.69
3534 4354 8.837788 TTGACTTACATATATTGCATCCTCTG 57.162 34.615 0.00 0.00 0.00 3.35
3628 4449 9.528489 TTTAATTCTTGCTAACTTGGGAATAGT 57.472 29.630 0.00 0.00 0.00 2.12
3672 4493 8.110743 AGATATCATCATATTATGCCCCTGTT 57.889 34.615 5.32 0.00 0.00 3.16
3704 4525 9.582431 TTATTCTCTGTTTACTAGTCATTTCGG 57.418 33.333 0.00 0.00 0.00 4.30
3708 4529 6.751157 TCTGTTTACTAGTCATTTCGGTTGA 58.249 36.000 0.00 0.00 0.00 3.18
3716 4537 3.809832 AGTCATTTCGGTTGAACACTCAG 59.190 43.478 0.00 0.00 32.71 3.35
3723 4544 2.683968 GGTTGAACACTCAGCGTATCA 58.316 47.619 0.00 0.00 33.79 2.15
3794 4616 7.511809 AAAAAGTATAACTAGCCGTTACGTC 57.488 36.000 3.52 0.00 40.67 4.34
3795 4617 6.442513 AAAGTATAACTAGCCGTTACGTCT 57.557 37.500 3.52 0.00 40.67 4.18
3796 4618 6.442513 AAGTATAACTAGCCGTTACGTCTT 57.557 37.500 3.52 2.71 40.67 3.01
3797 4619 6.442513 AGTATAACTAGCCGTTACGTCTTT 57.557 37.500 3.52 0.00 40.67 2.52
3798 4620 6.261118 AGTATAACTAGCCGTTACGTCTTTG 58.739 40.000 3.52 0.00 40.67 2.77
3939 4769 0.108207 TTGTAACCCGCCGAAAAGGA 59.892 50.000 0.00 0.00 45.00 3.36
4080 4910 8.045507 TCATGAAAGACAGCTCTTCTTGATAAT 58.954 33.333 7.70 0.00 35.52 1.28
4161 4992 9.574516 ACAGTACTTTTATTCACTTTCCAGATT 57.425 29.630 0.00 0.00 0.00 2.40
4217 5048 9.615295 GTTTCTAGTGTTGTTTTTAGTTTCACA 57.385 29.630 0.00 0.00 0.00 3.58
4301 5135 6.566753 GCCGAAGCAAAATCATCTAGATAACC 60.567 42.308 4.54 0.00 39.53 2.85
4328 5162 6.106673 TCCTTACTTTTGAGTAGTATGCAGC 58.893 40.000 0.00 0.00 0.00 5.25
4350 5184 9.974750 GCAGCTATTACTTAGAAAAAGTTAGTG 57.025 33.333 0.00 0.00 0.00 2.74
4525 5359 2.683968 CTAGGTTGCACTCTTTACGCA 58.316 47.619 0.00 0.00 0.00 5.24
4610 5444 6.595326 TCATCTCCTGTTGATTTATGTGTCAC 59.405 38.462 0.00 0.00 0.00 3.67
4663 5497 1.471684 GCTCCAAATCTCCAACTGCTG 59.528 52.381 0.00 0.00 0.00 4.41
4669 5503 0.689055 ATCTCCAACTGCTGCAGTGA 59.311 50.000 33.53 25.46 44.62 3.41
4684 5518 5.221185 GCTGCAGTGAATAATCCATTGACAT 60.221 40.000 16.64 0.00 33.57 3.06
4771 5616 7.719633 AGTGACAGTGGAATTTAGTACAACAAT 59.280 33.333 0.00 0.00 0.00 2.71
4776 5628 7.807907 CAGTGGAATTTAGTACAACAATTGGTC 59.192 37.037 10.83 0.00 34.12 4.02
4851 5703 2.584835 TGCCTTGTGCTTTAGATGGT 57.415 45.000 0.00 0.00 42.00 3.55
4870 5722 6.595716 AGATGGTGTACTGCTTAAAGATCAAC 59.404 38.462 0.00 0.00 0.00 3.18
4876 5728 7.119846 GTGTACTGCTTAAAGATCAACCTCAAT 59.880 37.037 0.00 0.00 0.00 2.57
4885 5737 7.454260 AAAGATCAACCTCAATTTGGTAGAC 57.546 36.000 0.00 0.00 36.69 2.59
4886 5738 6.380079 AGATCAACCTCAATTTGGTAGACT 57.620 37.500 0.00 0.00 36.69 3.24
4942 5794 4.620723 AGGTACAATCATACTGGGTCTCA 58.379 43.478 0.00 0.00 0.00 3.27
4952 5804 1.344763 ACTGGGTCTCAGAAAAGTCGG 59.655 52.381 6.75 0.00 46.18 4.79
4966 5818 0.762418 AGTCGGGAATGTGGTCAACA 59.238 50.000 0.00 0.00 44.79 3.33
4991 5843 0.619543 ACTGGGGCGGTAACCTGTAT 60.620 55.000 0.00 0.00 37.19 2.29
5107 5959 1.009675 GCTGGCCATTATGAACGCG 60.010 57.895 5.51 3.53 0.00 6.01
5124 5976 1.893808 CGCAGTTGAAGTGGCCAGT 60.894 57.895 5.11 6.41 0.00 4.00
5213 6068 2.009108 CGCCCTCACATCAATGACG 58.991 57.895 0.00 0.00 0.00 4.35
5303 6158 5.634896 TGACTCGTTTCTTCCTTATACGAC 58.365 41.667 0.00 0.00 36.44 4.34
5325 6180 2.890311 TGCAAAAGGGGACATGTTGTAG 59.110 45.455 0.00 0.00 0.00 2.74
5512 6368 2.509166 TCGCCTTCTACTTCTCCAGA 57.491 50.000 0.00 0.00 0.00 3.86
5550 6406 7.775397 TGTTTAAGTACACAAGGAACAGTAC 57.225 36.000 0.00 0.00 37.65 2.73
5616 6478 6.251655 AGTTCTAAGAGCTTGCAAAGATTG 57.748 37.500 0.00 0.00 41.66 2.67
5683 6551 7.766278 ACATCGATACTCTGAAAATGCTACTTT 59.234 33.333 0.00 0.00 0.00 2.66
5711 6579 3.057033 GCATTTTGGAGCACTGATTCTGT 60.057 43.478 0.00 0.00 0.00 3.41
5734 6636 1.370609 TTTTTGCCGTGACTTCGACA 58.629 45.000 0.00 0.00 0.00 4.35
5735 6637 1.370609 TTTTGCCGTGACTTCGACAA 58.629 45.000 0.00 0.00 32.15 3.18
5736 6638 1.370609 TTTGCCGTGACTTCGACAAA 58.629 45.000 0.00 0.00 39.81 2.83
5737 6639 1.588674 TTGCCGTGACTTCGACAAAT 58.411 45.000 0.00 0.00 31.21 2.32
5738 6640 0.865111 TGCCGTGACTTCGACAAATG 59.135 50.000 0.00 0.00 0.00 2.32
5739 6641 0.865769 GCCGTGACTTCGACAAATGT 59.134 50.000 0.00 0.00 0.00 2.71
5740 6642 1.398451 GCCGTGACTTCGACAAATGTG 60.398 52.381 0.00 0.00 0.00 3.21
5741 6643 2.131972 CCGTGACTTCGACAAATGTGA 58.868 47.619 0.00 0.00 0.00 3.58
5742 6644 2.736721 CCGTGACTTCGACAAATGTGAT 59.263 45.455 0.00 0.00 0.00 3.06
5743 6645 3.186409 CCGTGACTTCGACAAATGTGATT 59.814 43.478 0.00 0.00 0.00 2.57
5744 6646 4.319477 CCGTGACTTCGACAAATGTGATTT 60.319 41.667 0.00 0.00 0.00 2.17
5745 6647 4.840772 CGTGACTTCGACAAATGTGATTTC 59.159 41.667 0.00 0.00 0.00 2.17
5746 6648 5.558083 CGTGACTTCGACAAATGTGATTTCA 60.558 40.000 0.00 0.00 0.00 2.69
5747 6649 6.373779 GTGACTTCGACAAATGTGATTTCAT 58.626 36.000 0.00 0.00 0.00 2.57
5748 6650 6.303970 GTGACTTCGACAAATGTGATTTCATG 59.696 38.462 0.00 0.00 0.00 3.07
5749 6651 6.204495 TGACTTCGACAAATGTGATTTCATGA 59.796 34.615 0.00 0.00 0.00 3.07
5750 6652 7.094677 TGACTTCGACAAATGTGATTTCATGAT 60.095 33.333 0.00 0.00 0.00 2.45
5751 6653 7.025365 ACTTCGACAAATGTGATTTCATGATG 58.975 34.615 0.00 0.00 0.00 3.07
5752 6654 6.740411 TCGACAAATGTGATTTCATGATGA 57.260 33.333 0.00 0.00 0.00 2.92
5753 6655 7.143514 TCGACAAATGTGATTTCATGATGAA 57.856 32.000 3.29 3.29 34.03 2.57
5893 6799 7.280428 GGTTACTTTCCCTAACTAAGAGCATTC 59.720 40.741 0.00 0.00 0.00 2.67
5930 6836 4.701956 AATTTTCAATACAGGCTCGTGG 57.298 40.909 0.00 0.00 0.00 4.94
5943 6849 3.083293 GGCTCGTGGGGTACAAAAATAA 58.917 45.455 0.00 0.00 0.00 1.40
5960 7053 7.713073 ACAAAAATAACCCGTTCAATTGACATT 59.287 29.630 7.89 1.30 0.00 2.71
5963 7056 1.959985 ACCCGTTCAATTGACATTGCA 59.040 42.857 7.89 0.00 39.90 4.08
5965 7058 2.988493 CCCGTTCAATTGACATTGCAAG 59.012 45.455 7.89 0.00 39.90 4.01
5971 7064 1.636148 ATTGACATTGCAAGCCAGGT 58.364 45.000 4.94 0.00 0.00 4.00
6004 7097 5.771469 CATGAACCTTAAAGCACATCACAA 58.229 37.500 0.00 0.00 0.00 3.33
6010 7103 4.549458 CTTAAAGCACATCACAACCAAGG 58.451 43.478 0.00 0.00 0.00 3.61
6028 7121 3.261981 AGGTCGCTATGAATCGGTTTT 57.738 42.857 0.00 0.00 0.00 2.43
6048 7142 0.597568 CGTGATGCAAAAGAGCCCAA 59.402 50.000 0.00 0.00 0.00 4.12
6074 7168 2.467826 GCTCCAGCGATGCAACCTC 61.468 63.158 0.00 0.00 0.00 3.85
6106 7200 1.817520 CGTGGTGTGAGGTTGCACA 60.818 57.895 0.00 0.00 45.80 4.57
6116 7210 0.892063 AGGTTGCACACGGTTTGTTT 59.108 45.000 0.00 0.00 35.67 2.83
6134 7228 8.847196 GGTTTGTTTGTTTAACTCCTAATCTCT 58.153 33.333 0.00 0.00 37.64 3.10
6138 7232 9.847224 TGTTTGTTTAACTCCTAATCTCTTTCT 57.153 29.630 0.00 0.00 37.64 2.52
6233 7364 8.087750 TCAGTTCATTGTAAATGTTCAATTCCC 58.912 33.333 0.26 0.00 32.85 3.97
6235 7366 8.306761 AGTTCATTGTAAATGTTCAATTCCCTC 58.693 33.333 0.26 0.00 32.85 4.30
6268 7400 5.934043 GGAGCTATTTTGGACAAATTTTGCT 59.066 36.000 9.04 12.94 31.65 3.91
6288 7420 0.931702 AAATTTGTCACGCACGTCGA 59.068 45.000 13.06 0.00 41.67 4.20
6290 7422 1.554042 ATTTGTCACGCACGTCGACC 61.554 55.000 10.58 0.00 41.67 4.79
6328 7460 4.574892 TGACCAATAGTTTCATCTCGCAA 58.425 39.130 0.00 0.00 0.00 4.85
6331 7463 6.124088 ACCAATAGTTTCATCTCGCAATTC 57.876 37.500 0.00 0.00 0.00 2.17
6340 7472 2.163818 TCTCGCAATTCCAAACGACT 57.836 45.000 0.00 0.00 0.00 4.18
6341 7473 2.489971 TCTCGCAATTCCAAACGACTT 58.510 42.857 0.00 0.00 0.00 3.01
6342 7474 2.875933 TCTCGCAATTCCAAACGACTTT 59.124 40.909 0.00 0.00 0.00 2.66
6343 7475 3.059188 TCTCGCAATTCCAAACGACTTTC 60.059 43.478 0.00 0.00 0.00 2.62
6344 7476 1.969256 CGCAATTCCAAACGACTTTCG 59.031 47.619 0.00 0.00 46.93 3.46
6375 7514 7.233689 CACGTTTTCTGTTTCGATGATCATAA 58.766 34.615 8.54 0.00 0.00 1.90
6377 7516 8.450964 ACGTTTTCTGTTTCGATGATCATAAAT 58.549 29.630 8.54 0.00 0.00 1.40
6414 7553 3.220110 TCCCTCGTGGACTGTACATATC 58.780 50.000 4.76 0.00 38.61 1.63
6416 7555 3.253677 CCCTCGTGGACTGTACATATCTC 59.746 52.174 4.76 0.00 35.39 2.75
6484 7632 1.002792 CCTCTTGGCCTCCTCTCCT 59.997 63.158 3.32 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.255395 TGCACATTTGTGGTGATTAGTGG 59.745 43.478 12.32 0.00 45.72 4.00
71 72 6.446781 AGAAGATAATCTGCACATTTGTGG 57.553 37.500 12.32 0.00 45.72 4.17
74 75 6.994496 TCCCTAGAAGATAATCTGCACATTTG 59.006 38.462 0.00 0.00 0.00 2.32
79 80 6.349300 TGTTTCCCTAGAAGATAATCTGCAC 58.651 40.000 0.00 0.00 32.35 4.57
80 81 6.560003 TGTTTCCCTAGAAGATAATCTGCA 57.440 37.500 0.00 0.00 32.35 4.41
81 82 9.732130 ATTATGTTTCCCTAGAAGATAATCTGC 57.268 33.333 0.00 0.00 30.45 4.26
135 164 1.068194 GGCGAGCGCTAGACAGAATAT 60.068 52.381 22.43 0.00 41.60 1.28
145 174 2.875087 TTACATTTAGGCGAGCGCTA 57.125 45.000 11.50 0.00 41.60 4.26
196 225 6.564125 GCATAAACAGTAACTCACACTGACAC 60.564 42.308 9.33 0.00 45.10 3.67
326 436 1.220529 CGTGCATGTGACTGTTGTCT 58.779 50.000 0.00 0.00 43.29 3.41
351 461 3.016031 TCGTATGTTCACCGGCTTAGTA 58.984 45.455 0.00 0.00 0.00 1.82
359 487 2.852413 CACTAGCTTCGTATGTTCACCG 59.148 50.000 0.00 0.00 0.00 4.94
408 536 3.450578 CATGCACTTGCTCAACTGTTTT 58.549 40.909 2.33 0.00 42.66 2.43
499 1021 7.530426 TCATCTGAGCCATGCGTATATATAT 57.470 36.000 0.00 0.00 0.00 0.86
500 1022 6.959639 TCATCTGAGCCATGCGTATATATA 57.040 37.500 0.00 0.00 0.00 0.86
501 1023 5.859205 TCATCTGAGCCATGCGTATATAT 57.141 39.130 0.00 0.00 0.00 0.86
502 1024 5.659440 TTCATCTGAGCCATGCGTATATA 57.341 39.130 0.00 0.00 0.00 0.86
603 1125 1.270550 CAAGTGTGGGCCTGTCATTTC 59.729 52.381 4.53 0.00 0.00 2.17
745 1267 5.126067 GGTTGAGCTAGGCATCTTAAATGA 58.874 41.667 0.00 0.00 0.00 2.57
779 1301 4.219802 GACGGATACATGTCTGTGATACG 58.780 47.826 0.00 4.97 37.82 3.06
870 1392 2.540515 GATGAAATCCGAGCAGTCGAA 58.459 47.619 0.00 0.00 46.44 3.71
944 1466 9.157104 GTCAAAATTGTAGGAAAAGGAAACAAA 57.843 29.630 0.00 0.00 34.08 2.83
945 1467 8.536175 AGTCAAAATTGTAGGAAAAGGAAACAA 58.464 29.630 0.00 0.00 34.81 2.83
946 1468 8.073467 AGTCAAAATTGTAGGAAAAGGAAACA 57.927 30.769 0.00 0.00 0.00 2.83
947 1469 8.942338 AAGTCAAAATTGTAGGAAAAGGAAAC 57.058 30.769 0.00 0.00 0.00 2.78
981 1503 2.449464 TGCTGGCTAGGAAACGTAGTA 58.551 47.619 0.00 0.00 45.00 1.82
995 1517 1.227999 TGTGTCTACGCTTTGCTGGC 61.228 55.000 0.00 0.00 0.00 4.85
999 1521 2.223157 TGTTGTTGTGTCTACGCTTTGC 60.223 45.455 0.00 0.00 0.00 3.68
1009 1531 1.164041 CCCCTCCGTGTTGTTGTGTC 61.164 60.000 0.00 0.00 0.00 3.67
1063 1606 4.142988 TGTTTAGTTGGTTCGATTCGATGC 60.143 41.667 9.96 6.14 35.23 3.91
1065 1608 5.390567 GCTTGTTTAGTTGGTTCGATTCGAT 60.391 40.000 9.96 0.00 35.23 3.59
1066 1609 4.084223 GCTTGTTTAGTTGGTTCGATTCGA 60.084 41.667 4.29 4.29 0.00 3.71
1067 1610 4.148891 GCTTGTTTAGTTGGTTCGATTCG 58.851 43.478 0.00 0.00 0.00 3.34
1068 1611 4.909880 GTGCTTGTTTAGTTGGTTCGATTC 59.090 41.667 0.00 0.00 0.00 2.52
1069 1612 4.336993 TGTGCTTGTTTAGTTGGTTCGATT 59.663 37.500 0.00 0.00 0.00 3.34
1380 1923 2.920912 GTGGGGCGGGATCGGATA 60.921 66.667 0.00 0.00 36.79 2.59
1558 2102 3.679389 ACTTAAACCCTGCTCATGACAG 58.321 45.455 14.68 14.68 34.82 3.51
1632 2177 6.179906 TCTCATAGAATTCCCAGATTCACC 57.820 41.667 0.65 0.00 38.27 4.02
1888 2630 5.102953 TGCACATACTTCAAGGCTCTATT 57.897 39.130 0.00 0.00 0.00 1.73
1895 2637 8.044060 TCTTAAATCTTGCACATACTTCAAGG 57.956 34.615 0.00 0.00 38.13 3.61
1914 2656 9.691362 GCCTAGTTTCAACATGATTTTCTTAAA 57.309 29.630 0.00 0.00 0.00 1.52
1915 2657 8.855110 TGCCTAGTTTCAACATGATTTTCTTAA 58.145 29.630 0.00 0.00 0.00 1.85
1916 2658 8.402798 TGCCTAGTTTCAACATGATTTTCTTA 57.597 30.769 0.00 0.00 0.00 2.10
1917 2659 7.288810 TGCCTAGTTTCAACATGATTTTCTT 57.711 32.000 0.00 0.00 0.00 2.52
1918 2660 6.899393 TGCCTAGTTTCAACATGATTTTCT 57.101 33.333 0.00 0.00 0.00 2.52
1919 2661 7.147976 ACTTGCCTAGTTTCAACATGATTTTC 58.852 34.615 0.00 0.00 31.29 2.29
1920 2662 7.054491 ACTTGCCTAGTTTCAACATGATTTT 57.946 32.000 0.00 0.00 31.29 1.82
1921 2663 6.655078 ACTTGCCTAGTTTCAACATGATTT 57.345 33.333 0.00 0.00 31.29 2.17
1934 2676 6.294731 CCAAAAGCTCAATTAACTTGCCTAGT 60.295 38.462 0.00 0.00 39.32 2.57
1978 2720 6.463995 AACAAAAATGCCTTAGACTGTCAA 57.536 33.333 10.88 1.96 0.00 3.18
1988 2730 6.815089 TGTACTCATCAAACAAAAATGCCTT 58.185 32.000 0.00 0.00 0.00 4.35
2064 2809 5.823861 TGCCTATAAGATGTTATGGCAGA 57.176 39.130 22.98 10.74 42.11 4.26
2278 3030 7.351981 TGTTGGAATATTCGCAAAATATCGAG 58.648 34.615 16.22 0.00 36.02 4.04
2284 3036 5.184864 TGACCTGTTGGAATATTCGCAAAAT 59.815 36.000 16.22 3.28 37.04 1.82
2320 3072 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2321 3073 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2322 3074 5.222484 ACTCTTATATTATGGGACGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
2323 3075 5.024118 ACTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
2324 3076 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
2325 3077 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
2326 3078 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
2327 3079 8.342634 CAAAAACACTCTTATATTATGGGACGG 58.657 37.037 0.00 0.00 0.00 4.79
2328 3080 9.104965 TCAAAAACACTCTTATATTATGGGACG 57.895 33.333 0.00 0.00 0.00 4.79
2330 3082 9.967451 TGTCAAAAACACTCTTATATTATGGGA 57.033 29.630 0.00 0.00 31.20 4.37
2356 3108 7.095102 ACACTTAACGTTTTTGACACTACAAGT 60.095 33.333 5.91 2.30 0.00 3.16
2357 3109 7.238571 ACACTTAACGTTTTTGACACTACAAG 58.761 34.615 5.91 1.61 0.00 3.16
2358 3110 7.095313 TGACACTTAACGTTTTTGACACTACAA 60.095 33.333 5.91 0.00 0.00 2.41
2359 3111 6.368243 TGACACTTAACGTTTTTGACACTACA 59.632 34.615 5.91 0.00 0.00 2.74
2360 3112 6.764094 TGACACTTAACGTTTTTGACACTAC 58.236 36.000 5.91 0.00 0.00 2.73
2361 3113 6.964741 TGACACTTAACGTTTTTGACACTA 57.035 33.333 5.91 0.00 0.00 2.74
2362 3114 5.866335 TGACACTTAACGTTTTTGACACT 57.134 34.783 5.91 0.00 0.00 3.55
2363 3115 6.360148 TGTTTGACACTTAACGTTTTTGACAC 59.640 34.615 5.91 0.00 0.00 3.67
2364 3116 6.360148 GTGTTTGACACTTAACGTTTTTGACA 59.640 34.615 5.91 5.40 45.27 3.58
2365 3117 6.734728 GTGTTTGACACTTAACGTTTTTGAC 58.265 36.000 5.91 2.73 45.27 3.18
2366 3118 6.914760 GTGTTTGACACTTAACGTTTTTGA 57.085 33.333 5.91 0.00 45.27 2.69
2380 3132 6.831353 CCCATAATATAAGGGTGTGTTTGACA 59.169 38.462 0.00 0.00 37.81 3.58
2381 3133 7.012989 GTCCCATAATATAAGGGTGTGTTTGAC 59.987 40.741 6.87 0.00 43.31 3.18
2382 3134 7.057894 GTCCCATAATATAAGGGTGTGTTTGA 58.942 38.462 6.87 0.00 43.31 2.69
2383 3135 6.017440 CGTCCCATAATATAAGGGTGTGTTTG 60.017 42.308 6.87 0.00 43.31 2.93
2384 3136 6.059484 CGTCCCATAATATAAGGGTGTGTTT 58.941 40.000 6.87 0.00 43.31 2.83
2385 3137 5.455612 CCGTCCCATAATATAAGGGTGTGTT 60.456 44.000 6.87 0.00 43.31 3.32
2386 3138 4.041198 CCGTCCCATAATATAAGGGTGTGT 59.959 45.833 6.87 0.00 43.31 3.72
2387 3139 4.285003 TCCGTCCCATAATATAAGGGTGTG 59.715 45.833 6.87 0.46 43.31 3.82
2388 3140 4.495565 TCCGTCCCATAATATAAGGGTGT 58.504 43.478 6.87 0.00 43.31 4.16
2389 3141 4.081087 CCTCCGTCCCATAATATAAGGGTG 60.081 50.000 6.87 2.60 43.31 4.61
2390 3142 4.101856 CCTCCGTCCCATAATATAAGGGT 58.898 47.826 6.87 0.00 43.31 4.34
2391 3143 4.359105 TCCTCCGTCCCATAATATAAGGG 58.641 47.826 0.00 0.00 44.22 3.95
2392 3144 5.484290 ACTTCCTCCGTCCCATAATATAAGG 59.516 44.000 0.00 0.00 0.00 2.69
2393 3145 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
2394 3146 7.472741 TCTACTTCCTCCGTCCCATAATATAA 58.527 38.462 0.00 0.00 0.00 0.98
2395 3147 7.036154 TCTACTTCCTCCGTCCCATAATATA 57.964 40.000 0.00 0.00 0.00 0.86
2396 3148 5.900437 TCTACTTCCTCCGTCCCATAATAT 58.100 41.667 0.00 0.00 0.00 1.28
2397 3149 5.329191 TCTACTTCCTCCGTCCCATAATA 57.671 43.478 0.00 0.00 0.00 0.98
2398 3150 4.194678 TCTACTTCCTCCGTCCCATAAT 57.805 45.455 0.00 0.00 0.00 1.28
2399 3151 3.675348 TCTACTTCCTCCGTCCCATAA 57.325 47.619 0.00 0.00 0.00 1.90
2400 3152 3.675348 TTCTACTTCCTCCGTCCCATA 57.325 47.619 0.00 0.00 0.00 2.74
2401 3153 2.544844 TTCTACTTCCTCCGTCCCAT 57.455 50.000 0.00 0.00 0.00 4.00
2402 3154 2.176889 CTTTCTACTTCCTCCGTCCCA 58.823 52.381 0.00 0.00 0.00 4.37
2403 3155 2.177734 ACTTTCTACTTCCTCCGTCCC 58.822 52.381 0.00 0.00 0.00 4.46
2404 3156 4.015764 ACTACTTTCTACTTCCTCCGTCC 58.984 47.826 0.00 0.00 0.00 4.79
2405 3157 6.940831 ATACTACTTTCTACTTCCTCCGTC 57.059 41.667 0.00 0.00 0.00 4.79
2406 3158 8.814038 TTTATACTACTTTCTACTTCCTCCGT 57.186 34.615 0.00 0.00 0.00 4.69
2407 3159 9.680315 CATTTATACTACTTTCTACTTCCTCCG 57.320 37.037 0.00 0.00 0.00 4.63
2467 3254 8.885722 ACTACAACGACAAAATCAAGAAAGTTA 58.114 29.630 0.00 0.00 0.00 2.24
2524 3311 8.408601 AGCATGACAATAAATTGGTCAATACTC 58.591 33.333 0.00 0.00 41.96 2.59
2561 3348 8.189709 ACAAAAGCTTGTTCTTCAGAAAAATC 57.810 30.769 0.00 0.00 43.45 2.17
2809 3605 5.479306 GACTACTGTGGTCATGAAGCTTTA 58.521 41.667 17.99 0.00 34.23 1.85
3023 3825 5.615289 ACAAGCATGTACACTTCTCTTCTT 58.385 37.500 0.00 0.00 38.24 2.52
3156 3958 3.314331 CCCGAGCTCACACCAGGT 61.314 66.667 15.40 0.00 0.00 4.00
3450 4254 0.109781 AAACAGCGGCGCATAAGTTG 60.110 50.000 35.02 23.67 0.00 3.16
3451 4255 1.444836 TAAACAGCGGCGCATAAGTT 58.555 45.000 35.02 26.45 0.00 2.66
3456 4260 1.597663 GAGTAATAAACAGCGGCGCAT 59.402 47.619 35.02 19.28 0.00 4.73
3457 4261 1.003851 GAGTAATAAACAGCGGCGCA 58.996 50.000 35.02 13.72 0.00 6.09
3458 4262 1.004927 CAGAGTAATAAACAGCGGCGC 60.005 52.381 26.86 26.86 0.00 6.53
3459 4263 1.004927 GCAGAGTAATAAACAGCGGCG 60.005 52.381 0.51 0.51 0.00 6.46
3460 4264 2.006888 TGCAGAGTAATAAACAGCGGC 58.993 47.619 0.00 0.00 0.00 6.53
3461 4265 4.882671 AATGCAGAGTAATAAACAGCGG 57.117 40.909 0.00 0.00 0.00 5.52
3462 4266 8.841444 AAATTAATGCAGAGTAATAAACAGCG 57.159 30.769 0.00 0.00 0.00 5.18
3526 4346 2.975732 TCTGTAGCTTGCAGAGGATG 57.024 50.000 14.30 0.00 37.98 3.51
3536 4356 8.533570 GTCAACTGTGATTATGCTCTGTAGCTT 61.534 40.741 0.00 0.00 41.98 3.74
3537 4357 7.123418 GTCAACTGTGATTATGCTCTGTAGCT 61.123 42.308 0.00 0.00 41.98 3.32
3538 4358 5.006165 GTCAACTGTGATTATGCTCTGTAGC 59.994 44.000 0.00 0.00 41.89 3.58
3539 4359 5.230936 CGTCAACTGTGATTATGCTCTGTAG 59.769 44.000 0.00 0.00 35.80 2.74
3540 4360 5.102313 CGTCAACTGTGATTATGCTCTGTA 58.898 41.667 0.00 0.00 35.80 2.74
3541 4361 3.928992 CGTCAACTGTGATTATGCTCTGT 59.071 43.478 0.00 0.00 35.80 3.41
3542 4362 4.176271 TCGTCAACTGTGATTATGCTCTG 58.824 43.478 0.00 0.00 35.80 3.35
3547 4367 4.330894 AGTGCATCGTCAACTGTGATTATG 59.669 41.667 0.00 0.00 35.80 1.90
3558 4378 8.487313 AGTACAAAAATATAGTGCATCGTCAA 57.513 30.769 0.00 0.00 0.00 3.18
3589 4410 8.034058 AGCAAGAATTAAACTGTAGTCACATC 57.966 34.615 0.00 0.00 33.14 3.06
3607 4428 5.642063 CGAACTATTCCCAAGTTAGCAAGAA 59.358 40.000 0.00 0.00 37.31 2.52
3672 4493 9.772973 TGACTAGTAAACAGAGAATAAAGCAAA 57.227 29.630 0.00 0.00 0.00 3.68
3696 4517 2.548057 GCTGAGTGTTCAACCGAAATGA 59.452 45.455 0.00 0.00 31.43 2.57
3704 4525 4.211374 ACTTTGATACGCTGAGTGTTCAAC 59.789 41.667 17.13 4.73 36.61 3.18
3708 4529 8.542497 TTTAATACTTTGATACGCTGAGTGTT 57.458 30.769 3.14 0.00 0.00 3.32
3770 4592 7.315890 AGACGTAACGGCTAGTTATACTTTTT 58.684 34.615 0.00 0.00 46.54 1.94
3791 4613 1.134280 AGATGGGGAGATGCAAAGACG 60.134 52.381 0.00 0.00 0.00 4.18
3792 4614 2.570135 GAGATGGGGAGATGCAAAGAC 58.430 52.381 0.00 0.00 0.00 3.01
3793 4615 1.492176 GGAGATGGGGAGATGCAAAGA 59.508 52.381 0.00 0.00 0.00 2.52
3794 4616 1.478288 GGGAGATGGGGAGATGCAAAG 60.478 57.143 0.00 0.00 0.00 2.77
3795 4617 0.552848 GGGAGATGGGGAGATGCAAA 59.447 55.000 0.00 0.00 0.00 3.68
3796 4618 0.327867 AGGGAGATGGGGAGATGCAA 60.328 55.000 0.00 0.00 0.00 4.08
3797 4619 0.327867 AAGGGAGATGGGGAGATGCA 60.328 55.000 0.00 0.00 0.00 3.96
3798 4620 0.849417 AAAGGGAGATGGGGAGATGC 59.151 55.000 0.00 0.00 0.00 3.91
3847 4677 2.708051 CATGTGCTTCAGTCCATCACT 58.292 47.619 0.00 0.00 34.67 3.41
3852 4682 2.026915 ACTATGCATGTGCTTCAGTCCA 60.027 45.455 10.16 0.00 42.66 4.02
4173 5004 9.377312 ACTAGAAACAGAAGAGCATTTCTAATC 57.623 33.333 0.00 3.04 41.01 1.75
4217 5048 3.004106 GTGCAGCAAAGTCTCTCACAATT 59.996 43.478 0.00 0.00 0.00 2.32
4226 5057 7.452880 TTTCTTAATATGTGCAGCAAAGTCT 57.547 32.000 0.00 0.00 0.00 3.24
4301 5135 7.047891 TGCATACTACTCAAAAGTAAGGATGG 58.952 38.462 0.00 0.00 37.53 3.51
4350 5184 6.783892 TTCAATTGCCATTACTTTTCAAGC 57.216 33.333 0.00 0.00 0.00 4.01
4398 5232 2.036098 CAGCCCATTCCTGCACCA 59.964 61.111 0.00 0.00 0.00 4.17
4525 5359 3.435601 GCCATGAGGGACCTTACATGATT 60.436 47.826 17.14 0.00 41.45 2.57
4730 5564 1.001406 GTCACTGGTCAAGACTGAGGG 59.999 57.143 0.00 0.00 30.14 4.30
4731 5565 1.688735 TGTCACTGGTCAAGACTGAGG 59.311 52.381 0.00 0.00 33.56 3.86
4733 5567 2.101415 CACTGTCACTGGTCAAGACTGA 59.899 50.000 13.06 0.00 35.83 3.41
4744 5585 6.481976 TGTTGTACTAAATTCCACTGTCACTG 59.518 38.462 0.00 0.00 0.00 3.66
4771 5616 6.553100 ACTTAAAAAGTTGATGGGATGACCAA 59.447 34.615 0.00 0.00 46.73 3.67
4776 5628 6.434028 TCCTGACTTAAAAAGTTGATGGGATG 59.566 38.462 0.00 0.00 43.03 3.51
4851 5703 6.109156 TGAGGTTGATCTTTAAGCAGTACA 57.891 37.500 0.00 0.00 0.00 2.90
4912 5764 7.993183 ACCCAGTATGATTGTACCTTGATAAAG 59.007 37.037 0.00 0.00 39.69 1.85
4913 5765 7.867921 ACCCAGTATGATTGTACCTTGATAAA 58.132 34.615 0.00 0.00 39.69 1.40
4915 5767 6.844388 AGACCCAGTATGATTGTACCTTGATA 59.156 38.462 0.00 0.00 39.69 2.15
4922 5774 5.854010 TCTGAGACCCAGTATGATTGTAC 57.146 43.478 0.00 0.00 43.38 2.90
4942 5794 2.105821 TGACCACATTCCCGACTTTTCT 59.894 45.455 0.00 0.00 0.00 2.52
4952 5804 5.163622 CCAGTTGATATGTTGACCACATTCC 60.164 44.000 0.00 0.00 44.40 3.01
4966 5818 1.142262 GGTTACCGCCCCAGTTGATAT 59.858 52.381 0.00 0.00 0.00 1.63
5024 5876 6.713450 GGAGAAACACCATACCTACAAAGAAA 59.287 38.462 0.00 0.00 0.00 2.52
5107 5959 1.656441 CACTGGCCACTTCAACTGC 59.344 57.895 0.00 0.00 0.00 4.40
5213 6068 2.475487 GCTTGTCAACGTGGAGAAGTAC 59.525 50.000 25.77 10.72 39.59 2.73
5303 6158 1.688197 ACAACATGTCCCCTTTTGCAG 59.312 47.619 0.00 0.00 0.00 4.41
5325 6180 1.127343 AAGGCCTAGAGCATGAGTCC 58.873 55.000 5.16 0.00 46.50 3.85
5440 6295 8.791675 TCAGCAAACATTTTGTACAAGATATGA 58.208 29.630 23.16 13.57 0.00 2.15
5512 6368 8.456471 GTGTACTTAAACAAAAACAGGAAGAGT 58.544 33.333 0.00 0.00 0.00 3.24
5575 6437 8.682128 TTAGAACTTTTGTCAATGTTTGTCAC 57.318 30.769 6.10 0.00 31.96 3.67
5683 6551 2.030893 CAGTGCTCCAAAATGCTTTCGA 60.031 45.455 0.00 0.00 0.00 3.71
5720 6622 0.865769 ACATTTGTCGAAGTCACGGC 59.134 50.000 0.00 0.00 38.42 5.68
5722 6624 4.389664 AATCACATTTGTCGAAGTCACG 57.610 40.909 0.00 0.00 0.00 4.35
5723 6625 5.747565 TGAAATCACATTTGTCGAAGTCAC 58.252 37.500 0.00 0.00 31.47 3.67
5724 6626 6.204495 TCATGAAATCACATTTGTCGAAGTCA 59.796 34.615 0.00 0.00 31.47 3.41
5725 6627 6.602179 TCATGAAATCACATTTGTCGAAGTC 58.398 36.000 0.00 0.00 31.47 3.01
5726 6628 6.558771 TCATGAAATCACATTTGTCGAAGT 57.441 33.333 0.00 0.00 31.47 3.01
5727 6629 7.245604 TCATCATGAAATCACATTTGTCGAAG 58.754 34.615 0.00 0.00 31.47 3.79
5728 6630 7.143514 TCATCATGAAATCACATTTGTCGAA 57.856 32.000 0.00 0.00 31.47 3.71
5729 6631 6.740411 TCATCATGAAATCACATTTGTCGA 57.260 33.333 0.00 0.00 31.47 4.20
5730 6632 7.800015 TTTCATCATGAAATCACATTTGTCG 57.200 32.000 8.85 0.00 41.02 4.35
5758 6660 9.950680 CATTGACAAAAGTTCTAAGAGCTTAAA 57.049 29.630 0.00 0.00 32.21 1.52
5759 6661 9.120538 ACATTGACAAAAGTTCTAAGAGCTTAA 57.879 29.630 0.00 0.00 32.21 1.85
5760 6662 8.677148 ACATTGACAAAAGTTCTAAGAGCTTA 57.323 30.769 0.00 0.00 32.21 3.09
5857 6763 2.039879 GGGAAAGTAACCTTCTCAGGCA 59.960 50.000 0.00 0.00 45.56 4.75
5893 6799 6.072199 TGAAAATTTATTGGGATTTGGGGG 57.928 37.500 0.00 0.00 0.00 5.40
5930 6836 5.450592 TTGAACGGGTTATTTTTGTACCC 57.549 39.130 0.00 0.00 46.59 3.69
5943 6849 1.959985 TGCAATGTCAATTGAACGGGT 59.040 42.857 10.35 0.00 45.17 5.28
5963 7056 1.631405 TGCTATGCAAAACCTGGCTT 58.369 45.000 0.00 0.00 34.76 4.35
5965 7058 1.477700 TCATGCTATGCAAAACCTGGC 59.522 47.619 0.00 0.00 43.62 4.85
5971 7064 5.868801 GCTTTAAGGTTCATGCTATGCAAAA 59.131 36.000 0.00 0.00 43.62 2.44
6004 7097 1.202533 CCGATTCATAGCGACCTTGGT 60.203 52.381 0.00 0.00 34.48 3.67
6010 7103 2.601763 ACGAAAACCGATTCATAGCGAC 59.398 45.455 0.00 0.00 41.76 5.19
6028 7121 0.250684 TGGGCTCTTTTGCATCACGA 60.251 50.000 0.00 0.00 34.04 4.35
6074 7168 2.441378 CCACGTATCACACCGCACG 61.441 63.158 0.00 0.00 40.15 5.34
6106 7200 6.756299 TTAGGAGTTAAACAAACAAACCGT 57.244 33.333 0.00 0.00 40.83 4.83
6107 7201 7.645402 AGATTAGGAGTTAAACAAACAAACCG 58.355 34.615 0.00 0.00 40.83 4.44
6134 7228 8.827177 ACAATCGAAGTTGTGTAGATTAGAAA 57.173 30.769 3.65 0.00 40.60 2.52
6175 7286 5.116074 CACAACATCGATGTGCTTCTTTTTC 59.884 40.000 30.57 0.00 41.42 2.29
6233 7364 5.649395 TCCAAAATAGCTCCAAACATGAGAG 59.351 40.000 0.00 1.04 31.26 3.20
6235 7366 5.183713 TGTCCAAAATAGCTCCAAACATGAG 59.816 40.000 0.00 0.00 0.00 2.90
6268 7400 2.097299 GTCGACGTGCGTGACAAATTTA 60.097 45.455 0.00 0.00 41.80 1.40
6288 7420 5.725362 TGGTCAAAAGAAATTTCAAACGGT 58.275 33.333 19.99 0.00 0.00 4.83
6290 7422 9.030301 ACTATTGGTCAAAAGAAATTTCAAACG 57.970 29.630 19.99 6.21 0.00 3.60
6344 7476 2.275253 CGAAACAGAAAACGTGCAACAC 59.725 45.455 0.00 0.00 35.74 3.32
6345 7477 2.159824 TCGAAACAGAAAACGTGCAACA 59.840 40.909 0.00 0.00 35.74 3.33
6346 7478 2.776330 TCGAAACAGAAAACGTGCAAC 58.224 42.857 0.00 0.00 0.00 4.17
6375 7514 5.943416 CGAGGGAGATGTAGATCTACTCATT 59.057 44.000 28.53 14.55 39.34 2.57
6377 7516 4.348461 ACGAGGGAGATGTAGATCTACTCA 59.652 45.833 28.53 13.79 39.34 3.41
6414 7553 8.480643 AGAATAAGGAGTGTCATTAAAACGAG 57.519 34.615 0.00 0.00 0.00 4.18
6416 7555 7.549488 AGGAGAATAAGGAGTGTCATTAAAACG 59.451 37.037 0.00 0.00 0.00 3.60
6484 7632 2.881266 GCGAGTGCAACAAGACGCA 61.881 57.895 0.00 0.00 42.82 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.