Multiple sequence alignment - TraesCS5D01G200600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G200600 chr5D 100.000 3305 0 0 1 3305 302974682 302971378 0.000000e+00 6104
1 TraesCS5D01G200600 chr5A 92.168 3039 152 34 336 3303 394752868 394755891 0.000000e+00 4215
2 TraesCS5D01G200600 chr5A 90.286 350 23 6 1 344 394750517 394750861 6.510000e-122 448
3 TraesCS5D01G200600 chr5B 90.620 2889 139 36 435 3305 347989863 347987089 0.000000e+00 3712
4 TraesCS5D01G200600 chr5B 90.865 416 26 7 1 409 347991791 347991381 6.240000e-152 547
5 TraesCS5D01G200600 chr6D 75.849 265 44 14 1876 2121 388322445 388322182 2.080000e-22 117
6 TraesCS5D01G200600 chr6B 75.093 269 42 17 1876 2121 580241369 580241103 5.830000e-18 102
7 TraesCS5D01G200600 chr6A 75.093 269 42 17 1876 2121 534949314 534949048 5.830000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G200600 chr5D 302971378 302974682 3304 True 6104.0 6104 100.0000 1 3305 1 chr5D.!!$R1 3304
1 TraesCS5D01G200600 chr5A 394750517 394755891 5374 False 2331.5 4215 91.2270 1 3303 2 chr5A.!!$F1 3302
2 TraesCS5D01G200600 chr5B 347987089 347991791 4702 True 2129.5 3712 90.7425 1 3305 2 chr5B.!!$R1 3304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 98 0.032952 GGTCAAAAGAAAACGGGGGC 59.967 55.0 0.0 0.0 0.00 5.80 F
504 4019 0.039617 TGTCCGCTGAATTTTTGCCG 60.040 50.0 0.0 0.0 0.00 5.69 F
506 4021 0.521291 TCCGCTGAATTTTTGCCGAG 59.479 50.0 0.0 0.0 0.00 4.63 F
1469 5036 0.534203 GAAGAACGGCAAGGGTGACA 60.534 55.0 0.0 0.0 30.49 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1318 4882 0.179108 GGAACAGCGGGCTACTAGTG 60.179 60.000 5.39 0.00 0.0 2.74 R
1527 5094 1.612395 CCAGCTCGCCTTCTTCCTCT 61.612 60.000 0.00 0.00 0.0 3.69 R
1810 5377 2.434359 CGCCCGTCTTCTTGGTCC 60.434 66.667 0.00 0.00 0.0 4.46 R
2513 6126 0.386352 GAGGCCGCGGTGTTTTTAAC 60.386 55.000 28.70 5.99 0.0 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.337763 CTGCACAAACTAGATGCGATTTC 58.662 43.478 0.00 0.00 42.44 2.17
55 56 2.855180 CGATTTCGCAATATCATGGCC 58.145 47.619 0.00 0.00 0.00 5.36
87 93 5.981174 TCGTGATTAGGTCAAAAGAAAACG 58.019 37.500 0.00 0.00 38.90 3.60
92 98 0.032952 GGTCAAAAGAAAACGGGGGC 59.967 55.000 0.00 0.00 0.00 5.80
93 99 0.747852 GTCAAAAGAAAACGGGGGCA 59.252 50.000 0.00 0.00 0.00 5.36
94 100 1.137282 GTCAAAAGAAAACGGGGGCAA 59.863 47.619 0.00 0.00 0.00 4.52
102 108 0.688087 AAACGGGGGCAAAAAGTGGA 60.688 50.000 0.00 0.00 0.00 4.02
122 128 4.215399 TGGACAGAAGGAAAAATTGCTACG 59.785 41.667 0.00 0.00 0.00 3.51
123 129 4.215613 GGACAGAAGGAAAAATTGCTACGT 59.784 41.667 0.00 0.00 0.00 3.57
124 130 5.410439 GGACAGAAGGAAAAATTGCTACGTA 59.590 40.000 0.00 0.00 0.00 3.57
142 148 6.594937 GCTACGTACTACTAGATCTTAGGCAT 59.405 42.308 0.00 0.00 0.00 4.40
161 167 1.645710 TCCTCCTTTCTCTGTGGACC 58.354 55.000 0.00 0.00 0.00 4.46
187 193 4.883021 TCTCTAGGACAGGATTAGGTGT 57.117 45.455 0.00 0.00 0.00 4.16
190 196 5.422331 TCTCTAGGACAGGATTAGGTGTTTG 59.578 44.000 0.00 0.00 0.00 2.93
234 240 6.326323 TGGTGCAGAAAGAGGTGTGATATATA 59.674 38.462 0.00 0.00 0.00 0.86
244 250 6.493802 AGAGGTGTGATATATAGCGGAGAAAA 59.506 38.462 0.00 0.00 0.00 2.29
250 256 9.151471 TGTGATATATAGCGGAGAAAATAAAGC 57.849 33.333 0.00 0.00 0.00 3.51
298 304 5.471556 AACACATTTCATTTCATCAGCCA 57.528 34.783 0.00 0.00 0.00 4.75
355 2376 3.680937 CGGAAACTAAACCATACTGCGAA 59.319 43.478 0.00 0.00 0.00 4.70
454 3969 2.966309 GCTCACCGGGCTGTTTTCG 61.966 63.158 6.32 0.00 0.00 3.46
503 4018 2.368655 ATGTCCGCTGAATTTTTGCC 57.631 45.000 0.00 0.00 0.00 4.52
504 4019 0.039617 TGTCCGCTGAATTTTTGCCG 60.040 50.000 0.00 0.00 0.00 5.69
506 4021 0.521291 TCCGCTGAATTTTTGCCGAG 59.479 50.000 0.00 0.00 0.00 4.63
520 4035 2.291043 CCGAGGGTGTGGCTAGGTT 61.291 63.158 0.00 0.00 0.00 3.50
533 4048 3.575256 TGGCTAGGTTTTAGTCGACTGAA 59.425 43.478 28.12 22.87 0.00 3.02
595 4129 9.468532 ACTGAAAAGAGAAAATGCACTTATTTC 57.531 29.630 0.00 0.00 34.14 2.17
611 4145 8.871862 GCACTTATTTCAATGCATAATTTCACA 58.128 29.630 0.00 0.00 38.00 3.58
650 4194 4.474113 AGCTAACAAAGTCTTAGTCGACG 58.526 43.478 10.46 0.00 38.90 5.12
672 4216 7.504924 ACGGAGACTTATCAAAATTGTTTCA 57.495 32.000 0.00 0.00 0.00 2.69
809 4354 0.913934 TGGCCAGTCAATCAGCCCTA 60.914 55.000 0.00 0.00 45.14 3.53
890 4435 5.362556 AACTGAAAACGAGACATCAATGG 57.637 39.130 0.00 0.00 0.00 3.16
918 4466 8.415950 AAAAGAGAGAGAAATGAGACAGAGTA 57.584 34.615 0.00 0.00 0.00 2.59
919 4467 8.415950 AAAGAGAGAGAAATGAGACAGAGTAA 57.584 34.615 0.00 0.00 0.00 2.24
1454 5018 3.319198 GGCCGGTGGTGGAGAAGA 61.319 66.667 1.90 0.00 0.00 2.87
1465 5032 1.375326 GGAGAAGAACGGCAAGGGT 59.625 57.895 0.00 0.00 0.00 4.34
1469 5036 0.534203 GAAGAACGGCAAGGGTGACA 60.534 55.000 0.00 0.00 30.49 3.58
1472 5039 3.414136 AACGGCAAGGGTGACAGCA 62.414 57.895 7.01 0.00 30.49 4.41
1477 5044 2.282040 AAGGGTGACAGCAGCAGC 60.282 61.111 7.01 0.00 44.15 5.25
1516 5083 1.595655 CTCGGAGGAGATCGAGCGA 60.596 63.158 0.00 0.00 44.68 4.93
1810 5377 2.418333 CGACAACGACGACGAGCTG 61.418 63.158 15.32 10.27 42.66 4.24
1841 5408 4.838152 GGCGGCCGAGCAATGAGA 62.838 66.667 33.48 0.00 39.27 3.27
1951 5521 0.891373 TGACGAGGAAAGGAGCAGAG 59.109 55.000 0.00 0.00 0.00 3.35
1952 5522 0.174617 GACGAGGAAAGGAGCAGAGG 59.825 60.000 0.00 0.00 0.00 3.69
2180 5750 0.038892 TCGACGTGTACCTTCCTTGC 60.039 55.000 0.00 0.00 0.00 4.01
2207 5777 3.991121 CGCCGGTTCCAATGTTTATTTTT 59.009 39.130 1.90 0.00 0.00 1.94
2254 5825 6.684686 AGCTACAGAAAATGTTGTACGTAGA 58.315 36.000 0.00 0.00 39.96 2.59
2256 5827 7.115947 AGCTACAGAAAATGTTGTACGTAGAAC 59.884 37.037 24.40 24.40 39.96 3.01
2413 5990 1.594517 CACGCATCACAATCACAACG 58.405 50.000 0.00 0.00 0.00 4.10
2508 6121 5.696724 GCATCAGAATTATTACTACTGCGGT 59.303 40.000 2.42 2.42 0.00 5.68
2509 6122 6.866770 GCATCAGAATTATTACTACTGCGGTA 59.133 38.462 5.05 5.05 0.00 4.02
2511 6124 6.978338 TCAGAATTATTACTACTGCGGTAGG 58.022 40.000 31.23 16.48 46.99 3.18
2512 6125 5.634020 CAGAATTATTACTACTGCGGTAGGC 59.366 44.000 31.23 12.93 46.99 3.93
2513 6126 3.631145 TTATTACTACTGCGGTAGGCG 57.369 47.619 31.23 12.47 46.99 5.52
2514 6127 1.396653 ATTACTACTGCGGTAGGCGT 58.603 50.000 31.23 17.17 46.99 5.68
2515 6128 1.176527 TTACTACTGCGGTAGGCGTT 58.823 50.000 31.23 16.18 46.99 4.84
2516 6129 2.036958 TACTACTGCGGTAGGCGTTA 57.963 50.000 31.23 15.24 46.99 3.18
2517 6130 1.176527 ACTACTGCGGTAGGCGTTAA 58.823 50.000 31.23 0.00 46.99 2.01
2518 6131 1.545582 ACTACTGCGGTAGGCGTTAAA 59.454 47.619 31.23 0.00 46.99 1.52
2519 6132 2.029110 ACTACTGCGGTAGGCGTTAAAA 60.029 45.455 31.23 0.00 46.99 1.52
2520 6133 3.554752 ACTACTGCGGTAGGCGTTAAAAA 60.555 43.478 31.23 0.00 46.99 1.94
2521 6134 5.615818 ACTACTGCGGTAGGCGTTAAAAAC 61.616 45.833 31.23 0.00 46.99 2.43
2522 6135 7.968985 ACTACTGCGGTAGGCGTTAAAAACA 62.969 44.000 31.23 0.00 46.99 2.83
2523 6136 1.954437 GCGGTAGGCGTTAAAAACAC 58.046 50.000 0.00 0.00 0.00 3.32
2524 6137 1.400113 GCGGTAGGCGTTAAAAACACC 60.400 52.381 0.00 0.00 33.77 4.16
2525 6138 1.136280 CGGTAGGCGTTAAAAACACCG 60.136 52.381 0.82 0.82 39.68 4.94
2526 6139 1.400113 GGTAGGCGTTAAAAACACCGC 60.400 52.381 0.00 0.00 45.05 5.68
2527 6140 0.512085 TAGGCGTTAAAAACACCGCG 59.488 50.000 0.00 0.00 46.62 6.46
2528 6141 1.726672 GGCGTTAAAAACACCGCGG 60.727 57.895 26.86 26.86 46.62 6.46
2587 6200 3.642705 TCGCAAGATCACCAGATAATCG 58.357 45.455 0.00 0.00 45.01 3.34
2629 6243 4.158025 TCTCTCGATCTACAACCCAAACTC 59.842 45.833 0.00 0.00 0.00 3.01
2748 6362 5.048713 AGCAAAGCAAAAGTAGCGTAAAGAT 60.049 36.000 0.00 0.00 37.01 2.40
2844 6458 4.653555 CCTGCAAAAGGGAAACGC 57.346 55.556 0.00 0.00 43.15 4.84
2845 6459 1.739049 CCTGCAAAAGGGAAACGCA 59.261 52.632 0.00 0.00 43.15 5.24
2851 6465 2.605580 GCAAAAGGGAAACGCAAGAGAG 60.606 50.000 0.00 0.00 43.62 3.20
2853 6467 2.930826 AAGGGAAACGCAAGAGAGAA 57.069 45.000 0.00 0.00 43.62 2.87
2854 6468 2.464157 AGGGAAACGCAAGAGAGAAG 57.536 50.000 0.00 0.00 43.62 2.85
2855 6469 0.799393 GGGAAACGCAAGAGAGAAGC 59.201 55.000 0.00 0.00 43.62 3.86
2856 6470 1.609320 GGGAAACGCAAGAGAGAAGCT 60.609 52.381 0.00 0.00 43.62 3.74
2857 6471 2.353803 GGGAAACGCAAGAGAGAAGCTA 60.354 50.000 0.00 0.00 43.62 3.32
2858 6472 3.526534 GGAAACGCAAGAGAGAAGCTAT 58.473 45.455 0.00 0.00 43.62 2.97
2859 6473 3.553917 GGAAACGCAAGAGAGAAGCTATC 59.446 47.826 0.00 0.00 43.62 2.08
2887 6501 1.830587 CTAGCCCTGGTCACTGCACA 61.831 60.000 0.00 0.00 0.00 4.57
2936 6550 3.340814 AAATTGCTCACAGATCGGAGT 57.659 42.857 0.00 0.00 33.66 3.85
2987 6601 7.549134 TGAAGGTATTATCACATGACAGAACAC 59.451 37.037 0.00 0.00 0.00 3.32
3038 6655 4.466015 TCCAAAAGGCATTAATGAGTTCCC 59.534 41.667 19.73 9.97 0.00 3.97
3082 6699 0.806868 ACATCTGGTTTCAGCGCATG 59.193 50.000 11.47 5.22 40.69 4.06
3089 6706 2.017049 GGTTTCAGCGCATGGAGTTAT 58.983 47.619 11.47 0.00 0.00 1.89
3106 6723 5.475909 GGAGTTATATGAGGACACGATGGTA 59.524 44.000 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.001764 TGCAGGCTGAATCACCCAG 60.002 57.895 20.86 0.00 34.88 4.45
41 42 1.395954 CATCTCGGCCATGATATTGCG 59.604 52.381 2.24 0.00 0.00 4.85
45 46 2.740904 CGATGCATCTCGGCCATGATAT 60.741 50.000 23.73 0.00 35.03 1.63
46 47 1.404583 CGATGCATCTCGGCCATGATA 60.405 52.381 23.73 0.00 35.03 2.15
49 50 1.596203 ACGATGCATCTCGGCCATG 60.596 57.895 23.73 8.58 42.88 3.66
50 51 1.596203 CACGATGCATCTCGGCCAT 60.596 57.895 23.73 0.00 42.88 4.40
51 52 2.031674 ATCACGATGCATCTCGGCCA 62.032 55.000 23.73 2.91 42.88 5.36
52 53 0.882042 AATCACGATGCATCTCGGCC 60.882 55.000 23.73 0.00 42.88 6.13
54 55 2.288457 ACCTAATCACGATGCATCTCGG 60.288 50.000 23.73 12.50 42.88 4.63
55 56 2.983136 GACCTAATCACGATGCATCTCG 59.017 50.000 23.73 16.14 44.14 4.04
87 93 0.469144 TCTGTCCACTTTTTGCCCCC 60.469 55.000 0.00 0.00 0.00 5.40
92 98 7.677041 GCAATTTTTCCTTCTGTCCACTTTTTG 60.677 37.037 0.00 0.00 0.00 2.44
93 99 6.316140 GCAATTTTTCCTTCTGTCCACTTTTT 59.684 34.615 0.00 0.00 0.00 1.94
94 100 5.817296 GCAATTTTTCCTTCTGTCCACTTTT 59.183 36.000 0.00 0.00 0.00 2.27
102 108 5.995897 AGTACGTAGCAATTTTTCCTTCTGT 59.004 36.000 0.00 0.00 0.00 3.41
122 128 6.600427 GGAGGATGCCTAAGATCTAGTAGTAC 59.400 46.154 0.00 0.00 31.76 2.73
123 129 6.506056 AGGAGGATGCCTAAGATCTAGTAGTA 59.494 42.308 0.00 0.00 36.22 1.82
124 130 5.314841 AGGAGGATGCCTAAGATCTAGTAGT 59.685 44.000 0.00 0.00 36.22 2.73
142 148 1.645710 GGTCCACAGAGAAAGGAGGA 58.354 55.000 0.00 0.00 30.78 3.71
161 167 4.517453 CCTAATCCTGTCCTAGAGAACTCG 59.483 50.000 0.00 0.00 34.09 4.18
187 193 7.335171 CACCATGACATGTCTCTTTCTATCAAA 59.665 37.037 25.55 1.83 0.00 2.69
190 196 5.236047 GCACCATGACATGTCTCTTTCTATC 59.764 44.000 25.55 4.48 0.00 2.08
234 240 3.428045 GCATGTGCTTTATTTTCTCCGCT 60.428 43.478 0.00 0.00 38.21 5.52
250 256 1.132436 CACGGCGTTGTAGCATGTG 59.868 57.895 11.19 0.00 38.18 3.21
298 304 1.553704 GATCAACCTAACCCACCGACT 59.446 52.381 0.00 0.00 0.00 4.18
355 2376 3.118555 TGTTGTACTTGTACCACTGCAGT 60.119 43.478 15.25 15.25 0.00 4.40
454 3969 6.877611 TCAAGTTTATCCTTGAAACCACTC 57.122 37.500 1.35 0.00 45.82 3.51
485 4000 0.039617 CGGCAAAAATTCAGCGGACA 60.040 50.000 0.00 0.00 0.00 4.02
503 4018 0.036306 AAAACCTAGCCACACCCTCG 59.964 55.000 0.00 0.00 0.00 4.63
504 4019 2.305052 ACTAAAACCTAGCCACACCCTC 59.695 50.000 0.00 0.00 0.00 4.30
506 4021 2.708051 GACTAAAACCTAGCCACACCC 58.292 52.381 0.00 0.00 0.00 4.61
564 4098 9.468532 AAGTGCATTTTCTCTTTTCAGTATTTC 57.531 29.630 0.00 0.00 0.00 2.17
577 4111 7.585286 TGCATTGAAATAAGTGCATTTTCTC 57.415 32.000 0.00 0.00 42.13 2.87
606 4140 7.941919 AGCTCAGTCGATACTATATTTGTGAA 58.058 34.615 0.00 0.00 33.48 3.18
619 4153 5.899120 AGACTTTGTTAGCTCAGTCGATA 57.101 39.130 0.00 0.00 0.00 2.92
672 4216 2.038659 CCCTGTCACCCAAACATTTGT 58.961 47.619 3.79 0.00 36.45 2.83
809 4354 4.141824 GCTGTTCCTGCTCCTTAATCTAGT 60.142 45.833 0.00 0.00 0.00 2.57
847 4392 2.530701 TCCTCCTTTCCAGTCTCTGAC 58.469 52.381 0.00 0.00 32.44 3.51
918 4466 4.099419 CCTCCAGGTTTGTTTGTTTAGCTT 59.901 41.667 0.00 0.00 0.00 3.74
919 4467 3.636764 CCTCCAGGTTTGTTTGTTTAGCT 59.363 43.478 0.00 0.00 0.00 3.32
1318 4882 0.179108 GGAACAGCGGGCTACTAGTG 60.179 60.000 5.39 0.00 0.00 2.74
1378 4942 2.426023 GTCACCTTGGGCGACTGT 59.574 61.111 0.00 0.00 0.00 3.55
1454 5018 2.594592 GCTGTCACCCTTGCCGTT 60.595 61.111 0.00 0.00 0.00 4.44
1465 5032 2.262603 CTACCGCTGCTGCTGTCA 59.737 61.111 15.51 3.28 37.75 3.58
1469 5036 4.463879 CCTGCTACCGCTGCTGCT 62.464 66.667 14.03 0.00 36.97 4.24
1472 5039 4.087892 CCACCTGCTACCGCTGCT 62.088 66.667 0.00 0.00 36.97 4.24
1477 5044 2.264794 GTGACCCACCTGCTACCG 59.735 66.667 0.00 0.00 0.00 4.02
1499 5066 1.888172 GTCGCTCGATCTCCTCCGA 60.888 63.158 0.00 0.00 0.00 4.55
1527 5094 1.612395 CCAGCTCGCCTTCTTCCTCT 61.612 60.000 0.00 0.00 0.00 3.69
1549 5116 2.491022 CCTGATCCCGACGGTCTCC 61.491 68.421 13.94 0.00 0.00 3.71
1727 5294 4.719369 GGAGAACACGCTCGCGGT 62.719 66.667 16.18 7.81 44.69 5.68
1810 5377 2.434359 CGCCCGTCTTCTTGGTCC 60.434 66.667 0.00 0.00 0.00 4.46
1841 5408 3.063084 GGAGCAGTCGTCTCCCGT 61.063 66.667 0.00 0.00 43.32 5.28
2254 5825 3.813166 ACATTGAATCACGGAGAAACGTT 59.187 39.130 0.00 0.00 46.25 3.99
2256 5827 3.481951 CGACATTGAATCACGGAGAAACG 60.482 47.826 0.00 0.00 40.31 3.60
2413 5990 6.963796 TCTGATTTCTGCTCTGTTTCTTTTC 58.036 36.000 0.00 0.00 0.00 2.29
2512 6125 1.726672 GGCCGCGGTGTTTTTAACG 60.727 57.895 28.70 0.00 0.00 3.18
2513 6126 0.386352 GAGGCCGCGGTGTTTTTAAC 60.386 55.000 28.70 5.99 0.00 2.01
2514 6127 0.818445 TGAGGCCGCGGTGTTTTTAA 60.818 50.000 28.70 1.52 0.00 1.52
2515 6128 1.227883 TGAGGCCGCGGTGTTTTTA 60.228 52.632 28.70 4.17 0.00 1.52
2516 6129 2.517402 TGAGGCCGCGGTGTTTTT 60.517 55.556 28.70 5.94 0.00 1.94
2517 6130 2.978010 CTGAGGCCGCGGTGTTTT 60.978 61.111 28.70 7.90 0.00 2.43
2580 6193 8.424918 ACCATCCCTTATCATATGTCGATTATC 58.575 37.037 1.90 0.00 0.00 1.75
2587 6200 6.405286 CGAGAGACCATCCCTTATCATATGTC 60.405 46.154 1.90 0.00 0.00 3.06
2599 6212 2.865079 TGTAGATCGAGAGACCATCCC 58.135 52.381 0.00 0.00 46.97 3.85
2629 6243 2.198827 TGGTGTAAACTGATGCCTGG 57.801 50.000 0.00 0.00 0.00 4.45
2748 6362 0.973632 ACGAGTTGGGCACACTCATA 59.026 50.000 15.70 0.00 0.00 2.15
2853 6467 5.076873 CAGGGCTAGAAGTAGAAGATAGCT 58.923 45.833 0.00 0.00 39.04 3.32
2854 6468 4.219725 CCAGGGCTAGAAGTAGAAGATAGC 59.780 50.000 0.00 0.00 38.47 2.97
2855 6469 5.390387 ACCAGGGCTAGAAGTAGAAGATAG 58.610 45.833 0.00 0.00 0.00 2.08
2856 6470 5.103643 TGACCAGGGCTAGAAGTAGAAGATA 60.104 44.000 0.00 0.00 0.00 1.98
2857 6471 4.219919 GACCAGGGCTAGAAGTAGAAGAT 58.780 47.826 0.00 0.00 0.00 2.40
2858 6472 3.011369 TGACCAGGGCTAGAAGTAGAAGA 59.989 47.826 0.00 0.00 0.00 2.87
2859 6473 3.131400 GTGACCAGGGCTAGAAGTAGAAG 59.869 52.174 0.00 0.00 0.00 2.85
2936 6550 5.177326 AGAAACAAATTTTCAGCACAAGCA 58.823 33.333 0.00 0.00 45.49 3.91
3082 6699 4.281182 ACCATCGTGTCCTCATATAACTCC 59.719 45.833 0.00 0.00 0.00 3.85
3089 6706 5.862678 TTTCATACCATCGTGTCCTCATA 57.137 39.130 0.00 0.00 0.00 2.15
3106 6723 2.097825 GCCTGCCTGAGTGATTTTCAT 58.902 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.