Multiple sequence alignment - TraesCS5D01G200800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G200800 chr5D 100.000 3834 0 0 1 3834 303762005 303758172 0.000000e+00 7081.0
1 TraesCS5D01G200800 chr5A 92.599 2824 108 45 521 3287 394183712 394180933 0.000000e+00 3964.0
2 TraesCS5D01G200800 chr5A 88.848 538 27 10 3306 3832 394180948 394180433 6.990000e-177 630.0
3 TraesCS5D01G200800 chr5B 92.219 2519 70 47 744 3215 348450399 348447960 0.000000e+00 3450.0
4 TraesCS5D01G200800 chr5B 98.000 200 4 0 549 748 348451432 348451233 7.880000e-92 348.0
5 TraesCS5D01G200800 chr6D 87.437 199 25 0 2589 2787 388538515 388538317 2.980000e-56 230.0
6 TraesCS5D01G200800 chr6D 82.803 157 27 0 1273 1429 388540037 388539881 1.440000e-29 141.0
7 TraesCS5D01G200800 chr6D 81.699 153 26 2 2508 2659 323715240 323715391 4.020000e-25 126.0
8 TraesCS5D01G200800 chr6D 93.750 48 2 1 1737 1783 388539566 388539519 1.910000e-08 71.3
9 TraesCS5D01G200800 chr6A 86.935 199 26 0 2589 2787 535152681 535152483 1.390000e-54 224.0
10 TraesCS5D01G200800 chr6A 79.605 152 31 0 2508 2659 461146925 461147076 4.050000e-20 110.0
11 TraesCS5D01G200800 chr6A 91.667 48 3 1 1737 1783 535153734 535153687 8.890000e-07 65.8
12 TraesCS5D01G200800 chr6B 85.930 199 28 0 2589 2787 581080112 581079914 3.000000e-51 213.0
13 TraesCS5D01G200800 chr6B 85.350 157 23 0 1273 1429 581081927 581081771 3.060000e-36 163.0
14 TraesCS5D01G200800 chr6B 83.761 117 17 2 2544 2659 500210534 500210419 4.050000e-20 110.0
15 TraesCS5D01G200800 chr6B 93.750 48 2 1 1737 1783 581081147 581081100 1.910000e-08 71.3
16 TraesCS5D01G200800 chr2D 85.981 107 13 2 1308 1413 112180690 112180585 3.130000e-21 113.0
17 TraesCS5D01G200800 chr7D 96.000 50 1 1 1735 1783 136014861 136014812 3.180000e-11 80.5
18 TraesCS5D01G200800 chr7B 96.000 50 1 1 1735 1783 97974193 97974144 3.180000e-11 80.5
19 TraesCS5D01G200800 chr1B 87.302 63 8 0 3693 3755 394412196 394412134 5.310000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G200800 chr5D 303758172 303762005 3833 True 7081 7081 100.0000 1 3834 1 chr5D.!!$R1 3833
1 TraesCS5D01G200800 chr5A 394180433 394183712 3279 True 2297 3964 90.7235 521 3832 2 chr5A.!!$R1 3311
2 TraesCS5D01G200800 chr5B 348447960 348451432 3472 True 1899 3450 95.1095 549 3215 2 chr5B.!!$R1 2666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 416 0.027063 GCGCGTTGTGTTACTTGTGT 59.973 50.0 8.43 0.0 0.00 3.72 F
490 491 0.548031 CTGGAAGCCTGCCCATCTTA 59.452 55.0 0.00 0.0 0.00 2.10 F
2021 2903 0.034337 GGTACGCACCTTCAACCTCA 59.966 55.0 0.00 0.0 42.11 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 2681 0.341258 ATGGGCAAGAGGAGAGGAGA 59.659 55.0 0.00 0.0 0.0 3.71 R
2179 3066 0.454452 CGTCGACGCATCTGAAGTGA 60.454 55.0 26.59 0.0 0.0 3.41 R
2863 3770 0.034896 ATAATTAGTCCAGCCCGCCG 59.965 55.0 0.00 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.783256 TTTTCCTTAACTTTTCTTTTCTTCTCG 57.217 29.630 0.00 0.00 0.00 4.04
48 49 6.956047 TCCTTAACTTTTCTTTTCTTCTCGC 58.044 36.000 0.00 0.00 0.00 5.03
49 50 5.846473 CCTTAACTTTTCTTTTCTTCTCGCG 59.154 40.000 0.00 0.00 0.00 5.87
50 51 4.877323 AACTTTTCTTTTCTTCTCGCGT 57.123 36.364 5.77 0.00 0.00 6.01
51 52 4.454403 ACTTTTCTTTTCTTCTCGCGTC 57.546 40.909 5.77 0.00 0.00 5.19
52 53 3.247886 ACTTTTCTTTTCTTCTCGCGTCC 59.752 43.478 5.77 0.00 0.00 4.79
53 54 2.814280 TTCTTTTCTTCTCGCGTCCT 57.186 45.000 5.77 0.00 0.00 3.85
54 55 3.928727 TTCTTTTCTTCTCGCGTCCTA 57.071 42.857 5.77 0.00 0.00 2.94
55 56 3.489180 TCTTTTCTTCTCGCGTCCTAG 57.511 47.619 5.77 0.00 0.00 3.02
56 57 2.818432 TCTTTTCTTCTCGCGTCCTAGT 59.182 45.455 5.77 0.00 0.00 2.57
57 58 3.255149 TCTTTTCTTCTCGCGTCCTAGTT 59.745 43.478 5.77 0.00 0.00 2.24
58 59 2.631418 TTCTTCTCGCGTCCTAGTTG 57.369 50.000 5.77 0.00 0.00 3.16
59 60 0.809385 TCTTCTCGCGTCCTAGTTGG 59.191 55.000 5.77 0.00 37.10 3.77
60 61 0.809385 CTTCTCGCGTCCTAGTTGGA 59.191 55.000 5.77 0.00 43.86 3.53
67 68 4.931292 TCCTAGTTGGATGGCCCA 57.069 55.556 0.00 0.00 44.93 5.36
74 75 3.664769 TGGATGGCCCAGATGAGG 58.335 61.111 0.00 0.00 40.82 3.86
75 76 1.308128 TGGATGGCCCAGATGAGGT 60.308 57.895 0.00 0.00 40.82 3.85
76 77 1.150081 GGATGGCCCAGATGAGGTG 59.850 63.158 0.00 0.00 34.14 4.00
77 78 1.639635 GGATGGCCCAGATGAGGTGT 61.640 60.000 0.00 0.00 34.14 4.16
78 79 0.257039 GATGGCCCAGATGAGGTGTT 59.743 55.000 0.00 0.00 0.00 3.32
79 80 0.033796 ATGGCCCAGATGAGGTGTTG 60.034 55.000 0.00 0.00 0.00 3.33
80 81 1.380302 GGCCCAGATGAGGTGTTGT 59.620 57.895 0.00 0.00 0.00 3.32
81 82 0.251341 GGCCCAGATGAGGTGTTGTT 60.251 55.000 0.00 0.00 0.00 2.83
82 83 1.620822 GCCCAGATGAGGTGTTGTTT 58.379 50.000 0.00 0.00 0.00 2.83
83 84 1.963515 GCCCAGATGAGGTGTTGTTTT 59.036 47.619 0.00 0.00 0.00 2.43
84 85 2.365293 GCCCAGATGAGGTGTTGTTTTT 59.635 45.455 0.00 0.00 0.00 1.94
85 86 3.552890 GCCCAGATGAGGTGTTGTTTTTC 60.553 47.826 0.00 0.00 0.00 2.29
86 87 3.891366 CCCAGATGAGGTGTTGTTTTTCT 59.109 43.478 0.00 0.00 0.00 2.52
87 88 4.342092 CCCAGATGAGGTGTTGTTTTTCTT 59.658 41.667 0.00 0.00 0.00 2.52
88 89 5.284079 CCAGATGAGGTGTTGTTTTTCTTG 58.716 41.667 0.00 0.00 0.00 3.02
89 90 5.163519 CCAGATGAGGTGTTGTTTTTCTTGT 60.164 40.000 0.00 0.00 0.00 3.16
90 91 5.973565 CAGATGAGGTGTTGTTTTTCTTGTC 59.026 40.000 0.00 0.00 0.00 3.18
91 92 5.888161 AGATGAGGTGTTGTTTTTCTTGTCT 59.112 36.000 0.00 0.00 0.00 3.41
92 93 5.975693 TGAGGTGTTGTTTTTCTTGTCTT 57.024 34.783 0.00 0.00 0.00 3.01
93 94 6.339587 TGAGGTGTTGTTTTTCTTGTCTTT 57.660 33.333 0.00 0.00 0.00 2.52
94 95 6.754193 TGAGGTGTTGTTTTTCTTGTCTTTT 58.246 32.000 0.00 0.00 0.00 2.27
95 96 6.866248 TGAGGTGTTGTTTTTCTTGTCTTTTC 59.134 34.615 0.00 0.00 0.00 2.29
96 97 6.754193 AGGTGTTGTTTTTCTTGTCTTTTCA 58.246 32.000 0.00 0.00 0.00 2.69
97 98 7.213678 AGGTGTTGTTTTTCTTGTCTTTTCAA 58.786 30.769 0.00 0.00 0.00 2.69
98 99 7.877612 AGGTGTTGTTTTTCTTGTCTTTTCAAT 59.122 29.630 0.00 0.00 0.00 2.57
99 100 8.168626 GGTGTTGTTTTTCTTGTCTTTTCAATC 58.831 33.333 0.00 0.00 0.00 2.67
100 101 8.925700 GTGTTGTTTTTCTTGTCTTTTCAATCT 58.074 29.630 0.00 0.00 0.00 2.40
101 102 9.487790 TGTTGTTTTTCTTGTCTTTTCAATCTT 57.512 25.926 0.00 0.00 0.00 2.40
107 108 9.500785 TTTTCTTGTCTTTTCAATCTTTTTGGT 57.499 25.926 0.00 0.00 0.00 3.67
108 109 9.500785 TTTCTTGTCTTTTCAATCTTTTTGGTT 57.499 25.926 0.00 0.00 0.00 3.67
109 110 9.500785 TTCTTGTCTTTTCAATCTTTTTGGTTT 57.499 25.926 0.00 0.00 0.00 3.27
110 111 9.500785 TCTTGTCTTTTCAATCTTTTTGGTTTT 57.499 25.926 0.00 0.00 0.00 2.43
112 113 9.890352 TTGTCTTTTCAATCTTTTTGGTTTTTG 57.110 25.926 0.00 0.00 0.00 2.44
113 114 8.020244 TGTCTTTTCAATCTTTTTGGTTTTTGC 58.980 29.630 0.00 0.00 0.00 3.68
114 115 7.216130 GTCTTTTCAATCTTTTTGGTTTTTGCG 59.784 33.333 0.00 0.00 0.00 4.85
115 116 5.476752 TTCAATCTTTTTGGTTTTTGCGG 57.523 34.783 0.00 0.00 0.00 5.69
116 117 4.508662 TCAATCTTTTTGGTTTTTGCGGT 58.491 34.783 0.00 0.00 0.00 5.68
117 118 4.938226 TCAATCTTTTTGGTTTTTGCGGTT 59.062 33.333 0.00 0.00 0.00 4.44
118 119 5.412904 TCAATCTTTTTGGTTTTTGCGGTTT 59.587 32.000 0.00 0.00 0.00 3.27
119 120 6.594159 TCAATCTTTTTGGTTTTTGCGGTTTA 59.406 30.769 0.00 0.00 0.00 2.01
120 121 6.986904 ATCTTTTTGGTTTTTGCGGTTTAA 57.013 29.167 0.00 0.00 0.00 1.52
121 122 6.166911 TCTTTTTGGTTTTTGCGGTTTAAC 57.833 33.333 0.00 0.00 0.00 2.01
122 123 4.579270 TTTTGGTTTTTGCGGTTTAACG 57.421 36.364 0.00 0.00 0.00 3.18
123 124 2.935481 TGGTTTTTGCGGTTTAACGT 57.065 40.000 0.00 0.00 35.98 3.99
124 125 2.527100 TGGTTTTTGCGGTTTAACGTG 58.473 42.857 0.00 0.00 35.98 4.49
125 126 2.094854 TGGTTTTTGCGGTTTAACGTGT 60.095 40.909 0.00 0.00 35.98 4.49
126 127 2.922387 GGTTTTTGCGGTTTAACGTGTT 59.078 40.909 0.00 0.00 35.98 3.32
127 128 3.367327 GGTTTTTGCGGTTTAACGTGTTT 59.633 39.130 0.00 0.00 35.98 2.83
128 129 4.143158 GGTTTTTGCGGTTTAACGTGTTTT 60.143 37.500 0.00 0.00 35.98 2.43
129 130 5.372445 GTTTTTGCGGTTTAACGTGTTTTT 58.628 33.333 0.00 0.00 35.98 1.94
264 265 9.950680 TCAATGAACATTTAGAAAAACAGAGAC 57.049 29.630 0.00 0.00 0.00 3.36
265 266 9.734620 CAATGAACATTTAGAAAAACAGAGACA 57.265 29.630 0.00 0.00 0.00 3.41
271 272 9.520204 ACATTTAGAAAAACAGAGACATTTGTG 57.480 29.630 0.00 0.00 0.00 3.33
272 273 9.734620 CATTTAGAAAAACAGAGACATTTGTGA 57.265 29.630 0.00 0.00 0.00 3.58
274 275 9.950680 TTTAGAAAAACAGAGACATTTGTGATC 57.049 29.630 0.00 0.00 0.00 2.92
275 276 7.572523 AGAAAAACAGAGACATTTGTGATCA 57.427 32.000 0.00 0.00 0.00 2.92
276 277 7.999679 AGAAAAACAGAGACATTTGTGATCAA 58.000 30.769 0.00 0.00 0.00 2.57
277 278 8.636213 AGAAAAACAGAGACATTTGTGATCAAT 58.364 29.630 0.00 0.00 33.32 2.57
278 279 9.252962 GAAAAACAGAGACATTTGTGATCAATT 57.747 29.630 0.00 0.00 33.32 2.32
279 280 8.807667 AAAACAGAGACATTTGTGATCAATTC 57.192 30.769 0.00 0.00 33.32 2.17
280 281 7.756395 AACAGAGACATTTGTGATCAATTCT 57.244 32.000 0.00 0.00 33.32 2.40
281 282 7.756395 ACAGAGACATTTGTGATCAATTCTT 57.244 32.000 0.00 0.00 33.32 2.52
282 283 8.174733 ACAGAGACATTTGTGATCAATTCTTT 57.825 30.769 0.00 0.00 33.32 2.52
283 284 8.636213 ACAGAGACATTTGTGATCAATTCTTTT 58.364 29.630 0.00 0.00 33.32 2.27
377 378 8.657074 AATAAATTGATGCATGATTGTTCAGG 57.343 30.769 2.46 0.00 36.73 3.86
378 379 4.665833 ATTGATGCATGATTGTTCAGGG 57.334 40.909 2.46 0.00 34.26 4.45
379 380 1.752498 TGATGCATGATTGTTCAGGGC 59.248 47.619 2.46 0.00 34.26 5.19
380 381 0.742505 ATGCATGATTGTTCAGGGCG 59.257 50.000 0.00 0.00 38.35 6.13
381 382 1.226773 GCATGATTGTTCAGGGCGC 60.227 57.895 0.00 0.00 34.26 6.53
382 383 1.660560 GCATGATTGTTCAGGGCGCT 61.661 55.000 7.64 0.00 34.26 5.92
383 384 0.099968 CATGATTGTTCAGGGCGCTG 59.900 55.000 23.98 23.98 34.73 5.18
384 385 1.033746 ATGATTGTTCAGGGCGCTGG 61.034 55.000 28.30 11.75 34.73 4.85
385 386 1.377202 GATTGTTCAGGGCGCTGGA 60.377 57.895 28.30 19.56 0.00 3.86
386 387 0.749454 GATTGTTCAGGGCGCTGGAT 60.749 55.000 28.30 17.32 0.00 3.41
387 388 0.749454 ATTGTTCAGGGCGCTGGATC 60.749 55.000 28.30 18.69 0.00 3.36
388 389 2.892425 GTTCAGGGCGCTGGATCG 60.892 66.667 28.30 4.82 0.00 3.69
405 406 4.374702 GCTGTCCAGCGCGTTGTG 62.375 66.667 21.64 12.91 45.29 3.33
406 407 2.967076 CTGTCCAGCGCGTTGTGT 60.967 61.111 21.64 0.00 0.00 3.72
407 408 2.512745 TGTCCAGCGCGTTGTGTT 60.513 55.556 21.64 0.00 0.00 3.32
408 409 1.218875 CTGTCCAGCGCGTTGTGTTA 61.219 55.000 21.64 4.45 0.00 2.41
409 410 1.203313 GTCCAGCGCGTTGTGTTAC 59.797 57.895 21.64 10.16 0.00 2.50
410 411 1.068417 TCCAGCGCGTTGTGTTACT 59.932 52.632 21.64 0.00 0.00 2.24
411 412 0.531090 TCCAGCGCGTTGTGTTACTT 60.531 50.000 21.64 0.00 0.00 2.24
412 413 0.384230 CCAGCGCGTTGTGTTACTTG 60.384 55.000 21.64 0.00 0.00 3.16
413 414 0.303493 CAGCGCGTTGTGTTACTTGT 59.697 50.000 15.40 0.00 0.00 3.16
414 415 0.303493 AGCGCGTTGTGTTACTTGTG 59.697 50.000 8.43 0.00 0.00 3.33
415 416 0.027063 GCGCGTTGTGTTACTTGTGT 59.973 50.000 8.43 0.00 0.00 3.72
416 417 1.914257 GCGCGTTGTGTTACTTGTGTC 60.914 52.381 8.43 0.00 0.00 3.67
417 418 1.332552 CGCGTTGTGTTACTTGTGTCC 60.333 52.381 0.00 0.00 0.00 4.02
418 419 1.003223 GCGTTGTGTTACTTGTGTCCC 60.003 52.381 0.00 0.00 0.00 4.46
419 420 2.281517 CGTTGTGTTACTTGTGTCCCA 58.718 47.619 0.00 0.00 0.00 4.37
420 421 2.678836 CGTTGTGTTACTTGTGTCCCAA 59.321 45.455 0.00 0.00 0.00 4.12
421 422 3.127203 CGTTGTGTTACTTGTGTCCCAAA 59.873 43.478 0.00 0.00 31.20 3.28
422 423 4.201970 CGTTGTGTTACTTGTGTCCCAAAT 60.202 41.667 0.00 0.00 31.20 2.32
423 424 4.909696 TGTGTTACTTGTGTCCCAAATG 57.090 40.909 0.00 0.00 31.20 2.32
424 425 3.634448 TGTGTTACTTGTGTCCCAAATGG 59.366 43.478 0.00 0.00 31.20 3.16
438 439 3.613494 CAAATGGGATTGGATGCAACA 57.387 42.857 0.12 0.00 0.00 3.33
439 440 3.940319 CAAATGGGATTGGATGCAACAA 58.060 40.909 0.12 9.27 0.00 2.83
440 441 4.325119 CAAATGGGATTGGATGCAACAAA 58.675 39.130 0.12 0.00 0.00 2.83
441 442 4.847990 AATGGGATTGGATGCAACAAAT 57.152 36.364 0.12 3.78 0.00 2.32
442 443 5.954153 AATGGGATTGGATGCAACAAATA 57.046 34.783 0.12 0.00 0.00 1.40
443 444 6.503560 AATGGGATTGGATGCAACAAATAT 57.496 33.333 0.12 0.00 0.00 1.28
444 445 5.279255 TGGGATTGGATGCAACAAATATG 57.721 39.130 0.12 0.00 0.00 1.78
445 446 4.715792 TGGGATTGGATGCAACAAATATGT 59.284 37.500 0.12 0.00 43.14 2.29
456 457 3.011566 ACAAATATGTTGATGGGCCGA 57.988 42.857 0.00 0.00 35.91 5.54
457 458 2.951642 ACAAATATGTTGATGGGCCGAG 59.048 45.455 0.00 0.00 35.91 4.63
458 459 1.609208 AATATGTTGATGGGCCGAGC 58.391 50.000 0.00 0.00 0.00 5.03
485 486 3.970410 CCACTGGAAGCCTGCCCA 61.970 66.667 0.00 0.00 37.60 5.36
486 487 2.357836 CACTGGAAGCCTGCCCAT 59.642 61.111 0.00 0.00 37.60 4.00
487 488 1.751927 CACTGGAAGCCTGCCCATC 60.752 63.158 0.00 0.00 37.60 3.51
488 489 1.927527 ACTGGAAGCCTGCCCATCT 60.928 57.895 0.00 0.00 37.60 2.90
489 490 1.305623 CTGGAAGCCTGCCCATCTT 59.694 57.895 0.00 0.00 0.00 2.40
490 491 0.548031 CTGGAAGCCTGCCCATCTTA 59.452 55.000 0.00 0.00 0.00 2.10
491 492 0.548031 TGGAAGCCTGCCCATCTTAG 59.452 55.000 0.00 0.00 0.00 2.18
492 493 0.548510 GGAAGCCTGCCCATCTTAGT 59.451 55.000 0.00 0.00 0.00 2.24
493 494 1.064389 GGAAGCCTGCCCATCTTAGTT 60.064 52.381 0.00 0.00 0.00 2.24
494 495 2.621668 GGAAGCCTGCCCATCTTAGTTT 60.622 50.000 0.00 0.00 0.00 2.66
495 496 2.907458 AGCCTGCCCATCTTAGTTTT 57.093 45.000 0.00 0.00 0.00 2.43
496 497 2.728007 AGCCTGCCCATCTTAGTTTTC 58.272 47.619 0.00 0.00 0.00 2.29
497 498 1.401905 GCCTGCCCATCTTAGTTTTCG 59.598 52.381 0.00 0.00 0.00 3.46
498 499 2.711542 CCTGCCCATCTTAGTTTTCGT 58.288 47.619 0.00 0.00 0.00 3.85
499 500 2.420022 CCTGCCCATCTTAGTTTTCGTG 59.580 50.000 0.00 0.00 0.00 4.35
500 501 3.334691 CTGCCCATCTTAGTTTTCGTGA 58.665 45.455 0.00 0.00 0.00 4.35
501 502 3.071479 TGCCCATCTTAGTTTTCGTGAC 58.929 45.455 0.00 0.00 0.00 3.67
502 503 3.244422 TGCCCATCTTAGTTTTCGTGACT 60.244 43.478 0.00 0.00 0.00 3.41
503 504 3.751698 GCCCATCTTAGTTTTCGTGACTT 59.248 43.478 0.00 0.00 0.00 3.01
504 505 4.378459 GCCCATCTTAGTTTTCGTGACTTG 60.378 45.833 0.00 0.00 0.00 3.16
505 506 4.994852 CCCATCTTAGTTTTCGTGACTTGA 59.005 41.667 0.00 0.00 0.00 3.02
506 507 5.120830 CCCATCTTAGTTTTCGTGACTTGAG 59.879 44.000 0.00 0.00 0.00 3.02
507 508 5.389935 CCATCTTAGTTTTCGTGACTTGAGC 60.390 44.000 0.00 0.00 0.00 4.26
508 509 4.689071 TCTTAGTTTTCGTGACTTGAGCA 58.311 39.130 0.00 0.00 0.00 4.26
509 510 4.745125 TCTTAGTTTTCGTGACTTGAGCAG 59.255 41.667 0.00 0.00 0.00 4.24
510 511 3.179443 AGTTTTCGTGACTTGAGCAGA 57.821 42.857 0.00 0.00 0.00 4.26
511 512 3.531538 AGTTTTCGTGACTTGAGCAGAA 58.468 40.909 0.00 0.00 0.00 3.02
512 513 3.938963 AGTTTTCGTGACTTGAGCAGAAA 59.061 39.130 0.00 0.00 0.00 2.52
513 514 3.944422 TTTCGTGACTTGAGCAGAAAC 57.056 42.857 0.00 0.00 0.00 2.78
514 515 2.595124 TCGTGACTTGAGCAGAAACA 57.405 45.000 0.00 0.00 0.00 2.83
515 516 2.899976 TCGTGACTTGAGCAGAAACAA 58.100 42.857 0.00 0.00 0.00 2.83
516 517 3.266636 TCGTGACTTGAGCAGAAACAAA 58.733 40.909 0.00 0.00 0.00 2.83
517 518 3.687212 TCGTGACTTGAGCAGAAACAAAA 59.313 39.130 0.00 0.00 0.00 2.44
518 519 3.786048 CGTGACTTGAGCAGAAACAAAAC 59.214 43.478 0.00 0.00 0.00 2.43
519 520 3.786048 GTGACTTGAGCAGAAACAAAACG 59.214 43.478 0.00 0.00 0.00 3.60
527 528 3.126343 AGCAGAAACAAAACGAAACGAGT 59.874 39.130 0.00 0.00 0.00 4.18
613 622 1.000896 ATCACAGGGGAAAAGGCCG 60.001 57.895 0.00 0.00 0.00 6.13
871 1719 3.119316 TCATTTCCTCTTCACTCTCGCTC 60.119 47.826 0.00 0.00 0.00 5.03
887 1735 1.172175 GCTCCTCCTTTTCTGCCTTG 58.828 55.000 0.00 0.00 0.00 3.61
974 1825 1.548269 CTGTCCCTCGAAGCTTCTTCT 59.452 52.381 23.50 0.00 0.00 2.85
975 1826 1.971357 TGTCCCTCGAAGCTTCTTCTT 59.029 47.619 23.50 0.00 0.00 2.52
976 1827 2.028930 TGTCCCTCGAAGCTTCTTCTTC 60.029 50.000 23.50 10.30 39.17 2.87
990 1841 5.744594 GCTTCTTCTTCTTCTCCTTGGACTT 60.745 44.000 0.00 0.00 0.00 3.01
1086 1937 2.359975 CCTGGTTCGCTGTTCCCC 60.360 66.667 0.00 0.00 0.00 4.81
1444 2295 0.984230 CCTGTTCACCCTGCTTCCTA 59.016 55.000 0.00 0.00 0.00 2.94
1463 2315 8.911965 GCTTCCTACAGTAGTTTTATAGTACCT 58.088 37.037 6.84 0.00 33.82 3.08
1465 2317 9.759473 TTCCTACAGTAGTTTTATAGTACCTGT 57.241 33.333 6.84 0.00 33.82 4.00
1512 2371 6.793203 TGCGAACACGTTATTAATTTTCTGAC 59.207 34.615 0.00 0.00 0.00 3.51
1655 2524 3.867783 CGTCCACCACCACCACCA 61.868 66.667 0.00 0.00 0.00 4.17
1658 2527 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1706 2575 2.233355 CGATGTGTGCGTGTTCAATTC 58.767 47.619 0.00 0.00 0.00 2.17
1707 2576 2.096268 CGATGTGTGCGTGTTCAATTCT 60.096 45.455 0.00 0.00 0.00 2.40
1812 2681 5.244626 CCTCAAAGTCCAAGGTGAATTGATT 59.755 40.000 0.00 0.00 31.55 2.57
1825 2694 5.104569 GGTGAATTGATTCTCCTCTCCTCTT 60.105 44.000 14.49 0.00 43.54 2.85
1838 2707 3.237746 TCTCCTCTTGCCCATCATCTAG 58.762 50.000 0.00 0.00 0.00 2.43
1839 2708 1.696336 TCCTCTTGCCCATCATCTAGC 59.304 52.381 0.00 0.00 0.00 3.42
1840 2709 1.698532 CCTCTTGCCCATCATCTAGCT 59.301 52.381 0.00 0.00 0.00 3.32
1841 2710 2.902486 CCTCTTGCCCATCATCTAGCTA 59.098 50.000 0.00 0.00 0.00 3.32
1842 2711 3.055963 CCTCTTGCCCATCATCTAGCTAG 60.056 52.174 15.01 15.01 0.00 3.42
1843 2712 2.301296 TCTTGCCCATCATCTAGCTAGC 59.699 50.000 16.35 6.62 0.00 3.42
1845 2714 0.108424 GCCCATCATCTAGCTAGCCG 60.108 60.000 16.35 9.20 0.00 5.52
1846 2715 0.108424 CCCATCATCTAGCTAGCCGC 60.108 60.000 16.35 0.00 39.57 6.53
1865 2734 3.146726 TACCGCTAGCATGGTCGCC 62.147 63.158 16.52 0.00 39.70 5.54
1875 2748 0.603065 CATGGTCGCCCGATCTATCA 59.397 55.000 2.42 0.00 0.00 2.15
1907 2784 2.799126 TTGTGGGCACGAATATTCCT 57.201 45.000 9.87 0.00 0.00 3.36
1972 2850 2.808543 CAAAGGAGTTCTCTTCCAACCG 59.191 50.000 0.00 0.00 0.00 4.44
2021 2903 0.034337 GGTACGCACCTTCAACCTCA 59.966 55.000 0.00 0.00 42.11 3.86
2042 2924 3.197790 CCGCCCACTCATTCGCAG 61.198 66.667 0.00 0.00 0.00 5.18
2176 3063 1.732941 ACAACAAGTTCTGCGTGTCA 58.267 45.000 0.00 0.00 38.82 3.58
2179 3066 2.024176 ACAAGTTCTGCGTGTCAGTT 57.976 45.000 0.00 0.00 43.32 3.16
2411 3318 4.602340 ACTTAACAAGTGACTGATCGGT 57.398 40.909 6.97 6.97 41.01 4.69
2425 3332 3.469739 TGATCGGTGTCAATGATGATGG 58.530 45.455 0.00 0.00 38.01 3.51
2426 3333 3.118298 TGATCGGTGTCAATGATGATGGT 60.118 43.478 0.00 0.00 38.01 3.55
2427 3334 2.631267 TCGGTGTCAATGATGATGGTG 58.369 47.619 0.00 0.00 38.01 4.17
2843 3750 3.047718 GACGCCTGATCGGACGACA 62.048 63.158 17.64 0.00 36.55 4.35
2927 3841 3.199880 AGTTAATGAATCCCCTGCTCG 57.800 47.619 0.00 0.00 0.00 5.03
3022 3936 0.248825 TTGTTGCGCCACATGTTGTC 60.249 50.000 15.73 0.00 0.00 3.18
3142 4056 8.477419 AACCATGGAATAAAGAAAGAGAAACA 57.523 30.769 21.47 0.00 0.00 2.83
3236 4164 1.950909 TCGATGTTTTGCCTCCGTTTT 59.049 42.857 0.00 0.00 0.00 2.43
3287 4220 9.678941 CTACAAGATCATGTTATTCGTAAGCTA 57.321 33.333 9.14 0.00 34.75 3.32
3288 4221 8.581057 ACAAGATCATGTTATTCGTAAGCTAG 57.419 34.615 0.00 0.00 37.18 3.42
3289 4222 7.169982 ACAAGATCATGTTATTCGTAAGCTAGC 59.830 37.037 6.62 6.62 37.18 3.42
3290 4223 6.159988 AGATCATGTTATTCGTAAGCTAGCC 58.840 40.000 12.13 0.00 37.18 3.93
3291 4224 4.628074 TCATGTTATTCGTAAGCTAGCCC 58.372 43.478 12.13 0.00 37.18 5.19
3293 4226 2.223876 TGTTATTCGTAAGCTAGCCCGG 60.224 50.000 12.13 0.00 37.18 5.73
3294 4227 1.696063 TATTCGTAAGCTAGCCCGGT 58.304 50.000 12.13 7.02 37.18 5.28
3295 4228 0.828677 ATTCGTAAGCTAGCCCGGTT 59.171 50.000 12.13 1.15 37.18 4.44
3296 4229 0.174162 TTCGTAAGCTAGCCCGGTTC 59.826 55.000 12.13 0.00 37.18 3.62
3297 4230 0.966875 TCGTAAGCTAGCCCGGTTCA 60.967 55.000 12.13 0.00 37.18 3.18
3298 4231 0.108520 CGTAAGCTAGCCCGGTTCAA 60.109 55.000 12.13 0.00 0.00 2.69
3299 4232 1.673626 CGTAAGCTAGCCCGGTTCAAA 60.674 52.381 12.13 0.00 0.00 2.69
3300 4233 2.429478 GTAAGCTAGCCCGGTTCAAAA 58.571 47.619 12.13 0.00 0.00 2.44
3301 4234 2.215942 AAGCTAGCCCGGTTCAAAAT 57.784 45.000 12.13 0.00 0.00 1.82
3302 4235 3.359695 AAGCTAGCCCGGTTCAAAATA 57.640 42.857 12.13 0.00 0.00 1.40
3303 4236 3.359695 AGCTAGCCCGGTTCAAAATAA 57.640 42.857 12.13 0.00 0.00 1.40
3304 4237 3.692690 AGCTAGCCCGGTTCAAAATAAA 58.307 40.909 12.13 0.00 0.00 1.40
3305 4238 4.083565 AGCTAGCCCGGTTCAAAATAAAA 58.916 39.130 12.13 0.00 0.00 1.52
3306 4239 4.709886 AGCTAGCCCGGTTCAAAATAAAAT 59.290 37.500 12.13 0.00 0.00 1.82
3307 4240 4.803613 GCTAGCCCGGTTCAAAATAAAATG 59.196 41.667 2.29 0.00 0.00 2.32
3308 4241 4.882842 AGCCCGGTTCAAAATAAAATGT 57.117 36.364 0.00 0.00 0.00 2.71
3309 4242 5.222079 AGCCCGGTTCAAAATAAAATGTT 57.778 34.783 0.00 0.00 0.00 2.71
3310 4243 6.347859 AGCCCGGTTCAAAATAAAATGTTA 57.652 33.333 0.00 0.00 0.00 2.41
3311 4244 6.941857 AGCCCGGTTCAAAATAAAATGTTAT 58.058 32.000 0.00 0.00 0.00 1.89
3312 4245 7.390823 AGCCCGGTTCAAAATAAAATGTTATT 58.609 30.769 0.00 0.00 40.88 1.40
3313 4246 7.547722 AGCCCGGTTCAAAATAAAATGTTATTC 59.452 33.333 0.00 0.00 38.69 1.75
3314 4247 7.463515 GCCCGGTTCAAAATAAAATGTTATTCG 60.464 37.037 0.00 0.66 38.69 3.34
3315 4248 7.542824 CCCGGTTCAAAATAAAATGTTATTCGT 59.457 33.333 0.00 0.00 38.69 3.85
3316 4249 9.557338 CCGGTTCAAAATAAAATGTTATTCGTA 57.443 29.630 1.24 0.00 38.69 3.43
3357 4290 2.278026 AATTCGATTTTTCTGGCCGC 57.722 45.000 0.00 0.00 0.00 6.53
3407 4340 5.898120 TGTCTTATTTCATCCTTTTCCCCA 58.102 37.500 0.00 0.00 0.00 4.96
3420 4354 0.898320 TTCCCCAGCTTCTTCTCGAG 59.102 55.000 5.93 5.93 0.00 4.04
3421 4355 0.039764 TCCCCAGCTTCTTCTCGAGA 59.960 55.000 12.08 12.08 0.00 4.04
3422 4356 1.118838 CCCCAGCTTCTTCTCGAGAT 58.881 55.000 17.44 0.00 33.49 2.75
3516 4454 2.048222 TTTCTCACTGCCTCGCCG 60.048 61.111 0.00 0.00 0.00 6.46
3542 4480 3.891400 CCGCCACATCCGCCAATG 61.891 66.667 0.00 0.00 0.00 2.82
3543 4481 3.133464 CGCCACATCCGCCAATGT 61.133 61.111 0.00 0.00 40.49 2.71
3547 4485 3.133464 ACATCCGCCAATGTGCCG 61.133 61.111 0.00 0.00 38.43 5.69
3548 4486 4.557605 CATCCGCCAATGTGCCGC 62.558 66.667 0.00 0.00 0.00 6.53
3549 4487 4.802051 ATCCGCCAATGTGCCGCT 62.802 61.111 0.00 0.00 0.00 5.52
3576 4514 0.106894 GCCATTCCTCTAACCCCGAG 59.893 60.000 0.00 0.00 0.00 4.63
3616 4556 2.227968 CTGCGCGCACCTGAACTAAC 62.228 60.000 33.09 0.00 0.00 2.34
3685 4629 2.125106 GCGATGCCCCGTCTCTTT 60.125 61.111 0.00 0.00 0.00 2.52
3734 4678 2.102438 CGAGCTGCGAATTCAGGCA 61.102 57.895 6.22 7.03 44.57 4.75
3785 4729 5.464722 CAGATCTATGTGTAGTGCATCCAAC 59.535 44.000 0.00 0.00 0.00 3.77
3793 4737 2.779755 AGTGCATCCAACATTCCGTA 57.220 45.000 0.00 0.00 0.00 4.02
3794 4738 3.066291 AGTGCATCCAACATTCCGTAA 57.934 42.857 0.00 0.00 0.00 3.18
3796 4740 2.088423 TGCATCCAACATTCCGTAACC 58.912 47.619 0.00 0.00 0.00 2.85
3797 4741 1.404035 GCATCCAACATTCCGTAACCC 59.596 52.381 0.00 0.00 0.00 4.11
3798 4742 2.717390 CATCCAACATTCCGTAACCCA 58.283 47.619 0.00 0.00 0.00 4.51
3799 4743 2.483014 TCCAACATTCCGTAACCCAG 57.517 50.000 0.00 0.00 0.00 4.45
3809 4753 3.766691 TAACCCAGCTCGGACGGC 61.767 66.667 3.62 0.00 36.56 5.68
3832 4776 3.598678 CGTGAACTGCATGCAGATG 57.401 52.632 45.50 28.26 46.30 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.783256 CGAGAAGAAAAGAAAAGTTAAGGAAAA 57.217 29.630 0.00 0.00 0.00 2.29
22 23 7.913821 GCGAGAAGAAAAGAAAAGTTAAGGAAA 59.086 33.333 0.00 0.00 0.00 3.13
23 24 7.415229 GCGAGAAGAAAAGAAAAGTTAAGGAA 58.585 34.615 0.00 0.00 0.00 3.36
24 25 6.292703 CGCGAGAAGAAAAGAAAAGTTAAGGA 60.293 38.462 0.00 0.00 0.00 3.36
25 26 5.846473 CGCGAGAAGAAAAGAAAAGTTAAGG 59.154 40.000 0.00 0.00 0.00 2.69
26 27 6.419771 ACGCGAGAAGAAAAGAAAAGTTAAG 58.580 36.000 15.93 0.00 0.00 1.85
27 28 6.354039 ACGCGAGAAGAAAAGAAAAGTTAA 57.646 33.333 15.93 0.00 0.00 2.01
28 29 5.050567 GGACGCGAGAAGAAAAGAAAAGTTA 60.051 40.000 15.93 0.00 0.00 2.24
29 30 4.260661 GGACGCGAGAAGAAAAGAAAAGTT 60.261 41.667 15.93 0.00 0.00 2.66
30 31 3.247886 GGACGCGAGAAGAAAAGAAAAGT 59.752 43.478 15.93 0.00 0.00 2.66
31 32 3.495001 AGGACGCGAGAAGAAAAGAAAAG 59.505 43.478 15.93 0.00 0.00 2.27
32 33 3.463944 AGGACGCGAGAAGAAAAGAAAA 58.536 40.909 15.93 0.00 0.00 2.29
33 34 3.107642 AGGACGCGAGAAGAAAAGAAA 57.892 42.857 15.93 0.00 0.00 2.52
34 35 2.814280 AGGACGCGAGAAGAAAAGAA 57.186 45.000 15.93 0.00 0.00 2.52
35 36 2.818432 ACTAGGACGCGAGAAGAAAAGA 59.182 45.455 15.93 0.00 0.00 2.52
36 37 3.219052 ACTAGGACGCGAGAAGAAAAG 57.781 47.619 15.93 1.24 0.00 2.27
37 38 3.314553 CAACTAGGACGCGAGAAGAAAA 58.685 45.455 15.93 0.00 0.00 2.29
38 39 2.352421 CCAACTAGGACGCGAGAAGAAA 60.352 50.000 15.93 0.00 41.22 2.52
39 40 1.201647 CCAACTAGGACGCGAGAAGAA 59.798 52.381 15.93 0.00 41.22 2.52
40 41 0.809385 CCAACTAGGACGCGAGAAGA 59.191 55.000 15.93 0.00 41.22 2.87
41 42 0.809385 TCCAACTAGGACGCGAGAAG 59.191 55.000 15.93 7.06 43.07 2.85
42 43 2.951269 TCCAACTAGGACGCGAGAA 58.049 52.632 15.93 0.00 43.07 2.87
43 44 4.728409 TCCAACTAGGACGCGAGA 57.272 55.556 15.93 0.00 43.07 4.04
51 52 1.143813 ATCTGGGCCATCCAACTAGG 58.856 55.000 6.72 0.00 46.51 3.02
52 53 1.770658 TCATCTGGGCCATCCAACTAG 59.229 52.381 6.72 0.00 46.51 2.57
53 54 1.770658 CTCATCTGGGCCATCCAACTA 59.229 52.381 6.72 0.00 46.51 2.24
54 55 0.549950 CTCATCTGGGCCATCCAACT 59.450 55.000 6.72 0.00 46.51 3.16
55 56 0.466922 CCTCATCTGGGCCATCCAAC 60.467 60.000 6.72 0.00 46.51 3.77
56 57 0.920763 ACCTCATCTGGGCCATCCAA 60.921 55.000 6.72 0.00 46.51 3.53
57 58 1.308128 ACCTCATCTGGGCCATCCA 60.308 57.895 6.72 0.00 44.79 3.41
58 59 1.150081 CACCTCATCTGGGCCATCC 59.850 63.158 6.72 0.00 0.00 3.51
59 60 0.257039 AACACCTCATCTGGGCCATC 59.743 55.000 6.72 0.00 0.00 3.51
60 61 0.033796 CAACACCTCATCTGGGCCAT 60.034 55.000 6.72 0.00 0.00 4.40
61 62 1.379916 CAACACCTCATCTGGGCCA 59.620 57.895 5.85 5.85 0.00 5.36
62 63 0.251341 AACAACACCTCATCTGGGCC 60.251 55.000 0.00 0.00 0.00 5.80
63 64 1.620822 AAACAACACCTCATCTGGGC 58.379 50.000 0.00 0.00 0.00 5.36
64 65 3.891366 AGAAAAACAACACCTCATCTGGG 59.109 43.478 0.00 0.00 0.00 4.45
65 66 5.163519 ACAAGAAAAACAACACCTCATCTGG 60.164 40.000 0.00 0.00 0.00 3.86
66 67 5.894807 ACAAGAAAAACAACACCTCATCTG 58.105 37.500 0.00 0.00 0.00 2.90
67 68 5.888161 AGACAAGAAAAACAACACCTCATCT 59.112 36.000 0.00 0.00 0.00 2.90
68 69 6.136541 AGACAAGAAAAACAACACCTCATC 57.863 37.500 0.00 0.00 0.00 2.92
69 70 6.530019 AAGACAAGAAAAACAACACCTCAT 57.470 33.333 0.00 0.00 0.00 2.90
70 71 5.975693 AAGACAAGAAAAACAACACCTCA 57.024 34.783 0.00 0.00 0.00 3.86
71 72 6.866248 TGAAAAGACAAGAAAAACAACACCTC 59.134 34.615 0.00 0.00 0.00 3.85
72 73 6.754193 TGAAAAGACAAGAAAAACAACACCT 58.246 32.000 0.00 0.00 0.00 4.00
73 74 7.414814 TTGAAAAGACAAGAAAAACAACACC 57.585 32.000 0.00 0.00 0.00 4.16
74 75 8.925700 AGATTGAAAAGACAAGAAAAACAACAC 58.074 29.630 0.00 0.00 33.22 3.32
75 76 9.487790 AAGATTGAAAAGACAAGAAAAACAACA 57.512 25.926 0.00 0.00 33.22 3.33
81 82 9.500785 ACCAAAAAGATTGAAAAGACAAGAAAA 57.499 25.926 0.00 0.00 33.22 2.29
82 83 9.500785 AACCAAAAAGATTGAAAAGACAAGAAA 57.499 25.926 0.00 0.00 33.22 2.52
83 84 9.500785 AAACCAAAAAGATTGAAAAGACAAGAA 57.499 25.926 0.00 0.00 33.22 2.52
84 85 9.500785 AAAACCAAAAAGATTGAAAAGACAAGA 57.499 25.926 0.00 0.00 33.22 3.02
86 87 9.890352 CAAAAACCAAAAAGATTGAAAAGACAA 57.110 25.926 0.00 0.00 0.00 3.18
87 88 8.020244 GCAAAAACCAAAAAGATTGAAAAGACA 58.980 29.630 0.00 0.00 0.00 3.41
88 89 7.216130 CGCAAAAACCAAAAAGATTGAAAAGAC 59.784 33.333 0.00 0.00 0.00 3.01
89 90 7.239972 CGCAAAAACCAAAAAGATTGAAAAGA 58.760 30.769 0.00 0.00 0.00 2.52
90 91 6.468637 CCGCAAAAACCAAAAAGATTGAAAAG 59.531 34.615 0.00 0.00 0.00 2.27
91 92 6.072452 ACCGCAAAAACCAAAAAGATTGAAAA 60.072 30.769 0.00 0.00 0.00 2.29
92 93 5.412904 ACCGCAAAAACCAAAAAGATTGAAA 59.587 32.000 0.00 0.00 0.00 2.69
93 94 4.938226 ACCGCAAAAACCAAAAAGATTGAA 59.062 33.333 0.00 0.00 0.00 2.69
94 95 4.508662 ACCGCAAAAACCAAAAAGATTGA 58.491 34.783 0.00 0.00 0.00 2.57
95 96 4.873768 ACCGCAAAAACCAAAAAGATTG 57.126 36.364 0.00 0.00 0.00 2.67
96 97 5.888691 AAACCGCAAAAACCAAAAAGATT 57.111 30.435 0.00 0.00 0.00 2.40
97 98 6.455780 CGTTAAACCGCAAAAACCAAAAAGAT 60.456 34.615 0.00 0.00 0.00 2.40
98 99 5.163982 CGTTAAACCGCAAAAACCAAAAAGA 60.164 36.000 0.00 0.00 0.00 2.52
99 100 5.016359 CGTTAAACCGCAAAAACCAAAAAG 58.984 37.500 0.00 0.00 0.00 2.27
100 101 4.450080 ACGTTAAACCGCAAAAACCAAAAA 59.550 33.333 0.00 0.00 0.00 1.94
101 102 3.992427 ACGTTAAACCGCAAAAACCAAAA 59.008 34.783 0.00 0.00 0.00 2.44
102 103 3.367025 CACGTTAAACCGCAAAAACCAAA 59.633 39.130 0.00 0.00 0.00 3.28
103 104 2.921754 CACGTTAAACCGCAAAAACCAA 59.078 40.909 0.00 0.00 0.00 3.67
104 105 2.094854 ACACGTTAAACCGCAAAAACCA 60.095 40.909 0.00 0.00 0.00 3.67
105 106 2.528125 ACACGTTAAACCGCAAAAACC 58.472 42.857 0.00 0.00 0.00 3.27
106 107 4.565090 AAACACGTTAAACCGCAAAAAC 57.435 36.364 0.00 0.00 0.00 2.43
107 108 5.587033 AAAAACACGTTAAACCGCAAAAA 57.413 30.435 0.00 0.00 0.00 1.94
238 239 9.950680 GTCTCTGTTTTTCTAAATGTTCATTGA 57.049 29.630 0.00 0.00 0.00 2.57
239 240 9.734620 TGTCTCTGTTTTTCTAAATGTTCATTG 57.265 29.630 0.00 0.00 0.00 2.82
245 246 9.520204 CACAAATGTCTCTGTTTTTCTAAATGT 57.480 29.630 0.00 0.00 0.00 2.71
246 247 9.734620 TCACAAATGTCTCTGTTTTTCTAAATG 57.265 29.630 0.00 0.00 0.00 2.32
248 249 9.950680 GATCACAAATGTCTCTGTTTTTCTAAA 57.049 29.630 0.00 0.00 0.00 1.85
249 250 9.119418 TGATCACAAATGTCTCTGTTTTTCTAA 57.881 29.630 0.00 0.00 0.00 2.10
250 251 8.675705 TGATCACAAATGTCTCTGTTTTTCTA 57.324 30.769 0.00 0.00 0.00 2.10
251 252 7.572523 TGATCACAAATGTCTCTGTTTTTCT 57.427 32.000 0.00 0.00 0.00 2.52
252 253 8.807667 ATTGATCACAAATGTCTCTGTTTTTC 57.192 30.769 0.00 0.00 39.54 2.29
253 254 9.252962 GAATTGATCACAAATGTCTCTGTTTTT 57.747 29.630 0.00 0.00 39.54 1.94
254 255 8.636213 AGAATTGATCACAAATGTCTCTGTTTT 58.364 29.630 0.00 0.00 39.54 2.43
255 256 8.174733 AGAATTGATCACAAATGTCTCTGTTT 57.825 30.769 0.00 0.00 39.54 2.83
256 257 7.756395 AGAATTGATCACAAATGTCTCTGTT 57.244 32.000 0.00 0.00 39.54 3.16
257 258 7.756395 AAGAATTGATCACAAATGTCTCTGT 57.244 32.000 0.00 0.00 39.54 3.41
351 352 9.104965 CCTGAACAATCATGCATCAATTTATTT 57.895 29.630 0.00 0.00 34.37 1.40
352 353 7.713507 CCCTGAACAATCATGCATCAATTTATT 59.286 33.333 0.00 0.00 34.37 1.40
353 354 7.214381 CCCTGAACAATCATGCATCAATTTAT 58.786 34.615 0.00 0.00 34.37 1.40
354 355 6.575267 CCCTGAACAATCATGCATCAATTTA 58.425 36.000 0.00 0.00 34.37 1.40
355 356 5.424757 CCCTGAACAATCATGCATCAATTT 58.575 37.500 0.00 0.00 34.37 1.82
356 357 4.682320 GCCCTGAACAATCATGCATCAATT 60.682 41.667 0.00 0.00 34.84 2.32
357 358 3.181469 GCCCTGAACAATCATGCATCAAT 60.181 43.478 0.00 0.00 34.84 2.57
358 359 2.166870 GCCCTGAACAATCATGCATCAA 59.833 45.455 0.00 0.00 34.84 2.57
359 360 1.752498 GCCCTGAACAATCATGCATCA 59.248 47.619 0.00 0.00 34.84 3.07
360 361 1.268896 CGCCCTGAACAATCATGCATC 60.269 52.381 0.00 0.00 34.56 3.91
361 362 0.742505 CGCCCTGAACAATCATGCAT 59.257 50.000 0.00 0.00 34.56 3.96
362 363 1.936436 GCGCCCTGAACAATCATGCA 61.936 55.000 0.00 0.00 34.56 3.96
363 364 1.226773 GCGCCCTGAACAATCATGC 60.227 57.895 0.00 0.00 34.37 4.06
364 365 0.099968 CAGCGCCCTGAACAATCATG 59.900 55.000 2.29 0.00 41.77 3.07
365 366 1.033746 CCAGCGCCCTGAACAATCAT 61.034 55.000 2.29 0.00 41.77 2.45
366 367 1.675310 CCAGCGCCCTGAACAATCA 60.675 57.895 2.29 0.00 41.77 2.57
367 368 0.749454 ATCCAGCGCCCTGAACAATC 60.749 55.000 2.29 0.00 41.77 2.67
368 369 0.749454 GATCCAGCGCCCTGAACAAT 60.749 55.000 2.29 0.00 41.77 2.71
369 370 1.377202 GATCCAGCGCCCTGAACAA 60.377 57.895 2.29 0.00 41.77 2.83
370 371 2.268920 GATCCAGCGCCCTGAACA 59.731 61.111 2.29 0.00 41.77 3.18
371 372 2.892425 CGATCCAGCGCCCTGAAC 60.892 66.667 2.29 0.00 41.77 3.18
389 390 1.218875 TAACACAACGCGCTGGACAG 61.219 55.000 14.82 3.44 0.00 3.51
390 391 1.227292 TAACACAACGCGCTGGACA 60.227 52.632 14.82 0.00 0.00 4.02
391 392 1.203313 GTAACACAACGCGCTGGAC 59.797 57.895 14.82 2.69 0.00 4.02
392 393 0.531090 AAGTAACACAACGCGCTGGA 60.531 50.000 14.82 0.00 0.00 3.86
393 394 0.384230 CAAGTAACACAACGCGCTGG 60.384 55.000 14.82 5.50 0.00 4.85
394 395 0.303493 ACAAGTAACACAACGCGCTG 59.697 50.000 5.73 7.11 0.00 5.18
395 396 0.303493 CACAAGTAACACAACGCGCT 59.697 50.000 5.73 0.00 0.00 5.92
396 397 0.027063 ACACAAGTAACACAACGCGC 59.973 50.000 5.73 0.00 0.00 6.86
397 398 1.332552 GGACACAAGTAACACAACGCG 60.333 52.381 3.53 3.53 0.00 6.01
398 399 1.003223 GGGACACAAGTAACACAACGC 60.003 52.381 0.00 0.00 0.00 4.84
399 400 2.281517 TGGGACACAAGTAACACAACG 58.718 47.619 0.00 0.00 0.00 4.10
400 401 4.705337 TTTGGGACACAAGTAACACAAC 57.295 40.909 0.00 0.00 40.82 3.32
401 402 4.098654 CCATTTGGGACACAAGTAACACAA 59.901 41.667 0.00 0.00 40.82 3.33
402 403 3.634448 CCATTTGGGACACAAGTAACACA 59.366 43.478 0.00 0.00 40.82 3.72
403 404 4.237349 CCATTTGGGACACAAGTAACAC 57.763 45.455 0.00 0.00 40.82 3.32
417 418 2.236644 TGTTGCATCCAATCCCATTTGG 59.763 45.455 0.00 0.00 46.28 3.28
418 419 3.613494 TGTTGCATCCAATCCCATTTG 57.387 42.857 0.00 0.00 32.75 2.32
419 420 4.637387 TTTGTTGCATCCAATCCCATTT 57.363 36.364 0.00 0.00 32.75 2.32
420 421 4.847990 ATTTGTTGCATCCAATCCCATT 57.152 36.364 0.00 0.00 32.75 3.16
421 422 5.367352 ACATATTTGTTGCATCCAATCCCAT 59.633 36.000 0.00 0.00 32.75 4.00
422 423 4.715792 ACATATTTGTTGCATCCAATCCCA 59.284 37.500 0.00 0.00 32.75 4.37
423 424 5.280654 ACATATTTGTTGCATCCAATCCC 57.719 39.130 0.00 0.00 32.75 3.85
436 437 2.951642 CTCGGCCCATCAACATATTTGT 59.048 45.455 0.00 0.00 37.82 2.83
437 438 2.287788 GCTCGGCCCATCAACATATTTG 60.288 50.000 0.00 0.00 0.00 2.32
438 439 1.956477 GCTCGGCCCATCAACATATTT 59.044 47.619 0.00 0.00 0.00 1.40
439 440 1.609208 GCTCGGCCCATCAACATATT 58.391 50.000 0.00 0.00 0.00 1.28
440 441 0.250901 GGCTCGGCCCATCAACATAT 60.251 55.000 0.00 0.00 44.06 1.78
441 442 1.148273 GGCTCGGCCCATCAACATA 59.852 57.895 0.00 0.00 44.06 2.29
442 443 2.124151 GGCTCGGCCCATCAACAT 60.124 61.111 0.00 0.00 44.06 2.71
468 469 3.292481 ATGGGCAGGCTTCCAGTGG 62.292 63.158 5.34 1.40 36.38 4.00
469 470 1.751927 GATGGGCAGGCTTCCAGTG 60.752 63.158 5.34 0.00 36.38 3.66
470 471 1.504275 AAGATGGGCAGGCTTCCAGT 61.504 55.000 5.34 0.00 36.38 4.00
471 472 0.548031 TAAGATGGGCAGGCTTCCAG 59.452 55.000 5.34 0.00 36.38 3.86
472 473 0.548031 CTAAGATGGGCAGGCTTCCA 59.452 55.000 5.34 7.17 37.46 3.53
473 474 0.548510 ACTAAGATGGGCAGGCTTCC 59.451 55.000 0.00 0.00 0.00 3.46
474 475 2.426842 AACTAAGATGGGCAGGCTTC 57.573 50.000 0.00 0.00 0.00 3.86
475 476 2.907458 AAACTAAGATGGGCAGGCTT 57.093 45.000 0.00 0.00 0.00 4.35
476 477 2.728007 GAAAACTAAGATGGGCAGGCT 58.272 47.619 0.00 0.00 0.00 4.58
477 478 1.401905 CGAAAACTAAGATGGGCAGGC 59.598 52.381 0.00 0.00 0.00 4.85
478 479 2.420022 CACGAAAACTAAGATGGGCAGG 59.580 50.000 0.00 0.00 0.00 4.85
479 480 3.125316 GTCACGAAAACTAAGATGGGCAG 59.875 47.826 0.00 0.00 0.00 4.85
480 481 3.071479 GTCACGAAAACTAAGATGGGCA 58.929 45.455 0.00 0.00 0.00 5.36
481 482 3.335579 AGTCACGAAAACTAAGATGGGC 58.664 45.455 0.00 0.00 0.00 5.36
482 483 4.994852 TCAAGTCACGAAAACTAAGATGGG 59.005 41.667 0.00 0.00 0.00 4.00
483 484 5.389935 GCTCAAGTCACGAAAACTAAGATGG 60.390 44.000 0.00 0.00 0.00 3.51
484 485 5.177511 TGCTCAAGTCACGAAAACTAAGATG 59.822 40.000 0.00 0.00 0.00 2.90
485 486 5.297547 TGCTCAAGTCACGAAAACTAAGAT 58.702 37.500 0.00 0.00 0.00 2.40
486 487 4.689071 TGCTCAAGTCACGAAAACTAAGA 58.311 39.130 0.00 0.00 0.00 2.10
487 488 4.745125 TCTGCTCAAGTCACGAAAACTAAG 59.255 41.667 0.00 0.00 0.00 2.18
488 489 4.689071 TCTGCTCAAGTCACGAAAACTAA 58.311 39.130 0.00 0.00 0.00 2.24
489 490 4.316205 TCTGCTCAAGTCACGAAAACTA 57.684 40.909 0.00 0.00 0.00 2.24
490 491 3.179443 TCTGCTCAAGTCACGAAAACT 57.821 42.857 0.00 0.00 0.00 2.66
491 492 3.944422 TTCTGCTCAAGTCACGAAAAC 57.056 42.857 0.00 0.00 0.00 2.43
492 493 3.687212 TGTTTCTGCTCAAGTCACGAAAA 59.313 39.130 0.00 0.00 0.00 2.29
493 494 3.266636 TGTTTCTGCTCAAGTCACGAAA 58.733 40.909 0.00 0.00 0.00 3.46
494 495 2.899976 TGTTTCTGCTCAAGTCACGAA 58.100 42.857 0.00 0.00 0.00 3.85
495 496 2.595124 TGTTTCTGCTCAAGTCACGA 57.405 45.000 0.00 0.00 0.00 4.35
496 497 3.673746 TTTGTTTCTGCTCAAGTCACG 57.326 42.857 0.00 0.00 0.00 4.35
497 498 3.786048 CGTTTTGTTTCTGCTCAAGTCAC 59.214 43.478 0.00 0.00 0.00 3.67
498 499 3.687212 TCGTTTTGTTTCTGCTCAAGTCA 59.313 39.130 0.00 0.00 0.00 3.41
499 500 4.273005 TCGTTTTGTTTCTGCTCAAGTC 57.727 40.909 0.00 0.00 0.00 3.01
500 501 4.695217 TTCGTTTTGTTTCTGCTCAAGT 57.305 36.364 0.00 0.00 0.00 3.16
501 502 4.028509 CGTTTCGTTTTGTTTCTGCTCAAG 60.029 41.667 0.00 0.00 0.00 3.02
502 503 3.849145 CGTTTCGTTTTGTTTCTGCTCAA 59.151 39.130 0.00 0.00 0.00 3.02
503 504 3.125487 TCGTTTCGTTTTGTTTCTGCTCA 59.875 39.130 0.00 0.00 0.00 4.26
504 505 3.676540 TCGTTTCGTTTTGTTTCTGCTC 58.323 40.909 0.00 0.00 0.00 4.26
505 506 3.126343 ACTCGTTTCGTTTTGTTTCTGCT 59.874 39.130 0.00 0.00 0.00 4.24
506 507 3.422655 ACTCGTTTCGTTTTGTTTCTGC 58.577 40.909 0.00 0.00 0.00 4.26
507 508 5.985526 AAACTCGTTTCGTTTTGTTTCTG 57.014 34.783 0.00 0.00 30.93 3.02
508 509 7.804600 AGTTAAAACTCGTTTCGTTTTGTTTCT 59.195 29.630 10.20 2.68 42.59 2.52
509 510 7.931493 AGTTAAAACTCGTTTCGTTTTGTTTC 58.069 30.769 10.20 0.96 42.59 2.78
510 511 7.856492 AGTTAAAACTCGTTTCGTTTTGTTT 57.144 28.000 10.20 0.00 42.59 2.83
511 512 7.483119 GAGTTAAAACTCGTTTCGTTTTGTT 57.517 32.000 7.08 0.00 45.11 2.83
542 543 8.476447 GCTTTCCTTCCAGTAAGTTATAGTACT 58.524 37.037 0.00 0.00 32.89 2.73
543 544 8.476447 AGCTTTCCTTCCAGTAAGTTATAGTAC 58.524 37.037 0.00 0.00 32.89 2.73
544 545 8.475639 CAGCTTTCCTTCCAGTAAGTTATAGTA 58.524 37.037 0.00 0.00 32.89 1.82
545 546 7.331791 CAGCTTTCCTTCCAGTAAGTTATAGT 58.668 38.462 0.00 0.00 32.89 2.12
546 547 6.763610 CCAGCTTTCCTTCCAGTAAGTTATAG 59.236 42.308 0.00 0.00 32.89 1.31
547 548 6.442564 TCCAGCTTTCCTTCCAGTAAGTTATA 59.557 38.462 0.00 0.00 32.89 0.98
613 622 0.038892 TAGCCTTGTCGACGGTGAAC 60.039 55.000 11.62 0.00 0.00 3.18
807 1654 1.615116 GGGGGCGGGTTATTTATAGGC 60.615 57.143 0.00 0.00 0.00 3.93
871 1719 1.000171 GTTGCAAGGCAGAAAAGGAGG 60.000 52.381 0.00 0.00 40.61 4.30
887 1735 2.659063 GGGATGGGGCTTTGGTTGC 61.659 63.158 0.00 0.00 0.00 4.17
974 1825 2.439507 AGCACAAGTCCAAGGAGAAGAA 59.560 45.455 0.00 0.00 0.00 2.52
975 1826 2.050144 AGCACAAGTCCAAGGAGAAGA 58.950 47.619 0.00 0.00 0.00 2.87
976 1827 2.551459 CAAGCACAAGTCCAAGGAGAAG 59.449 50.000 0.00 0.00 0.00 2.85
990 1841 2.033294 TGCGCCATACCAAGCACA 59.967 55.556 4.18 0.00 34.39 4.57
1063 1914 4.020617 CAGCGAACCAGGGCAGGA 62.021 66.667 1.94 0.00 0.00 3.86
1074 1925 2.652095 CGGGTAGGGGAACAGCGAA 61.652 63.158 0.00 0.00 0.00 4.70
1444 2295 7.980099 GCATGACAGGTACTATAAAACTACTGT 59.020 37.037 0.00 0.00 40.28 3.55
1512 2371 0.661552 CCGCATCTGCTCATTCCAAG 59.338 55.000 0.09 0.00 39.32 3.61
1655 2524 2.632136 TTCGTTTCGTCAGCGGTGGT 62.632 55.000 15.67 0.00 38.89 4.16
1658 2527 2.308039 GCTTCGTTTCGTCAGCGGT 61.308 57.895 0.00 0.00 38.89 5.68
1706 2575 2.290367 TCACGAAATCAAACACCTGCAG 59.710 45.455 6.78 6.78 0.00 4.41
1707 2576 2.293170 TCACGAAATCAAACACCTGCA 58.707 42.857 0.00 0.00 0.00 4.41
1812 2681 0.341258 ATGGGCAAGAGGAGAGGAGA 59.659 55.000 0.00 0.00 0.00 3.71
1825 2694 0.979665 GGCTAGCTAGATGATGGGCA 59.020 55.000 25.15 0.00 37.98 5.36
1846 2715 1.661821 GCGACCATGCTAGCGGTAG 60.662 63.158 17.24 17.24 34.99 3.18
1847 2716 2.415843 GCGACCATGCTAGCGGTA 59.584 61.111 13.57 0.00 34.99 4.02
1848 2717 4.530857 GGCGACCATGCTAGCGGT 62.531 66.667 13.48 13.48 38.56 5.68
1865 2734 1.332195 TGGAGCTGGTGATAGATCGG 58.668 55.000 0.00 0.00 34.02 4.18
1875 2748 1.341080 CCCACAAAAATGGAGCTGGT 58.659 50.000 0.00 0.00 43.02 4.00
1972 2850 3.435186 GGCAGGAACTCGCTTGCC 61.435 66.667 0.00 0.00 34.60 4.52
2021 2903 1.671054 CGAATGAGTGGGCGGTTGT 60.671 57.895 0.00 0.00 0.00 3.32
2176 3063 1.269723 TCGACGCATCTGAAGTGAACT 59.730 47.619 0.00 0.00 0.00 3.01
2179 3066 0.454452 CGTCGACGCATCTGAAGTGA 60.454 55.000 26.59 0.00 0.00 3.41
2397 3304 3.006859 TCATTGACACCGATCAGTCACTT 59.993 43.478 10.98 2.02 43.80 3.16
2409 3316 2.424601 CCACACCATCATCATTGACACC 59.575 50.000 0.00 0.00 33.85 4.16
2411 3318 3.438216 ACCACACCATCATCATTGACA 57.562 42.857 0.00 0.00 33.85 3.58
2425 3332 1.656441 CCAGCTCTGCAAACCACAC 59.344 57.895 0.00 0.00 0.00 3.82
2426 3333 1.529010 CCCAGCTCTGCAAACCACA 60.529 57.895 0.00 0.00 0.00 4.17
2427 3334 2.270986 CCCCAGCTCTGCAAACCAC 61.271 63.158 0.00 0.00 0.00 4.16
2862 3769 2.035237 TAATTAGTCCAGCCCGCCGG 62.035 60.000 0.00 0.00 0.00 6.13
2863 3770 0.034896 ATAATTAGTCCAGCCCGCCG 59.965 55.000 0.00 0.00 0.00 6.46
2864 3771 2.271944 AATAATTAGTCCAGCCCGCC 57.728 50.000 0.00 0.00 0.00 6.13
2865 3772 3.003378 GTGAAATAATTAGTCCAGCCCGC 59.997 47.826 0.00 0.00 0.00 6.13
2867 3774 4.036852 GCAGTGAAATAATTAGTCCAGCCC 59.963 45.833 0.00 0.00 0.00 5.19
2871 3778 6.533723 CACGTAGCAGTGAAATAATTAGTCCA 59.466 38.462 0.00 0.00 44.43 4.02
2927 3841 0.318699 GCCTTTGGCTTTGTTCGGAC 60.319 55.000 0.73 0.00 46.69 4.79
3022 3936 6.510879 AAAAGAAGGGCGGTTAATTAGAAG 57.489 37.500 0.00 0.00 0.00 2.85
3142 4056 6.209391 AGGCTTTGTTGTTGCTATTTACTCAT 59.791 34.615 0.00 0.00 0.00 2.90
3218 4133 6.256975 AGTTTTTAAAACGGAGGCAAAACATC 59.743 34.615 13.89 0.00 36.84 3.06
3223 4151 8.168790 AGTATAGTTTTTAAAACGGAGGCAAA 57.831 30.769 13.89 0.00 0.00 3.68
3261 4194 8.581057 AGCTTACGAATAACATGATCTTGTAG 57.419 34.615 14.07 7.00 0.00 2.74
3265 4198 6.647067 GGCTAGCTTACGAATAACATGATCTT 59.353 38.462 15.72 0.00 0.00 2.40
3268 4201 5.238583 GGGCTAGCTTACGAATAACATGAT 58.761 41.667 15.72 0.00 0.00 2.45
3287 4220 4.882842 ACATTTTATTTTGAACCGGGCT 57.117 36.364 6.32 0.00 0.00 5.19
3288 4221 7.463515 CGAATAACATTTTATTTTGAACCGGGC 60.464 37.037 6.32 0.00 37.92 6.13
3289 4222 7.542824 ACGAATAACATTTTATTTTGAACCGGG 59.457 33.333 6.32 0.00 37.92 5.73
3290 4223 8.455598 ACGAATAACATTTTATTTTGAACCGG 57.544 30.769 0.00 0.00 37.92 5.28
3332 4265 5.804979 CGGCCAGAAAAATCGAATTTATTGT 59.195 36.000 2.24 0.00 0.00 2.71
3333 4266 5.276348 GCGGCCAGAAAAATCGAATTTATTG 60.276 40.000 2.24 1.38 0.00 1.90
3346 4279 0.251121 TGAATCCAGCGGCCAGAAAA 60.251 50.000 2.24 0.00 0.00 2.29
3385 4318 5.163509 GCTGGGGAAAAGGATGAAATAAGAC 60.164 44.000 0.00 0.00 0.00 3.01
3407 4340 0.102120 CGGCATCTCGAGAAGAAGCT 59.898 55.000 20.91 0.00 45.82 3.74
3420 4354 2.414691 GCAAGAGGAAAAAGACGGCATC 60.415 50.000 0.00 0.00 0.00 3.91
3421 4355 1.541588 GCAAGAGGAAAAAGACGGCAT 59.458 47.619 0.00 0.00 0.00 4.40
3422 4356 0.951558 GCAAGAGGAAAAAGACGGCA 59.048 50.000 0.00 0.00 0.00 5.69
3496 4434 1.004440 GCGAGGCAGTGAGAAAGGT 60.004 57.895 0.00 0.00 0.00 3.50
3516 4454 2.124570 ATGTGGCGGCATGAGGAC 60.125 61.111 17.19 0.65 0.00 3.85
3537 4475 3.818787 GAGGCAGCGGCACATTGG 61.819 66.667 11.88 0.00 43.71 3.16
3538 4476 2.749044 AGAGGCAGCGGCACATTG 60.749 61.111 11.88 0.00 43.71 2.82
3539 4477 2.749044 CAGAGGCAGCGGCACATT 60.749 61.111 11.88 0.00 43.71 2.71
3540 4478 4.790962 CCAGAGGCAGCGGCACAT 62.791 66.667 11.88 0.00 43.71 3.21
3576 4514 0.392327 GTGGAAGGCTGGAGAAGAGC 60.392 60.000 0.00 0.00 35.57 4.09
3603 4543 1.807142 GAAGCTGGTTAGTTCAGGTGC 59.193 52.381 0.00 0.00 41.42 5.01
3604 4544 2.427506 GGAAGCTGGTTAGTTCAGGTG 58.572 52.381 0.00 0.00 41.42 4.00
3613 4553 0.178873 AGGGAGTGGGAAGCTGGTTA 60.179 55.000 0.00 0.00 0.00 2.85
3616 4556 0.322906 GAAAGGGAGTGGGAAGCTGG 60.323 60.000 0.00 0.00 0.00 4.85
3679 4623 2.876091 CGTGCAACTCCGATAAAGAGA 58.124 47.619 0.00 0.00 35.27 3.10
3685 4629 1.226575 CTCGCGTGCAACTCCGATA 60.227 57.895 5.77 0.00 37.54 2.92
3715 4659 2.705826 CCTGAATTCGCAGCTCGC 59.294 61.111 0.04 0.00 38.27 5.03
3723 4667 4.701956 ATTGGTAAGTTGCCTGAATTCG 57.298 40.909 11.57 0.00 0.00 3.34
3734 4678 3.068560 TCGCGTTTGCTATTGGTAAGTT 58.931 40.909 5.77 0.00 39.65 2.66
3741 4685 4.252242 CGCTCGCGTTTGCTATTG 57.748 55.556 5.77 0.00 39.65 1.90
3763 4707 5.359756 TGTTGGATGCACTACACATAGATC 58.640 41.667 0.00 0.00 32.23 2.75
3766 4710 5.008019 GGAATGTTGGATGCACTACACATAG 59.992 44.000 3.09 0.00 34.25 2.23
3785 4729 0.810031 CCGAGCTGGGTTACGGAATG 60.810 60.000 6.60 0.00 46.94 2.67
3809 4753 3.803082 CATGCAGTTCACGCGGGG 61.803 66.667 9.32 0.00 0.00 5.73
3814 4758 3.598678 CATCTGCATGCAGTTCACG 57.401 52.632 39.08 23.08 43.96 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.