Multiple sequence alignment - TraesCS5D01G201000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G201000 chr5D 100.000 5941 0 0 1 5941 304499091 304493151 0.000000e+00 10972.0
1 TraesCS5D01G201000 chr5D 100.000 2635 0 0 6323 8957 304492769 304490135 0.000000e+00 4867.0
2 TraesCS5D01G201000 chr5D 86.002 943 108 18 3824 4753 304494088 304493157 0.000000e+00 989.0
3 TraesCS5D01G201000 chr5D 86.002 943 108 18 5004 5935 304495268 304494339 0.000000e+00 989.0
4 TraesCS5D01G201000 chr5D 81.683 202 23 5 4821 5008 304492769 304492568 1.200000e-33 156.0
5 TraesCS5D01G201000 chr5D 81.683 202 23 5 6323 6524 304494271 304494084 1.200000e-33 156.0
6 TraesCS5D01G201000 chr5D 94.737 38 1 1 490 526 304498392 304498355 3.490000e-04 58.4
7 TraesCS5D01G201000 chr5D 94.737 38 1 1 700 737 304498602 304498566 3.490000e-04 58.4
8 TraesCS5D01G201000 chr5B 97.304 2782 69 6 3130 5908 349183629 349180851 0.000000e+00 4717.0
9 TraesCS5D01G201000 chr5B 93.825 3093 108 29 114 3168 349186666 349183619 0.000000e+00 4577.0
10 TraesCS5D01G201000 chr5B 96.135 2303 60 9 6343 8644 349180638 349178364 0.000000e+00 3733.0
11 TraesCS5D01G201000 chr5B 85.456 942 116 16 5004 5935 349182934 349182004 0.000000e+00 961.0
12 TraesCS5D01G201000 chr5B 85.496 917 109 18 3824 4727 349181755 349180850 0.000000e+00 935.0
13 TraesCS5D01G201000 chr5B 83.060 183 16 6 4841 5008 349180638 349180456 1.560000e-32 152.0
14 TraesCS5D01G201000 chr5B 85.849 106 8 4 6514 6612 137736139 137736034 1.230000e-18 106.0
15 TraesCS5D01G201000 chr5B 82.178 101 11 5 431 526 349186169 349186071 7.450000e-11 80.5
16 TraesCS5D01G201000 chr5A 95.360 2608 82 17 1 2587 393469592 393472181 0.000000e+00 4109.0
17 TraesCS5D01G201000 chr5A 93.739 2284 79 15 6394 8643 393476213 393478466 0.000000e+00 3367.0
18 TraesCS5D01G201000 chr5A 95.538 1367 41 7 3284 4644 393473031 393474383 0.000000e+00 2169.0
19 TraesCS5D01G201000 chr5A 95.143 1297 48 3 4643 5935 393474465 393475750 0.000000e+00 2032.0
20 TraesCS5D01G201000 chr5A 95.697 674 26 3 2629 3301 393472181 393472852 0.000000e+00 1081.0
21 TraesCS5D01G201000 chr5A 86.093 942 107 18 3826 4754 393474821 393475751 0.000000e+00 992.0
22 TraesCS5D01G201000 chr5A 84.734 845 104 15 4994 5825 393473551 393474383 0.000000e+00 822.0
23 TraesCS5D01G201000 chr5A 81.865 193 19 7 6325 6514 393474645 393474824 2.010000e-31 148.0
24 TraesCS5D01G201000 chr5A 94.737 38 2 0 700 737 393470081 393470118 9.710000e-05 60.2
25 TraesCS5D01G201000 chr5A 94.737 38 1 1 490 526 393470292 393470329 3.490000e-04 58.4
26 TraesCS5D01G201000 chr6D 98.423 317 4 1 8642 8957 142853947 142853631 2.830000e-154 556.0
27 TraesCS5D01G201000 chr6D 98.403 313 5 0 8645 8957 142849078 142848766 1.310000e-152 551.0
28 TraesCS5D01G201000 chr6D 96.497 314 9 2 8645 8957 11245590 11245902 1.330000e-142 518.0
29 TraesCS5D01G201000 chr7D 97.188 320 6 3 8638 8957 45539263 45539579 1.020000e-148 538.0
30 TraesCS5D01G201000 chr7D 97.444 313 7 1 8645 8957 45544106 45544417 4.760000e-147 532.0
31 TraesCS5D01G201000 chr7D 90.909 88 2 5 6530 6611 498229922 498229835 7.350000e-21 113.0
32 TraesCS5D01G201000 chr3D 97.764 313 6 1 8645 8957 497047619 497047930 1.020000e-148 538.0
33 TraesCS5D01G201000 chr3D 96.166 313 4 3 8645 8957 497042508 497042812 1.040000e-138 505.0
34 TraesCS5D01G201000 chr3D 88.542 96 4 5 6529 6617 434025881 434025786 9.510000e-20 110.0
35 TraesCS5D01G201000 chr4A 92.698 315 20 2 8644 8956 119690807 119690494 1.370000e-122 451.0
36 TraesCS5D01G201000 chr4A 92.675 314 20 2 8645 8956 119685940 119685628 4.930000e-122 449.0
37 TraesCS5D01G201000 chr4A 90.805 87 4 4 6529 6612 670947500 670947415 7.350000e-21 113.0
38 TraesCS5D01G201000 chr7B 90.217 92 2 5 6526 6610 26883101 26883010 7.350000e-21 113.0
39 TraesCS5D01G201000 chr3B 90.000 90 4 4 6530 6614 55740976 55741065 2.640000e-20 111.0
40 TraesCS5D01G201000 chr4B 87.500 96 5 4 6525 6613 659147069 659147164 4.420000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G201000 chr5D 304490135 304499091 8956 True 5331.666667 10972 93.894333 1 8957 3 chr5D.!!$R1 8956
1 TraesCS5D01G201000 chr5D 304493157 304498602 5445 True 450.160000 989 88.632200 490 6524 5 chr5D.!!$R2 6034
2 TraesCS5D01G201000 chr5B 349178364 349186666 8302 True 2165.071429 4717 89.064857 114 8644 7 chr5B.!!$R2 8530
3 TraesCS5D01G201000 chr5A 393469592 393478466 8874 False 1483.860000 4109 91.764300 1 8643 10 chr5A.!!$F1 8642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 227 0.106918 TTGGGCGAAGGTGAGTGTTT 60.107 50.000 0.00 0.0 0.00 2.83 F
235 240 1.541588 GAGTGTTTGTCCATTGGAGCC 59.458 52.381 5.39 0.0 29.39 4.70 F
477 490 4.680440 GCCTTTGTGGATTTGTGTTCTTGT 60.680 41.667 0.00 0.0 38.35 3.16 F
6373 6751 4.191544 TGACAGTGCTATCAACTTATGGC 58.808 43.478 0.00 0.0 34.21 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
6332 6710 0.627469 ATGCCACAATACCTCCCCCT 60.627 55.000 0.00 0.00 0.00 4.79 R
6373 6751 2.676471 CTTGCCAAACCTCCCCGG 60.676 66.667 0.00 0.00 39.35 5.73 R
6461 6968 8.068892 ACCCATATTTTAAACATCCGCTTTTA 57.931 30.769 0.00 0.00 0.00 1.52 R
8738 9282 0.030638 TTGCAACCTTCGAGCAAAGC 59.969 50.000 6.56 0.99 44.39 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.809601 CTCGGTTCTTGGTCCGCG 60.810 66.667 0.00 0.00 45.44 6.46
41 42 1.388065 ATTGCCTCCTCCTCGTCTCG 61.388 60.000 0.00 0.00 0.00 4.04
42 43 2.438795 GCCTCCTCCTCGTCTCGT 60.439 66.667 0.00 0.00 0.00 4.18
56 57 3.715854 CTCGTGGGGTTCGAGTTAG 57.284 57.895 7.10 0.00 46.22 2.34
69 71 1.612676 GAGTTAGGCGTGGGGTTTTT 58.387 50.000 0.00 0.00 0.00 1.94
98 100 2.035449 GGGTTCTTTTTGGTTCCTTCGG 59.965 50.000 0.00 0.00 0.00 4.30
112 114 1.339055 CCTTCGGCTGGAATTCTGACA 60.339 52.381 5.23 0.00 33.26 3.58
134 136 0.946221 CTGACTCTGGTTCGTGTGGC 60.946 60.000 0.00 0.00 0.00 5.01
195 200 2.265904 GGTGAAGTTTGGCCGACCC 61.266 63.158 0.00 0.00 33.59 4.46
222 227 0.106918 TTGGGCGAAGGTGAGTGTTT 60.107 50.000 0.00 0.00 0.00 2.83
229 234 2.878406 CGAAGGTGAGTGTTTGTCCATT 59.122 45.455 0.00 0.00 0.00 3.16
235 240 1.541588 GAGTGTTTGTCCATTGGAGCC 59.458 52.381 5.39 0.00 29.39 4.70
396 405 4.759693 GGGTTGTAATGATGATATTGCCGA 59.240 41.667 0.00 0.00 0.00 5.54
422 431 6.386654 CCAAAATAGGCGACTTTTTATGTGT 58.613 36.000 7.15 0.00 40.14 3.72
425 434 6.422776 AATAGGCGACTTTTTATGTGTGAG 57.577 37.500 0.00 0.00 43.67 3.51
434 447 9.953825 CGACTTTTTATGTGTGAGTAGTATTTC 57.046 33.333 0.00 0.00 0.00 2.17
477 490 4.680440 GCCTTTGTGGATTTGTGTTCTTGT 60.680 41.667 0.00 0.00 38.35 3.16
478 491 5.451242 GCCTTTGTGGATTTGTGTTCTTGTA 60.451 40.000 0.00 0.00 38.35 2.41
5935 6313 7.798596 TTCAGATCTCATATTTCTTGAAGGC 57.201 36.000 0.00 0.00 0.00 4.35
5936 6314 6.892485 TCAGATCTCATATTTCTTGAAGGCA 58.108 36.000 0.00 0.00 0.00 4.75
5937 6315 6.990939 TCAGATCTCATATTTCTTGAAGGCAG 59.009 38.462 0.00 0.00 0.00 4.85
5938 6316 6.205076 CAGATCTCATATTTCTTGAAGGCAGG 59.795 42.308 0.00 0.00 0.00 4.85
5939 6317 5.441718 TCTCATATTTCTTGAAGGCAGGT 57.558 39.130 0.00 0.00 0.00 4.00
5940 6318 5.188434 TCTCATATTTCTTGAAGGCAGGTG 58.812 41.667 0.00 0.00 0.00 4.00
6373 6751 4.191544 TGACAGTGCTATCAACTTATGGC 58.808 43.478 0.00 0.00 34.21 4.40
6939 7466 0.907486 TGTGCTCAGCTAAGCCATCT 59.093 50.000 6.35 0.00 41.77 2.90
7422 7951 1.251527 TGTCTCCTCCAAGCGAGTCC 61.252 60.000 0.00 0.00 36.82 3.85
7533 8062 1.229177 TGGTCTGCACTCCTGGCTA 60.229 57.895 4.39 0.00 0.00 3.93
7608 8137 2.594303 CCTCGCCAACACCTTGCA 60.594 61.111 0.00 0.00 0.00 4.08
7611 8140 4.326766 CGCCAACACCTTGCACCG 62.327 66.667 0.00 0.00 0.00 4.94
7677 8206 2.419297 GCTCCCGTCTGAAGAATCATGT 60.419 50.000 0.00 0.00 34.37 3.21
7721 8250 6.675002 GCAGCAGATCTCAAGAAAATGTACAG 60.675 42.308 0.33 0.00 0.00 2.74
7724 8253 4.872691 AGATCTCAAGAAAATGTACAGGCG 59.127 41.667 0.33 0.00 0.00 5.52
7807 8336 4.894798 GACAAATCGTCAGAGACTGAAC 57.105 45.455 2.98 0.00 42.46 3.18
7860 8389 2.792890 CGCAATGTTCGATCGACTCTCT 60.793 50.000 19.26 0.00 0.00 3.10
7914 8443 2.031465 GTGAAACGGGAGGCGGAA 59.969 61.111 0.00 0.00 0.00 4.30
7971 8500 9.119329 CGCACAGAGTAAGTTATAAGATCATAC 57.881 37.037 0.00 0.00 0.00 2.39
8063 8592 7.120873 AGAGAAGAAGAATGATGGTGATGTTTG 59.879 37.037 0.00 0.00 0.00 2.93
8065 8594 5.327732 AGAAGAATGATGGTGATGTTTGGT 58.672 37.500 0.00 0.00 0.00 3.67
8331 8860 0.472044 TGGCACTTGGCAGTAACAGA 59.528 50.000 0.49 0.00 46.12 3.41
8409 8945 8.387190 TCTGTTTTTCTATATGGCAGATGATG 57.613 34.615 4.57 0.00 0.00 3.07
8496 9040 1.466167 GAGTTTGTGCGCTCATGTCAT 59.534 47.619 13.60 0.00 0.00 3.06
8497 9041 1.198408 AGTTTGTGCGCTCATGTCATG 59.802 47.619 13.60 6.47 0.00 3.07
8538 9082 1.162698 CCGGATGAATAGGCTGCATG 58.837 55.000 0.00 0.00 0.00 4.06
8636 9180 3.522731 CCACTCCTCTCGCTCCCG 61.523 72.222 0.00 0.00 0.00 5.14
8648 9192 3.114616 CTCCCGTCGCTGCTGTTG 61.115 66.667 0.00 0.00 0.00 3.33
8649 9193 3.573772 CTCCCGTCGCTGCTGTTGA 62.574 63.158 0.00 0.00 0.00 3.18
8650 9194 2.664851 CCCGTCGCTGCTGTTGAA 60.665 61.111 0.00 0.00 0.00 2.69
8651 9195 2.034879 CCCGTCGCTGCTGTTGAAT 61.035 57.895 0.00 0.00 0.00 2.57
8652 9196 1.577328 CCCGTCGCTGCTGTTGAATT 61.577 55.000 0.00 0.00 0.00 2.17
8653 9197 1.075542 CCGTCGCTGCTGTTGAATTA 58.924 50.000 0.00 0.00 0.00 1.40
8654 9198 1.463056 CCGTCGCTGCTGTTGAATTAA 59.537 47.619 0.00 0.00 0.00 1.40
8655 9199 2.095969 CCGTCGCTGCTGTTGAATTAAA 60.096 45.455 0.00 0.00 0.00 1.52
8656 9200 3.550561 CGTCGCTGCTGTTGAATTAAAA 58.449 40.909 0.00 0.00 0.00 1.52
8657 9201 3.357823 CGTCGCTGCTGTTGAATTAAAAC 59.642 43.478 0.00 0.00 0.00 2.43
8658 9202 3.668656 GTCGCTGCTGTTGAATTAAAACC 59.331 43.478 0.00 0.00 0.00 3.27
8659 9203 2.986479 CGCTGCTGTTGAATTAAAACCC 59.014 45.455 0.00 0.00 0.00 4.11
8660 9204 3.325870 GCTGCTGTTGAATTAAAACCCC 58.674 45.455 0.00 0.00 0.00 4.95
8661 9205 3.574614 CTGCTGTTGAATTAAAACCCCG 58.425 45.455 2.03 0.00 0.00 5.73
8662 9206 3.223435 TGCTGTTGAATTAAAACCCCGA 58.777 40.909 2.03 0.00 0.00 5.14
8663 9207 3.254657 TGCTGTTGAATTAAAACCCCGAG 59.745 43.478 2.03 0.00 0.00 4.63
8664 9208 3.833442 CTGTTGAATTAAAACCCCGAGC 58.167 45.455 2.03 0.00 0.00 5.03
8665 9209 2.559231 TGTTGAATTAAAACCCCGAGCC 59.441 45.455 2.03 0.00 0.00 4.70
8666 9210 1.842052 TGAATTAAAACCCCGAGCCC 58.158 50.000 0.00 0.00 0.00 5.19
8667 9211 1.356398 TGAATTAAAACCCCGAGCCCT 59.644 47.619 0.00 0.00 0.00 5.19
8668 9212 1.749063 GAATTAAAACCCCGAGCCCTG 59.251 52.381 0.00 0.00 0.00 4.45
8669 9213 0.702316 ATTAAAACCCCGAGCCCTGT 59.298 50.000 0.00 0.00 0.00 4.00
8670 9214 0.037160 TTAAAACCCCGAGCCCTGTC 59.963 55.000 0.00 0.00 0.00 3.51
8671 9215 1.128809 TAAAACCCCGAGCCCTGTCA 61.129 55.000 0.00 0.00 0.00 3.58
8672 9216 2.002018 AAAACCCCGAGCCCTGTCAA 62.002 55.000 0.00 0.00 0.00 3.18
8673 9217 2.002018 AAACCCCGAGCCCTGTCAAA 62.002 55.000 0.00 0.00 0.00 2.69
8674 9218 2.045926 CCCCGAGCCCTGTCAAAG 60.046 66.667 0.00 0.00 0.00 2.77
8675 9219 2.750350 CCCGAGCCCTGTCAAAGT 59.250 61.111 0.00 0.00 0.00 2.66
8676 9220 1.073199 CCCGAGCCCTGTCAAAGTT 59.927 57.895 0.00 0.00 0.00 2.66
8677 9221 0.955919 CCCGAGCCCTGTCAAAGTTC 60.956 60.000 0.00 0.00 0.00 3.01
8678 9222 0.250295 CCGAGCCCTGTCAAAGTTCA 60.250 55.000 0.00 0.00 0.00 3.18
8679 9223 1.151668 CGAGCCCTGTCAAAGTTCAG 58.848 55.000 0.00 0.00 0.00 3.02
8680 9224 1.541233 CGAGCCCTGTCAAAGTTCAGT 60.541 52.381 0.00 0.00 0.00 3.41
8681 9225 2.576615 GAGCCCTGTCAAAGTTCAGTT 58.423 47.619 0.00 0.00 0.00 3.16
8682 9226 3.740115 GAGCCCTGTCAAAGTTCAGTTA 58.260 45.455 0.00 0.00 0.00 2.24
8683 9227 3.744660 AGCCCTGTCAAAGTTCAGTTAG 58.255 45.455 0.00 0.00 0.00 2.34
8684 9228 2.226674 GCCCTGTCAAAGTTCAGTTAGC 59.773 50.000 0.00 0.00 0.00 3.09
8685 9229 3.744660 CCCTGTCAAAGTTCAGTTAGCT 58.255 45.455 0.00 0.00 0.00 3.32
8686 9230 4.802918 GCCCTGTCAAAGTTCAGTTAGCTA 60.803 45.833 0.00 0.00 0.00 3.32
8687 9231 4.932200 CCCTGTCAAAGTTCAGTTAGCTAG 59.068 45.833 0.00 0.00 0.00 3.42
8688 9232 5.511545 CCCTGTCAAAGTTCAGTTAGCTAGT 60.512 44.000 0.00 0.00 0.00 2.57
8689 9233 5.992217 CCTGTCAAAGTTCAGTTAGCTAGTT 59.008 40.000 0.00 0.00 0.00 2.24
8690 9234 6.483640 CCTGTCAAAGTTCAGTTAGCTAGTTT 59.516 38.462 0.00 0.00 0.00 2.66
8691 9235 7.012421 CCTGTCAAAGTTCAGTTAGCTAGTTTT 59.988 37.037 0.00 0.00 0.00 2.43
8692 9236 8.276252 TGTCAAAGTTCAGTTAGCTAGTTTTT 57.724 30.769 0.00 0.00 0.00 1.94
8693 9237 8.395633 TGTCAAAGTTCAGTTAGCTAGTTTTTC 58.604 33.333 0.00 0.00 0.00 2.29
8694 9238 8.613482 GTCAAAGTTCAGTTAGCTAGTTTTTCT 58.387 33.333 0.00 0.00 0.00 2.52
8695 9239 8.612619 TCAAAGTTCAGTTAGCTAGTTTTTCTG 58.387 33.333 0.00 0.00 0.00 3.02
8696 9240 8.398665 CAAAGTTCAGTTAGCTAGTTTTTCTGT 58.601 33.333 0.00 0.00 0.00 3.41
8697 9241 7.716768 AGTTCAGTTAGCTAGTTTTTCTGTC 57.283 36.000 0.00 0.00 0.00 3.51
8698 9242 7.272978 AGTTCAGTTAGCTAGTTTTTCTGTCA 58.727 34.615 0.00 0.00 0.00 3.58
8699 9243 7.439655 AGTTCAGTTAGCTAGTTTTTCTGTCAG 59.560 37.037 0.00 0.00 0.00 3.51
8700 9244 6.223852 TCAGTTAGCTAGTTTTTCTGTCAGG 58.776 40.000 0.00 0.00 0.00 3.86
8701 9245 5.992217 CAGTTAGCTAGTTTTTCTGTCAGGT 59.008 40.000 0.00 0.00 0.00 4.00
8702 9246 6.483640 CAGTTAGCTAGTTTTTCTGTCAGGTT 59.516 38.462 0.00 0.00 0.00 3.50
8703 9247 7.656137 CAGTTAGCTAGTTTTTCTGTCAGGTTA 59.344 37.037 0.00 0.00 0.00 2.85
8704 9248 7.873505 AGTTAGCTAGTTTTTCTGTCAGGTTAG 59.126 37.037 0.00 0.00 0.00 2.34
8705 9249 4.998033 AGCTAGTTTTTCTGTCAGGTTAGC 59.002 41.667 0.00 5.35 33.13 3.09
8706 9250 4.998033 GCTAGTTTTTCTGTCAGGTTAGCT 59.002 41.667 0.00 0.00 0.00 3.32
8707 9251 5.470437 GCTAGTTTTTCTGTCAGGTTAGCTT 59.530 40.000 0.00 0.00 0.00 3.74
8708 9252 6.017026 GCTAGTTTTTCTGTCAGGTTAGCTTT 60.017 38.462 0.00 0.00 0.00 3.51
8709 9253 6.378710 AGTTTTTCTGTCAGGTTAGCTTTC 57.621 37.500 0.00 0.00 0.00 2.62
8710 9254 5.299531 AGTTTTTCTGTCAGGTTAGCTTTCC 59.700 40.000 0.00 0.00 0.00 3.13
8711 9255 3.418684 TTCTGTCAGGTTAGCTTTCCC 57.581 47.619 0.00 0.00 0.00 3.97
8712 9256 1.628846 TCTGTCAGGTTAGCTTTCCCC 59.371 52.381 0.00 0.00 0.00 4.81
8713 9257 1.630878 CTGTCAGGTTAGCTTTCCCCT 59.369 52.381 0.00 0.00 0.00 4.79
8714 9258 2.040412 CTGTCAGGTTAGCTTTCCCCTT 59.960 50.000 0.00 0.00 0.00 3.95
8715 9259 2.445525 TGTCAGGTTAGCTTTCCCCTTT 59.554 45.455 0.00 0.00 0.00 3.11
8716 9260 3.117284 TGTCAGGTTAGCTTTCCCCTTTT 60.117 43.478 0.00 0.00 0.00 2.27
8717 9261 3.895656 GTCAGGTTAGCTTTCCCCTTTTT 59.104 43.478 0.00 0.00 0.00 1.94
8738 9282 6.377327 TTTTTCAGTCTTTCTGTTAGCTGG 57.623 37.500 0.00 0.00 43.97 4.85
8739 9283 3.045601 TCAGTCTTTCTGTTAGCTGGC 57.954 47.619 0.00 0.00 43.97 4.85
8740 9284 2.634940 TCAGTCTTTCTGTTAGCTGGCT 59.365 45.455 0.00 0.00 43.97 4.75
8741 9285 3.071602 TCAGTCTTTCTGTTAGCTGGCTT 59.928 43.478 0.00 0.00 43.97 4.35
8742 9286 3.817647 CAGTCTTTCTGTTAGCTGGCTTT 59.182 43.478 0.00 0.00 39.17 3.51
8743 9287 3.817647 AGTCTTTCTGTTAGCTGGCTTTG 59.182 43.478 0.00 0.00 0.00 2.77
8744 9288 2.554032 TCTTTCTGTTAGCTGGCTTTGC 59.446 45.455 0.00 0.00 0.00 3.68
8745 9289 2.276732 TTCTGTTAGCTGGCTTTGCT 57.723 45.000 0.00 5.67 43.79 3.91
8746 9290 1.813513 TCTGTTAGCTGGCTTTGCTC 58.186 50.000 0.00 0.00 41.46 4.26
8747 9291 0.445436 CTGTTAGCTGGCTTTGCTCG 59.555 55.000 0.00 0.00 41.46 5.03
8748 9292 0.034756 TGTTAGCTGGCTTTGCTCGA 59.965 50.000 0.00 0.00 41.46 4.04
8749 9293 1.156736 GTTAGCTGGCTTTGCTCGAA 58.843 50.000 0.00 0.00 41.46 3.71
8750 9294 1.129437 GTTAGCTGGCTTTGCTCGAAG 59.871 52.381 0.00 0.00 41.46 3.79
8751 9295 0.391661 TAGCTGGCTTTGCTCGAAGG 60.392 55.000 0.00 0.00 41.46 3.46
8752 9296 1.968540 GCTGGCTTTGCTCGAAGGT 60.969 57.895 0.00 0.00 0.00 3.50
8753 9297 1.518903 GCTGGCTTTGCTCGAAGGTT 61.519 55.000 0.00 0.00 0.00 3.50
8754 9298 0.239347 CTGGCTTTGCTCGAAGGTTG 59.761 55.000 0.00 0.00 0.00 3.77
8755 9299 1.081175 GGCTTTGCTCGAAGGTTGC 60.081 57.895 0.00 0.00 0.00 4.17
8756 9300 1.654220 GCTTTGCTCGAAGGTTGCA 59.346 52.632 0.00 0.00 34.69 4.08
8757 9301 0.030638 GCTTTGCTCGAAGGTTGCAA 59.969 50.000 5.04 5.04 43.69 4.08
8758 9302 1.758783 CTTTGCTCGAAGGTTGCAAC 58.241 50.000 21.59 21.59 44.81 4.17
8759 9303 0.028770 TTTGCTCGAAGGTTGCAACG 59.971 50.000 22.67 11.93 44.81 4.10
8760 9304 1.781025 TTGCTCGAAGGTTGCAACGG 61.781 55.000 22.67 12.01 41.06 4.44
8761 9305 2.556287 CTCGAAGGTTGCAACGGC 59.444 61.111 22.67 13.14 41.68 5.68
8762 9306 2.966309 CTCGAAGGTTGCAACGGCC 61.966 63.158 22.67 9.95 40.13 6.13
8763 9307 2.978010 CGAAGGTTGCAACGGCCT 60.978 61.111 22.67 12.22 40.13 5.19
8764 9308 2.644992 GAAGGTTGCAACGGCCTG 59.355 61.111 22.67 0.00 40.13 4.85
8765 9309 2.912025 AAGGTTGCAACGGCCTGG 60.912 61.111 22.67 0.00 40.13 4.45
8766 9310 3.429372 AAGGTTGCAACGGCCTGGA 62.429 57.895 22.67 0.00 40.13 3.86
8767 9311 3.365265 GGTTGCAACGGCCTGGAG 61.365 66.667 22.67 0.00 40.13 3.86
8768 9312 4.043200 GTTGCAACGGCCTGGAGC 62.043 66.667 14.90 0.00 40.13 4.70
8772 9316 4.379243 CAACGGCCTGGAGCGAGT 62.379 66.667 0.00 0.00 45.17 4.18
8773 9317 4.070552 AACGGCCTGGAGCGAGTC 62.071 66.667 0.00 0.00 45.17 3.36
8776 9320 4.803426 GGCCTGGAGCGAGTCGTG 62.803 72.222 15.08 0.04 45.17 4.35
8786 9330 3.470567 GAGTCGTGCGCCTCGTTG 61.471 66.667 18.47 0.00 0.00 4.10
8787 9331 3.891586 GAGTCGTGCGCCTCGTTGA 62.892 63.158 18.47 0.95 0.00 3.18
8788 9332 2.809601 GTCGTGCGCCTCGTTGAT 60.810 61.111 18.47 0.00 0.00 2.57
8789 9333 2.506217 TCGTGCGCCTCGTTGATC 60.506 61.111 18.47 0.00 0.00 2.92
8790 9334 2.507102 CGTGCGCCTCGTTGATCT 60.507 61.111 4.18 0.00 0.00 2.75
8791 9335 2.792290 CGTGCGCCTCGTTGATCTG 61.792 63.158 4.18 0.00 0.00 2.90
8792 9336 2.815211 TGCGCCTCGTTGATCTGC 60.815 61.111 4.18 0.00 0.00 4.26
8793 9337 2.510238 GCGCCTCGTTGATCTGCT 60.510 61.111 0.00 0.00 0.00 4.24
8794 9338 2.520904 GCGCCTCGTTGATCTGCTC 61.521 63.158 0.00 0.00 0.00 4.26
8795 9339 2.226896 CGCCTCGTTGATCTGCTCG 61.227 63.158 0.00 0.00 0.00 5.03
8796 9340 1.153745 GCCTCGTTGATCTGCTCGT 60.154 57.895 0.00 0.00 0.00 4.18
8797 9341 1.416813 GCCTCGTTGATCTGCTCGTG 61.417 60.000 0.00 0.00 0.00 4.35
8798 9342 0.803768 CCTCGTTGATCTGCTCGTGG 60.804 60.000 0.00 0.91 0.00 4.94
8799 9343 0.803768 CTCGTTGATCTGCTCGTGGG 60.804 60.000 0.00 0.00 0.00 4.61
8800 9344 1.215382 CGTTGATCTGCTCGTGGGA 59.785 57.895 0.00 0.00 0.00 4.37
8801 9345 0.179100 CGTTGATCTGCTCGTGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
8802 9346 1.293924 GTTGATCTGCTCGTGGGATG 58.706 55.000 0.00 0.00 0.00 3.51
8803 9347 0.178767 TTGATCTGCTCGTGGGATGG 59.821 55.000 0.00 0.00 0.00 3.51
8804 9348 1.596477 GATCTGCTCGTGGGATGGC 60.596 63.158 0.00 0.00 0.00 4.40
8805 9349 2.315781 GATCTGCTCGTGGGATGGCA 62.316 60.000 0.00 0.00 0.00 4.92
8806 9350 2.599645 ATCTGCTCGTGGGATGGCAC 62.600 60.000 0.00 0.00 0.00 5.01
8807 9351 4.758251 TGCTCGTGGGATGGCACG 62.758 66.667 0.00 0.00 45.09 5.34
8810 9354 4.451150 TCGTGGGATGGCACGAGC 62.451 66.667 0.00 0.00 46.91 5.03
8812 9356 4.760047 GTGGGATGGCACGAGCGT 62.760 66.667 0.00 0.00 43.41 5.07
8813 9357 4.015406 TGGGATGGCACGAGCGTT 62.015 61.111 0.00 0.00 43.41 4.84
8814 9358 3.499737 GGGATGGCACGAGCGTTG 61.500 66.667 0.00 0.00 43.41 4.10
8815 9359 2.742372 GGATGGCACGAGCGTTGT 60.742 61.111 0.00 0.00 43.41 3.32
8816 9360 2.476051 GATGGCACGAGCGTTGTG 59.524 61.111 0.00 2.21 43.41 3.33
8817 9361 3.027170 GATGGCACGAGCGTTGTGG 62.027 63.158 0.00 0.00 43.41 4.17
8818 9362 3.529341 ATGGCACGAGCGTTGTGGA 62.529 57.895 0.00 0.00 43.41 4.02
8819 9363 2.742372 GGCACGAGCGTTGTGGAT 60.742 61.111 0.00 0.00 43.41 3.41
8820 9364 2.740714 GGCACGAGCGTTGTGGATC 61.741 63.158 0.00 0.00 43.41 3.36
8821 9365 2.027073 GCACGAGCGTTGTGGATCA 61.027 57.895 7.87 0.00 37.80 2.92
8822 9366 1.781555 CACGAGCGTTGTGGATCAC 59.218 57.895 0.00 0.00 33.69 3.06
8823 9367 1.733041 ACGAGCGTTGTGGATCACG 60.733 57.895 0.00 0.00 37.14 4.35
8824 9368 1.733041 CGAGCGTTGTGGATCACGT 60.733 57.895 5.37 0.00 37.14 4.49
8825 9369 0.455464 CGAGCGTTGTGGATCACGTA 60.455 55.000 5.37 0.00 37.14 3.57
8826 9370 1.269166 GAGCGTTGTGGATCACGTAG 58.731 55.000 5.37 0.00 37.14 3.51
8827 9371 0.108804 AGCGTTGTGGATCACGTAGG 60.109 55.000 5.37 0.00 37.14 3.18
8828 9372 1.693083 GCGTTGTGGATCACGTAGGC 61.693 60.000 5.37 0.00 37.14 3.93
8829 9373 1.410737 CGTTGTGGATCACGTAGGCG 61.411 60.000 0.00 0.00 44.93 5.52
8830 9374 1.447140 TTGTGGATCACGTAGGCGC 60.447 57.895 0.00 0.00 42.83 6.53
8831 9375 2.585247 GTGGATCACGTAGGCGCC 60.585 66.667 21.89 21.89 42.83 6.53
8832 9376 3.071837 TGGATCACGTAGGCGCCA 61.072 61.111 31.54 12.31 42.83 5.69
8833 9377 2.185867 GGATCACGTAGGCGCCAA 59.814 61.111 31.54 6.66 42.83 4.52
8834 9378 1.883084 GGATCACGTAGGCGCCAAG 60.883 63.158 31.54 21.17 42.83 3.61
8835 9379 1.153628 GATCACGTAGGCGCCAAGT 60.154 57.895 31.54 21.88 42.83 3.16
8836 9380 1.146358 GATCACGTAGGCGCCAAGTC 61.146 60.000 31.54 14.27 42.83 3.01
8837 9381 1.884075 ATCACGTAGGCGCCAAGTCA 61.884 55.000 31.54 12.51 42.83 3.41
8838 9382 2.094659 CACGTAGGCGCCAAGTCAG 61.095 63.158 31.54 15.48 42.83 3.51
8839 9383 2.509336 CGTAGGCGCCAAGTCAGG 60.509 66.667 31.54 9.61 0.00 3.86
8840 9384 2.125106 GTAGGCGCCAAGTCAGGG 60.125 66.667 31.54 0.00 0.00 4.45
8841 9385 3.399181 TAGGCGCCAAGTCAGGGG 61.399 66.667 31.54 0.00 43.92 4.79
8847 9391 3.636231 CCAAGTCAGGGGCCACGA 61.636 66.667 4.39 0.00 0.00 4.35
8848 9392 2.671070 CAAGTCAGGGGCCACGAT 59.329 61.111 4.39 0.00 0.00 3.73
8849 9393 1.450312 CAAGTCAGGGGCCACGATC 60.450 63.158 4.39 0.00 0.00 3.69
8850 9394 2.670148 AAGTCAGGGGCCACGATCC 61.670 63.158 4.39 0.00 0.00 3.36
8851 9395 4.176752 GTCAGGGGCCACGATCCC 62.177 72.222 4.39 0.00 43.46 3.85
8856 9400 3.728373 GGGCCACGATCCCCAGTT 61.728 66.667 4.39 0.00 41.13 3.16
8857 9401 2.355115 GGCCACGATCCCCAGTTT 59.645 61.111 0.00 0.00 0.00 2.66
8858 9402 1.749258 GGCCACGATCCCCAGTTTC 60.749 63.158 0.00 0.00 0.00 2.78
8859 9403 1.749258 GCCACGATCCCCAGTTTCC 60.749 63.158 0.00 0.00 0.00 3.13
8860 9404 1.077716 CCACGATCCCCAGTTTCCC 60.078 63.158 0.00 0.00 0.00 3.97
8861 9405 1.077716 CACGATCCCCAGTTTCCCC 60.078 63.158 0.00 0.00 0.00 4.81
8862 9406 1.229853 ACGATCCCCAGTTTCCCCT 60.230 57.895 0.00 0.00 0.00 4.79
8863 9407 1.272554 ACGATCCCCAGTTTCCCCTC 61.273 60.000 0.00 0.00 0.00 4.30
8864 9408 0.983378 CGATCCCCAGTTTCCCCTCT 60.983 60.000 0.00 0.00 0.00 3.69
8865 9409 0.548510 GATCCCCAGTTTCCCCTCTG 59.451 60.000 0.00 0.00 0.00 3.35
8866 9410 0.178831 ATCCCCAGTTTCCCCTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
8867 9411 0.494551 TCCCCAGTTTCCCCTCTGTA 59.505 55.000 0.00 0.00 0.00 2.74
8868 9412 0.618981 CCCCAGTTTCCCCTCTGTAC 59.381 60.000 0.00 0.00 0.00 2.90
8869 9413 1.657804 CCCAGTTTCCCCTCTGTACT 58.342 55.000 0.00 0.00 0.00 2.73
8870 9414 1.555533 CCCAGTTTCCCCTCTGTACTC 59.444 57.143 0.00 0.00 0.00 2.59
8871 9415 2.541466 CCAGTTTCCCCTCTGTACTCT 58.459 52.381 0.00 0.00 0.00 3.24
8872 9416 2.234908 CCAGTTTCCCCTCTGTACTCTG 59.765 54.545 0.00 0.00 0.00 3.35
8873 9417 3.165875 CAGTTTCCCCTCTGTACTCTGA 58.834 50.000 0.00 0.00 0.00 3.27
8874 9418 3.578716 CAGTTTCCCCTCTGTACTCTGAA 59.421 47.826 0.00 0.00 0.00 3.02
8875 9419 4.223923 CAGTTTCCCCTCTGTACTCTGAAT 59.776 45.833 0.00 0.00 0.00 2.57
8876 9420 5.422331 CAGTTTCCCCTCTGTACTCTGAATA 59.578 44.000 0.00 0.00 0.00 1.75
8877 9421 6.023603 AGTTTCCCCTCTGTACTCTGAATAA 58.976 40.000 0.00 0.00 0.00 1.40
8878 9422 6.500751 AGTTTCCCCTCTGTACTCTGAATAAA 59.499 38.462 0.00 0.00 0.00 1.40
8879 9423 7.182930 AGTTTCCCCTCTGTACTCTGAATAAAT 59.817 37.037 0.00 0.00 0.00 1.40
8880 9424 8.483758 GTTTCCCCTCTGTACTCTGAATAAATA 58.516 37.037 0.00 0.00 0.00 1.40
8881 9425 7.841282 TCCCCTCTGTACTCTGAATAAATAG 57.159 40.000 0.00 0.00 0.00 1.73
8882 9426 7.592736 TCCCCTCTGTACTCTGAATAAATAGA 58.407 38.462 0.00 0.00 0.00 1.98
8883 9427 8.065627 TCCCCTCTGTACTCTGAATAAATAGAA 58.934 37.037 0.00 0.00 0.00 2.10
8884 9428 8.364142 CCCCTCTGTACTCTGAATAAATAGAAG 58.636 40.741 0.00 0.00 0.00 2.85
8885 9429 7.870445 CCCTCTGTACTCTGAATAAATAGAAGC 59.130 40.741 0.00 0.00 0.00 3.86
8886 9430 8.417106 CCTCTGTACTCTGAATAAATAGAAGCA 58.583 37.037 0.00 0.00 0.00 3.91
8887 9431 9.809096 CTCTGTACTCTGAATAAATAGAAGCAA 57.191 33.333 0.00 0.00 0.00 3.91
8888 9432 9.809096 TCTGTACTCTGAATAAATAGAAGCAAG 57.191 33.333 0.00 0.00 0.00 4.01
8889 9433 9.809096 CTGTACTCTGAATAAATAGAAGCAAGA 57.191 33.333 0.00 0.00 0.00 3.02
8893 9437 9.171877 ACTCTGAATAAATAGAAGCAAGAAAGG 57.828 33.333 0.00 0.00 0.00 3.11
8894 9438 9.388506 CTCTGAATAAATAGAAGCAAGAAAGGA 57.611 33.333 0.00 0.00 0.00 3.36
8895 9439 9.388506 TCTGAATAAATAGAAGCAAGAAAGGAG 57.611 33.333 0.00 0.00 0.00 3.69
8896 9440 7.989826 TGAATAAATAGAAGCAAGAAAGGAGC 58.010 34.615 0.00 0.00 0.00 4.70
8897 9441 7.611467 TGAATAAATAGAAGCAAGAAAGGAGCA 59.389 33.333 0.00 0.00 0.00 4.26
8898 9442 5.893897 AAATAGAAGCAAGAAAGGAGCAG 57.106 39.130 0.00 0.00 0.00 4.24
8899 9443 4.833478 ATAGAAGCAAGAAAGGAGCAGA 57.167 40.909 0.00 0.00 0.00 4.26
8900 9444 3.498774 AGAAGCAAGAAAGGAGCAGAA 57.501 42.857 0.00 0.00 0.00 3.02
8901 9445 3.825328 AGAAGCAAGAAAGGAGCAGAAA 58.175 40.909 0.00 0.00 0.00 2.52
8902 9446 4.210331 AGAAGCAAGAAAGGAGCAGAAAA 58.790 39.130 0.00 0.00 0.00 2.29
8903 9447 4.277921 AGAAGCAAGAAAGGAGCAGAAAAG 59.722 41.667 0.00 0.00 0.00 2.27
8904 9448 2.295629 AGCAAGAAAGGAGCAGAAAAGC 59.704 45.455 0.00 0.00 0.00 3.51
8906 9450 3.856267 GCAAGAAAGGAGCAGAAAAGCTG 60.856 47.826 0.00 0.00 46.75 4.24
8907 9451 3.220674 AGAAAGGAGCAGAAAAGCTGT 57.779 42.857 0.00 0.00 46.75 4.40
8908 9452 2.883386 AGAAAGGAGCAGAAAAGCTGTG 59.117 45.455 0.00 0.00 46.75 3.66
8909 9453 2.645838 AAGGAGCAGAAAAGCTGTGA 57.354 45.000 0.00 0.00 46.75 3.58
8910 9454 2.645838 AGGAGCAGAAAAGCTGTGAA 57.354 45.000 0.00 0.00 46.75 3.18
8911 9455 2.502295 AGGAGCAGAAAAGCTGTGAAG 58.498 47.619 0.00 0.00 46.75 3.02
8912 9456 2.158696 AGGAGCAGAAAAGCTGTGAAGT 60.159 45.455 0.00 0.00 46.75 3.01
8913 9457 2.620585 GGAGCAGAAAAGCTGTGAAGTT 59.379 45.455 0.00 0.00 46.75 2.66
8914 9458 3.067320 GGAGCAGAAAAGCTGTGAAGTTT 59.933 43.478 0.00 0.00 46.75 2.66
8915 9459 4.275936 GGAGCAGAAAAGCTGTGAAGTTTA 59.724 41.667 0.00 0.00 46.75 2.01
8916 9460 5.175090 AGCAGAAAAGCTGTGAAGTTTAC 57.825 39.130 0.00 0.00 46.62 2.01
8917 9461 4.640201 AGCAGAAAAGCTGTGAAGTTTACA 59.360 37.500 0.07 0.07 46.62 2.41
8918 9462 4.972440 GCAGAAAAGCTGTGAAGTTTACAG 59.028 41.667 20.45 20.45 46.62 2.74
8924 9468 3.332761 CTGTGAAGTTTACAGCGCAAA 57.667 42.857 14.13 0.00 39.09 3.68
8925 9469 3.690422 CTGTGAAGTTTACAGCGCAAAA 58.310 40.909 14.13 4.13 39.09 2.44
8926 9470 4.098055 TGTGAAGTTTACAGCGCAAAAA 57.902 36.364 11.47 3.71 0.00 1.94
8927 9471 3.854809 TGTGAAGTTTACAGCGCAAAAAC 59.145 39.130 11.47 16.32 34.13 2.43
8928 9472 3.854809 GTGAAGTTTACAGCGCAAAAACA 59.145 39.130 24.58 13.86 35.93 2.83
8929 9473 3.854809 TGAAGTTTACAGCGCAAAAACAC 59.145 39.130 24.58 19.50 35.93 3.32
8930 9474 3.775661 AGTTTACAGCGCAAAAACACT 57.224 38.095 24.58 11.92 35.93 3.55
8931 9475 4.104696 AGTTTACAGCGCAAAAACACTT 57.895 36.364 24.58 9.53 35.93 3.16
8932 9476 4.102649 AGTTTACAGCGCAAAAACACTTC 58.897 39.130 24.58 6.75 35.93 3.01
8933 9477 4.102649 GTTTACAGCGCAAAAACACTTCT 58.897 39.130 20.49 0.00 34.12 2.85
8934 9478 2.193306 ACAGCGCAAAAACACTTCTG 57.807 45.000 11.47 0.00 0.00 3.02
8935 9479 1.472480 ACAGCGCAAAAACACTTCTGT 59.528 42.857 11.47 0.00 0.00 3.41
8936 9480 2.094752 ACAGCGCAAAAACACTTCTGTT 60.095 40.909 11.47 0.00 42.81 3.16
8937 9481 2.531508 CAGCGCAAAAACACTTCTGTTC 59.468 45.455 11.47 0.00 39.88 3.18
8938 9482 2.423538 AGCGCAAAAACACTTCTGTTCT 59.576 40.909 11.47 0.00 39.88 3.01
8939 9483 3.119495 AGCGCAAAAACACTTCTGTTCTT 60.119 39.130 11.47 0.00 39.88 2.52
8940 9484 3.240631 GCGCAAAAACACTTCTGTTCTTC 59.759 43.478 0.30 0.00 39.88 2.87
8941 9485 3.478516 CGCAAAAACACTTCTGTTCTTCG 59.521 43.478 0.00 0.00 39.88 3.79
8942 9486 4.412207 GCAAAAACACTTCTGTTCTTCGT 58.588 39.130 0.00 0.00 39.88 3.85
8943 9487 4.495828 GCAAAAACACTTCTGTTCTTCGTC 59.504 41.667 0.00 0.00 39.88 4.20
8944 9488 4.877323 AAAACACTTCTGTTCTTCGTCC 57.123 40.909 0.00 0.00 39.88 4.79
8945 9489 3.536956 AACACTTCTGTTCTTCGTCCA 57.463 42.857 0.00 0.00 35.57 4.02
8946 9490 3.753294 ACACTTCTGTTCTTCGTCCAT 57.247 42.857 0.00 0.00 0.00 3.41
8947 9491 3.654414 ACACTTCTGTTCTTCGTCCATC 58.346 45.455 0.00 0.00 0.00 3.51
8948 9492 3.322254 ACACTTCTGTTCTTCGTCCATCT 59.678 43.478 0.00 0.00 0.00 2.90
8949 9493 4.523173 ACACTTCTGTTCTTCGTCCATCTA 59.477 41.667 0.00 0.00 0.00 1.98
8950 9494 5.098893 CACTTCTGTTCTTCGTCCATCTAG 58.901 45.833 0.00 0.00 0.00 2.43
8951 9495 5.010933 ACTTCTGTTCTTCGTCCATCTAGA 58.989 41.667 0.00 0.00 0.00 2.43
8952 9496 5.124776 ACTTCTGTTCTTCGTCCATCTAGAG 59.875 44.000 0.00 0.00 0.00 2.43
8953 9497 3.378742 TCTGTTCTTCGTCCATCTAGAGC 59.621 47.826 0.00 0.00 0.00 4.09
8954 9498 3.357203 TGTTCTTCGTCCATCTAGAGCT 58.643 45.455 0.00 0.00 0.00 4.09
8955 9499 3.378742 TGTTCTTCGTCCATCTAGAGCTC 59.621 47.826 5.27 5.27 0.00 4.09
8956 9500 3.569194 TCTTCGTCCATCTAGAGCTCT 57.431 47.619 22.17 22.17 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.376812 AATCCGCGGACCAAGAACC 60.377 57.895 33.75 0.00 0.00 3.62
41 42 1.447314 CGCCTAACTCGAACCCCAC 60.447 63.158 0.00 0.00 0.00 4.61
42 43 1.909781 ACGCCTAACTCGAACCCCA 60.910 57.895 0.00 0.00 0.00 4.96
55 56 2.523168 CCCAAAAACCCCACGCCT 60.523 61.111 0.00 0.00 0.00 5.52
56 57 3.621805 CCCCAAAAACCCCACGCC 61.622 66.667 0.00 0.00 0.00 5.68
69 71 1.840635 CCAAAAAGAACCCAAACCCCA 59.159 47.619 0.00 0.00 0.00 4.96
98 100 2.999355 GTCAGTCTGTCAGAATTCCAGC 59.001 50.000 3.51 0.24 0.00 4.85
112 114 1.338337 CACACGAACCAGAGTCAGTCT 59.662 52.381 0.00 0.00 35.00 3.24
123 125 3.660111 GCCACAGCCACACGAACC 61.660 66.667 0.00 0.00 0.00 3.62
195 200 1.106944 ACCTTCGCCCAAACCAACTG 61.107 55.000 0.00 0.00 0.00 3.16
205 210 0.818040 ACAAACACTCACCTTCGCCC 60.818 55.000 0.00 0.00 0.00 6.13
209 214 3.004734 CCAATGGACAAACACTCACCTTC 59.995 47.826 0.00 0.00 0.00 3.46
222 227 0.331278 AAATCGGGCTCCAATGGACA 59.669 50.000 0.00 0.00 0.00 4.02
229 234 1.143183 GCTACGAAATCGGGCTCCA 59.857 57.895 7.81 0.00 44.95 3.86
422 431 7.277981 GCGAGGAAGAAAATGAAATACTACTCA 59.722 37.037 0.00 0.00 0.00 3.41
425 434 7.303634 TGCGAGGAAGAAAATGAAATACTAC 57.696 36.000 0.00 0.00 0.00 2.73
434 447 2.982470 GCACTTTGCGAGGAAGAAAATG 59.018 45.455 0.00 0.00 31.71 2.32
6332 6710 0.627469 ATGCCACAATACCTCCCCCT 60.627 55.000 0.00 0.00 0.00 4.79
6373 6751 2.676471 CTTGCCAAACCTCCCCGG 60.676 66.667 0.00 0.00 39.35 5.73
6460 6967 8.532819 ACCCATATTTTAAACATCCGCTTTTAA 58.467 29.630 0.00 0.00 0.00 1.52
6461 6968 8.068892 ACCCATATTTTAAACATCCGCTTTTA 57.931 30.769 0.00 0.00 0.00 1.52
7211 7738 6.719370 TCAACCTTTGCATACTACCTGAAAAT 59.281 34.615 0.00 0.00 0.00 1.82
7216 7743 4.396166 CCTTCAACCTTTGCATACTACCTG 59.604 45.833 0.00 0.00 0.00 4.00
7304 7833 1.660355 GTCTGCCTGTCAGTGTCGA 59.340 57.895 0.00 0.00 43.32 4.20
7422 7951 2.514592 ATCAAGGCATGTCCGCGG 60.515 61.111 22.12 22.12 40.77 6.46
7533 8062 1.094785 GTTGCACCACACAGTTCTGT 58.905 50.000 0.00 0.00 0.00 3.41
7562 8091 1.918800 AGGTTTCCTCCCCCTGACG 60.919 63.158 0.00 0.00 0.00 4.35
7608 8137 1.286248 AGAGAACAAATAGGGGCGGT 58.714 50.000 0.00 0.00 0.00 5.68
7611 8140 2.379005 CCCAAGAGAACAAATAGGGGC 58.621 52.381 0.00 0.00 0.00 5.80
7677 8206 2.106338 TGCAAGGTTCTTGATGGAGTCA 59.894 45.455 11.35 0.00 34.25 3.41
7724 8253 1.584380 CTTCTGTTCTGCTGCCTGGC 61.584 60.000 12.87 12.87 0.00 4.85
7807 8336 1.751927 GCAGGGTTGCCATCTCTGG 60.752 63.158 4.87 0.00 44.74 3.86
7860 8389 0.543277 CCATGGCACCTGAGAGCTTA 59.457 55.000 0.00 0.00 0.00 3.09
7971 8500 4.217118 CCTGAACTCAAGAAAATGACCTGG 59.783 45.833 0.00 0.00 0.00 4.45
8037 8566 6.310764 ACATCACCATCATTCTTCTTCTCT 57.689 37.500 0.00 0.00 0.00 3.10
8043 8572 5.649782 ACCAAACATCACCATCATTCTTC 57.350 39.130 0.00 0.00 0.00 2.87
8063 8592 5.876460 ACAGTTCACGGTATATACCAAAACC 59.124 40.000 27.58 14.05 46.80 3.27
8065 8594 8.259411 ACATACAGTTCACGGTATATACCAAAA 58.741 33.333 27.58 16.55 46.80 2.44
8243 8772 1.670406 AAGCAGGCAGAGAAGCACG 60.670 57.895 0.00 0.00 35.83 5.34
8308 8837 1.266989 GTTACTGCCAAGTGCCAAGAC 59.733 52.381 0.00 0.00 40.16 3.01
8331 8860 1.692042 CAGGCCCAGGACTCAGGAT 60.692 63.158 0.00 0.00 0.00 3.24
8409 8945 4.043200 GAAGCCCTGTTGCACGGC 62.043 66.667 5.37 5.37 43.35 5.68
8426 8962 4.081752 ACTCTGAGCACATACAGAAGAAGG 60.082 45.833 4.19 0.00 41.58 3.46
8496 9040 3.080641 CATCAGGGAGGCCACACA 58.919 61.111 5.01 0.00 0.00 3.72
8497 9041 2.439156 GCATCAGGGAGGCCACAC 60.439 66.667 5.01 0.00 32.93 3.82
8538 9082 6.283694 TGAGGTGTGATTTCTATCTATGCAC 58.716 40.000 0.00 0.00 0.00 4.57
8636 9180 3.668656 GGTTTTAATTCAACAGCAGCGAC 59.331 43.478 0.00 0.00 0.00 5.19
8644 9188 2.559231 GGCTCGGGGTTTTAATTCAACA 59.441 45.455 3.53 0.00 0.00 3.33
8645 9189 2.094390 GGGCTCGGGGTTTTAATTCAAC 60.094 50.000 0.00 0.00 0.00 3.18
8646 9190 2.172679 GGGCTCGGGGTTTTAATTCAA 58.827 47.619 0.00 0.00 0.00 2.69
8647 9191 1.356398 AGGGCTCGGGGTTTTAATTCA 59.644 47.619 0.00 0.00 0.00 2.57
8648 9192 1.749063 CAGGGCTCGGGGTTTTAATTC 59.251 52.381 0.00 0.00 0.00 2.17
8649 9193 1.076513 ACAGGGCTCGGGGTTTTAATT 59.923 47.619 0.00 0.00 0.00 1.40
8650 9194 0.702316 ACAGGGCTCGGGGTTTTAAT 59.298 50.000 0.00 0.00 0.00 1.40
8651 9195 0.037160 GACAGGGCTCGGGGTTTTAA 59.963 55.000 0.00 0.00 0.00 1.52
8652 9196 1.128809 TGACAGGGCTCGGGGTTTTA 61.129 55.000 0.00 0.00 0.00 1.52
8653 9197 2.002018 TTGACAGGGCTCGGGGTTTT 62.002 55.000 0.00 0.00 0.00 2.43
8654 9198 2.002018 TTTGACAGGGCTCGGGGTTT 62.002 55.000 0.00 0.00 0.00 3.27
8655 9199 2.411765 CTTTGACAGGGCTCGGGGTT 62.412 60.000 0.00 0.00 0.00 4.11
8656 9200 2.852075 TTTGACAGGGCTCGGGGT 60.852 61.111 0.00 0.00 0.00 4.95
8657 9201 2.045926 CTTTGACAGGGCTCGGGG 60.046 66.667 0.00 0.00 0.00 5.73
8658 9202 0.955919 GAACTTTGACAGGGCTCGGG 60.956 60.000 0.00 0.00 0.00 5.14
8659 9203 0.250295 TGAACTTTGACAGGGCTCGG 60.250 55.000 0.00 0.00 0.00 4.63
8660 9204 1.151668 CTGAACTTTGACAGGGCTCG 58.848 55.000 0.00 0.00 0.00 5.03
8661 9205 2.262423 ACTGAACTTTGACAGGGCTC 57.738 50.000 0.00 0.00 38.30 4.70
8662 9206 2.736670 AACTGAACTTTGACAGGGCT 57.263 45.000 0.00 0.00 38.30 5.19
8663 9207 2.226674 GCTAACTGAACTTTGACAGGGC 59.773 50.000 0.00 0.00 38.30 5.19
8664 9208 3.744660 AGCTAACTGAACTTTGACAGGG 58.255 45.455 0.00 0.00 38.30 4.45
8665 9209 5.542779 ACTAGCTAACTGAACTTTGACAGG 58.457 41.667 0.00 0.00 38.30 4.00
8666 9210 7.484035 AAACTAGCTAACTGAACTTTGACAG 57.516 36.000 0.00 0.00 39.65 3.51
8667 9211 7.859325 AAAACTAGCTAACTGAACTTTGACA 57.141 32.000 0.00 0.00 0.00 3.58
8668 9212 8.613482 AGAAAAACTAGCTAACTGAACTTTGAC 58.387 33.333 0.00 0.00 0.00 3.18
8669 9213 8.612619 CAGAAAAACTAGCTAACTGAACTTTGA 58.387 33.333 0.00 0.00 0.00 2.69
8670 9214 8.398665 ACAGAAAAACTAGCTAACTGAACTTTG 58.601 33.333 0.00 0.00 0.00 2.77
8671 9215 8.507524 ACAGAAAAACTAGCTAACTGAACTTT 57.492 30.769 0.00 0.00 0.00 2.66
8672 9216 7.769044 TGACAGAAAAACTAGCTAACTGAACTT 59.231 33.333 0.00 0.00 0.00 2.66
8673 9217 7.272978 TGACAGAAAAACTAGCTAACTGAACT 58.727 34.615 0.00 0.00 0.00 3.01
8674 9218 7.307455 CCTGACAGAAAAACTAGCTAACTGAAC 60.307 40.741 3.32 0.00 0.00 3.18
8675 9219 6.706270 CCTGACAGAAAAACTAGCTAACTGAA 59.294 38.462 3.32 0.00 0.00 3.02
8676 9220 6.183360 ACCTGACAGAAAAACTAGCTAACTGA 60.183 38.462 3.32 0.00 0.00 3.41
8677 9221 5.992217 ACCTGACAGAAAAACTAGCTAACTG 59.008 40.000 3.32 0.00 0.00 3.16
8678 9222 6.176014 ACCTGACAGAAAAACTAGCTAACT 57.824 37.500 3.32 0.00 0.00 2.24
8679 9223 6.862711 AACCTGACAGAAAAACTAGCTAAC 57.137 37.500 3.32 0.00 0.00 2.34
8680 9224 6.649557 GCTAACCTGACAGAAAAACTAGCTAA 59.350 38.462 3.32 0.00 0.00 3.09
8681 9225 6.014499 AGCTAACCTGACAGAAAAACTAGCTA 60.014 38.462 3.32 0.00 34.70 3.32
8682 9226 4.998033 GCTAACCTGACAGAAAAACTAGCT 59.002 41.667 3.32 0.00 0.00 3.32
8683 9227 4.998033 AGCTAACCTGACAGAAAAACTAGC 59.002 41.667 3.32 6.66 0.00 3.42
8684 9228 7.308049 GGAAAGCTAACCTGACAGAAAAACTAG 60.308 40.741 3.32 0.00 0.00 2.57
8685 9229 6.485648 GGAAAGCTAACCTGACAGAAAAACTA 59.514 38.462 3.32 0.00 0.00 2.24
8686 9230 5.299531 GGAAAGCTAACCTGACAGAAAAACT 59.700 40.000 3.32 0.00 0.00 2.66
8687 9231 5.507482 GGGAAAGCTAACCTGACAGAAAAAC 60.507 44.000 3.32 0.00 0.00 2.43
8688 9232 4.583073 GGGAAAGCTAACCTGACAGAAAAA 59.417 41.667 3.32 0.00 0.00 1.94
8689 9233 4.142038 GGGAAAGCTAACCTGACAGAAAA 58.858 43.478 3.32 0.00 0.00 2.29
8690 9234 3.497942 GGGGAAAGCTAACCTGACAGAAA 60.498 47.826 3.32 0.00 0.00 2.52
8691 9235 2.039879 GGGGAAAGCTAACCTGACAGAA 59.960 50.000 3.32 0.00 0.00 3.02
8692 9236 1.628846 GGGGAAAGCTAACCTGACAGA 59.371 52.381 3.32 0.00 0.00 3.41
8693 9237 1.630878 AGGGGAAAGCTAACCTGACAG 59.369 52.381 8.64 0.00 30.71 3.51
8694 9238 1.742308 AGGGGAAAGCTAACCTGACA 58.258 50.000 8.64 0.00 30.71 3.58
8695 9239 2.881111 AAGGGGAAAGCTAACCTGAC 57.119 50.000 8.64 1.62 32.66 3.51
8696 9240 3.895704 AAAAGGGGAAAGCTAACCTGA 57.104 42.857 8.64 0.00 32.66 3.86
8721 9265 3.778954 AAGCCAGCTAACAGAAAGACT 57.221 42.857 0.00 0.00 0.00 3.24
8722 9266 3.610349 GCAAAGCCAGCTAACAGAAAGAC 60.610 47.826 0.00 0.00 0.00 3.01
8723 9267 2.554032 GCAAAGCCAGCTAACAGAAAGA 59.446 45.455 0.00 0.00 0.00 2.52
8724 9268 2.555757 AGCAAAGCCAGCTAACAGAAAG 59.444 45.455 0.00 0.00 41.32 2.62
8725 9269 2.554032 GAGCAAAGCCAGCTAACAGAAA 59.446 45.455 0.00 0.00 43.58 2.52
8726 9270 2.154462 GAGCAAAGCCAGCTAACAGAA 58.846 47.619 0.00 0.00 43.58 3.02
8727 9271 1.813513 GAGCAAAGCCAGCTAACAGA 58.186 50.000 0.00 0.00 43.58 3.41
8728 9272 0.445436 CGAGCAAAGCCAGCTAACAG 59.555 55.000 0.00 0.00 43.58 3.16
8729 9273 0.034756 TCGAGCAAAGCCAGCTAACA 59.965 50.000 0.00 0.00 43.58 2.41
8730 9274 1.129437 CTTCGAGCAAAGCCAGCTAAC 59.871 52.381 0.00 0.00 43.58 2.34
8731 9275 1.442769 CTTCGAGCAAAGCCAGCTAA 58.557 50.000 0.00 0.00 43.58 3.09
8732 9276 0.391661 CCTTCGAGCAAAGCCAGCTA 60.392 55.000 0.00 0.00 43.58 3.32
8733 9277 1.673665 CCTTCGAGCAAAGCCAGCT 60.674 57.895 0.00 0.00 46.82 4.24
8734 9278 1.518903 AACCTTCGAGCAAAGCCAGC 61.519 55.000 0.00 0.00 0.00 4.85
8735 9279 0.239347 CAACCTTCGAGCAAAGCCAG 59.761 55.000 0.00 0.00 0.00 4.85
8736 9280 1.795170 GCAACCTTCGAGCAAAGCCA 61.795 55.000 0.00 0.00 0.00 4.75
8737 9281 1.081175 GCAACCTTCGAGCAAAGCC 60.081 57.895 0.00 0.00 0.00 4.35
8738 9282 0.030638 TTGCAACCTTCGAGCAAAGC 59.969 50.000 6.56 0.99 44.39 3.51
8741 9285 1.646540 CGTTGCAACCTTCGAGCAA 59.353 52.632 23.42 5.04 45.07 3.91
8742 9286 2.250939 CCGTTGCAACCTTCGAGCA 61.251 57.895 23.42 0.00 36.32 4.26
8743 9287 2.556287 CCGTTGCAACCTTCGAGC 59.444 61.111 23.42 0.00 0.00 5.03
8744 9288 2.556287 GCCGTTGCAACCTTCGAG 59.444 61.111 23.42 8.36 37.47 4.04
8745 9289 2.975799 GGCCGTTGCAACCTTCGA 60.976 61.111 23.42 0.00 40.13 3.71
8746 9290 2.978010 AGGCCGTTGCAACCTTCG 60.978 61.111 23.42 11.87 40.13 3.79
8747 9291 2.644992 CAGGCCGTTGCAACCTTC 59.355 61.111 23.42 12.44 40.13 3.46
8748 9292 2.912025 CCAGGCCGTTGCAACCTT 60.912 61.111 23.42 4.32 40.13 3.50
8749 9293 3.850098 CTCCAGGCCGTTGCAACCT 62.850 63.158 23.42 12.51 40.13 3.50
8750 9294 3.365265 CTCCAGGCCGTTGCAACC 61.365 66.667 23.42 10.23 40.13 3.77
8751 9295 4.043200 GCTCCAGGCCGTTGCAAC 62.043 66.667 19.89 19.89 40.13 4.17
8755 9299 4.379243 ACTCGCTCCAGGCCGTTG 62.379 66.667 0.00 0.00 37.74 4.10
8756 9300 4.070552 GACTCGCTCCAGGCCGTT 62.071 66.667 0.00 0.00 37.74 4.44
8759 9303 4.803426 CACGACTCGCTCCAGGCC 62.803 72.222 0.00 0.00 37.74 5.19
8769 9313 3.470567 CAACGAGGCGCACGACTC 61.471 66.667 27.17 15.92 46.38 3.36
8770 9314 3.282745 ATCAACGAGGCGCACGACT 62.283 57.895 27.17 0.00 35.26 4.18
8771 9315 2.789203 GATCAACGAGGCGCACGAC 61.789 63.158 27.17 3.22 34.70 4.34
8772 9316 2.506217 GATCAACGAGGCGCACGA 60.506 61.111 27.17 10.11 34.70 4.35
8773 9317 2.507102 AGATCAACGAGGCGCACG 60.507 61.111 20.93 20.93 0.00 5.34
8774 9318 3.084579 CAGATCAACGAGGCGCAC 58.915 61.111 10.83 0.96 0.00 5.34
8775 9319 2.815211 GCAGATCAACGAGGCGCA 60.815 61.111 10.83 0.00 0.00 6.09
8776 9320 2.510238 AGCAGATCAACGAGGCGC 60.510 61.111 0.00 0.00 0.00 6.53
8777 9321 2.226896 CGAGCAGATCAACGAGGCG 61.227 63.158 0.00 0.00 0.00 5.52
8778 9322 1.153745 ACGAGCAGATCAACGAGGC 60.154 57.895 0.00 0.00 0.00 4.70
8779 9323 0.803768 CCACGAGCAGATCAACGAGG 60.804 60.000 0.00 0.00 0.00 4.63
8780 9324 0.803768 CCCACGAGCAGATCAACGAG 60.804 60.000 0.00 0.00 0.00 4.18
8781 9325 1.215382 CCCACGAGCAGATCAACGA 59.785 57.895 0.00 0.00 0.00 3.85
8782 9326 0.179100 ATCCCACGAGCAGATCAACG 60.179 55.000 0.00 0.00 0.00 4.10
8783 9327 1.293924 CATCCCACGAGCAGATCAAC 58.706 55.000 0.00 0.00 0.00 3.18
8784 9328 0.178767 CCATCCCACGAGCAGATCAA 59.821 55.000 0.00 0.00 0.00 2.57
8785 9329 1.825341 CCATCCCACGAGCAGATCA 59.175 57.895 0.00 0.00 0.00 2.92
8786 9330 1.596477 GCCATCCCACGAGCAGATC 60.596 63.158 0.00 0.00 0.00 2.75
8787 9331 2.369633 TGCCATCCCACGAGCAGAT 61.370 57.895 0.00 0.00 0.00 2.90
8788 9332 3.002583 TGCCATCCCACGAGCAGA 61.003 61.111 0.00 0.00 0.00 4.26
8789 9333 2.821366 GTGCCATCCCACGAGCAG 60.821 66.667 0.00 0.00 35.56 4.24
8795 9339 4.760047 ACGCTCGTGCCATCCCAC 62.760 66.667 3.52 0.00 35.36 4.61
8796 9340 4.015406 AACGCTCGTGCCATCCCA 62.015 61.111 3.52 0.00 35.36 4.37
8797 9341 3.499737 CAACGCTCGTGCCATCCC 61.500 66.667 3.52 0.00 35.36 3.85
8798 9342 2.742372 ACAACGCTCGTGCCATCC 60.742 61.111 3.52 0.00 35.36 3.51
8799 9343 2.476051 CACAACGCTCGTGCCATC 59.524 61.111 3.52 0.00 35.36 3.51
8800 9344 2.803155 ATCCACAACGCTCGTGCCAT 62.803 55.000 3.52 0.00 35.36 4.40
8801 9345 3.529341 ATCCACAACGCTCGTGCCA 62.529 57.895 3.52 0.00 35.36 4.92
8802 9346 2.740714 GATCCACAACGCTCGTGCC 61.741 63.158 3.52 0.00 35.36 5.01
8803 9347 2.027073 TGATCCACAACGCTCGTGC 61.027 57.895 0.00 0.00 32.85 5.34
8804 9348 1.781555 GTGATCCACAACGCTCGTG 59.218 57.895 0.00 0.00 34.08 4.35
8805 9349 1.733041 CGTGATCCACAACGCTCGT 60.733 57.895 0.00 0.00 33.40 4.18
8806 9350 0.455464 TACGTGATCCACAACGCTCG 60.455 55.000 0.00 0.00 33.40 5.03
8807 9351 1.269166 CTACGTGATCCACAACGCTC 58.731 55.000 0.00 0.00 33.40 5.03
8808 9352 0.108804 CCTACGTGATCCACAACGCT 60.109 55.000 0.00 0.00 33.40 5.07
8809 9353 1.693083 GCCTACGTGATCCACAACGC 61.693 60.000 0.00 0.00 33.40 4.84
8810 9354 1.410737 CGCCTACGTGATCCACAACG 61.411 60.000 0.00 2.09 33.40 4.10
8811 9355 1.693083 GCGCCTACGTGATCCACAAC 61.693 60.000 0.00 0.00 42.83 3.32
8812 9356 1.447140 GCGCCTACGTGATCCACAA 60.447 57.895 0.00 0.00 42.83 3.33
8813 9357 2.183300 GCGCCTACGTGATCCACA 59.817 61.111 0.00 0.00 42.83 4.17
8814 9358 2.585247 GGCGCCTACGTGATCCAC 60.585 66.667 22.15 0.00 42.83 4.02
8815 9359 2.572095 CTTGGCGCCTACGTGATCCA 62.572 60.000 29.70 0.00 42.83 3.41
8816 9360 1.883084 CTTGGCGCCTACGTGATCC 60.883 63.158 29.70 0.00 42.83 3.36
8817 9361 1.146358 GACTTGGCGCCTACGTGATC 61.146 60.000 29.70 11.46 42.83 2.92
8818 9362 1.153628 GACTTGGCGCCTACGTGAT 60.154 57.895 29.70 5.77 42.83 3.06
8819 9363 2.260434 GACTTGGCGCCTACGTGA 59.740 61.111 29.70 1.94 42.83 4.35
8820 9364 2.048597 TGACTTGGCGCCTACGTG 60.049 61.111 29.70 11.17 42.83 4.49
8821 9365 2.261671 CTGACTTGGCGCCTACGT 59.738 61.111 29.70 20.95 42.83 3.57
8822 9366 2.509336 CCTGACTTGGCGCCTACG 60.509 66.667 29.70 17.71 44.07 3.51
8823 9367 2.125106 CCCTGACTTGGCGCCTAC 60.125 66.667 29.70 15.95 0.00 3.18
8824 9368 3.399181 CCCCTGACTTGGCGCCTA 61.399 66.667 29.70 20.51 0.00 3.93
8830 9374 2.876368 GATCGTGGCCCCTGACTTGG 62.876 65.000 0.00 0.00 0.00 3.61
8831 9375 1.450312 GATCGTGGCCCCTGACTTG 60.450 63.158 0.00 0.00 0.00 3.16
8832 9376 2.670148 GGATCGTGGCCCCTGACTT 61.670 63.158 0.00 0.00 0.00 3.01
8833 9377 3.083997 GGATCGTGGCCCCTGACT 61.084 66.667 0.00 0.00 0.00 3.41
8834 9378 4.176752 GGGATCGTGGCCCCTGAC 62.177 72.222 0.00 0.00 39.81 3.51
8839 9383 3.282374 AAACTGGGGATCGTGGCCC 62.282 63.158 0.00 0.00 45.25 5.80
8840 9384 1.749258 GAAACTGGGGATCGTGGCC 60.749 63.158 0.00 0.00 0.00 5.36
8841 9385 1.749258 GGAAACTGGGGATCGTGGC 60.749 63.158 0.00 0.00 0.00 5.01
8842 9386 1.077716 GGGAAACTGGGGATCGTGG 60.078 63.158 0.00 0.00 0.00 4.94
8843 9387 1.077716 GGGGAAACTGGGGATCGTG 60.078 63.158 0.00 0.00 0.00 4.35
8844 9388 1.229853 AGGGGAAACTGGGGATCGT 60.230 57.895 0.00 0.00 0.00 3.73
8845 9389 0.983378 AGAGGGGAAACTGGGGATCG 60.983 60.000 0.00 0.00 0.00 3.69
8846 9390 0.548510 CAGAGGGGAAACTGGGGATC 59.451 60.000 0.00 0.00 0.00 3.36
8847 9391 0.178831 ACAGAGGGGAAACTGGGGAT 60.179 55.000 0.00 0.00 38.30 3.85
8848 9392 0.494551 TACAGAGGGGAAACTGGGGA 59.505 55.000 0.00 0.00 38.30 4.81
8849 9393 0.618981 GTACAGAGGGGAAACTGGGG 59.381 60.000 0.00 0.00 38.30 4.96
8850 9394 1.555533 GAGTACAGAGGGGAAACTGGG 59.444 57.143 0.00 0.00 38.30 4.45
8851 9395 2.234908 CAGAGTACAGAGGGGAAACTGG 59.765 54.545 0.00 0.00 38.30 4.00
8852 9396 3.165875 TCAGAGTACAGAGGGGAAACTG 58.834 50.000 0.00 0.00 39.65 3.16
8853 9397 3.544698 TCAGAGTACAGAGGGGAAACT 57.455 47.619 0.00 0.00 0.00 2.66
8854 9398 4.828072 ATTCAGAGTACAGAGGGGAAAC 57.172 45.455 0.00 0.00 0.00 2.78
8855 9399 6.945636 TTTATTCAGAGTACAGAGGGGAAA 57.054 37.500 0.00 0.00 0.00 3.13
8856 9400 8.065627 TCTATTTATTCAGAGTACAGAGGGGAA 58.934 37.037 0.00 0.00 0.00 3.97
8857 9401 7.592736 TCTATTTATTCAGAGTACAGAGGGGA 58.407 38.462 0.00 0.00 0.00 4.81
8858 9402 7.841282 TCTATTTATTCAGAGTACAGAGGGG 57.159 40.000 0.00 0.00 0.00 4.79
8859 9403 7.870445 GCTTCTATTTATTCAGAGTACAGAGGG 59.130 40.741 0.00 0.00 0.00 4.30
8860 9404 8.417106 TGCTTCTATTTATTCAGAGTACAGAGG 58.583 37.037 0.00 0.00 0.00 3.69
8861 9405 9.809096 TTGCTTCTATTTATTCAGAGTACAGAG 57.191 33.333 0.00 0.00 0.00 3.35
8862 9406 9.809096 CTTGCTTCTATTTATTCAGAGTACAGA 57.191 33.333 0.00 0.00 0.00 3.41
8863 9407 9.809096 TCTTGCTTCTATTTATTCAGAGTACAG 57.191 33.333 0.00 0.00 0.00 2.74
8867 9411 9.171877 CCTTTCTTGCTTCTATTTATTCAGAGT 57.828 33.333 0.00 0.00 0.00 3.24
8868 9412 9.388506 TCCTTTCTTGCTTCTATTTATTCAGAG 57.611 33.333 0.00 0.00 0.00 3.35
8869 9413 9.388506 CTCCTTTCTTGCTTCTATTTATTCAGA 57.611 33.333 0.00 0.00 0.00 3.27
8870 9414 8.127954 GCTCCTTTCTTGCTTCTATTTATTCAG 58.872 37.037 0.00 0.00 0.00 3.02
8871 9415 7.611467 TGCTCCTTTCTTGCTTCTATTTATTCA 59.389 33.333 0.00 0.00 0.00 2.57
8872 9416 7.989826 TGCTCCTTTCTTGCTTCTATTTATTC 58.010 34.615 0.00 0.00 0.00 1.75
8873 9417 7.831193 TCTGCTCCTTTCTTGCTTCTATTTATT 59.169 33.333 0.00 0.00 0.00 1.40
8874 9418 7.341805 TCTGCTCCTTTCTTGCTTCTATTTAT 58.658 34.615 0.00 0.00 0.00 1.40
8875 9419 6.711277 TCTGCTCCTTTCTTGCTTCTATTTA 58.289 36.000 0.00 0.00 0.00 1.40
8876 9420 5.564550 TCTGCTCCTTTCTTGCTTCTATTT 58.435 37.500 0.00 0.00 0.00 1.40
8877 9421 5.171339 TCTGCTCCTTTCTTGCTTCTATT 57.829 39.130 0.00 0.00 0.00 1.73
8878 9422 4.833478 TCTGCTCCTTTCTTGCTTCTAT 57.167 40.909 0.00 0.00 0.00 1.98
8879 9423 4.623932 TTCTGCTCCTTTCTTGCTTCTA 57.376 40.909 0.00 0.00 0.00 2.10
8880 9424 3.498774 TTCTGCTCCTTTCTTGCTTCT 57.501 42.857 0.00 0.00 0.00 2.85
8881 9425 4.544651 CTTTTCTGCTCCTTTCTTGCTTC 58.455 43.478 0.00 0.00 0.00 3.86
8882 9426 3.243670 GCTTTTCTGCTCCTTTCTTGCTT 60.244 43.478 0.00 0.00 0.00 3.91
8883 9427 2.295629 GCTTTTCTGCTCCTTTCTTGCT 59.704 45.455 0.00 0.00 0.00 3.91
8884 9428 2.295629 AGCTTTTCTGCTCCTTTCTTGC 59.704 45.455 0.00 0.00 39.34 4.01
8885 9429 3.317430 ACAGCTTTTCTGCTCCTTTCTTG 59.683 43.478 0.00 0.00 46.76 3.02
8886 9430 3.317430 CACAGCTTTTCTGCTCCTTTCTT 59.683 43.478 0.00 0.00 46.76 2.52
8887 9431 2.883386 CACAGCTTTTCTGCTCCTTTCT 59.117 45.455 0.00 0.00 46.76 2.52
8888 9432 2.880890 TCACAGCTTTTCTGCTCCTTTC 59.119 45.455 0.00 0.00 46.76 2.62
8889 9433 2.936202 TCACAGCTTTTCTGCTCCTTT 58.064 42.857 0.00 0.00 46.76 3.11
8890 9434 2.645838 TCACAGCTTTTCTGCTCCTT 57.354 45.000 0.00 0.00 46.76 3.36
8891 9435 2.158696 ACTTCACAGCTTTTCTGCTCCT 60.159 45.455 0.00 0.00 46.76 3.69
8892 9436 2.225467 ACTTCACAGCTTTTCTGCTCC 58.775 47.619 0.00 0.00 46.76 4.70
8893 9437 3.978718 AACTTCACAGCTTTTCTGCTC 57.021 42.857 0.00 0.00 46.76 4.26
8894 9438 4.640201 TGTAAACTTCACAGCTTTTCTGCT 59.360 37.500 0.00 0.00 46.76 4.24
8895 9439 4.920376 TGTAAACTTCACAGCTTTTCTGC 58.080 39.130 0.00 0.00 46.76 4.26
8904 9448 3.332761 TTTGCGCTGTAAACTTCACAG 57.667 42.857 9.73 0.00 45.08 3.66
8905 9449 3.766676 TTTTGCGCTGTAAACTTCACA 57.233 38.095 9.73 0.00 0.00 3.58
8906 9450 3.854809 TGTTTTTGCGCTGTAAACTTCAC 59.145 39.130 23.03 11.84 33.92 3.18
8907 9451 3.854809 GTGTTTTTGCGCTGTAAACTTCA 59.145 39.130 23.03 12.19 33.92 3.02
8908 9452 4.102649 AGTGTTTTTGCGCTGTAAACTTC 58.897 39.130 23.03 17.99 33.92 3.01
8909 9453 4.104696 AGTGTTTTTGCGCTGTAAACTT 57.895 36.364 23.03 14.12 33.92 2.66
8910 9454 3.775661 AGTGTTTTTGCGCTGTAAACT 57.224 38.095 23.03 12.69 33.92 2.66
8911 9455 4.027702 CAGAAGTGTTTTTGCGCTGTAAAC 60.028 41.667 9.73 15.90 33.50 2.01
8912 9456 4.101942 CAGAAGTGTTTTTGCGCTGTAAA 58.898 39.130 9.73 3.78 0.00 2.01
8913 9457 3.127895 ACAGAAGTGTTTTTGCGCTGTAA 59.872 39.130 9.73 0.00 33.78 2.41
8914 9458 2.680841 ACAGAAGTGTTTTTGCGCTGTA 59.319 40.909 9.73 0.00 33.78 2.74
8915 9459 1.472480 ACAGAAGTGTTTTTGCGCTGT 59.528 42.857 9.73 0.00 30.30 4.40
8916 9460 2.193306 ACAGAAGTGTTTTTGCGCTG 57.807 45.000 9.73 0.00 30.30 5.18
8917 9461 2.939460 AACAGAAGTGTTTTTGCGCT 57.061 40.000 9.73 0.00 45.00 5.92
8926 9470 3.322254 AGATGGACGAAGAACAGAAGTGT 59.678 43.478 0.00 0.00 39.19 3.55
8927 9471 3.919216 AGATGGACGAAGAACAGAAGTG 58.081 45.455 0.00 0.00 0.00 3.16
8928 9472 5.010933 TCTAGATGGACGAAGAACAGAAGT 58.989 41.667 0.00 0.00 0.00 3.01
8929 9473 5.568685 TCTAGATGGACGAAGAACAGAAG 57.431 43.478 0.00 0.00 0.00 2.85
8930 9474 4.142359 GCTCTAGATGGACGAAGAACAGAA 60.142 45.833 0.00 0.00 0.00 3.02
8931 9475 3.378742 GCTCTAGATGGACGAAGAACAGA 59.621 47.826 0.00 0.00 0.00 3.41
8932 9476 3.380004 AGCTCTAGATGGACGAAGAACAG 59.620 47.826 0.00 0.00 0.00 3.16
8933 9477 3.357203 AGCTCTAGATGGACGAAGAACA 58.643 45.455 0.00 0.00 0.00 3.18
8934 9478 3.630312 AGAGCTCTAGATGGACGAAGAAC 59.370 47.826 16.50 0.00 0.00 3.01
8935 9479 3.892284 AGAGCTCTAGATGGACGAAGAA 58.108 45.455 16.50 0.00 0.00 2.52
8936 9480 3.569194 AGAGCTCTAGATGGACGAAGA 57.431 47.619 16.50 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.