Multiple sequence alignment - TraesCS5D01G200300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G200300 chr5D 100.000 3401 0 0 1 3401 302892053 302888653 0.000000e+00 6281.0
1 TraesCS5D01G200300 chr5D 100.000 3247 0 0 6151 9397 302885903 302882657 0.000000e+00 5997.0
2 TraesCS5D01G200300 chr5D 100.000 1970 0 0 3742 5711 302888312 302886343 0.000000e+00 3639.0
3 TraesCS5D01G200300 chr5D 98.721 1564 20 0 3742 5305 111605609 111604046 0.000000e+00 2778.0
4 TraesCS5D01G200300 chr5D 98.507 1541 22 1 3763 5302 382353457 382351917 0.000000e+00 2717.0
5 TraesCS5D01G200300 chr5D 96.349 849 27 1 2553 3401 382355252 382354408 0.000000e+00 1393.0
6 TraesCS5D01G200300 chr5D 96.310 840 23 3 2544 3380 111606849 111606015 0.000000e+00 1373.0
7 TraesCS5D01G200300 chr5D 95.070 791 34 2 2611 3401 76021156 76020371 0.000000e+00 1240.0
8 TraesCS5D01G200300 chr5A 94.301 3018 125 17 6151 9143 395055851 395058846 0.000000e+00 4577.0
9 TraesCS5D01G200300 chr5A 90.398 1937 79 29 693 2553 395053427 395055332 0.000000e+00 2447.0
10 TraesCS5D01G200300 chr5A 87.264 848 91 12 2553 3397 484441614 484442447 0.000000e+00 952.0
11 TraesCS5D01G200300 chr5A 86.029 544 54 11 1 534 395052812 395053343 1.770000e-156 564.0
12 TraesCS5D01G200300 chr5A 86.713 429 33 10 5303 5711 395055327 395055751 1.110000e-123 455.0
13 TraesCS5D01G200300 chr5A 91.981 212 12 3 9190 9396 395058844 395059055 9.230000e-75 292.0
14 TraesCS5D01G200300 chr5A 87.097 93 5 3 584 675 395053353 395053439 2.160000e-16 99.0
15 TraesCS5D01G200300 chr5B 94.865 2512 92 14 6657 9149 347698284 347695791 0.000000e+00 3890.0
16 TraesCS5D01G200300 chr5B 87.292 1204 100 23 1381 2553 347700912 347699731 0.000000e+00 1327.0
17 TraesCS5D01G200300 chr5B 83.359 649 62 19 693 1317 347701692 347701066 8.240000e-155 558.0
18 TraesCS5D01G200300 chr5B 90.732 410 21 7 5303 5711 347699736 347699343 1.800000e-146 531.0
19 TraesCS5D01G200300 chr5B 92.667 300 16 3 6171 6468 347698809 347698514 2.430000e-115 427.0
20 TraesCS5D01G200300 chr5B 85.311 354 38 4 1 347 347773009 347772663 4.170000e-93 353.0
21 TraesCS5D01G200300 chr5B 93.237 207 14 0 9190 9396 347695799 347695593 1.190000e-78 305.0
22 TraesCS5D01G200300 chr5B 84.974 193 27 2 340 531 347701972 347701781 2.680000e-45 195.0
23 TraesCS5D01G200300 chr5B 89.147 129 14 0 6172 6300 456202592 456202720 2.720000e-35 161.0
24 TraesCS5D01G200300 chr5B 100.000 29 0 0 6464 6492 347698313 347698285 5.000000e-03 54.7
25 TraesCS5D01G200300 chr6D 98.014 1561 31 0 3742 5302 11350621 11349061 0.000000e+00 2712.0
26 TraesCS5D01G200300 chr6D 92.606 852 55 4 2553 3401 375033630 375032784 0.000000e+00 1218.0
27 TraesCS5D01G200300 chr6D 91.304 115 10 0 6329 6443 210769640 210769526 3.510000e-34 158.0
28 TraesCS5D01G200300 chr1D 98.377 1540 25 0 3763 5302 314435551 314434012 0.000000e+00 2706.0
29 TraesCS5D01G200300 chr1D 96.010 827 28 2 2549 3375 357322549 357321728 0.000000e+00 1339.0
30 TraesCS5D01G200300 chr1D 97.171 707 15 2 2552 3258 314437234 314436533 0.000000e+00 1190.0
31 TraesCS5D01G200300 chr2D 97.474 1544 37 2 3759 5302 573954380 573952839 0.000000e+00 2634.0
32 TraesCS5D01G200300 chr2D 96.477 1561 54 1 3742 5302 115584622 115586181 0.000000e+00 2577.0
33 TraesCS5D01G200300 chr2D 95.801 762 27 2 2552 3313 573956119 573955363 0.000000e+00 1225.0
34 TraesCS5D01G200300 chr3D 96.303 1569 49 5 3743 5302 549649228 549650796 0.000000e+00 2567.0
35 TraesCS5D01G200300 chr3D 96.220 1561 58 1 3742 5302 178655107 178653548 0.000000e+00 2555.0
36 TraesCS5D01G200300 chr3D 96.327 1552 56 1 3755 5306 445294736 445296286 0.000000e+00 2549.0
37 TraesCS5D01G200300 chr3D 95.995 849 30 1 2553 3401 604896650 604895806 0.000000e+00 1376.0
38 TraesCS5D01G200300 chr3D 89.333 150 6 1 6171 6310 554073788 554073639 7.500000e-41 180.0
39 TraesCS5D01G200300 chr7A 91.667 408 34 0 2993 3400 13232409 13232002 4.930000e-157 566.0
40 TraesCS5D01G200300 chr7A 97.143 35 1 0 446 480 430268955 430268921 1.020000e-04 60.2
41 TraesCS5D01G200300 chr2A 83.086 538 82 6 1 531 78267350 78267885 1.840000e-131 481.0
42 TraesCS5D01G200300 chr2A 92.793 111 7 1 6329 6439 586454814 586454923 9.770000e-35 159.0
43 TraesCS5D01G200300 chr2A 78.166 229 45 4 5313 5538 397969064 397968838 3.540000e-29 141.0
44 TraesCS5D01G200300 chr2A 77.293 229 47 4 5313 5538 399330333 399330559 7.660000e-26 130.0
45 TraesCS5D01G200300 chr2B 93.711 159 8 2 5555 5711 743334550 743334708 4.390000e-58 237.0
46 TraesCS5D01G200300 chr2B 96.939 98 3 0 6171 6268 743334958 743335055 2.100000e-36 165.0
47 TraesCS5D01G200300 chr2B 92.174 115 9 0 6329 6443 88430038 88429924 7.550000e-36 163.0
48 TraesCS5D01G200300 chr2B 91.964 112 9 0 6329 6440 166470784 166470895 3.510000e-34 158.0
49 TraesCS5D01G200300 chr2B 79.670 182 36 1 5313 5493 222055955 222056136 7.660000e-26 130.0
50 TraesCS5D01G200300 chr7D 93.431 137 9 0 3265 3401 7541665 7541801 4.450000e-48 204.0
51 TraesCS5D01G200300 chr4D 92.254 142 8 3 5572 5711 453314941 453315081 2.070000e-46 198.0
52 TraesCS5D01G200300 chr4D 89.865 148 9 6 5566 5711 453316300 453316443 1.610000e-42 185.0
53 TraesCS5D01G200300 chr4D 89.209 139 13 1 5573 5711 453255801 453255937 1.250000e-38 172.0
54 TraesCS5D01G200300 chr4D 94.737 95 3 2 6171 6264 453315260 453315353 7.600000e-31 147.0
55 TraesCS5D01G200300 chr4A 91.429 140 9 3 5572 5708 13762908 13762769 1.250000e-43 189.0
56 TraesCS5D01G200300 chr4A 94.286 105 5 1 5608 5711 13776511 13776407 9.770000e-35 159.0
57 TraesCS5D01G200300 chr4A 87.500 144 9 5 5574 5709 13779554 13779412 3.510000e-34 158.0
58 TraesCS5D01G200300 chr4A 90.678 118 10 1 6329 6446 475905892 475905776 1.260000e-33 156.0
59 TraesCS5D01G200300 chr4A 91.667 108 9 0 6158 6265 13762661 13762554 5.880000e-32 150.0
60 TraesCS5D01G200300 chr3A 92.174 115 9 0 6329 6443 466795837 466795723 7.550000e-36 163.0
61 TraesCS5D01G200300 chr3A 83.648 159 24 2 5555 5711 456444293 456444451 2.110000e-31 148.0
62 TraesCS5D01G200300 chr3A 83.537 164 20 5 6151 6310 456444558 456444718 7.600000e-31 147.0
63 TraesCS5D01G200300 chr3A 75.566 221 43 9 5313 5530 520424922 520425134 2.160000e-16 99.0
64 TraesCS5D01G200300 chr4B 95.918 98 4 0 6171 6268 566977141 566977238 9.770000e-35 159.0
65 TraesCS5D01G200300 chr6B 91.304 115 10 0 6329 6443 553056352 553056238 3.510000e-34 158.0
66 TraesCS5D01G200300 chr6B 78.756 193 34 6 5306 5495 576014226 576014414 1.280000e-23 122.0
67 TraesCS5D01G200300 chr3B 78.022 182 39 1 5313 5493 558090207 558090388 7.710000e-21 113.0
68 TraesCS5D01G200300 chr1A 77.473 182 39 2 5313 5493 257769197 257769377 3.590000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G200300 chr5D 302882657 302892053 9396 True 5305.666667 6281 100.000000 1 9397 3 chr5D.!!$R3 9396
1 TraesCS5D01G200300 chr5D 111604046 111606849 2803 True 2075.500000 2778 97.515500 2544 5305 2 chr5D.!!$R2 2761
2 TraesCS5D01G200300 chr5D 382351917 382355252 3335 True 2055.000000 2717 97.428000 2553 5302 2 chr5D.!!$R4 2749
3 TraesCS5D01G200300 chr5D 76020371 76021156 785 True 1240.000000 1240 95.070000 2611 3401 1 chr5D.!!$R1 790
4 TraesCS5D01G200300 chr5A 395052812 395059055 6243 False 1405.666667 4577 89.419833 1 9396 6 chr5A.!!$F2 9395
5 TraesCS5D01G200300 chr5A 484441614 484442447 833 False 952.000000 952 87.264000 2553 3397 1 chr5A.!!$F1 844
6 TraesCS5D01G200300 chr5B 347695593 347701972 6379 True 910.962500 3890 90.890750 340 9396 8 chr5B.!!$R2 9056
7 TraesCS5D01G200300 chr6D 11349061 11350621 1560 True 2712.000000 2712 98.014000 3742 5302 1 chr6D.!!$R1 1560
8 TraesCS5D01G200300 chr6D 375032784 375033630 846 True 1218.000000 1218 92.606000 2553 3401 1 chr6D.!!$R3 848
9 TraesCS5D01G200300 chr1D 314434012 314437234 3222 True 1948.000000 2706 97.774000 2552 5302 2 chr1D.!!$R2 2750
10 TraesCS5D01G200300 chr1D 357321728 357322549 821 True 1339.000000 1339 96.010000 2549 3375 1 chr1D.!!$R1 826
11 TraesCS5D01G200300 chr2D 115584622 115586181 1559 False 2577.000000 2577 96.477000 3742 5302 1 chr2D.!!$F1 1560
12 TraesCS5D01G200300 chr2D 573952839 573956119 3280 True 1929.500000 2634 96.637500 2552 5302 2 chr2D.!!$R1 2750
13 TraesCS5D01G200300 chr3D 549649228 549650796 1568 False 2567.000000 2567 96.303000 3743 5302 1 chr3D.!!$F2 1559
14 TraesCS5D01G200300 chr3D 178653548 178655107 1559 True 2555.000000 2555 96.220000 3742 5302 1 chr3D.!!$R1 1560
15 TraesCS5D01G200300 chr3D 445294736 445296286 1550 False 2549.000000 2549 96.327000 3755 5306 1 chr3D.!!$F1 1551
16 TraesCS5D01G200300 chr3D 604895806 604896650 844 True 1376.000000 1376 95.995000 2553 3401 1 chr3D.!!$R3 848
17 TraesCS5D01G200300 chr2A 78267350 78267885 535 False 481.000000 481 83.086000 1 531 1 chr2A.!!$F1 530
18 TraesCS5D01G200300 chr2B 743334550 743335055 505 False 201.000000 237 95.325000 5555 6268 2 chr2B.!!$F3 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 437 1.002990 CCCCGTGGGTCTGGTAAAC 60.003 63.158 3.83 0.0 38.25 2.01 F
1393 1566 1.071228 AGTTCGGGGTCTTTAAACGCT 59.929 47.619 0.00 0.0 32.99 5.07 F
1778 1982 0.034477 GTCAACCAACGGGGATGGAT 60.034 55.000 2.06 0.0 39.78 3.41 F
1785 1989 2.092646 CCAACGGGGATGGATGTAAAGA 60.093 50.000 0.00 0.0 40.56 2.52 F
2936 3144 1.678627 AGAGACTCGGGTTCGATCATG 59.321 52.381 0.00 0.0 45.04 3.07 F
3129 3337 0.471617 GCATCCATCAGTACCTGGCT 59.528 55.000 0.00 0.0 32.30 4.75 F
3336 3544 2.511600 GCCCATCCGTCGTTCCAG 60.512 66.667 0.00 0.0 0.00 3.86 F
5276 9730 1.687368 CCCTACAACCTACGCCCTAGT 60.687 57.143 0.00 0.0 0.00 2.57 F
5566 10038 0.240145 TGTGGCAACTAGTCGTCGAG 59.760 55.000 0.00 0.0 37.61 4.04 F
6367 11053 0.320771 ACGTGCCAGAACCATGACTC 60.321 55.000 0.00 0.0 0.00 3.36 F
6916 11808 0.321021 AGCACTGCTCAGTTCAGGAG 59.679 55.000 0.00 0.0 40.20 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1960 0.323360 CATCCCCGTTGGTTGACCAT 60.323 55.000 3.28 0.0 46.97 3.55 R
2273 2478 1.741706 TCGTTCAGACTAACCGCTAGG 59.258 52.381 0.00 0.0 45.13 3.02 R
2936 3144 1.897398 GCGTGGGTGTTGATGACGAC 61.897 60.000 0.00 0.0 31.71 4.34 R
2957 3165 2.124570 GTGATGATGGGCAGCGGT 60.125 61.111 0.00 0.0 35.09 5.68 R
4195 6851 0.837272 GGTAGGATGCCAGCCAAGTA 59.163 55.000 0.01 0.0 42.29 2.24 R
4595 7251 2.925706 TGGCCAGGGTAGCGACAA 60.926 61.111 0.00 0.0 0.00 3.18 R
5305 9759 2.100989 AGACGGAGGGAGTATGTGAAC 58.899 52.381 0.00 0.0 0.00 3.18 R
6440 11126 0.668706 CTCTGAACTGCCTCCACACG 60.669 60.000 0.00 0.0 0.00 4.49 R
6978 11870 1.196808 CACCGAGATTCAACCAAACCG 59.803 52.381 0.00 0.0 0.00 4.44 R
7760 12655 1.166531 ACCTCTCAACAAACTGGCGC 61.167 55.000 0.00 0.0 0.00 6.53 R
8635 13544 0.038166 AGGAAAGAATGCCGCCTTCA 59.962 50.000 10.53 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.391736 GCTTGAAGAGACAACCATGAAGATG 60.392 44.000 0.00 0.00 0.00 2.90
38 39 3.679389 ACAACCATGAAGATGACTCCAC 58.321 45.455 0.00 0.00 0.00 4.02
99 100 2.097825 CAAAGAAGGGCTGCTTAGCAT 58.902 47.619 7.58 0.00 38.13 3.79
115 116 5.005107 GCTTAGCATGCTGTTTTCTAATTGC 59.995 40.000 30.42 10.92 0.00 3.56
163 164 9.819267 AAGAGTATTGTTAGTAATTAGTCTGCC 57.181 33.333 0.00 0.00 0.00 4.85
200 201 6.473455 CACTTTGAAACTCAGAAATGACAACC 59.527 38.462 0.00 0.00 0.00 3.77
222 223 3.424433 CGATAAGAACACCTTCAAACGGC 60.424 47.826 0.00 0.00 36.34 5.68
231 232 1.407437 CCTTCAAACGGCTAGCCAGAT 60.407 52.381 32.47 17.08 35.37 2.90
232 233 2.158957 CCTTCAAACGGCTAGCCAGATA 60.159 50.000 32.47 11.37 35.37 1.98
270 276 7.709149 TCATACATCACATAGACTGATAGGG 57.291 40.000 0.00 0.00 0.00 3.53
299 305 2.092429 TCTTGAGTTGCTTGGGTCTTGT 60.092 45.455 0.00 0.00 0.00 3.16
325 331 3.805066 TGGGAATCAGAACAATCACCA 57.195 42.857 0.00 0.00 0.00 4.17
333 339 4.522114 TCAGAACAATCACCAAGTCACAA 58.478 39.130 0.00 0.00 0.00 3.33
345 351 3.067461 CCAAGTCACAAAAACCATTCGGA 59.933 43.478 0.00 0.00 35.59 4.55
352 358 5.047660 TCACAAAAACCATTCGGAAATAGGG 60.048 40.000 10.63 6.06 35.59 3.53
356 362 4.586306 AACCATTCGGAAATAGGGTTCT 57.414 40.909 11.35 0.00 29.51 3.01
360 366 5.193679 CCATTCGGAAATAGGGTTCTCTTT 58.806 41.667 0.00 0.00 0.00 2.52
375 381 5.237561 GGTTCTCTTTCAAGAAACTCCTGAC 59.762 44.000 11.23 0.00 39.43 3.51
376 382 5.614324 TCTCTTTCAAGAAACTCCTGACA 57.386 39.130 0.00 0.00 34.03 3.58
389 403 3.327757 ACTCCTGACAGCCTGACAAATTA 59.672 43.478 0.00 0.00 0.00 1.40
408 422 1.134438 ACCTCACCCAAGAAGTCCCC 61.134 60.000 0.00 0.00 0.00 4.81
421 435 1.914764 GTCCCCGTGGGTCTGGTAA 60.915 63.158 3.83 0.00 44.74 2.85
423 437 1.002990 CCCCGTGGGTCTGGTAAAC 60.003 63.158 3.83 0.00 38.25 2.01
481 497 1.337167 GCCCCATCTGAAAAAGTGCAC 60.337 52.381 9.40 9.40 0.00 4.57
531 547 7.444792 GGCTTACAAAGATCATCATTCATCTCT 59.555 37.037 0.00 0.00 0.00 3.10
532 548 8.497554 GCTTACAAAGATCATCATTCATCTCTC 58.502 37.037 0.00 0.00 0.00 3.20
533 549 8.585189 TTACAAAGATCATCATTCATCTCTCG 57.415 34.615 0.00 0.00 0.00 4.04
534 550 5.466058 ACAAAGATCATCATTCATCTCTCGC 59.534 40.000 0.00 0.00 0.00 5.03
536 552 3.255395 AGATCATCATTCATCTCTCGCGT 59.745 43.478 5.77 0.00 0.00 6.01
537 553 3.443099 TCATCATTCATCTCTCGCGTT 57.557 42.857 5.77 0.00 0.00 4.84
539 555 4.932146 TCATCATTCATCTCTCGCGTTAA 58.068 39.130 5.77 0.00 0.00 2.01
540 556 5.348164 TCATCATTCATCTCTCGCGTTAAA 58.652 37.500 5.77 0.00 0.00 1.52
541 557 5.810074 TCATCATTCATCTCTCGCGTTAAAA 59.190 36.000 5.77 0.00 0.00 1.52
542 558 6.312672 TCATCATTCATCTCTCGCGTTAAAAA 59.687 34.615 5.77 0.00 0.00 1.94
565 581 5.824904 AAAAATCATCATTCTCCCGTCAG 57.175 39.130 0.00 0.00 0.00 3.51
566 582 4.760530 AAATCATCATTCTCCCGTCAGA 57.239 40.909 0.00 0.00 0.00 3.27
567 583 4.760530 AATCATCATTCTCCCGTCAGAA 57.239 40.909 0.00 0.00 36.82 3.02
568 584 4.760530 ATCATCATTCTCCCGTCAGAAA 57.239 40.909 0.00 0.00 35.99 2.52
569 585 4.551702 TCATCATTCTCCCGTCAGAAAA 57.448 40.909 0.00 0.00 35.99 2.29
570 586 4.905429 TCATCATTCTCCCGTCAGAAAAA 58.095 39.130 0.00 0.00 35.99 1.94
599 615 7.106890 AGATCATCATGAGGAATAGCATCAAG 58.893 38.462 14.88 0.00 41.13 3.02
600 616 5.557866 TCATCATGAGGAATAGCATCAAGG 58.442 41.667 7.78 0.00 41.13 3.61
601 617 5.072736 TCATCATGAGGAATAGCATCAAGGT 59.927 40.000 7.78 0.00 41.13 3.50
602 618 4.711399 TCATGAGGAATAGCATCAAGGTG 58.289 43.478 0.00 0.00 41.13 4.00
603 619 4.409901 TCATGAGGAATAGCATCAAGGTGA 59.590 41.667 0.00 0.00 41.13 4.02
604 620 4.842531 TGAGGAATAGCATCAAGGTGAA 57.157 40.909 0.00 0.00 33.80 3.18
605 621 4.774124 TGAGGAATAGCATCAAGGTGAAG 58.226 43.478 0.00 0.00 33.80 3.02
668 686 2.888834 TTGCCTCACTTTTCTTTGGC 57.111 45.000 0.00 0.00 40.62 4.52
669 687 1.774110 TGCCTCACTTTTCTTTGGCA 58.226 45.000 0.00 0.00 46.59 4.92
670 688 1.682854 TGCCTCACTTTTCTTTGGCAG 59.317 47.619 0.00 0.00 44.35 4.85
671 689 1.603931 GCCTCACTTTTCTTTGGCAGC 60.604 52.381 0.00 0.00 40.04 5.25
672 690 1.959282 CCTCACTTTTCTTTGGCAGCT 59.041 47.619 0.00 0.00 0.00 4.24
673 691 3.149196 CCTCACTTTTCTTTGGCAGCTA 58.851 45.455 0.00 0.00 0.00 3.32
674 692 3.760684 CCTCACTTTTCTTTGGCAGCTAT 59.239 43.478 0.00 0.00 0.00 2.97
675 693 4.219288 CCTCACTTTTCTTTGGCAGCTATT 59.781 41.667 0.00 0.00 0.00 1.73
676 694 5.279156 CCTCACTTTTCTTTGGCAGCTATTT 60.279 40.000 0.00 0.00 0.00 1.40
677 695 6.071952 CCTCACTTTTCTTTGGCAGCTATTTA 60.072 38.462 0.00 0.00 0.00 1.40
678 696 7.363268 CCTCACTTTTCTTTGGCAGCTATTTAT 60.363 37.037 0.00 0.00 0.00 1.40
679 697 7.895759 TCACTTTTCTTTGGCAGCTATTTATT 58.104 30.769 0.00 0.00 0.00 1.40
680 698 8.028938 TCACTTTTCTTTGGCAGCTATTTATTC 58.971 33.333 0.00 0.00 0.00 1.75
681 699 8.031277 CACTTTTCTTTGGCAGCTATTTATTCT 58.969 33.333 0.00 0.00 0.00 2.40
682 700 8.588472 ACTTTTCTTTGGCAGCTATTTATTCTT 58.412 29.630 0.00 0.00 0.00 2.52
683 701 9.428097 CTTTTCTTTGGCAGCTATTTATTCTTT 57.572 29.630 0.00 0.00 0.00 2.52
684 702 9.777297 TTTTCTTTGGCAGCTATTTATTCTTTT 57.223 25.926 0.00 0.00 0.00 2.27
685 703 9.777297 TTTCTTTGGCAGCTATTTATTCTTTTT 57.223 25.926 0.00 0.00 0.00 1.94
686 704 8.761575 TCTTTGGCAGCTATTTATTCTTTTTG 57.238 30.769 0.00 0.00 0.00 2.44
687 705 8.584157 TCTTTGGCAGCTATTTATTCTTTTTGA 58.416 29.630 0.00 0.00 0.00 2.69
688 706 8.761575 TTTGGCAGCTATTTATTCTTTTTGAG 57.238 30.769 0.00 0.00 0.00 3.02
689 707 7.701539 TGGCAGCTATTTATTCTTTTTGAGA 57.298 32.000 0.00 0.00 0.00 3.27
691 709 8.028938 TGGCAGCTATTTATTCTTTTTGAGAAC 58.971 33.333 0.00 0.00 46.66 3.01
729 747 1.262417 GTCGTGACTCGTGACAGTGTA 59.738 52.381 0.00 0.00 40.80 2.90
730 748 1.941975 TCGTGACTCGTGACAGTGTAA 59.058 47.619 0.00 0.00 40.80 2.41
815 843 4.736896 GTCCGACCGTGGTCTGCC 62.737 72.222 16.51 0.00 42.54 4.85
930 959 1.604378 GAGCCAAGGAAGCAGCCTA 59.396 57.895 0.00 0.00 37.26 3.93
956 1003 4.954970 ACAGGCGGCAACACAGGG 62.955 66.667 13.08 0.00 0.00 4.45
1065 1126 2.203788 TCTCCGGCTTCCCACTGT 60.204 61.111 0.00 0.00 0.00 3.55
1126 1187 2.762043 GGGCTCCTCGCTTCCTCT 60.762 66.667 0.00 0.00 39.13 3.69
1131 1192 4.560856 CCTCGCTTCCTCTCGCCG 62.561 72.222 0.00 0.00 0.00 6.46
1169 1234 3.335579 GGTAACGAATTGCCTTCTGTCT 58.664 45.455 0.00 0.00 37.59 3.41
1224 1290 1.686110 GATGTGGGGGAGGTCTCGT 60.686 63.158 0.00 0.00 0.00 4.18
1235 1301 2.434359 GTCTCGTTTCCCCTGCGG 60.434 66.667 0.00 0.00 0.00 5.69
1310 1386 2.426023 GACCTGCACCGTTGGAGT 59.574 61.111 0.03 0.00 39.52 3.85
1375 1452 7.453752 TCTTTATTAGGTTATAGGATCGGCAGT 59.546 37.037 0.00 0.00 0.00 4.40
1376 1453 7.549147 TTATTAGGTTATAGGATCGGCAGTT 57.451 36.000 0.00 0.00 0.00 3.16
1393 1566 1.071228 AGTTCGGGGTCTTTAAACGCT 59.929 47.619 0.00 0.00 32.99 5.07
1485 1662 4.759516 TGGTTTGGAGAATTTAACTCGC 57.240 40.909 0.00 0.00 35.49 5.03
1502 1679 5.086104 ACTCGCTGGACAGTTATTTATGT 57.914 39.130 0.82 0.00 0.00 2.29
1503 1680 5.488341 ACTCGCTGGACAGTTATTTATGTT 58.512 37.500 0.82 0.00 0.00 2.71
1521 1716 1.199097 GTTGCTTACCCACGTTCATGG 59.801 52.381 0.00 0.00 39.71 3.66
1559 1754 4.518249 CCCTACAAAGGTGAAGAATCTCC 58.482 47.826 0.00 0.00 41.89 3.71
1778 1982 0.034477 GTCAACCAACGGGGATGGAT 60.034 55.000 2.06 0.00 39.78 3.41
1785 1989 2.092646 CCAACGGGGATGGATGTAAAGA 60.093 50.000 0.00 0.00 40.56 2.52
1799 2003 9.880157 ATGGATGTAAAGAGGATTGAAATTTTG 57.120 29.630 0.00 0.00 0.00 2.44
1837 2041 9.871238 TCTAGAATAGAACAAACAAGTATGACC 57.129 33.333 0.00 0.00 46.47 4.02
1860 2064 5.107182 CCTGCTCTCGACATAAATGCTTATG 60.107 44.000 4.58 4.58 46.75 1.90
1887 2091 3.698040 CCTTAATTCCTGCTGATGCTGTT 59.302 43.478 0.00 0.00 40.48 3.16
1901 2105 4.401837 TGATGCTGTTATGCAAATAAGCCA 59.598 37.500 11.00 2.41 46.61 4.75
1909 2113 3.696281 TGCAAATAAGCCATCATGACG 57.304 42.857 0.00 0.00 0.00 4.35
1926 2130 2.223502 TGACGGATAAGTGAGCGCTTAG 60.224 50.000 13.26 0.00 34.83 2.18
1930 2134 3.617263 CGGATAAGTGAGCGCTTAGTTTT 59.383 43.478 25.01 18.14 34.83 2.43
2081 2285 3.515562 AGATCAGGATTTCTATCGCCCT 58.484 45.455 0.00 0.00 0.00 5.19
2082 2286 4.678256 AGATCAGGATTTCTATCGCCCTA 58.322 43.478 0.00 0.00 0.00 3.53
2189 2394 5.309323 TGTTAACTTGATTATGCACTGCC 57.691 39.130 7.22 0.00 0.00 4.85
2214 2419 5.182001 AGCTACTGCAGTCAAAATAGGTTTG 59.818 40.000 25.56 0.00 43.87 2.93
2384 2589 5.520748 TCTTTATGCCCTTTCTTCCTCTT 57.479 39.130 0.00 0.00 0.00 2.85
2475 2680 4.870123 TGTAATTTCTGTTGCCTGCAAT 57.130 36.364 7.94 0.00 38.28 3.56
2476 2681 5.212532 TGTAATTTCTGTTGCCTGCAATT 57.787 34.783 7.94 0.00 38.28 2.32
2477 2682 5.609423 TGTAATTTCTGTTGCCTGCAATTT 58.391 33.333 7.94 0.00 38.28 1.82
2680 2885 9.902196 GAGTCAAGTAAACCTCTCTATATAAGC 57.098 37.037 0.00 0.00 0.00 3.09
2735 2943 4.858935 GCAATCATAATTTGCTCGGCTTA 58.141 39.130 1.36 0.00 44.71 3.09
2936 3144 1.678627 AGAGACTCGGGTTCGATCATG 59.321 52.381 0.00 0.00 45.04 3.07
2957 3165 1.599518 GTCATCAACACCCACGCCA 60.600 57.895 0.00 0.00 0.00 5.69
2977 3185 2.475466 CGCTGCCCATCATCACCAC 61.475 63.158 0.00 0.00 0.00 4.16
2978 3186 2.123428 GCTGCCCATCATCACCACC 61.123 63.158 0.00 0.00 0.00 4.61
2979 3187 1.820906 CTGCCCATCATCACCACCG 60.821 63.158 0.00 0.00 0.00 4.94
2980 3188 3.211963 GCCCATCATCACCACCGC 61.212 66.667 0.00 0.00 0.00 5.68
3119 3327 2.745308 CCGTCCAGGGCATCCATCA 61.745 63.158 0.00 0.00 35.97 3.07
3129 3337 0.471617 GCATCCATCAGTACCTGGCT 59.528 55.000 0.00 0.00 32.30 4.75
3252 3460 4.832608 CCGTTCTAGGCGGGGCAC 62.833 72.222 15.74 0.00 44.98 5.01
3304 3512 3.145551 CCGGGTCCTCGGTACCAG 61.146 72.222 13.54 8.44 44.60 4.00
3305 3513 3.834799 CGGGTCCTCGGTACCAGC 61.835 72.222 13.54 1.31 38.87 4.85
3306 3514 3.834799 GGGTCCTCGGTACCAGCG 61.835 72.222 13.54 0.00 38.87 5.18
3307 3515 3.834799 GGTCCTCGGTACCAGCGG 61.835 72.222 13.54 9.37 39.89 5.52
3308 3516 4.509737 GTCCTCGGTACCAGCGGC 62.510 72.222 13.54 0.00 39.89 6.53
3311 3519 3.900892 CTCGGTACCAGCGGCGAT 61.901 66.667 12.98 0.00 39.89 4.58
3312 3520 3.825833 CTCGGTACCAGCGGCGATC 62.826 68.421 12.98 0.00 39.89 3.69
3313 3521 4.201679 CGGTACCAGCGGCGATCA 62.202 66.667 12.98 0.00 35.16 2.92
3314 3522 2.585247 GGTACCAGCGGCGATCAC 60.585 66.667 12.98 1.13 0.00 3.06
3315 3523 2.585247 GTACCAGCGGCGATCACC 60.585 66.667 12.98 0.00 0.00 4.02
3325 3533 4.626081 CGATCACCGGGGCCCATC 62.626 72.222 26.86 16.51 33.91 3.51
3326 3534 4.271016 GATCACCGGGGCCCATCC 62.271 72.222 26.86 5.04 0.00 3.51
3333 3541 4.851179 GGGGCCCATCCGTCGTTC 62.851 72.222 26.86 0.00 34.94 3.95
3334 3542 4.851179 GGGCCCATCCGTCGTTCC 62.851 72.222 19.95 0.00 34.94 3.62
3335 3543 4.090588 GGCCCATCCGTCGTTCCA 62.091 66.667 0.00 0.00 0.00 3.53
3336 3544 2.511600 GCCCATCCGTCGTTCCAG 60.512 66.667 0.00 0.00 0.00 3.86
3337 3545 2.511600 CCCATCCGTCGTTCCAGC 60.512 66.667 0.00 0.00 0.00 4.85
3338 3546 2.511600 CCATCCGTCGTTCCAGCC 60.512 66.667 0.00 0.00 0.00 4.85
3339 3547 2.885644 CATCCGTCGTTCCAGCCG 60.886 66.667 0.00 0.00 0.00 5.52
3340 3548 4.814294 ATCCGTCGTTCCAGCCGC 62.814 66.667 0.00 0.00 0.00 6.53
5077 9531 9.902196 GAGTCAAGTAAACCTCTCTATATAAGC 57.098 37.037 0.00 0.00 0.00 3.09
5276 9730 1.687368 CCCTACAACCTACGCCCTAGT 60.687 57.143 0.00 0.00 0.00 2.57
5305 9759 0.466124 GCCCTAGCTCCTACCAACTG 59.534 60.000 0.00 0.00 35.50 3.16
5495 9949 8.225777 GGTTAGTTAAATTGTCACCTAGAAACG 58.774 37.037 0.00 0.00 0.00 3.60
5519 9973 2.361610 CGCCCTTTGCACCCAGAT 60.362 61.111 0.00 0.00 41.33 2.90
5544 9998 5.845065 GGAGGGAGTACTATTTATGAAGGGT 59.155 44.000 0.00 0.00 0.00 4.34
5552 10006 5.681639 ACTATTTATGAAGGGTAGTGTGGC 58.318 41.667 0.00 0.00 0.00 5.01
5553 10007 4.584638 ATTTATGAAGGGTAGTGTGGCA 57.415 40.909 0.00 0.00 0.00 4.92
5566 10038 0.240145 TGTGGCAACTAGTCGTCGAG 59.760 55.000 0.00 0.00 37.61 4.04
5568 10040 0.520404 TGGCAACTAGTCGTCGAGTC 59.480 55.000 5.70 0.00 37.61 3.36
5570 10042 0.441533 GCAACTAGTCGTCGAGTCGA 59.558 55.000 12.09 12.09 37.51 4.20
6287 10973 3.964688 TCAAGAGTCACTAACCCAGAACA 59.035 43.478 0.00 0.00 0.00 3.18
6291 10977 4.409247 AGAGTCACTAACCCAGAACAACTT 59.591 41.667 0.00 0.00 0.00 2.66
6367 11053 0.320771 ACGTGCCAGAACCATGACTC 60.321 55.000 0.00 0.00 0.00 3.36
6390 11076 4.279922 CGGTTTCAAGGTCTTATGGGTTTT 59.720 41.667 0.00 0.00 0.00 2.43
6405 11091 4.432316 TGGGTTTTAACTCTAGGCTACCT 58.568 43.478 0.00 0.00 37.71 3.08
6432 11118 2.430332 TGTTTGGGACTGAAAGGCTTTG 59.570 45.455 18.79 6.49 46.21 2.77
6440 11126 4.105486 GACTGAAAGGCTTTGTTGTTGTC 58.895 43.478 18.79 11.39 40.68 3.18
6492 11383 6.691818 GCTCAAGAGAAGAAATGTGCAATATG 59.308 38.462 0.32 0.00 33.72 1.78
6544 11435 4.246458 GTGACTCCACTTCATGTTCCTAC 58.754 47.826 0.00 0.00 40.10 3.18
6560 11451 7.120923 TGTTCCTACTACCTATTCATGAACC 57.879 40.000 11.07 0.00 31.08 3.62
6578 11469 8.961634 TCATGAACCGTATATTTTTCATTTCCA 58.038 29.630 0.00 0.00 36.72 3.53
6581 11472 9.184523 TGAACCGTATATTTTTCATTTCCATCT 57.815 29.630 0.00 0.00 0.00 2.90
6607 11498 1.489481 TGTTTTGCCAATCACCACCA 58.511 45.000 0.00 0.00 0.00 4.17
6619 11510 2.382882 TCACCACCATTTTTGTGAGCA 58.617 42.857 0.00 0.00 35.74 4.26
6640 11531 4.265893 CAAGTAGTCTCCTCTAGAGCACA 58.734 47.826 14.73 0.00 42.90 4.57
6729 11620 0.467844 TTGGCATGGCACTCTGTTGT 60.468 50.000 23.26 0.00 0.00 3.32
6823 11714 4.162320 TCCCAGTCCATAGAACATTGACTC 59.838 45.833 0.00 0.00 34.21 3.36
6916 11808 0.321021 AGCACTGCTCAGTTCAGGAG 59.679 55.000 0.00 0.00 40.20 3.69
6978 11870 5.893897 AGCTTTCCACTTGATTCTTGATC 57.106 39.130 0.00 0.00 35.21 2.92
7040 11932 6.600427 CCAACCACCCTAGTTAACGAAATATT 59.400 38.462 0.00 0.00 0.00 1.28
7068 11960 2.772568 TTTCAAGTCATGTTGTGCGG 57.227 45.000 0.00 0.00 0.00 5.69
7150 12045 7.286316 CCATGCTTTATCTTTACTCCTTTCCAT 59.714 37.037 0.00 0.00 0.00 3.41
7178 12073 7.640597 TTATATGTACATCCGAGGATACAGG 57.359 40.000 12.68 1.06 41.41 4.00
7343 12238 1.986378 CCTCTTGTCGCACTAACTTCG 59.014 52.381 0.00 0.00 0.00 3.79
7548 12443 5.088026 GAGTATAGGTGGGCCTCTTAGAAT 58.912 45.833 4.53 0.00 45.64 2.40
7575 12470 9.810545 TTTTCAGTAACTTCCTTGGTAAATTTG 57.189 29.630 0.00 0.00 0.00 2.32
7577 12472 7.291566 TCAGTAACTTCCTTGGTAAATTTGGA 58.708 34.615 0.00 0.00 0.00 3.53
7578 12473 7.947890 TCAGTAACTTCCTTGGTAAATTTGGAT 59.052 33.333 0.00 0.00 0.00 3.41
7701 12596 2.158957 TCGTCTTGGGCTCCATATTGTC 60.159 50.000 0.00 0.00 31.53 3.18
7865 12760 3.201290 GCTCAGTATTGTGCTGCACTAT 58.799 45.455 30.43 28.81 39.94 2.12
7934 12829 0.392461 TCGGGTACAAAGCATCTGGC 60.392 55.000 0.00 0.00 45.30 4.85
8035 12930 6.210185 GCAAAGGGATCTTATAATGGAGCAAT 59.790 38.462 0.00 0.00 32.01 3.56
8040 12935 6.297010 GGGATCTTATAATGGAGCAATACCCA 60.297 42.308 0.00 0.00 36.79 4.51
8045 12940 0.107214 ATGGAGCAATACCCACCGTG 60.107 55.000 0.00 0.00 34.92 4.94
8117 13012 3.118920 TGTCGGTCGGTGACATTGAATAT 60.119 43.478 0.00 0.00 41.20 1.28
8168 13063 3.062763 CCTTGTGCTAACAGTGAGTGAG 58.937 50.000 0.00 0.00 37.67 3.51
8304 13199 0.040942 ATGCAGGGTGGCCATTAACA 59.959 50.000 9.72 4.63 0.00 2.41
8366 13261 4.802876 GTCACCAGACACTTTTCAAGAG 57.197 45.455 0.00 0.00 44.34 2.85
8376 13271 7.698130 CAGACACTTTTCAAGAGGTTAAACAAG 59.302 37.037 0.00 0.00 0.00 3.16
8508 13412 5.663106 TGTTCCCTAGATGGAGGATATATGC 59.337 44.000 0.00 0.00 39.15 3.14
8561 13470 1.933853 GGTTCATCAATCCGAAGTCCG 59.066 52.381 0.00 0.00 38.18 4.79
8635 13544 2.042831 GCAAGAGAAGCACGGGCAT 61.043 57.895 14.57 0.00 44.61 4.40
8677 13586 4.278170 TGTGGACTGGCAAATAAAGAGTTG 59.722 41.667 0.00 0.00 33.74 3.16
8680 13589 4.378459 GGACTGGCAAATAAAGAGTTGACG 60.378 45.833 0.00 0.00 41.76 4.35
8688 13597 0.602905 AAAGAGTTGACGGGCTTCGG 60.603 55.000 5.17 0.00 44.45 4.30
8869 13778 7.597743 AGGACGATACTTGTTTGTTAGTACTTG 59.402 37.037 0.00 0.00 30.24 3.16
8903 13812 8.742554 CTTAACGATTAAGCAGGTTTTGATTT 57.257 30.769 0.00 0.00 36.64 2.17
8908 13817 7.083858 CGATTAAGCAGGTTTTGATTTCAAGA 58.916 34.615 0.00 0.00 36.64 3.02
8964 13873 1.597742 TGTGAGCAGCTGGAAACTTC 58.402 50.000 17.12 0.00 0.00 3.01
8990 13899 5.756195 TGCCATCTGAATATGTTAGTTGC 57.244 39.130 0.00 0.00 0.00 4.17
9001 13910 3.988379 TGTTAGTTGCAAGCAGAAAGG 57.012 42.857 0.00 0.00 0.00 3.11
9031 13940 6.585322 AGTCTAAGATTTGTTGTACGCTACAC 59.415 38.462 0.00 0.00 38.63 2.90
9125 14035 1.071699 TCAAGGGTGTAGGTGCTTGTC 59.928 52.381 0.00 0.00 0.00 3.18
9137 14047 2.327343 GCTTGTCAGCGTGCCATCA 61.327 57.895 0.00 0.00 35.91 3.07
9143 14053 1.973281 CAGCGTGCCATCAAGGGTT 60.973 57.895 0.00 0.00 38.09 4.11
9146 14056 0.663153 GCGTGCCATCAAGGGTTATC 59.337 55.000 0.00 0.00 38.09 1.75
9147 14057 0.937304 CGTGCCATCAAGGGTTATCG 59.063 55.000 0.00 0.00 38.09 2.92
9148 14058 1.742411 CGTGCCATCAAGGGTTATCGT 60.742 52.381 0.00 0.00 38.09 3.73
9149 14059 2.365582 GTGCCATCAAGGGTTATCGTT 58.634 47.619 0.00 0.00 38.09 3.85
9150 14060 2.752903 GTGCCATCAAGGGTTATCGTTT 59.247 45.455 0.00 0.00 38.09 3.60
9151 14061 2.752354 TGCCATCAAGGGTTATCGTTTG 59.248 45.455 0.00 0.00 38.09 2.93
9152 14062 2.099098 GCCATCAAGGGTTATCGTTTGG 59.901 50.000 0.00 0.00 38.09 3.28
9153 14063 3.352648 CCATCAAGGGTTATCGTTTGGT 58.647 45.455 0.00 0.00 0.00 3.67
9154 14064 4.519213 CCATCAAGGGTTATCGTTTGGTA 58.481 43.478 0.00 0.00 0.00 3.25
9155 14065 4.944930 CCATCAAGGGTTATCGTTTGGTAA 59.055 41.667 0.00 0.00 0.00 2.85
9156 14066 5.416326 CCATCAAGGGTTATCGTTTGGTAAA 59.584 40.000 0.00 0.00 0.00 2.01
9157 14067 6.096282 CCATCAAGGGTTATCGTTTGGTAAAT 59.904 38.462 0.00 0.00 0.00 1.40
9158 14068 7.363443 CCATCAAGGGTTATCGTTTGGTAAATT 60.363 37.037 0.00 0.00 0.00 1.82
9159 14069 7.148355 TCAAGGGTTATCGTTTGGTAAATTC 57.852 36.000 0.00 0.00 0.00 2.17
9160 14070 6.943718 TCAAGGGTTATCGTTTGGTAAATTCT 59.056 34.615 0.00 0.00 0.00 2.40
9161 14071 6.753107 AGGGTTATCGTTTGGTAAATTCTG 57.247 37.500 0.00 0.00 0.00 3.02
9162 14072 6.243148 AGGGTTATCGTTTGGTAAATTCTGT 58.757 36.000 0.00 0.00 0.00 3.41
9163 14073 7.396418 AGGGTTATCGTTTGGTAAATTCTGTA 58.604 34.615 0.00 0.00 0.00 2.74
9164 14074 7.884354 AGGGTTATCGTTTGGTAAATTCTGTAA 59.116 33.333 0.00 0.00 0.00 2.41
9165 14075 8.513774 GGGTTATCGTTTGGTAAATTCTGTAAA 58.486 33.333 0.00 0.00 0.00 2.01
9166 14076 9.896263 GGTTATCGTTTGGTAAATTCTGTAAAA 57.104 29.630 0.00 0.00 0.00 1.52
9169 14079 7.917720 TCGTTTGGTAAATTCTGTAAAAAGC 57.082 32.000 0.00 0.00 0.00 3.51
9170 14080 6.919115 TCGTTTGGTAAATTCTGTAAAAAGCC 59.081 34.615 0.00 0.00 0.00 4.35
9171 14081 6.144886 CGTTTGGTAAATTCTGTAAAAAGCCC 59.855 38.462 0.00 0.00 0.00 5.19
9172 14082 5.379732 TGGTAAATTCTGTAAAAAGCCCG 57.620 39.130 0.00 0.00 0.00 6.13
9173 14083 4.828387 TGGTAAATTCTGTAAAAAGCCCGT 59.172 37.500 0.00 0.00 0.00 5.28
9174 14084 5.158494 GGTAAATTCTGTAAAAAGCCCGTG 58.842 41.667 0.00 0.00 0.00 4.94
9175 14085 4.929819 AAATTCTGTAAAAAGCCCGTGT 57.070 36.364 0.00 0.00 0.00 4.49
9176 14086 3.915437 ATTCTGTAAAAAGCCCGTGTG 57.085 42.857 0.00 0.00 0.00 3.82
9177 14087 2.335316 TCTGTAAAAAGCCCGTGTGT 57.665 45.000 0.00 0.00 0.00 3.72
9178 14088 1.944024 TCTGTAAAAAGCCCGTGTGTG 59.056 47.619 0.00 0.00 0.00 3.82
9179 14089 1.673920 CTGTAAAAAGCCCGTGTGTGT 59.326 47.619 0.00 0.00 0.00 3.72
9180 14090 1.402259 TGTAAAAAGCCCGTGTGTGTG 59.598 47.619 0.00 0.00 0.00 3.82
9181 14091 1.025812 TAAAAAGCCCGTGTGTGTGG 58.974 50.000 0.00 0.00 0.00 4.17
9182 14092 0.968393 AAAAAGCCCGTGTGTGTGGT 60.968 50.000 0.00 0.00 0.00 4.16
9183 14093 0.107116 AAAAGCCCGTGTGTGTGGTA 60.107 50.000 0.00 0.00 0.00 3.25
9184 14094 0.109723 AAAGCCCGTGTGTGTGGTAT 59.890 50.000 0.00 0.00 0.00 2.73
9185 14095 0.109723 AAGCCCGTGTGTGTGGTATT 59.890 50.000 0.00 0.00 0.00 1.89
9186 14096 0.978151 AGCCCGTGTGTGTGGTATTA 59.022 50.000 0.00 0.00 0.00 0.98
9187 14097 1.557832 AGCCCGTGTGTGTGGTATTAT 59.442 47.619 0.00 0.00 0.00 1.28
9188 14098 2.026636 AGCCCGTGTGTGTGGTATTATT 60.027 45.455 0.00 0.00 0.00 1.40
9189 14099 2.096819 GCCCGTGTGTGTGGTATTATTG 59.903 50.000 0.00 0.00 0.00 1.90
9190 14100 2.680841 CCCGTGTGTGTGGTATTATTGG 59.319 50.000 0.00 0.00 0.00 3.16
9191 14101 3.340034 CCGTGTGTGTGGTATTATTGGT 58.660 45.455 0.00 0.00 0.00 3.67
9192 14102 3.126171 CCGTGTGTGTGGTATTATTGGTG 59.874 47.826 0.00 0.00 0.00 4.17
9193 14103 3.997681 CGTGTGTGTGGTATTATTGGTGA 59.002 43.478 0.00 0.00 0.00 4.02
9194 14104 4.452795 CGTGTGTGTGGTATTATTGGTGAA 59.547 41.667 0.00 0.00 0.00 3.18
9230 14140 2.626780 GGGACGGCAAAGTTGAGGC 61.627 63.158 0.00 0.00 0.00 4.70
9337 14252 0.037419 GCAACAAATGGCATCCGGTT 60.037 50.000 0.00 2.95 0.00 4.44
9348 14263 0.179073 CATCCGGTTACCTGCCTGAG 60.179 60.000 0.00 0.00 0.00 3.35
9364 14279 0.179121 TGAGCGTATAGTTGCCACGG 60.179 55.000 0.00 0.00 36.23 4.94
9382 14297 3.679980 CACGGACATCTTAGTTGTGAAGG 59.320 47.826 0.18 0.00 32.96 3.46
9383 14298 3.323979 ACGGACATCTTAGTTGTGAAGGT 59.676 43.478 0.18 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.068472 ACGATCGTGTTGAGTGGAGTC 60.068 52.381 22.06 0.00 0.00 3.36
38 39 4.647291 AAAAGCTTACGATCGTGTTGAG 57.353 40.909 30.23 20.86 0.00 3.02
99 100 2.033927 TGCACGCAATTAGAAAACAGCA 59.966 40.909 0.00 0.00 0.00 4.41
115 116 7.188834 TCTTATTGCTTATGAATCTTTGCACG 58.811 34.615 0.00 0.00 0.00 5.34
149 150 3.450904 TGTCCCTGGCAGACTAATTACT 58.549 45.455 17.94 0.00 35.21 2.24
157 158 0.465460 TGTGTTTGTCCCTGGCAGAC 60.465 55.000 17.94 8.09 34.72 3.51
163 164 4.082245 AGTTTCAAAGTGTGTTTGTCCCTG 60.082 41.667 0.00 0.00 0.00 4.45
200 201 3.424433 GCCGTTTGAAGGTGTTCTTATCG 60.424 47.826 0.00 0.00 35.50 2.92
222 223 3.777106 TGCCTCCAAATATCTGGCTAG 57.223 47.619 0.00 0.00 43.57 3.42
231 232 6.318648 GTGATGTATGAAGTTGCCTCCAAATA 59.681 38.462 0.00 0.00 31.68 1.40
232 233 5.126061 GTGATGTATGAAGTTGCCTCCAAAT 59.874 40.000 0.00 0.00 31.68 2.32
244 245 8.249638 CCCTATCAGTCTATGTGATGTATGAAG 58.750 40.741 0.00 0.00 35.39 3.02
247 248 6.336566 GCCCTATCAGTCTATGTGATGTATG 58.663 44.000 0.00 0.00 35.39 2.39
253 254 2.158519 TCCGCCCTATCAGTCTATGTGA 60.159 50.000 0.00 0.00 0.00 3.58
270 276 1.230324 AGCAACTCAAGAACTTCCGC 58.770 50.000 0.00 0.00 0.00 5.54
299 305 5.241506 GTGATTGTTCTGATTCCCAAAGTCA 59.758 40.000 0.00 0.00 0.00 3.41
325 331 4.993029 TTCCGAATGGTTTTTGTGACTT 57.007 36.364 0.00 0.00 36.30 3.01
333 339 5.330233 AGAACCCTATTTCCGAATGGTTTT 58.670 37.500 0.00 0.00 33.83 2.43
345 351 7.448777 GGAGTTTCTTGAAAGAGAACCCTATTT 59.551 37.037 11.28 0.00 36.62 1.40
352 358 5.817816 TGTCAGGAGTTTCTTGAAAGAGAAC 59.182 40.000 0.00 8.70 34.18 3.01
356 362 4.130118 GCTGTCAGGAGTTTCTTGAAAGA 58.870 43.478 11.32 0.00 39.43 2.52
360 366 2.050144 AGGCTGTCAGGAGTTTCTTGA 58.950 47.619 1.14 0.00 29.52 3.02
375 381 2.749621 GGTGAGGTAATTTGTCAGGCTG 59.250 50.000 8.58 8.58 0.00 4.85
376 382 2.290960 GGGTGAGGTAATTTGTCAGGCT 60.291 50.000 0.00 0.00 0.00 4.58
389 403 1.134438 GGGGACTTCTTGGGTGAGGT 61.134 60.000 0.00 0.00 0.00 3.85
408 422 0.599558 TCTCGTTTACCAGACCCACG 59.400 55.000 0.00 0.00 0.00 4.94
421 435 1.892209 AATGGTTTTCGGCTCTCGTT 58.108 45.000 0.00 0.00 40.32 3.85
423 437 1.135689 CCAAATGGTTTTCGGCTCTCG 60.136 52.381 0.00 0.00 40.90 4.04
481 497 6.488006 CCATACACTAATGAGGAAATCAAGGG 59.512 42.308 0.00 0.00 42.53 3.95
543 559 5.500234 TCTGACGGGAGAATGATGATTTTT 58.500 37.500 0.00 0.00 0.00 1.94
544 560 5.102953 TCTGACGGGAGAATGATGATTTT 57.897 39.130 0.00 0.00 0.00 1.82
545 561 4.760530 TCTGACGGGAGAATGATGATTT 57.239 40.909 0.00 0.00 0.00 2.17
546 562 4.760530 TTCTGACGGGAGAATGATGATT 57.239 40.909 0.00 0.00 0.00 2.57
547 563 4.760530 TTTCTGACGGGAGAATGATGAT 57.239 40.909 0.00 0.00 31.98 2.45
548 564 4.551702 TTTTCTGACGGGAGAATGATGA 57.448 40.909 0.00 0.00 31.98 2.92
568 584 7.997223 TGCTATTCCTCATGATGATCTCTTTTT 59.003 33.333 1.22 0.00 0.00 1.94
569 585 7.515586 TGCTATTCCTCATGATGATCTCTTTT 58.484 34.615 1.22 0.00 0.00 2.27
570 586 7.075851 TGCTATTCCTCATGATGATCTCTTT 57.924 36.000 1.22 0.00 0.00 2.52
571 587 6.683312 TGCTATTCCTCATGATGATCTCTT 57.317 37.500 1.22 0.00 0.00 2.85
572 588 6.440965 TGATGCTATTCCTCATGATGATCTCT 59.559 38.462 1.22 0.00 0.00 3.10
573 589 6.641474 TGATGCTATTCCTCATGATGATCTC 58.359 40.000 1.22 0.00 0.00 2.75
574 590 6.622427 TGATGCTATTCCTCATGATGATCT 57.378 37.500 1.22 0.00 0.00 2.75
575 591 6.316640 CCTTGATGCTATTCCTCATGATGATC 59.683 42.308 1.22 0.00 0.00 2.92
576 592 6.181190 CCTTGATGCTATTCCTCATGATGAT 58.819 40.000 1.22 0.00 0.00 2.45
577 593 5.072736 ACCTTGATGCTATTCCTCATGATGA 59.927 40.000 0.00 0.00 0.00 2.92
578 594 5.181433 CACCTTGATGCTATTCCTCATGATG 59.819 44.000 0.00 0.00 0.00 3.07
579 595 5.072736 TCACCTTGATGCTATTCCTCATGAT 59.927 40.000 0.00 0.00 0.00 2.45
580 596 4.409901 TCACCTTGATGCTATTCCTCATGA 59.590 41.667 0.00 0.00 0.00 3.07
581 597 4.711399 TCACCTTGATGCTATTCCTCATG 58.289 43.478 0.00 0.00 0.00 3.07
582 598 5.374921 CTTCACCTTGATGCTATTCCTCAT 58.625 41.667 0.00 0.00 0.00 2.90
599 615 1.620819 TCTTGCTCTCTCACCTTCACC 59.379 52.381 0.00 0.00 0.00 4.02
600 616 2.560542 TCTCTTGCTCTCTCACCTTCAC 59.439 50.000 0.00 0.00 0.00 3.18
601 617 2.881734 TCTCTTGCTCTCTCACCTTCA 58.118 47.619 0.00 0.00 0.00 3.02
602 618 4.081752 TCAATCTCTTGCTCTCTCACCTTC 60.082 45.833 0.00 0.00 32.11 3.46
603 619 3.837146 TCAATCTCTTGCTCTCTCACCTT 59.163 43.478 0.00 0.00 32.11 3.50
604 620 3.439154 TCAATCTCTTGCTCTCTCACCT 58.561 45.455 0.00 0.00 32.11 4.00
605 621 3.446873 TCTCAATCTCTTGCTCTCTCACC 59.553 47.826 0.00 0.00 32.11 4.02
662 680 8.761575 TCAAAAAGAATAAATAGCTGCCAAAG 57.238 30.769 0.00 0.00 0.00 2.77
663 681 8.584157 TCTCAAAAAGAATAAATAGCTGCCAAA 58.416 29.630 0.00 0.00 0.00 3.28
664 682 8.121305 TCTCAAAAAGAATAAATAGCTGCCAA 57.879 30.769 0.00 0.00 0.00 4.52
665 683 7.701539 TCTCAAAAAGAATAAATAGCTGCCA 57.298 32.000 0.00 0.00 0.00 4.92
666 684 8.246871 AGTTCTCAAAAAGAATAAATAGCTGCC 58.753 33.333 0.00 0.00 45.57 4.85
667 685 9.631452 AAGTTCTCAAAAAGAATAAATAGCTGC 57.369 29.630 0.00 0.00 45.57 5.25
673 691 9.612066 TGCCAAAAGTTCTCAAAAAGAATAAAT 57.388 25.926 0.00 0.00 45.57 1.40
674 692 9.097257 CTGCCAAAAGTTCTCAAAAAGAATAAA 57.903 29.630 0.00 0.00 45.57 1.40
675 693 7.224557 GCTGCCAAAAGTTCTCAAAAAGAATAA 59.775 33.333 0.00 0.00 45.57 1.40
676 694 6.701400 GCTGCCAAAAGTTCTCAAAAAGAATA 59.299 34.615 0.00 0.00 45.57 1.75
677 695 5.525012 GCTGCCAAAAGTTCTCAAAAAGAAT 59.475 36.000 0.00 0.00 45.57 2.40
678 696 4.869861 GCTGCCAAAAGTTCTCAAAAAGAA 59.130 37.500 0.00 0.00 41.81 2.52
679 697 4.160252 AGCTGCCAAAAGTTCTCAAAAAGA 59.840 37.500 0.00 0.00 0.00 2.52
680 698 4.436332 AGCTGCCAAAAGTTCTCAAAAAG 58.564 39.130 0.00 0.00 0.00 2.27
681 699 4.470334 AGCTGCCAAAAGTTCTCAAAAA 57.530 36.364 0.00 0.00 0.00 1.94
682 700 5.789643 ATAGCTGCCAAAAGTTCTCAAAA 57.210 34.783 0.00 0.00 0.00 2.44
683 701 6.003950 ACTATAGCTGCCAAAAGTTCTCAAA 58.996 36.000 0.00 0.00 0.00 2.69
684 702 5.560724 ACTATAGCTGCCAAAAGTTCTCAA 58.439 37.500 0.00 0.00 0.00 3.02
685 703 5.165961 ACTATAGCTGCCAAAAGTTCTCA 57.834 39.130 0.00 0.00 0.00 3.27
686 704 6.342111 ACTACTATAGCTGCCAAAAGTTCTC 58.658 40.000 0.00 0.00 0.00 2.87
687 705 6.301169 ACTACTATAGCTGCCAAAAGTTCT 57.699 37.500 0.00 0.00 0.00 3.01
688 706 5.232414 CGACTACTATAGCTGCCAAAAGTTC 59.768 44.000 0.00 0.00 0.00 3.01
689 707 5.109903 CGACTACTATAGCTGCCAAAAGTT 58.890 41.667 0.00 0.00 0.00 2.66
690 708 4.159879 ACGACTACTATAGCTGCCAAAAGT 59.840 41.667 0.00 0.00 0.00 2.66
691 709 4.504461 CACGACTACTATAGCTGCCAAAAG 59.496 45.833 0.00 0.00 0.00 2.27
748 766 0.526739 TCGAATGTATGTGTCCGGCG 60.527 55.000 0.00 0.00 0.00 6.46
780 798 2.762745 GACATGTGTTTGTCCGGTAGT 58.237 47.619 1.15 0.00 40.11 2.73
791 809 1.301401 CCACGGTCGGACATGTGTT 60.301 57.895 22.80 0.00 0.00 3.32
900 929 2.406452 CTTGGCTCGCCGCTTGTTTT 62.406 55.000 3.14 0.00 39.42 2.43
909 938 3.130160 CTGCTTCCTTGGCTCGCC 61.130 66.667 0.00 0.00 0.00 5.54
919 948 1.652167 GCTGTGCTTAGGCTGCTTCC 61.652 60.000 0.00 0.00 39.59 3.46
1055 1116 0.390472 GAGAGGCGAACAGTGGGAAG 60.390 60.000 0.00 0.00 0.00 3.46
1118 1179 4.856607 CGGTCGGCGAGAGGAAGC 62.857 72.222 11.20 0.00 0.00 3.86
1166 1231 2.029844 AAGCAAGCGCGGAGAAGAC 61.030 57.895 8.83 0.00 45.49 3.01
1169 1234 3.726517 GCAAGCAAGCGCGGAGAA 61.727 61.111 8.83 0.00 45.49 2.87
1346 1423 9.747293 GCCGATCCTATAACCTAATAAAGATAC 57.253 37.037 0.00 0.00 0.00 2.24
1350 1427 7.612677 ACTGCCGATCCTATAACCTAATAAAG 58.387 38.462 0.00 0.00 0.00 1.85
1363 1440 2.131709 CCCCGAACTGCCGATCCTA 61.132 63.158 0.00 0.00 0.00 2.94
1375 1452 2.259266 AAGCGTTTAAAGACCCCGAA 57.741 45.000 0.00 0.00 0.00 4.30
1376 1453 2.145536 GAAAGCGTTTAAAGACCCCGA 58.854 47.619 0.00 0.00 0.00 5.14
1393 1566 0.533308 CGAGTCCACGGTTTGGGAAA 60.533 55.000 0.00 0.00 46.92 3.13
1411 1584 3.125316 GGCTACAAAGTCCAAATCTCACG 59.875 47.826 0.00 0.00 0.00 4.35
1485 1662 7.415206 GGGTAAGCAACATAAATAACTGTCCAG 60.415 40.741 0.00 0.00 0.00 3.86
1502 1679 1.202830 ACCATGAACGTGGGTAAGCAA 60.203 47.619 16.05 0.00 43.77 3.91
1503 1680 0.398696 ACCATGAACGTGGGTAAGCA 59.601 50.000 16.05 0.00 43.77 3.91
1521 1716 2.736670 AGGGCTTGGTTATGGATCAC 57.263 50.000 0.00 0.00 0.00 3.06
1559 1754 5.674525 TCAACTACTAGAATTCCAGGCATG 58.325 41.667 5.86 0.00 0.00 4.06
1686 1890 5.577554 TGAACGTGTCGCTTGCTATATTAAA 59.422 36.000 0.00 0.00 0.00 1.52
1696 1900 1.125021 CTAGCTTGAACGTGTCGCTTG 59.875 52.381 0.00 2.79 32.49 4.01
1743 1947 2.198827 TGACCATACCAGCCAAACAG 57.801 50.000 0.00 0.00 0.00 3.16
1756 1960 0.323360 CATCCCCGTTGGTTGACCAT 60.323 55.000 3.28 0.00 46.97 3.55
1778 1982 9.243637 CGTTTCAAAATTTCAATCCTCTTTACA 57.756 29.630 0.00 0.00 0.00 2.41
1785 1989 5.355596 TGCACGTTTCAAAATTTCAATCCT 58.644 33.333 0.00 0.00 0.00 3.24
1798 2002 8.194769 TGTTCTATTCTAGATATGCACGTTTCA 58.805 33.333 0.00 0.00 34.22 2.69
1799 2003 8.575565 TGTTCTATTCTAGATATGCACGTTTC 57.424 34.615 0.00 0.00 34.22 2.78
1803 2007 8.352752 TGTTTGTTCTATTCTAGATATGCACG 57.647 34.615 0.00 0.00 34.22 5.34
1837 2041 5.693555 TCATAAGCATTTATGTCGAGAGCAG 59.306 40.000 5.81 0.00 44.23 4.24
1860 2064 4.022503 GCATCAGCAGGAATTAAGGGATTC 60.023 45.833 0.00 0.00 41.58 2.52
1874 2078 3.497297 TTTGCATAACAGCATCAGCAG 57.503 42.857 0.00 0.00 45.19 4.24
1887 2091 4.216042 CCGTCATGATGGCTTATTTGCATA 59.784 41.667 20.90 0.00 34.04 3.14
1901 2105 2.864097 GCGCTCACTTATCCGTCATGAT 60.864 50.000 0.00 0.00 0.00 2.45
1909 2113 5.547181 AAAAACTAAGCGCTCACTTATCC 57.453 39.130 12.06 0.00 31.90 2.59
2081 2285 3.278987 ACCCATCCGGTACCCAATATA 57.721 47.619 6.25 0.00 45.97 0.86
2082 2286 2.127651 ACCCATCCGGTACCCAATAT 57.872 50.000 6.25 0.00 45.97 1.28
2094 2298 0.455815 GCACGGAAAATGACCCATCC 59.544 55.000 0.00 0.00 0.00 3.51
2095 2299 1.173043 TGCACGGAAAATGACCCATC 58.827 50.000 0.00 0.00 0.00 3.51
2189 2394 4.256920 ACCTATTTTGACTGCAGTAGCTG 58.743 43.478 21.73 6.51 44.36 4.24
2214 2419 2.556286 GCCCCTTGCTTGTGTCTAC 58.444 57.895 0.00 0.00 36.87 2.59
2273 2478 1.741706 TCGTTCAGACTAACCGCTAGG 59.258 52.381 0.00 0.00 45.13 3.02
2275 2480 2.479049 GCATCGTTCAGACTAACCGCTA 60.479 50.000 0.00 0.00 0.00 4.26
2384 2589 9.941325 AGCATGATTTTGGAATTTGTTAATACA 57.059 25.926 0.00 0.00 0.00 2.29
2477 2682 5.068987 AGTTTCTGAGCTGCCACAATAAAAA 59.931 36.000 0.00 0.00 0.00 1.94
2680 2885 9.642327 CTTGATTAGATTGATACATCTCCTCTG 57.358 37.037 0.00 0.00 0.00 3.35
2735 2943 2.041819 CTCCCGGCTCCCTAAGGT 60.042 66.667 0.00 0.00 0.00 3.50
2936 3144 1.897398 GCGTGGGTGTTGATGACGAC 61.897 60.000 0.00 0.00 31.71 4.34
2957 3165 2.124570 GTGATGATGGGCAGCGGT 60.125 61.111 0.00 0.00 35.09 5.68
3183 3391 4.746309 TGGGACAGCCATGGCAGC 62.746 66.667 37.18 24.33 44.88 5.25
3236 3444 4.832608 GGTGCCCCGCCTAGAACG 62.833 72.222 0.00 0.00 0.00 3.95
3237 3445 4.484872 GGGTGCCCCGCCTAGAAC 62.485 72.222 0.00 0.00 32.13 3.01
3288 3496 3.834799 GCTGGTACCGAGGACCCG 61.835 72.222 7.57 0.00 35.99 5.28
3289 3497 3.834799 CGCTGGTACCGAGGACCC 61.835 72.222 7.57 0.00 35.99 4.46
3290 3498 3.834799 CCGCTGGTACCGAGGACC 61.835 72.222 17.28 0.00 37.49 4.46
3291 3499 4.509737 GCCGCTGGTACCGAGGAC 62.510 72.222 23.37 14.06 0.00 3.85
3294 3502 3.825833 GATCGCCGCTGGTACCGAG 62.826 68.421 7.57 7.18 32.86 4.63
3295 3503 3.896133 GATCGCCGCTGGTACCGA 61.896 66.667 7.57 0.00 0.00 4.69
3296 3504 4.201679 TGATCGCCGCTGGTACCG 62.202 66.667 7.57 3.32 0.00 4.02
3297 3505 2.585247 GTGATCGCCGCTGGTACC 60.585 66.667 4.43 4.43 0.00 3.34
3298 3506 2.585247 GGTGATCGCCGCTGGTAC 60.585 66.667 10.09 0.00 0.00 3.34
3299 3507 4.201679 CGGTGATCGCCGCTGGTA 62.202 66.667 32.67 0.00 45.47 3.25
3308 3516 4.626081 GATGGGCCCCGGTGATCG 62.626 72.222 22.27 0.00 38.88 3.69
3309 3517 4.271016 GGATGGGCCCCGGTGATC 62.271 72.222 22.27 15.14 0.00 2.92
3316 3524 4.851179 GAACGACGGATGGGCCCC 62.851 72.222 22.27 3.89 0.00 5.80
3317 3525 4.851179 GGAACGACGGATGGGCCC 62.851 72.222 17.59 17.59 0.00 5.80
3318 3526 4.090588 TGGAACGACGGATGGGCC 62.091 66.667 0.00 0.00 0.00 5.80
3319 3527 2.511600 CTGGAACGACGGATGGGC 60.512 66.667 0.00 0.00 0.00 5.36
3320 3528 2.511600 GCTGGAACGACGGATGGG 60.512 66.667 0.00 0.00 0.00 4.00
3321 3529 2.511600 GGCTGGAACGACGGATGG 60.512 66.667 0.00 0.00 0.00 3.51
3322 3530 2.885644 CGGCTGGAACGACGGATG 60.886 66.667 0.00 0.00 30.53 3.51
3323 3531 4.814294 GCGGCTGGAACGACGGAT 62.814 66.667 0.00 0.00 34.32 4.18
4195 6851 0.837272 GGTAGGATGCCAGCCAAGTA 59.163 55.000 0.01 0.00 42.29 2.24
4595 7251 2.925706 TGGCCAGGGTAGCGACAA 60.926 61.111 0.00 0.00 0.00 3.18
4596 7252 3.390521 CTGGCCAGGGTAGCGACA 61.391 66.667 26.14 0.00 0.00 4.35
4716 9169 3.731766 AAGCACAACCCTTGGCGGT 62.732 57.895 0.00 0.00 37.93 5.68
5077 9531 9.642327 CTTGATTAGATTGATACATCTCCTCTG 57.358 37.037 0.00 0.00 0.00 3.35
5276 9730 2.445274 GCTAGGGCCCTACCGGAA 60.445 66.667 28.66 8.68 40.62 4.30
5305 9759 2.100989 AGACGGAGGGAGTATGTGAAC 58.899 52.381 0.00 0.00 0.00 3.18
5405 9859 8.599624 AACTTCATCCATAGACAAATCCAATT 57.400 30.769 0.00 0.00 0.00 2.32
5476 9930 4.150980 CGTGCGTTTCTAGGTGACAATTTA 59.849 41.667 0.00 0.00 0.00 1.40
5519 9973 5.844516 CCCTTCATAAATAGTACTCCCTCCA 59.155 44.000 0.00 0.00 0.00 3.86
5544 9998 1.198408 CGACGACTAGTTGCCACACTA 59.802 52.381 10.23 0.00 0.00 2.74
5576 10048 4.980805 GACCTGCCCGTTGCGACA 62.981 66.667 4.64 0.00 45.60 4.35
6274 10960 4.638865 GTCAACAAGTTGTTCTGGGTTAGT 59.361 41.667 18.34 0.00 38.77 2.24
6278 10964 3.279434 GAGTCAACAAGTTGTTCTGGGT 58.721 45.455 18.34 2.18 38.77 4.51
6287 10973 4.142469 CCAAGGTTTTCGAGTCAACAAGTT 60.142 41.667 6.56 0.00 0.00 2.66
6291 10977 2.680841 CACCAAGGTTTTCGAGTCAACA 59.319 45.455 6.56 0.00 0.00 3.33
6367 11053 3.067684 ACCCATAAGACCTTGAAACCG 57.932 47.619 0.00 0.00 0.00 4.44
6390 11076 5.331069 ACAAGTTGAGGTAGCCTAGAGTTA 58.669 41.667 10.54 0.00 31.76 2.24
6405 11091 3.699038 CCTTTCAGTCCCAAACAAGTTGA 59.301 43.478 10.54 0.00 39.87 3.18
6432 11118 1.092921 TGCCTCCACACGACAACAAC 61.093 55.000 0.00 0.00 0.00 3.32
6440 11126 0.668706 CTCTGAACTGCCTCCACACG 60.669 60.000 0.00 0.00 0.00 4.49
6578 11469 6.223120 GTGATTGGCAAAACAAACCTAAGAT 58.777 36.000 3.01 0.00 33.48 2.40
6581 11472 4.162320 TGGTGATTGGCAAAACAAACCTAA 59.838 37.500 3.01 0.00 34.07 2.69
6590 11481 3.853355 AAATGGTGGTGATTGGCAAAA 57.147 38.095 3.01 0.00 0.00 2.44
6607 11498 5.625150 AGGAGACTACTTGCTCACAAAAAT 58.375 37.500 0.00 0.00 40.61 1.82
6619 11510 4.577988 TGTGCTCTAGAGGAGACTACTT 57.422 45.455 21.23 0.00 44.45 2.24
6640 11531 6.885918 TGAGGAACAATTCACATGATACACAT 59.114 34.615 0.00 0.00 40.17 3.21
6700 11591 1.909781 CCATGCCAAGCAAGGGTGT 60.910 57.895 2.94 0.00 42.78 4.16
6729 11620 2.279741 GCTTCAACATCGCTATGTCCA 58.720 47.619 4.09 0.00 45.79 4.02
6852 11743 6.557291 TTGCCAGAATAAAAGCAATTTTGG 57.443 33.333 0.00 2.00 40.13 3.28
6916 11808 5.123344 AGTGGTGCATAGAAAACGAATAACC 59.877 40.000 0.00 0.00 0.00 2.85
6978 11870 1.196808 CACCGAGATTCAACCAAACCG 59.803 52.381 0.00 0.00 0.00 4.44
7051 11943 1.960417 TTCCGCACAACATGACTTGA 58.040 45.000 0.00 0.00 0.00 3.02
7067 11959 3.118775 GGGGGTCAAAGCATGTTATTTCC 60.119 47.826 0.00 0.00 0.00 3.13
7068 11960 3.769300 AGGGGGTCAAAGCATGTTATTTC 59.231 43.478 0.00 0.00 0.00 2.17
7167 12062 3.997021 GCCATAATTGTCCTGTATCCTCG 59.003 47.826 0.00 0.00 0.00 4.63
7299 12194 2.859165 AAGGAGAGTGAAAATCGGCA 57.141 45.000 0.00 0.00 35.11 5.69
7575 12470 8.816894 TCACTATGTCCTCCTTAATATTGATCC 58.183 37.037 0.00 0.00 0.00 3.36
7578 12473 9.213777 ACTTCACTATGTCCTCCTTAATATTGA 57.786 33.333 0.00 0.00 0.00 2.57
7701 12596 1.522668 TCAAGAGGCACCACATTTCG 58.477 50.000 0.00 0.00 0.00 3.46
7760 12655 1.166531 ACCTCTCAACAAACTGGCGC 61.167 55.000 0.00 0.00 0.00 6.53
7934 12829 2.284263 TCACTAACTCAGCTGCATCG 57.716 50.000 9.47 0.00 0.00 3.84
8035 12930 1.816074 GCTTGAATTCACGGTGGGTA 58.184 50.000 7.89 0.00 0.00 3.69
8040 12935 3.374058 CCTTTATCGCTTGAATTCACGGT 59.626 43.478 7.89 8.53 0.00 4.83
8045 12940 4.636206 ACCTGTCCTTTATCGCTTGAATTC 59.364 41.667 0.00 0.00 0.00 2.17
8126 13021 2.878526 GCGGTGTTTCCTCCCAAGTAAT 60.879 50.000 0.00 0.00 0.00 1.89
8304 13199 5.772169 TCATCTCGATATCAATGGTCTCTGT 59.228 40.000 3.12 0.00 0.00 3.41
8366 13261 7.148523 CCGAACTCAATACCTACTTGTTTAACC 60.149 40.741 0.00 0.00 0.00 2.85
8376 13271 4.142004 ACATCACCCGAACTCAATACCTAC 60.142 45.833 0.00 0.00 0.00 3.18
8508 13412 5.106791 GCTGAATACATCTGATCATTTCCGG 60.107 44.000 0.00 0.00 0.00 5.14
8561 13470 5.712152 ATCTTTCCATGAAACTGTGAACC 57.288 39.130 0.00 0.00 0.00 3.62
8562 13471 7.970614 GGATAATCTTTCCATGAAACTGTGAAC 59.029 37.037 0.00 0.00 33.21 3.18
8597 13506 4.278678 GCTGTGTGCACCAATATCTAAC 57.721 45.455 15.69 2.61 42.31 2.34
8635 13544 0.038166 AGGAAAGAATGCCGCCTTCA 59.962 50.000 10.53 0.00 0.00 3.02
8688 13597 2.032924 GGTTTCAATACATACAGCCGCC 59.967 50.000 0.00 0.00 0.00 6.13
8903 13812 9.667107 CTGGGTAGATACAAGTATTTTTCTTGA 57.333 33.333 11.72 0.00 43.17 3.02
8908 13817 6.970191 AGCCTGGGTAGATACAAGTATTTTT 58.030 36.000 0.00 0.00 0.00 1.94
8964 13873 6.949352 ACTAACATATTCAGATGGCAAAGG 57.051 37.500 0.00 0.00 0.00 3.11
8969 13878 5.756195 TGCAACTAACATATTCAGATGGC 57.244 39.130 0.00 0.00 0.00 4.40
8990 13899 1.072965 AGACTCCCACCTTTCTGCTTG 59.927 52.381 0.00 0.00 0.00 4.01
9001 13910 5.347907 CGTACAACAAATCTTAGACTCCCAC 59.652 44.000 0.00 0.00 0.00 4.61
9031 13940 1.134788 GGTTCATCCACTCCCTACGTG 60.135 57.143 0.00 0.00 35.97 4.49
9125 14035 0.676466 TAACCCTTGATGGCACGCTG 60.676 55.000 0.00 0.00 0.00 5.18
9137 14047 6.717997 ACAGAATTTACCAAACGATAACCCTT 59.282 34.615 0.00 0.00 0.00 3.95
9143 14053 9.615295 GCTTTTTACAGAATTTACCAAACGATA 57.385 29.630 0.00 0.00 0.00 2.92
9146 14056 6.144886 GGGCTTTTTACAGAATTTACCAAACG 59.855 38.462 0.00 0.00 0.00 3.60
9147 14057 6.144886 CGGGCTTTTTACAGAATTTACCAAAC 59.855 38.462 0.00 0.00 0.00 2.93
9148 14058 6.183360 ACGGGCTTTTTACAGAATTTACCAAA 60.183 34.615 0.00 0.00 0.00 3.28
9149 14059 5.302313 ACGGGCTTTTTACAGAATTTACCAA 59.698 36.000 0.00 0.00 0.00 3.67
9150 14060 4.828387 ACGGGCTTTTTACAGAATTTACCA 59.172 37.500 0.00 0.00 0.00 3.25
9151 14061 5.158494 CACGGGCTTTTTACAGAATTTACC 58.842 41.667 0.00 0.00 0.00 2.85
9152 14062 5.627780 CACACGGGCTTTTTACAGAATTTAC 59.372 40.000 0.00 0.00 0.00 2.01
9153 14063 5.299782 ACACACGGGCTTTTTACAGAATTTA 59.700 36.000 0.00 0.00 0.00 1.40
9154 14064 4.098807 ACACACGGGCTTTTTACAGAATTT 59.901 37.500 0.00 0.00 0.00 1.82
9155 14065 3.634910 ACACACGGGCTTTTTACAGAATT 59.365 39.130 0.00 0.00 0.00 2.17
9156 14066 3.004315 CACACACGGGCTTTTTACAGAAT 59.996 43.478 0.00 0.00 0.00 2.40
9157 14067 2.356382 CACACACGGGCTTTTTACAGAA 59.644 45.455 0.00 0.00 0.00 3.02
9158 14068 1.944024 CACACACGGGCTTTTTACAGA 59.056 47.619 0.00 0.00 0.00 3.41
9159 14069 1.673920 ACACACACGGGCTTTTTACAG 59.326 47.619 0.00 0.00 0.00 2.74
9160 14070 1.402259 CACACACACGGGCTTTTTACA 59.598 47.619 0.00 0.00 0.00 2.41
9161 14071 1.268845 CCACACACACGGGCTTTTTAC 60.269 52.381 0.00 0.00 0.00 2.01
9162 14072 1.025812 CCACACACACGGGCTTTTTA 58.974 50.000 0.00 0.00 0.00 1.52
9163 14073 0.968393 ACCACACACACGGGCTTTTT 60.968 50.000 0.00 0.00 0.00 1.94
9164 14074 0.107116 TACCACACACACGGGCTTTT 60.107 50.000 0.00 0.00 0.00 2.27
9165 14075 0.109723 ATACCACACACACGGGCTTT 59.890 50.000 0.00 0.00 0.00 3.51
9166 14076 0.109723 AATACCACACACACGGGCTT 59.890 50.000 0.00 0.00 0.00 4.35
9167 14077 0.978151 TAATACCACACACACGGGCT 59.022 50.000 0.00 0.00 0.00 5.19
9168 14078 2.032680 ATAATACCACACACACGGGC 57.967 50.000 0.00 0.00 0.00 6.13
9169 14079 2.680841 CCAATAATACCACACACACGGG 59.319 50.000 0.00 0.00 0.00 5.28
9170 14080 3.126171 CACCAATAATACCACACACACGG 59.874 47.826 0.00 0.00 0.00 4.94
9171 14081 3.997681 TCACCAATAATACCACACACACG 59.002 43.478 0.00 0.00 0.00 4.49
9172 14082 5.615984 CGTTCACCAATAATACCACACACAC 60.616 44.000 0.00 0.00 0.00 3.82
9173 14083 4.452795 CGTTCACCAATAATACCACACACA 59.547 41.667 0.00 0.00 0.00 3.72
9174 14084 4.691685 TCGTTCACCAATAATACCACACAC 59.308 41.667 0.00 0.00 0.00 3.82
9175 14085 4.895961 TCGTTCACCAATAATACCACACA 58.104 39.130 0.00 0.00 0.00 3.72
9176 14086 4.201783 GCTCGTTCACCAATAATACCACAC 60.202 45.833 0.00 0.00 0.00 3.82
9177 14087 3.936453 GCTCGTTCACCAATAATACCACA 59.064 43.478 0.00 0.00 0.00 4.17
9178 14088 4.034048 CAGCTCGTTCACCAATAATACCAC 59.966 45.833 0.00 0.00 0.00 4.16
9179 14089 4.188462 CAGCTCGTTCACCAATAATACCA 58.812 43.478 0.00 0.00 0.00 3.25
9180 14090 4.034048 CACAGCTCGTTCACCAATAATACC 59.966 45.833 0.00 0.00 0.00 2.73
9181 14091 4.034048 CCACAGCTCGTTCACCAATAATAC 59.966 45.833 0.00 0.00 0.00 1.89
9182 14092 4.081365 TCCACAGCTCGTTCACCAATAATA 60.081 41.667 0.00 0.00 0.00 0.98
9183 14093 3.009723 CCACAGCTCGTTCACCAATAAT 58.990 45.455 0.00 0.00 0.00 1.28
9184 14094 2.037902 TCCACAGCTCGTTCACCAATAA 59.962 45.455 0.00 0.00 0.00 1.40
9185 14095 1.621317 TCCACAGCTCGTTCACCAATA 59.379 47.619 0.00 0.00 0.00 1.90
9186 14096 0.396435 TCCACAGCTCGTTCACCAAT 59.604 50.000 0.00 0.00 0.00 3.16
9187 14097 0.396435 ATCCACAGCTCGTTCACCAA 59.604 50.000 0.00 0.00 0.00 3.67
9188 14098 0.320683 CATCCACAGCTCGTTCACCA 60.321 55.000 0.00 0.00 0.00 4.17
9189 14099 1.639298 GCATCCACAGCTCGTTCACC 61.639 60.000 0.00 0.00 0.00 4.02
9190 14100 1.790387 GCATCCACAGCTCGTTCAC 59.210 57.895 0.00 0.00 0.00 3.18
9191 14101 1.737735 CGCATCCACAGCTCGTTCA 60.738 57.895 0.00 0.00 0.00 3.18
9192 14102 2.456119 CCGCATCCACAGCTCGTTC 61.456 63.158 0.00 0.00 0.00 3.95
9193 14103 2.434884 CCGCATCCACAGCTCGTT 60.435 61.111 0.00 0.00 0.00 3.85
9224 14134 5.476945 GGAAAAACTCAATCCTAAGCCTCAA 59.523 40.000 0.00 0.00 0.00 3.02
9230 14140 5.243730 TGGCAAGGAAAAACTCAATCCTAAG 59.756 40.000 0.00 0.00 42.72 2.18
9337 14252 2.359981 ACTATACGCTCAGGCAGGTA 57.640 50.000 0.00 0.00 38.60 3.08
9348 14263 0.458889 TGTCCGTGGCAACTATACGC 60.459 55.000 0.00 0.00 36.56 4.42
9364 14279 4.642429 ACCACCTTCACAACTAAGATGTC 58.358 43.478 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.