Multiple sequence alignment - TraesCS5D01G198900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G198900 chr5D 100.000 5752 0 0 1 5752 301985626 301991377 0.000000e+00 10623.0
1 TraesCS5D01G198900 chr5D 80.531 226 42 2 475 699 487944590 487944814 7.660000e-39 172.0
2 TraesCS5D01G198900 chr5D 78.112 233 47 3 484 716 263143477 263143249 1.670000e-30 145.0
3 TraesCS5D01G198900 chr5D 91.765 85 4 3 4421 4503 546838935 546839018 1.310000e-21 115.0
4 TraesCS5D01G198900 chr5B 96.120 3608 94 25 760 4350 344934884 344938462 0.000000e+00 5845.0
5 TraesCS5D01G198900 chr5B 93.717 748 24 8 4493 5233 344938500 344939231 0.000000e+00 1099.0
6 TraesCS5D01G198900 chr5B 92.511 227 16 1 512 738 344897060 344897285 2.000000e-84 324.0
7 TraesCS5D01G198900 chr5B 96.774 124 3 1 5261 5384 344940303 344940425 7.550000e-49 206.0
8 TraesCS5D01G198900 chr5A 94.861 3483 114 20 883 4350 395873201 395869769 0.000000e+00 5380.0
9 TraesCS5D01G198900 chr5A 95.286 700 18 4 4493 5185 395869731 395869040 0.000000e+00 1096.0
10 TraesCS5D01G198900 chr5A 87.474 974 63 26 1 924 395874163 395873199 0.000000e+00 1068.0
11 TraesCS5D01G198900 chr5A 86.449 428 38 10 5261 5674 395867950 395867529 8.790000e-123 451.0
12 TraesCS5D01G198900 chr5A 92.593 54 2 2 4372 4424 395869780 395869728 6.180000e-10 76.8
13 TraesCS5D01G198900 chr5A 97.143 35 1 0 5199 5233 395869059 395869025 6.220000e-05 60.2
14 TraesCS5D01G198900 chr3B 82.609 230 31 6 478 701 556288469 556288695 1.640000e-45 195.0
15 TraesCS5D01G198900 chr3B 89.011 91 4 1 4421 4505 825250108 825250018 2.190000e-19 108.0
16 TraesCS5D01G198900 chr4B 79.752 242 46 3 478 718 87400706 87400945 7.660000e-39 172.0
17 TraesCS5D01G198900 chr4B 88.333 60 7 0 5606 5665 64608054 64607995 7.990000e-09 73.1
18 TraesCS5D01G198900 chr1D 81.159 207 36 3 495 700 89134913 89134709 4.610000e-36 163.0
19 TraesCS5D01G198900 chr1D 94.737 76 2 2 4421 4496 379502428 379502355 3.640000e-22 117.0
20 TraesCS5D01G198900 chr6B 81.347 193 31 5 524 716 37936569 37936382 9.980000e-33 152.0
21 TraesCS5D01G198900 chr6B 91.209 91 5 3 4418 4507 538303733 538303821 2.820000e-23 121.0
22 TraesCS5D01G198900 chr2A 78.855 227 41 6 474 699 163922006 163921786 4.640000e-31 147.0
23 TraesCS5D01G198900 chr7B 95.062 81 1 2 4421 4498 261986899 261986819 2.180000e-24 124.0
24 TraesCS5D01G198900 chr2D 92.405 79 3 1 4421 4499 441760373 441760448 6.090000e-20 110.0
25 TraesCS5D01G198900 chr7A 91.250 80 5 1 4420 4497 32013213 32013134 2.190000e-19 108.0
26 TraesCS5D01G198900 chr4D 90.244 82 7 1 4414 4494 43548864 43548945 7.880000e-19 106.0
27 TraesCS5D01G198900 chr1B 87.912 91 7 3 4420 4507 4304687 4304776 2.840000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G198900 chr5D 301985626 301991377 5751 False 10623.000000 10623 100.000 1 5752 1 chr5D.!!$F1 5751
1 TraesCS5D01G198900 chr5B 344934884 344940425 5541 False 2383.333333 5845 95.537 760 5384 3 chr5B.!!$F2 4624
2 TraesCS5D01G198900 chr5A 395867529 395874163 6634 True 1355.333333 5380 92.301 1 5674 6 chr5A.!!$R1 5673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 919 0.037232 AGGTTAGAGTGCAGAACCGC 60.037 55.000 11.91 0.0 46.03 5.68 F
951 1061 0.976641 AGTGGCCACAGATCGAGAAA 59.023 50.000 36.39 0.0 0.00 2.52 F
1177 1287 1.745890 CCAGGTGAACCAGTCGACA 59.254 57.895 19.50 0.0 38.89 4.35 F
2568 2689 1.881973 CCAGTGTAAATGTGCTGCTGT 59.118 47.619 0.00 0.0 0.00 4.40 F
4434 4581 0.106116 AGACATACTCCCTCCGTCCC 60.106 60.000 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 1819 2.487805 GGCATCAACATCATCCTGGCTA 60.488 50.000 0.0 0.0 0.00 3.93 R
2156 2277 3.489229 GGCACACTTCTGTTTTCTGGTTC 60.489 47.826 0.0 0.0 0.00 3.62 R
2997 3118 3.423539 TCAGTAAGGCTGTGAGCAAAT 57.576 42.857 0.0 0.0 44.75 2.32 R
4478 4625 1.435563 TGAAGTACTCCCTCCTTCCCA 59.564 52.381 0.0 0.0 34.95 4.37 R
5483 6747 0.105709 CCCTGGTCACCCCAAACTTT 60.106 55.000 0.0 0.0 44.65 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 89 0.967380 GCACCTTAGCCATGGCAGTT 60.967 55.000 37.18 20.37 44.88 3.16
133 148 1.348036 CCCAACTTCTTCCTTCCGACT 59.652 52.381 0.00 0.00 0.00 4.18
138 153 5.298347 CAACTTCTTCCTTCCGACTACTTT 58.702 41.667 0.00 0.00 0.00 2.66
152 167 4.436317 CGACTACTTTCTCTTCACCTCTCG 60.436 50.000 0.00 0.00 0.00 4.04
163 178 0.319040 CACCTCTCGTGTGGTCACTG 60.319 60.000 8.19 0.00 41.89 3.66
167 182 1.270826 CTCTCGTGTGGTCACTGTCAT 59.729 52.381 2.66 0.00 41.89 3.06
177 192 2.039084 GGTCACTGTCATCTTCAAGGGT 59.961 50.000 0.00 0.00 0.00 4.34
186 201 5.119694 GTCATCTTCAAGGGTGTTAGATCC 58.880 45.833 0.00 0.00 30.18 3.36
194 209 2.838202 AGGGTGTTAGATCCGTCATTGT 59.162 45.455 0.00 0.00 0.00 2.71
206 221 2.609459 CCGTCATTGTCTATCCAAGTGC 59.391 50.000 0.00 0.00 0.00 4.40
212 227 1.901833 TGTCTATCCAAGTGCTGCTGA 59.098 47.619 0.00 0.00 0.00 4.26
216 231 0.399454 ATCCAAGTGCTGCTGACAGT 59.601 50.000 3.99 0.00 46.30 3.55
226 241 2.141517 CTGCTGACAGTGAGGAAGTTG 58.858 52.381 3.99 0.00 39.22 3.16
232 247 2.485814 GACAGTGAGGAAGTTGGCAATC 59.514 50.000 1.92 0.00 0.00 2.67
233 248 2.158623 ACAGTGAGGAAGTTGGCAATCA 60.159 45.455 1.92 0.00 0.00 2.57
237 252 3.256631 GTGAGGAAGTTGGCAATCACATT 59.743 43.478 20.37 5.48 37.56 2.71
242 257 4.219288 GGAAGTTGGCAATCACATTCTCTT 59.781 41.667 1.92 0.00 0.00 2.85
263 278 1.338020 CAAAAGCTTTCTTGCCTCCGT 59.662 47.619 13.10 0.00 31.78 4.69
268 283 1.719600 CTTTCTTGCCTCCGTGAGAG 58.280 55.000 2.84 0.00 42.83 3.20
272 287 1.603236 CTTGCCTCCGTGAGAGAGCT 61.603 60.000 0.00 0.00 46.50 4.09
282 297 1.877443 GTGAGAGAGCTCCGGATCTAC 59.123 57.143 8.02 5.88 38.42 2.59
283 298 1.771854 TGAGAGAGCTCCGGATCTACT 59.228 52.381 8.02 10.66 38.42 2.57
284 299 2.224426 TGAGAGAGCTCCGGATCTACTC 60.224 54.545 23.48 23.48 38.42 2.59
285 300 1.073284 AGAGAGCTCCGGATCTACTCC 59.927 57.143 21.15 13.25 38.42 3.85
321 336 3.259374 ACAATCTTGGCTTCTTCTCTCGA 59.741 43.478 0.00 0.00 0.00 4.04
325 340 0.969149 TGGCTTCTTCTCTCGAGCAA 59.031 50.000 7.81 1.85 36.87 3.91
326 341 1.552337 TGGCTTCTTCTCTCGAGCAAT 59.448 47.619 7.81 0.00 36.87 3.56
327 342 1.932511 GGCTTCTTCTCTCGAGCAATG 59.067 52.381 7.81 0.67 36.87 2.82
329 344 2.676463 GCTTCTTCTCTCGAGCAATGGT 60.676 50.000 7.81 0.00 35.29 3.55
330 345 2.662006 TCTTCTCTCGAGCAATGGTG 57.338 50.000 7.81 0.00 0.00 4.17
331 346 1.895798 TCTTCTCTCGAGCAATGGTGT 59.104 47.619 7.81 0.00 0.00 4.16
334 361 1.203287 TCTCTCGAGCAATGGTGTGAG 59.797 52.381 7.81 0.00 0.00 3.51
365 392 4.158384 CGAGTTACCATTGATTTGTGTGC 58.842 43.478 0.00 0.00 0.00 4.57
371 398 2.924926 CCATTGATTTGTGTGCCGATTG 59.075 45.455 0.00 0.00 0.00 2.67
373 400 2.987413 TGATTTGTGTGCCGATTGTC 57.013 45.000 0.00 0.00 0.00 3.18
386 413 4.218200 TGCCGATTGTCATGTTCATTTCTT 59.782 37.500 0.00 0.00 0.00 2.52
419 446 7.684428 GCCTTGTTGTCTCTAAAAAGTGGATTT 60.684 37.037 0.00 0.00 0.00 2.17
472 508 7.832769 TCTGTTAATTTATTAGGCAACCAACC 58.167 34.615 0.00 0.00 37.17 3.77
493 529 3.382546 CCTAATTACTTTCTCCGTCCGGA 59.617 47.826 0.00 0.00 42.90 5.14
506 542 1.745827 CGTCCGGATTTATTGGCACCT 60.746 52.381 7.81 0.00 0.00 4.00
507 543 2.375146 GTCCGGATTTATTGGCACCTT 58.625 47.619 7.81 0.00 0.00 3.50
526 562 7.862873 GGCACCTTTCATATTTTGTATCTAAGC 59.137 37.037 0.00 0.00 0.00 3.09
533 569 8.365399 TCATATTTTGTATCTAAGCTTGACCG 57.635 34.615 9.86 0.00 0.00 4.79
541 577 6.978659 TGTATCTAAGCTTGACCGTAGATTTG 59.021 38.462 9.86 0.00 37.57 2.32
585 621 9.190858 TGTATCTCACAAAAATTGTATTGTTGC 57.809 29.630 2.92 0.00 43.23 4.17
681 717 8.477419 TCTAAGGTCAAAGTTTGATCCAAAAT 57.523 30.769 22.47 13.74 41.78 1.82
687 723 9.586435 GGTCAAAGTTTGATCCAAAATAATAGG 57.414 33.333 20.72 0.00 42.47 2.57
689 725 8.257306 TCAAAGTTTGATCCAAAATAATAGGGC 58.743 33.333 14.35 0.00 35.03 5.19
757 794 5.640158 TTCTAAAAGAGACACCCAAAGGA 57.360 39.130 0.00 0.00 32.86 3.36
758 795 4.969484 TCTAAAAGAGACACCCAAAGGAC 58.031 43.478 0.00 0.00 36.73 3.85
843 881 9.086336 GTGAATTTTCAGAAGTCAAATCACAAA 57.914 29.630 8.49 0.00 37.98 2.83
853 891 5.513233 AGTCAAATCACAAATGGAGCCTAT 58.487 37.500 0.00 0.00 0.00 2.57
854 892 5.359009 AGTCAAATCACAAATGGAGCCTATG 59.641 40.000 0.00 0.00 0.00 2.23
855 893 4.098349 TCAAATCACAAATGGAGCCTATGC 59.902 41.667 0.00 0.00 37.95 3.14
865 903 3.813724 GCCTATGCTGGGCCAGGT 61.814 66.667 33.43 3.79 43.49 4.00
866 904 3.010144 CCTATGCTGGGCCAGGTT 58.990 61.111 33.43 9.96 31.21 3.50
867 905 1.994885 GCCTATGCTGGGCCAGGTTA 61.995 60.000 33.43 9.53 43.49 2.85
868 906 0.109342 CCTATGCTGGGCCAGGTTAG 59.891 60.000 33.43 17.41 31.21 2.34
869 907 1.131638 CTATGCTGGGCCAGGTTAGA 58.868 55.000 33.43 6.20 31.21 2.10
870 908 1.071385 CTATGCTGGGCCAGGTTAGAG 59.929 57.143 33.43 9.07 31.21 2.43
871 909 0.916358 ATGCTGGGCCAGGTTAGAGT 60.916 55.000 33.43 0.00 31.21 3.24
874 912 1.841302 CTGGGCCAGGTTAGAGTGCA 61.841 60.000 26.34 0.00 0.00 4.57
876 914 1.553690 GGGCCAGGTTAGAGTGCAGA 61.554 60.000 4.39 0.00 0.00 4.26
878 916 1.443802 GCCAGGTTAGAGTGCAGAAC 58.556 55.000 0.00 0.00 0.00 3.01
881 919 0.037232 AGGTTAGAGTGCAGAACCGC 60.037 55.000 11.91 0.00 46.03 5.68
951 1061 0.976641 AGTGGCCACAGATCGAGAAA 59.023 50.000 36.39 0.00 0.00 2.52
960 1070 4.099266 CCACAGATCGAGAAATCTCTTCCT 59.901 45.833 8.67 0.47 40.75 3.36
1108 1218 3.303928 CGGTATCCTCCGCTCCCC 61.304 72.222 0.00 0.00 43.96 4.81
1177 1287 1.745890 CCAGGTGAACCAGTCGACA 59.254 57.895 19.50 0.00 38.89 4.35
1521 1631 4.319177 AGAGTCCTGTTCATTTGCTACAC 58.681 43.478 0.00 0.00 0.00 2.90
1553 1669 6.032094 GCTGATAAACCATTTCATGTGACAG 58.968 40.000 0.00 0.00 0.00 3.51
1598 1714 8.781196 ACAATGAGCATATGAGATCATTTGTAC 58.219 33.333 20.07 8.81 39.68 2.90
1603 1719 5.049474 GCATATGAGATCATTTGTACGGCAA 60.049 40.000 6.97 0.00 37.53 4.52
1608 1724 4.513442 AGATCATTTGTACGGCAAGCTTA 58.487 39.130 0.00 0.00 38.47 3.09
1628 1744 9.669887 AAGCTTATTTTAATTGCCATTGATTGA 57.330 25.926 0.00 0.00 0.00 2.57
1658 1774 6.400568 CCTTCTGTTTGTAGGTTTATCGGTA 58.599 40.000 0.00 0.00 0.00 4.02
1670 1786 5.186409 AGGTTTATCGGTAGCTTACTTGTCA 59.814 40.000 0.00 0.00 0.00 3.58
1703 1819 2.332258 TAGGAGGGCCTGGCTGCTAT 62.332 60.000 12.95 5.12 46.45 2.97
2117 2238 7.601130 TGTAAACGTTAGCATACACTGAGATTT 59.399 33.333 0.00 0.00 0.00 2.17
2143 2264 6.266131 TGATACCATCCTAGCTTTTCCAAT 57.734 37.500 0.00 0.00 0.00 3.16
2144 2265 6.672593 TGATACCATCCTAGCTTTTCCAATT 58.327 36.000 0.00 0.00 0.00 2.32
2355 2476 9.563748 AAGCAGGTATACTTACACTTAACAAAA 57.436 29.630 2.25 0.00 0.00 2.44
2413 2534 4.080919 TCTGTTATGCCACTACATTCTGCT 60.081 41.667 0.00 0.00 0.00 4.24
2515 2636 3.664107 TCTCGTGCTGCTGTTAATTTCT 58.336 40.909 0.00 0.00 0.00 2.52
2568 2689 1.881973 CCAGTGTAAATGTGCTGCTGT 59.118 47.619 0.00 0.00 0.00 4.40
2569 2690 2.351060 CCAGTGTAAATGTGCTGCTGTG 60.351 50.000 0.00 0.00 0.00 3.66
2997 3118 2.614969 AGGGGCCCTGAATGCAGA 60.615 61.111 28.21 0.00 45.17 4.26
3071 3192 3.008485 AGGTGAGAGGAGTTGTCCAAATC 59.992 47.826 0.00 0.00 46.80 2.17
3072 3193 3.008485 GGTGAGAGGAGTTGTCCAAATCT 59.992 47.826 7.33 0.00 46.80 2.40
3073 3194 4.249661 GTGAGAGGAGTTGTCCAAATCTC 58.750 47.826 7.33 1.57 46.80 2.75
3074 3195 4.020662 GTGAGAGGAGTTGTCCAAATCTCT 60.021 45.833 7.33 7.86 46.80 3.10
3075 3196 4.221703 TGAGAGGAGTTGTCCAAATCTCTC 59.778 45.833 18.88 18.88 46.80 3.20
3076 3197 4.424842 AGAGGAGTTGTCCAAATCTCTCT 58.575 43.478 15.99 15.99 46.80 3.10
3077 3198 4.466015 AGAGGAGTTGTCCAAATCTCTCTC 59.534 45.833 15.99 10.86 46.80 3.20
3078 3199 4.424842 AGGAGTTGTCCAAATCTCTCTCT 58.575 43.478 7.33 0.00 46.80 3.10
3079 3200 4.466015 AGGAGTTGTCCAAATCTCTCTCTC 59.534 45.833 7.33 0.00 46.80 3.20
3080 3201 4.466015 GGAGTTGTCCAAATCTCTCTCTCT 59.534 45.833 7.33 0.00 43.31 3.10
3081 3202 5.394115 GGAGTTGTCCAAATCTCTCTCTCTC 60.394 48.000 7.33 0.00 43.31 3.20
3082 3203 5.332743 AGTTGTCCAAATCTCTCTCTCTCT 58.667 41.667 0.00 0.00 0.00 3.10
3083 3204 5.418840 AGTTGTCCAAATCTCTCTCTCTCTC 59.581 44.000 0.00 0.00 0.00 3.20
3084 3205 5.191727 TGTCCAAATCTCTCTCTCTCTCT 57.808 43.478 0.00 0.00 0.00 3.10
3085 3206 5.192927 TGTCCAAATCTCTCTCTCTCTCTC 58.807 45.833 0.00 0.00 0.00 3.20
3086 3207 5.044919 TGTCCAAATCTCTCTCTCTCTCTCT 60.045 44.000 0.00 0.00 0.00 3.10
3127 3268 7.785033 TCTCTCATGCATTCAGTAATCAGTTA 58.215 34.615 0.00 0.00 0.00 2.24
3184 3325 1.609840 GACGACGTGTTGAGAGCAGC 61.610 60.000 4.58 0.00 0.00 5.25
3256 3397 4.519730 AGTATCGGAGATGGTTACTACTGC 59.480 45.833 0.00 0.00 45.12 4.40
3286 3427 1.683441 GGGACCACTTGTTCCGGAT 59.317 57.895 4.15 0.00 31.15 4.18
3304 3445 4.280929 CCGGATCATGTTCTAGTGATACCA 59.719 45.833 0.00 0.00 35.33 3.25
3382 3523 5.545723 CAGGAGATATAAGGATTCACTGGGT 59.454 44.000 0.00 0.00 0.00 4.51
3412 3553 2.147150 GAGAAACGAGGAAAAGCAGCT 58.853 47.619 0.00 0.00 0.00 4.24
3574 3715 1.883275 CCGTACCATTGTCAAAGGCAA 59.117 47.619 6.75 0.00 0.00 4.52
3653 3794 0.463654 GTGAATCCAGGTGCGCCATA 60.464 55.000 20.59 3.09 37.19 2.74
3654 3795 0.473755 TGAATCCAGGTGCGCCATAT 59.526 50.000 20.59 5.62 37.19 1.78
3656 3797 2.105649 TGAATCCAGGTGCGCCATATTA 59.894 45.455 20.59 0.00 37.19 0.98
3658 3799 2.183478 TCCAGGTGCGCCATATTATG 57.817 50.000 20.59 6.53 37.19 1.90
3659 3800 1.419762 TCCAGGTGCGCCATATTATGT 59.580 47.619 20.59 0.00 37.19 2.29
3660 3801 2.635427 TCCAGGTGCGCCATATTATGTA 59.365 45.455 20.59 0.00 37.19 2.29
3661 3802 3.071747 TCCAGGTGCGCCATATTATGTAA 59.928 43.478 20.59 0.00 37.19 2.41
3665 3807 5.858049 CAGGTGCGCCATATTATGTAATTTG 59.142 40.000 20.59 0.00 37.19 2.32
3667 3809 6.040391 AGGTGCGCCATATTATGTAATTTGTT 59.960 34.615 20.59 0.00 37.19 2.83
3698 3840 7.121315 GCCTGACTTAATGTAAAGGAAAGACAT 59.879 37.037 0.00 0.00 35.63 3.06
3728 3870 3.118884 AGCACATTCTTTCAATCCATGCC 60.119 43.478 0.00 0.00 0.00 4.40
4008 4151 6.795144 AATGGATTGCAAATCATTGTCCTA 57.205 33.333 21.86 8.07 38.85 2.94
4019 4162 7.431249 CAAATCATTGTCCTATGCAAATAGCT 58.569 34.615 0.00 0.00 45.94 3.32
4233 4380 4.261801 GCTTGTTTTATGTAGAGCTCCCA 58.738 43.478 10.93 8.21 0.00 4.37
4357 4504 7.044798 AGTTTCAGATGATAACCTACTCAAGC 58.955 38.462 0.00 0.00 0.00 4.01
4358 4505 6.544928 TTCAGATGATAACCTACTCAAGCA 57.455 37.500 0.00 0.00 0.00 3.91
4359 4506 6.154203 TCAGATGATAACCTACTCAAGCAG 57.846 41.667 0.00 0.00 0.00 4.24
4360 4507 5.069648 TCAGATGATAACCTACTCAAGCAGG 59.930 44.000 0.00 0.00 37.97 4.85
4361 4508 3.543680 TGATAACCTACTCAAGCAGGC 57.456 47.619 0.00 0.00 35.14 4.85
4362 4509 2.837591 TGATAACCTACTCAAGCAGGCA 59.162 45.455 0.00 0.00 35.14 4.75
4363 4510 3.263170 TGATAACCTACTCAAGCAGGCAA 59.737 43.478 0.00 0.00 35.14 4.52
4364 4511 2.191128 AACCTACTCAAGCAGGCAAG 57.809 50.000 0.00 0.00 35.14 4.01
4365 4512 1.352083 ACCTACTCAAGCAGGCAAGA 58.648 50.000 0.00 0.00 35.14 3.02
4366 4513 1.699634 ACCTACTCAAGCAGGCAAGAA 59.300 47.619 0.00 0.00 35.14 2.52
4367 4514 2.106511 ACCTACTCAAGCAGGCAAGAAA 59.893 45.455 0.00 0.00 35.14 2.52
4368 4515 3.245052 ACCTACTCAAGCAGGCAAGAAAT 60.245 43.478 0.00 0.00 35.14 2.17
4369 4516 3.760684 CCTACTCAAGCAGGCAAGAAATT 59.239 43.478 0.00 0.00 0.00 1.82
4370 4517 4.943705 CCTACTCAAGCAGGCAAGAAATTA 59.056 41.667 0.00 0.00 0.00 1.40
4371 4518 5.415701 CCTACTCAAGCAGGCAAGAAATTAA 59.584 40.000 0.00 0.00 0.00 1.40
4372 4519 5.382618 ACTCAAGCAGGCAAGAAATTAAG 57.617 39.130 0.00 0.00 0.00 1.85
4373 4520 5.072741 ACTCAAGCAGGCAAGAAATTAAGA 58.927 37.500 0.00 0.00 0.00 2.10
4374 4521 5.182760 ACTCAAGCAGGCAAGAAATTAAGAG 59.817 40.000 0.00 0.00 0.00 2.85
4375 4522 5.072741 TCAAGCAGGCAAGAAATTAAGAGT 58.927 37.500 0.00 0.00 0.00 3.24
4376 4523 5.048504 TCAAGCAGGCAAGAAATTAAGAGTG 60.049 40.000 0.00 0.00 0.00 3.51
4377 4524 4.655963 AGCAGGCAAGAAATTAAGAGTGA 58.344 39.130 0.00 0.00 0.00 3.41
4378 4525 5.259632 AGCAGGCAAGAAATTAAGAGTGAT 58.740 37.500 0.00 0.00 0.00 3.06
4379 4526 6.418101 AGCAGGCAAGAAATTAAGAGTGATA 58.582 36.000 0.00 0.00 0.00 2.15
4380 4527 6.317391 AGCAGGCAAGAAATTAAGAGTGATAC 59.683 38.462 0.00 0.00 0.00 2.24
4381 4528 6.458888 GCAGGCAAGAAATTAAGAGTGATACC 60.459 42.308 0.00 0.00 0.00 2.73
4382 4529 6.825721 CAGGCAAGAAATTAAGAGTGATACCT 59.174 38.462 0.00 0.00 0.00 3.08
4425 4572 8.779354 ACTTTGTCAATCTTAAGACATACTCC 57.221 34.615 7.48 0.00 43.57 3.85
4426 4573 7.824779 ACTTTGTCAATCTTAAGACATACTCCC 59.175 37.037 7.48 0.00 43.57 4.30
4427 4574 7.496346 TTGTCAATCTTAAGACATACTCCCT 57.504 36.000 7.48 0.00 43.57 4.20
4428 4575 7.113658 TGTCAATCTTAAGACATACTCCCTC 57.886 40.000 7.48 0.00 39.65 4.30
4429 4576 6.098409 TGTCAATCTTAAGACATACTCCCTCC 59.902 42.308 7.48 0.00 39.65 4.30
4430 4577 5.302059 TCAATCTTAAGACATACTCCCTCCG 59.698 44.000 7.48 0.00 0.00 4.63
4431 4578 4.246712 TCTTAAGACATACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
4432 4579 4.205587 TCTTAAGACATACTCCCTCCGTC 58.794 47.826 0.00 0.00 0.00 4.79
4433 4580 1.777941 AAGACATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
4434 4581 0.106116 AGACATACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
4435 4582 0.396695 GACATACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
4436 4583 0.264955 ACATACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
4437 4584 1.502039 ACATACTCCCTCCGTCCCATA 59.498 52.381 0.00 0.00 0.00 2.74
4438 4585 2.090943 ACATACTCCCTCCGTCCCATAA 60.091 50.000 0.00 0.00 0.00 1.90
4439 4586 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
4440 4587 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4441 4588 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4442 4589 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4443 4590 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
4444 4591 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
4445 4592 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4446 4593 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
4448 4595 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4449 4596 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4450 4597 3.800506 CCGTCCCATAATGTAAGACGTTC 59.199 47.826 9.63 0.00 46.62 3.95
4451 4598 4.426416 CGTCCCATAATGTAAGACGTTCA 58.574 43.478 2.88 0.00 43.89 3.18
4452 4599 4.266976 CGTCCCATAATGTAAGACGTTCAC 59.733 45.833 2.88 0.00 43.89 3.18
4453 4600 5.416947 GTCCCATAATGTAAGACGTTCACT 58.583 41.667 0.00 0.00 0.00 3.41
4454 4601 6.567050 GTCCCATAATGTAAGACGTTCACTA 58.433 40.000 0.00 0.00 0.00 2.74
4455 4602 6.696148 GTCCCATAATGTAAGACGTTCACTAG 59.304 42.308 0.00 0.00 0.00 2.57
4456 4603 6.379133 TCCCATAATGTAAGACGTTCACTAGT 59.621 38.462 0.00 0.00 0.00 2.57
4457 4604 6.475727 CCCATAATGTAAGACGTTCACTAGTG 59.524 42.308 17.17 17.17 0.00 2.74
4458 4605 7.033791 CCATAATGTAAGACGTTCACTAGTGT 58.966 38.462 21.99 2.89 0.00 3.55
4459 4606 7.220300 CCATAATGTAAGACGTTCACTAGTGTC 59.780 40.741 21.99 12.33 0.00 3.67
4460 4607 5.700722 ATGTAAGACGTTCACTAGTGTCA 57.299 39.130 21.99 8.00 33.83 3.58
4461 4608 5.503662 TGTAAGACGTTCACTAGTGTCAA 57.496 39.130 21.99 7.80 33.83 3.18
4462 4609 5.893687 TGTAAGACGTTCACTAGTGTCAAA 58.106 37.500 21.99 7.06 33.83 2.69
4463 4610 6.331845 TGTAAGACGTTCACTAGTGTCAAAA 58.668 36.000 21.99 6.70 33.83 2.44
4464 4611 6.812656 TGTAAGACGTTCACTAGTGTCAAAAA 59.187 34.615 21.99 6.32 33.83 1.94
4485 4632 6.753107 AAAACGTCTTACATTATGGGAAGG 57.247 37.500 8.56 0.00 0.00 3.46
4486 4633 5.687166 AACGTCTTACATTATGGGAAGGA 57.313 39.130 8.56 0.00 0.00 3.36
4487 4634 5.277857 ACGTCTTACATTATGGGAAGGAG 57.722 43.478 8.56 6.37 0.00 3.69
4488 4635 4.101119 ACGTCTTACATTATGGGAAGGAGG 59.899 45.833 8.56 3.36 0.00 4.30
4489 4636 4.503296 CGTCTTACATTATGGGAAGGAGGG 60.503 50.000 8.56 0.00 0.00 4.30
4490 4637 4.658901 GTCTTACATTATGGGAAGGAGGGA 59.341 45.833 8.56 0.00 0.00 4.20
4491 4638 4.907875 TCTTACATTATGGGAAGGAGGGAG 59.092 45.833 8.56 0.00 0.00 4.30
4492 4639 3.151542 ACATTATGGGAAGGAGGGAGT 57.848 47.619 0.00 0.00 0.00 3.85
4493 4640 4.295905 ACATTATGGGAAGGAGGGAGTA 57.704 45.455 0.00 0.00 0.00 2.59
4494 4641 3.974642 ACATTATGGGAAGGAGGGAGTAC 59.025 47.826 0.00 0.00 0.00 2.73
4542 4689 0.602905 GCACAACTCGCCTACAAGGT 60.603 55.000 0.00 0.00 37.80 3.50
4780 4927 1.839994 TCAAGCCACCTATCTCTTGGG 59.160 52.381 0.00 0.00 37.21 4.12
4781 4928 0.548510 AAGCCACCTATCTCTTGGGC 59.451 55.000 0.00 0.00 41.65 5.36
4868 5020 4.424711 GGTGAGCCGGGCCATGAA 62.425 66.667 17.02 0.00 0.00 2.57
5084 5238 8.458843 CCTTCTTTGTTTGAACTCTAGAACAAA 58.541 33.333 14.38 14.38 44.81 2.83
5154 5308 0.395686 CGCACCCTCCATCATGATCT 59.604 55.000 4.86 0.00 0.00 2.75
5165 5319 3.697542 CCATCATGATCTGGCTTTTGTCA 59.302 43.478 4.86 0.00 0.00 3.58
5166 5320 4.341235 CCATCATGATCTGGCTTTTGTCAT 59.659 41.667 4.86 0.00 31.46 3.06
5167 5321 5.533528 CCATCATGATCTGGCTTTTGTCATA 59.466 40.000 4.86 0.00 31.46 2.15
5168 5322 6.040054 CCATCATGATCTGGCTTTTGTCATAA 59.960 38.462 4.86 0.00 31.46 1.90
5169 5323 7.417003 CCATCATGATCTGGCTTTTGTCATAAA 60.417 37.037 4.86 0.00 31.46 1.40
5170 5324 7.649533 TCATGATCTGGCTTTTGTCATAAAT 57.350 32.000 0.00 0.00 31.46 1.40
5171 5325 8.070034 TCATGATCTGGCTTTTGTCATAAATT 57.930 30.769 0.00 0.00 31.46 1.82
5172 5326 8.533657 TCATGATCTGGCTTTTGTCATAAATTT 58.466 29.630 0.00 0.00 31.46 1.82
5173 5327 8.600625 CATGATCTGGCTTTTGTCATAAATTTG 58.399 33.333 0.00 0.00 31.46 2.32
5174 5328 7.669427 TGATCTGGCTTTTGTCATAAATTTGT 58.331 30.769 0.00 0.00 31.46 2.83
5175 5329 8.801299 TGATCTGGCTTTTGTCATAAATTTGTA 58.199 29.630 0.00 0.00 31.46 2.41
5176 5330 9.638239 GATCTGGCTTTTGTCATAAATTTGTAA 57.362 29.630 0.00 0.00 31.46 2.41
5178 5332 9.995003 TCTGGCTTTTGTCATAAATTTGTAATT 57.005 25.926 0.00 0.00 31.46 1.40
5180 5334 9.770097 TGGCTTTTGTCATAAATTTGTAATTGA 57.230 25.926 0.00 0.00 0.00 2.57
5233 5419 3.131933 AGATGTTCATCTGGGACGAGAAG 59.868 47.826 13.57 0.00 0.00 2.85
5234 5420 2.248248 TGTTCATCTGGGACGAGAAGT 58.752 47.619 0.00 0.00 0.00 3.01
5237 5423 2.248248 TCATCTGGGACGAGAAGTTGT 58.752 47.619 0.00 0.00 0.00 3.32
5238 5424 3.427573 TCATCTGGGACGAGAAGTTGTA 58.572 45.455 0.00 0.00 0.00 2.41
5240 5426 4.098044 TCATCTGGGACGAGAAGTTGTATC 59.902 45.833 0.00 0.00 0.00 2.24
5241 5427 2.758979 TCTGGGACGAGAAGTTGTATCC 59.241 50.000 0.00 0.00 0.00 2.59
5242 5428 1.829222 TGGGACGAGAAGTTGTATCCC 59.171 52.381 12.77 12.77 45.24 3.85
5243 5429 1.202382 GGGACGAGAAGTTGTATCCCG 60.202 57.143 6.17 0.00 36.68 5.14
5246 5432 3.550436 GGACGAGAAGTTGTATCCCGATC 60.550 52.174 0.00 0.00 0.00 3.69
5247 5433 3.021695 ACGAGAAGTTGTATCCCGATCA 58.978 45.455 0.00 0.00 0.00 2.92
5248 5434 3.446161 ACGAGAAGTTGTATCCCGATCAA 59.554 43.478 0.00 0.00 0.00 2.57
5249 5435 4.081862 ACGAGAAGTTGTATCCCGATCAAA 60.082 41.667 0.00 0.00 0.00 2.69
5251 5437 5.523916 CGAGAAGTTGTATCCCGATCAAAAT 59.476 40.000 0.00 0.00 0.00 1.82
5252 5438 6.700081 CGAGAAGTTGTATCCCGATCAAAATA 59.300 38.462 0.00 0.00 0.00 1.40
5253 5439 7.223971 CGAGAAGTTGTATCCCGATCAAAATAA 59.776 37.037 0.00 0.00 0.00 1.40
5255 5441 6.937436 AGTTGTATCCCGATCAAAATAACC 57.063 37.500 0.00 0.00 0.00 2.85
5257 5443 7.116736 AGTTGTATCCCGATCAAAATAACCTT 58.883 34.615 0.00 0.00 0.00 3.50
5258 5444 6.935741 TGTATCCCGATCAAAATAACCTTG 57.064 37.500 0.00 0.00 0.00 3.61
5259 5445 6.419791 TGTATCCCGATCAAAATAACCTTGT 58.580 36.000 0.00 0.00 0.00 3.16
5260 5446 5.835113 ATCCCGATCAAAATAACCTTGTG 57.165 39.130 0.00 0.00 0.00 3.33
5287 6545 1.202330 CCTGAAGAGAGTGCCATCCT 58.798 55.000 0.00 0.00 0.00 3.24
5293 6551 1.066573 AGAGAGTGCCATCCTTCAACG 60.067 52.381 0.00 0.00 0.00 4.10
5316 6574 1.106944 CCTTGTGGTGGCGGACTTTT 61.107 55.000 0.00 0.00 0.00 2.27
5408 6670 9.323985 CTTTCAAGGAGAGAGTTATTAAGGATG 57.676 37.037 0.00 0.00 0.00 3.51
5409 6671 7.366847 TCAAGGAGAGAGTTATTAAGGATGG 57.633 40.000 0.00 0.00 0.00 3.51
5462 6726 3.006859 TGTGGATGAAGATGACGACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
5476 6740 2.159627 CGACTTGTGTTCATAAGGTGGC 59.840 50.000 12.42 0.00 0.00 5.01
5481 6745 3.826524 TGTGTTCATAAGGTGGCTTCAA 58.173 40.909 0.00 0.00 0.00 2.69
5483 6747 4.646945 TGTGTTCATAAGGTGGCTTCAAAA 59.353 37.500 0.00 0.00 0.00 2.44
5509 6773 3.900888 GGTGACCAGGGGAAGTCA 58.099 61.111 0.00 0.00 40.61 3.41
5511 6775 0.036875 GGTGACCAGGGGAAGTCAAG 59.963 60.000 0.00 0.00 44.19 3.02
5513 6777 1.630878 GTGACCAGGGGAAGTCAAGAT 59.369 52.381 0.00 0.00 44.19 2.40
5522 6786 4.476479 AGGGGAAGTCAAGATGAAGCTAAT 59.524 41.667 0.00 0.00 0.00 1.73
5523 6787 5.044550 AGGGGAAGTCAAGATGAAGCTAATT 60.045 40.000 0.00 0.00 0.00 1.40
5524 6788 6.158695 AGGGGAAGTCAAGATGAAGCTAATTA 59.841 38.462 0.00 0.00 0.00 1.40
5525 6789 6.828785 GGGGAAGTCAAGATGAAGCTAATTAA 59.171 38.462 0.00 0.00 0.00 1.40
5539 6803 8.780249 TGAAGCTAATTAAAGACACTTGGTTAC 58.220 33.333 0.00 0.00 0.00 2.50
5544 6808 5.989551 TTAAAGACACTTGGTTACGGAAC 57.010 39.130 0.42 0.42 34.56 3.62
5598 6864 3.650139 AGATTTGTTAGCGCCTATACCG 58.350 45.455 2.29 0.00 0.00 4.02
5610 6882 2.028385 GCCTATACCGGGGTCAACATAG 60.028 54.545 6.32 0.00 0.00 2.23
5625 6897 6.316390 GGTCAACATAGAGAAATACAAGGTGG 59.684 42.308 0.00 0.00 0.00 4.61
5637 6909 1.064017 ACAAGGTGGCAAAGAAGACCA 60.064 47.619 0.00 0.00 0.00 4.02
5644 6916 2.159310 TGGCAAAGAAGACCACAAAACG 60.159 45.455 0.00 0.00 0.00 3.60
5646 6918 3.363178 GCAAAGAAGACCACAAAACGAG 58.637 45.455 0.00 0.00 0.00 4.18
5647 6919 3.181500 GCAAAGAAGACCACAAAACGAGT 60.181 43.478 0.00 0.00 0.00 4.18
5665 6937 2.618709 GAGTTGTGAGTGAAACAAGGGG 59.381 50.000 0.00 0.00 41.43 4.79
5668 6940 1.562008 TGTGAGTGAAACAAGGGGTCA 59.438 47.619 0.00 0.00 41.43 4.02
5670 6942 2.123589 TGAGTGAAACAAGGGGTCAGA 58.876 47.619 0.00 0.00 41.43 3.27
5674 6946 2.040939 TGAAACAAGGGGTCAGACGTA 58.959 47.619 0.00 0.00 0.00 3.57
5675 6947 2.635915 TGAAACAAGGGGTCAGACGTAT 59.364 45.455 0.00 0.00 0.00 3.06
5676 6948 2.762535 AACAAGGGGTCAGACGTATG 57.237 50.000 3.15 3.15 0.00 2.39
5677 6949 1.933021 ACAAGGGGTCAGACGTATGA 58.067 50.000 9.19 9.19 0.00 2.15
5678 6950 1.825474 ACAAGGGGTCAGACGTATGAG 59.175 52.381 14.18 3.13 0.00 2.90
5679 6951 1.137086 CAAGGGGTCAGACGTATGAGG 59.863 57.143 14.18 0.00 0.00 3.86
5680 6952 0.629596 AGGGGTCAGACGTATGAGGA 59.370 55.000 14.18 0.00 0.00 3.71
5681 6953 1.218196 AGGGGTCAGACGTATGAGGAT 59.782 52.381 14.18 0.00 0.00 3.24
5682 6954 1.614413 GGGGTCAGACGTATGAGGATC 59.386 57.143 14.18 1.25 0.00 3.36
5683 6955 2.588620 GGGTCAGACGTATGAGGATCT 58.411 52.381 14.18 0.00 34.92 2.75
5684 6956 2.554893 GGGTCAGACGTATGAGGATCTC 59.445 54.545 14.18 0.00 34.92 2.75
5685 6957 3.482436 GGTCAGACGTATGAGGATCTCT 58.518 50.000 14.18 0.00 34.92 3.10
5686 6958 4.505215 GGGTCAGACGTATGAGGATCTCTA 60.505 50.000 14.18 0.00 34.92 2.43
5687 6959 5.250200 GGTCAGACGTATGAGGATCTCTAT 58.750 45.833 14.18 0.00 34.92 1.98
5688 6960 5.353123 GGTCAGACGTATGAGGATCTCTATC 59.647 48.000 14.18 0.00 34.92 2.08
5689 6961 5.935206 GTCAGACGTATGAGGATCTCTATCA 59.065 44.000 14.18 0.00 34.92 2.15
5690 6962 6.092122 GTCAGACGTATGAGGATCTCTATCAG 59.908 46.154 14.18 0.00 34.92 2.90
5691 6963 4.941263 AGACGTATGAGGATCTCTATCAGC 59.059 45.833 0.00 0.00 34.92 4.26
5692 6964 4.657013 ACGTATGAGGATCTCTATCAGCA 58.343 43.478 0.00 0.00 34.92 4.41
5693 6965 5.260424 ACGTATGAGGATCTCTATCAGCAT 58.740 41.667 0.00 0.00 34.92 3.79
5694 6966 5.714333 ACGTATGAGGATCTCTATCAGCATT 59.286 40.000 0.00 0.00 34.92 3.56
5695 6967 6.210385 ACGTATGAGGATCTCTATCAGCATTT 59.790 38.462 0.00 0.00 34.92 2.32
5696 6968 7.394641 ACGTATGAGGATCTCTATCAGCATTTA 59.605 37.037 0.00 0.00 34.92 1.40
5697 6969 8.246871 CGTATGAGGATCTCTATCAGCATTTAA 58.753 37.037 0.00 0.00 34.92 1.52
5698 6970 9.935241 GTATGAGGATCTCTATCAGCATTTAAA 57.065 33.333 0.00 0.00 34.92 1.52
5701 6973 9.935241 TGAGGATCTCTATCAGCATTTAAATAC 57.065 33.333 0.00 0.00 34.92 1.89
5702 6974 8.994429 AGGATCTCTATCAGCATTTAAATACG 57.006 34.615 0.00 0.00 33.41 3.06
5703 6975 8.807118 AGGATCTCTATCAGCATTTAAATACGA 58.193 33.333 0.00 0.00 33.41 3.43
5704 6976 9.424319 GGATCTCTATCAGCATTTAAATACGAA 57.576 33.333 0.00 0.00 33.41 3.85
5706 6978 8.818141 TCTCTATCAGCATTTAAATACGAAGG 57.182 34.615 0.00 0.00 0.00 3.46
5707 6979 8.638873 TCTCTATCAGCATTTAAATACGAAGGA 58.361 33.333 0.00 0.00 0.00 3.36
5708 6980 9.261180 CTCTATCAGCATTTAAATACGAAGGAA 57.739 33.333 0.00 0.00 0.00 3.36
5709 6981 9.261180 TCTATCAGCATTTAAATACGAAGGAAG 57.739 33.333 0.00 0.00 0.00 3.46
5710 6982 9.261180 CTATCAGCATTTAAATACGAAGGAAGA 57.739 33.333 0.00 0.00 0.00 2.87
5711 6983 7.303634 TCAGCATTTAAATACGAAGGAAGAC 57.696 36.000 0.00 0.00 0.00 3.01
5712 6984 6.876789 TCAGCATTTAAATACGAAGGAAGACA 59.123 34.615 0.00 0.00 0.00 3.41
5713 6985 7.552687 TCAGCATTTAAATACGAAGGAAGACAT 59.447 33.333 0.00 0.00 0.00 3.06
5714 6986 8.826710 CAGCATTTAAATACGAAGGAAGACATA 58.173 33.333 0.00 0.00 0.00 2.29
5715 6987 9.391006 AGCATTTAAATACGAAGGAAGACATAA 57.609 29.630 0.00 0.00 0.00 1.90
5716 6988 9.651718 GCATTTAAATACGAAGGAAGACATAAG 57.348 33.333 0.00 0.00 0.00 1.73
5719 6991 9.932207 TTTAAATACGAAGGAAGACATAAGTGA 57.068 29.630 0.00 0.00 0.00 3.41
5720 6992 7.829378 AAATACGAAGGAAGACATAAGTGAC 57.171 36.000 0.00 0.00 0.00 3.67
5721 6993 4.866508 ACGAAGGAAGACATAAGTGACA 57.133 40.909 0.00 0.00 0.00 3.58
5722 6994 5.407407 ACGAAGGAAGACATAAGTGACAT 57.593 39.130 0.00 0.00 0.00 3.06
5723 6995 5.794894 ACGAAGGAAGACATAAGTGACATT 58.205 37.500 0.00 0.00 0.00 2.71
5724 6996 6.231211 ACGAAGGAAGACATAAGTGACATTT 58.769 36.000 0.00 0.00 0.00 2.32
5725 6997 7.383687 ACGAAGGAAGACATAAGTGACATTTA 58.616 34.615 0.00 0.00 0.00 1.40
5726 6998 8.041323 ACGAAGGAAGACATAAGTGACATTTAT 58.959 33.333 0.00 0.00 0.00 1.40
5727 6999 9.529325 CGAAGGAAGACATAAGTGACATTTATA 57.471 33.333 3.16 0.00 0.00 0.98
5743 7015 9.489084 TGACATTTATAAGATTACCAAGATCCG 57.511 33.333 0.00 0.00 0.00 4.18
5744 7016 9.706691 GACATTTATAAGATTACCAAGATCCGA 57.293 33.333 0.00 0.00 0.00 4.55
5745 7017 9.712305 ACATTTATAAGATTACCAAGATCCGAG 57.288 33.333 0.00 0.00 0.00 4.63
5746 7018 9.929180 CATTTATAAGATTACCAAGATCCGAGA 57.071 33.333 0.00 0.00 0.00 4.04
5748 7020 8.935614 TTATAAGATTACCAAGATCCGAGAGA 57.064 34.615 0.00 0.00 0.00 3.10
5749 7021 5.782893 AAGATTACCAAGATCCGAGAGAG 57.217 43.478 0.00 0.00 0.00 3.20
5750 7022 4.148838 AGATTACCAAGATCCGAGAGAGG 58.851 47.826 0.00 0.00 0.00 3.69
5751 7023 3.664551 TTACCAAGATCCGAGAGAGGA 57.335 47.619 0.00 0.00 45.54 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 109 1.000771 GGAAGAAGTTGGGAGGGGC 60.001 63.158 0.00 0.00 0.00 5.80
152 167 3.111853 TGAAGATGACAGTGACCACAC 57.888 47.619 0.00 0.00 46.24 3.82
163 178 5.119694 GGATCTAACACCCTTGAAGATGAC 58.880 45.833 0.00 0.00 32.56 3.06
167 182 3.170717 ACGGATCTAACACCCTTGAAGA 58.829 45.455 0.00 0.00 0.00 2.87
177 192 5.596772 TGGATAGACAATGACGGATCTAACA 59.403 40.000 0.00 0.00 0.00 2.41
186 201 3.308053 CAGCACTTGGATAGACAATGACG 59.692 47.826 0.00 0.00 0.00 4.35
194 209 1.901833 TGTCAGCAGCACTTGGATAGA 59.098 47.619 0.00 0.00 0.00 1.98
212 227 2.158623 TGATTGCCAACTTCCTCACTGT 60.159 45.455 0.00 0.00 0.00 3.55
216 231 2.655090 TGTGATTGCCAACTTCCTCA 57.345 45.000 0.00 0.00 0.00 3.86
226 241 4.624452 GCTTTTGAAGAGAATGTGATTGCC 59.376 41.667 0.00 0.00 0.00 4.52
232 247 6.074463 GCAAGAAAGCTTTTGAAGAGAATGTG 60.074 38.462 14.05 0.28 30.14 3.21
233 248 5.981915 GCAAGAAAGCTTTTGAAGAGAATGT 59.018 36.000 14.05 0.00 30.14 2.71
237 252 4.210331 AGGCAAGAAAGCTTTTGAAGAGA 58.790 39.130 14.05 0.00 30.14 3.10
242 257 1.608590 CGGAGGCAAGAAAGCTTTTGA 59.391 47.619 14.05 0.00 30.14 2.69
263 278 1.771854 AGTAGATCCGGAGCTCTCTCA 59.228 52.381 28.44 5.00 41.13 3.27
282 297 1.185618 TGTTGTGGGAGGAGACGGAG 61.186 60.000 0.00 0.00 0.00 4.63
283 298 0.761323 TTGTTGTGGGAGGAGACGGA 60.761 55.000 0.00 0.00 0.00 4.69
284 299 0.324943 ATTGTTGTGGGAGGAGACGG 59.675 55.000 0.00 0.00 0.00 4.79
285 300 1.276421 AGATTGTTGTGGGAGGAGACG 59.724 52.381 0.00 0.00 0.00 4.18
286 301 3.077359 CAAGATTGTTGTGGGAGGAGAC 58.923 50.000 0.00 0.00 0.00 3.36
287 302 2.040278 CCAAGATTGTTGTGGGAGGAGA 59.960 50.000 0.00 0.00 0.00 3.71
321 336 1.968017 CGCCACTCACACCATTGCT 60.968 57.895 0.00 0.00 0.00 3.91
325 340 2.665000 CTCCGCCACTCACACCAT 59.335 61.111 0.00 0.00 0.00 3.55
326 341 4.314440 GCTCCGCCACTCACACCA 62.314 66.667 0.00 0.00 0.00 4.17
329 344 4.056125 CTCGCTCCGCCACTCACA 62.056 66.667 0.00 0.00 0.00 3.58
330 345 2.209064 TAACTCGCTCCGCCACTCAC 62.209 60.000 0.00 0.00 0.00 3.51
331 346 1.974875 TAACTCGCTCCGCCACTCA 60.975 57.895 0.00 0.00 0.00 3.41
334 361 2.508663 GGTAACTCGCTCCGCCAC 60.509 66.667 0.00 0.00 0.00 5.01
348 375 2.784347 TCGGCACACAAATCAATGGTA 58.216 42.857 0.00 0.00 0.00 3.25
365 392 5.570206 CACAAGAAATGAACATGACAATCGG 59.430 40.000 0.00 4.17 0.00 4.18
371 398 5.050837 GGCAAACACAAGAAATGAACATGAC 60.051 40.000 0.00 0.00 0.00 3.06
373 400 5.051816 AGGCAAACACAAGAAATGAACATG 58.948 37.500 0.00 0.00 0.00 3.21
386 413 2.722094 AGAGACAACAAGGCAAACACA 58.278 42.857 0.00 0.00 0.00 3.72
419 446 3.658709 TCGATACAACATGTGCAAGTCA 58.341 40.909 0.00 0.00 0.00 3.41
472 508 4.644103 TCCGGACGGAGAAAGTAATTAG 57.356 45.455 9.76 0.00 39.76 1.73
507 543 8.826710 CGGTCAAGCTTAGATACAAAATATGAA 58.173 33.333 0.00 0.00 0.00 2.57
526 562 7.416154 TTTGTTAGTCAAATCTACGGTCAAG 57.584 36.000 0.00 0.00 40.56 3.02
667 703 7.357471 AGAGCCCTATTATTTTGGATCAAACT 58.643 34.615 0.00 0.00 35.77 2.66
681 717 6.500751 CCTCTGGGTTTATTAGAGCCCTATTA 59.499 42.308 0.00 0.00 41.59 0.98
684 720 4.078219 TCCTCTGGGTTTATTAGAGCCCTA 60.078 45.833 0.00 0.00 41.59 3.53
687 723 4.445019 CCTTCCTCTGGGTTTATTAGAGCC 60.445 50.000 0.00 0.00 37.27 4.70
689 725 4.969359 TCCCTTCCTCTGGGTTTATTAGAG 59.031 45.833 0.00 0.00 44.84 2.43
741 778 2.982488 AGATGTCCTTTGGGTGTCTCTT 59.018 45.455 0.00 0.00 0.00 2.85
757 794 5.806654 AGGCAAAACATTTACCAAGATGT 57.193 34.783 0.00 0.00 38.08 3.06
758 795 5.409214 CCAAGGCAAAACATTTACCAAGATG 59.591 40.000 0.00 0.00 0.00 2.90
853 891 1.538876 ACTCTAACCTGGCCCAGCA 60.539 57.895 4.81 0.00 0.00 4.41
854 892 1.078143 CACTCTAACCTGGCCCAGC 60.078 63.158 4.81 0.00 0.00 4.85
855 893 1.078143 GCACTCTAACCTGGCCCAG 60.078 63.158 2.91 2.91 0.00 4.45
856 894 1.841302 CTGCACTCTAACCTGGCCCA 61.841 60.000 0.00 0.00 0.00 5.36
857 895 1.078143 CTGCACTCTAACCTGGCCC 60.078 63.158 0.00 0.00 0.00 5.80
858 896 0.324943 TTCTGCACTCTAACCTGGCC 59.675 55.000 0.00 0.00 0.00 5.36
859 897 1.443802 GTTCTGCACTCTAACCTGGC 58.556 55.000 0.00 0.00 0.00 4.85
860 898 1.673033 CGGTTCTGCACTCTAACCTGG 60.673 57.143 11.60 0.00 40.44 4.45
861 899 1.714794 CGGTTCTGCACTCTAACCTG 58.285 55.000 11.60 4.55 40.44 4.00
862 900 0.037232 GCGGTTCTGCACTCTAACCT 60.037 55.000 11.60 0.00 40.44 3.50
863 901 1.352156 CGCGGTTCTGCACTCTAACC 61.352 60.000 0.00 5.74 39.44 2.85
864 902 1.956620 GCGCGGTTCTGCACTCTAAC 61.957 60.000 8.83 0.00 34.15 2.34
865 903 1.736645 GCGCGGTTCTGCACTCTAA 60.737 57.895 8.83 0.00 34.15 2.10
866 904 2.126071 GCGCGGTTCTGCACTCTA 60.126 61.111 8.83 0.00 34.15 2.43
892 930 0.247460 TTCAGCTCATCTCCCGTGTG 59.753 55.000 0.00 0.00 0.00 3.82
893 931 0.247736 GTTCAGCTCATCTCCCGTGT 59.752 55.000 0.00 0.00 0.00 4.49
894 932 0.460987 GGTTCAGCTCATCTCCCGTG 60.461 60.000 0.00 0.00 0.00 4.94
895 933 1.901085 GGTTCAGCTCATCTCCCGT 59.099 57.895 0.00 0.00 0.00 5.28
896 934 1.227089 CGGTTCAGCTCATCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
968 1078 1.527380 AGGTTTTTCCTTGCGGCGA 60.527 52.632 12.98 0.00 45.67 5.54
972 1082 0.667993 TGAGCAGGTTTTTCCTTGCG 59.332 50.000 0.00 0.00 45.67 4.85
1108 1218 1.293924 CCAGCTAGAATGCGAGGTTG 58.706 55.000 0.00 0.00 38.13 3.77
1521 1631 9.079833 CATGAAATGGTTTATCAGCTACAAAAG 57.920 33.333 0.00 0.00 41.79 2.27
1553 1669 3.664107 TGTCAGGTAAATCAGCTCACAC 58.336 45.455 0.00 0.00 30.06 3.82
1603 1719 9.841295 ATCAATCAATGGCAATTAAAATAAGCT 57.159 25.926 0.00 0.00 0.00 3.74
1608 1724 8.905850 GGGAAATCAATCAATGGCAATTAAAAT 58.094 29.630 0.00 0.00 0.00 1.82
1628 1744 4.741928 ACCTACAAACAGAAGGGGAAAT 57.258 40.909 0.00 0.00 34.52 2.17
1658 1774 4.505742 CCTTTCCTTCCTGACAAGTAAGCT 60.506 45.833 0.00 0.00 0.00 3.74
1670 1786 2.563406 CCTCCTAACCCTTTCCTTCCT 58.437 52.381 0.00 0.00 0.00 3.36
1703 1819 2.487805 GGCATCAACATCATCCTGGCTA 60.488 50.000 0.00 0.00 0.00 3.93
2101 2218 8.432013 TGGTATCATAAAATCTCAGTGTATGCT 58.568 33.333 0.00 0.00 0.00 3.79
2102 2219 8.607441 TGGTATCATAAAATCTCAGTGTATGC 57.393 34.615 0.00 0.00 0.00 3.14
2117 2238 7.387265 TGGAAAAGCTAGGATGGTATCATAA 57.613 36.000 0.00 0.00 32.98 1.90
2156 2277 3.489229 GGCACACTTCTGTTTTCTGGTTC 60.489 47.826 0.00 0.00 0.00 3.62
2413 2534 7.227910 AGTCTTAAACCGTGAAAGCAATAAAGA 59.772 33.333 0.00 0.00 0.00 2.52
2568 2689 9.890629 ACTTGATAGTTAAACAGATTATCAGCA 57.109 29.630 0.00 0.00 33.67 4.41
2997 3118 3.423539 TCAGTAAGGCTGTGAGCAAAT 57.576 42.857 0.00 0.00 44.75 2.32
3071 3192 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3072 3193 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3073 3194 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3074 3195 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3075 3196 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3076 3197 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3077 3198 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3078 3199 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3079 3200 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3080 3201 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3081 3202 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3082 3203 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3083 3204 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3084 3205 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3085 3206 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
3086 3207 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
3184 3325 2.684881 ACTTGACAAACAGAACCAGCAG 59.315 45.455 0.00 0.00 0.00 4.24
3286 3427 6.850752 TCAACTGGTATCACTAGAACATGA 57.149 37.500 0.00 0.00 30.59 3.07
3304 3445 5.881923 TTGTAGTAGGGAAGTGTTCAACT 57.118 39.130 0.00 0.00 42.60 3.16
3382 3523 8.287503 GCTTTTCCTCGTTTCTCAAAATACTTA 58.712 33.333 0.00 0.00 0.00 2.24
3412 3553 6.072175 GCTGTGAAACCCACTCAAAATATACA 60.072 38.462 0.00 0.00 45.86 2.29
3531 3672 4.550422 GGACAGCCTTCACAAAGAAATTC 58.450 43.478 0.00 0.00 35.40 2.17
3653 3794 9.200817 AGTCAGGCCATAAACAAATTACATAAT 57.799 29.630 5.01 0.00 0.00 1.28
3654 3795 8.588290 AGTCAGGCCATAAACAAATTACATAA 57.412 30.769 5.01 0.00 0.00 1.90
3656 3797 7.480760 AAGTCAGGCCATAAACAAATTACAT 57.519 32.000 5.01 0.00 0.00 2.29
3658 3799 9.301153 CATTAAGTCAGGCCATAAACAAATTAC 57.699 33.333 5.01 0.00 0.00 1.89
3659 3800 9.030452 ACATTAAGTCAGGCCATAAACAAATTA 57.970 29.630 5.01 0.00 0.00 1.40
3660 3801 7.906327 ACATTAAGTCAGGCCATAAACAAATT 58.094 30.769 5.01 0.00 0.00 1.82
3661 3802 7.480760 ACATTAAGTCAGGCCATAAACAAAT 57.519 32.000 5.01 0.00 0.00 2.32
3665 3807 7.338449 TCCTTTACATTAAGTCAGGCCATAAAC 59.662 37.037 5.01 0.00 32.92 2.01
3667 3809 6.964464 TCCTTTACATTAAGTCAGGCCATAA 58.036 36.000 5.01 0.00 32.92 1.90
3698 3840 8.801299 TGGATTGAAAGAATGTGCTTATGTTTA 58.199 29.630 0.00 0.00 0.00 2.01
3728 3870 2.615447 AGAACAATGCATGTATCCTGCG 59.385 45.455 0.00 0.00 42.99 5.18
4233 4380 1.625315 TGCAAGAGTAGTGTGCCATCT 59.375 47.619 0.00 0.00 37.48 2.90
4350 4497 5.072741 TCTTAATTTCTTGCCTGCTTGAGT 58.927 37.500 0.00 0.00 0.00 3.41
4351 4498 5.182760 ACTCTTAATTTCTTGCCTGCTTGAG 59.817 40.000 0.00 0.00 0.00 3.02
4352 4499 5.048504 CACTCTTAATTTCTTGCCTGCTTGA 60.049 40.000 0.00 0.00 0.00 3.02
4353 4500 5.048504 TCACTCTTAATTTCTTGCCTGCTTG 60.049 40.000 0.00 0.00 0.00 4.01
4354 4501 5.072741 TCACTCTTAATTTCTTGCCTGCTT 58.927 37.500 0.00 0.00 0.00 3.91
4355 4502 4.655963 TCACTCTTAATTTCTTGCCTGCT 58.344 39.130 0.00 0.00 0.00 4.24
4356 4503 5.573337 ATCACTCTTAATTTCTTGCCTGC 57.427 39.130 0.00 0.00 0.00 4.85
4357 4504 6.825721 AGGTATCACTCTTAATTTCTTGCCTG 59.174 38.462 0.00 0.00 0.00 4.85
4358 4505 6.825721 CAGGTATCACTCTTAATTTCTTGCCT 59.174 38.462 0.00 0.00 0.00 4.75
4359 4506 6.823689 TCAGGTATCACTCTTAATTTCTTGCC 59.176 38.462 0.00 0.00 0.00 4.52
4360 4507 7.849804 TCAGGTATCACTCTTAATTTCTTGC 57.150 36.000 0.00 0.00 0.00 4.01
4366 4513 8.744652 CCGAGATATCAGGTATCACTCTTAATT 58.255 37.037 5.32 0.00 41.43 1.40
4367 4514 7.147983 GCCGAGATATCAGGTATCACTCTTAAT 60.148 40.741 15.74 0.00 41.43 1.40
4368 4515 6.151312 GCCGAGATATCAGGTATCACTCTTAA 59.849 42.308 15.74 0.00 41.43 1.85
4369 4516 5.648526 GCCGAGATATCAGGTATCACTCTTA 59.351 44.000 15.74 0.00 41.43 2.10
4370 4517 4.461081 GCCGAGATATCAGGTATCACTCTT 59.539 45.833 15.74 0.00 41.43 2.85
4371 4518 4.013728 GCCGAGATATCAGGTATCACTCT 58.986 47.826 15.74 0.00 41.43 3.24
4372 4519 3.759086 TGCCGAGATATCAGGTATCACTC 59.241 47.826 15.74 0.00 41.43 3.51
4373 4520 3.767711 TGCCGAGATATCAGGTATCACT 58.232 45.455 15.74 0.00 41.43 3.41
4374 4521 4.238514 GTTGCCGAGATATCAGGTATCAC 58.761 47.826 15.74 6.72 41.43 3.06
4375 4522 3.258372 GGTTGCCGAGATATCAGGTATCA 59.742 47.826 15.74 5.82 41.43 2.15
4376 4523 3.511934 AGGTTGCCGAGATATCAGGTATC 59.488 47.826 15.74 11.36 39.64 2.24
4377 4524 3.511477 AGGTTGCCGAGATATCAGGTAT 58.489 45.455 15.74 0.00 0.00 2.73
4378 4525 2.958818 AGGTTGCCGAGATATCAGGTA 58.041 47.619 15.74 10.43 0.00 3.08
4379 4526 1.794714 AGGTTGCCGAGATATCAGGT 58.205 50.000 15.74 0.00 0.00 4.00
4380 4527 3.322254 AGTTAGGTTGCCGAGATATCAGG 59.678 47.826 5.32 9.04 0.00 3.86
4381 4528 4.592485 AGTTAGGTTGCCGAGATATCAG 57.408 45.455 5.32 0.00 0.00 2.90
4382 4529 5.116180 CAAAGTTAGGTTGCCGAGATATCA 58.884 41.667 5.32 0.00 0.00 2.15
4387 4534 2.103432 TGACAAAGTTAGGTTGCCGAGA 59.897 45.455 0.00 0.00 0.00 4.04
4391 4538 5.453567 AAGATTGACAAAGTTAGGTTGCC 57.546 39.130 0.00 0.00 0.00 4.52
4423 4570 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4424 4571 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4425 4572 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
4426 4573 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
4427 4574 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4430 4577 5.416947 AGTGAACGTCTTACATTATGGGAC 58.583 41.667 0.00 1.75 0.00 4.46
4431 4578 5.670792 AGTGAACGTCTTACATTATGGGA 57.329 39.130 0.00 0.00 0.00 4.37
4432 4579 6.475727 CACTAGTGAACGTCTTACATTATGGG 59.524 42.308 18.45 0.00 0.00 4.00
4433 4580 7.033791 ACACTAGTGAACGTCTTACATTATGG 58.966 38.462 29.30 0.00 0.00 2.74
4434 4581 7.753580 TGACACTAGTGAACGTCTTACATTATG 59.246 37.037 29.30 0.00 0.00 1.90
4435 4582 7.823665 TGACACTAGTGAACGTCTTACATTAT 58.176 34.615 29.30 0.24 0.00 1.28
4436 4583 7.205737 TGACACTAGTGAACGTCTTACATTA 57.794 36.000 29.30 0.00 0.00 1.90
4437 4584 6.080648 TGACACTAGTGAACGTCTTACATT 57.919 37.500 29.30 1.42 0.00 2.71
4438 4585 5.700722 TGACACTAGTGAACGTCTTACAT 57.299 39.130 29.30 1.64 0.00 2.29
4439 4586 5.503662 TTGACACTAGTGAACGTCTTACA 57.496 39.130 29.30 10.86 0.00 2.41
4440 4587 6.817270 TTTTGACACTAGTGAACGTCTTAC 57.183 37.500 29.30 8.74 0.00 2.34
4461 4608 6.943718 TCCTTCCCATAATGTAAGACGTTTTT 59.056 34.615 0.00 0.00 0.00 1.94
4462 4609 6.478129 TCCTTCCCATAATGTAAGACGTTTT 58.522 36.000 0.00 0.00 0.00 2.43
4463 4610 6.057321 TCCTTCCCATAATGTAAGACGTTT 57.943 37.500 0.00 0.00 0.00 3.60
4464 4611 5.396436 CCTCCTTCCCATAATGTAAGACGTT 60.396 44.000 0.00 0.00 0.00 3.99
4465 4612 4.101119 CCTCCTTCCCATAATGTAAGACGT 59.899 45.833 0.00 0.00 0.00 4.34
4466 4613 4.503296 CCCTCCTTCCCATAATGTAAGACG 60.503 50.000 0.00 0.00 0.00 4.18
4467 4614 4.658901 TCCCTCCTTCCCATAATGTAAGAC 59.341 45.833 0.00 0.00 0.00 3.01
4468 4615 4.903149 TCCCTCCTTCCCATAATGTAAGA 58.097 43.478 0.00 0.00 0.00 2.10
4469 4616 4.660771 ACTCCCTCCTTCCCATAATGTAAG 59.339 45.833 0.00 0.00 0.00 2.34
4470 4617 4.641868 ACTCCCTCCTTCCCATAATGTAA 58.358 43.478 0.00 0.00 0.00 2.41
4471 4618 4.295905 ACTCCCTCCTTCCCATAATGTA 57.704 45.455 0.00 0.00 0.00 2.29
4472 4619 3.151542 ACTCCCTCCTTCCCATAATGT 57.848 47.619 0.00 0.00 0.00 2.71
4473 4620 4.235372 AGTACTCCCTCCTTCCCATAATG 58.765 47.826 0.00 0.00 0.00 1.90
4474 4621 4.578149 AGTACTCCCTCCTTCCCATAAT 57.422 45.455 0.00 0.00 0.00 1.28
4475 4622 4.265124 TGAAGTACTCCCTCCTTCCCATAA 60.265 45.833 0.00 0.00 34.95 1.90
4476 4623 3.273886 TGAAGTACTCCCTCCTTCCCATA 59.726 47.826 0.00 0.00 34.95 2.74
4477 4624 2.045885 TGAAGTACTCCCTCCTTCCCAT 59.954 50.000 0.00 0.00 34.95 4.00
4478 4625 1.435563 TGAAGTACTCCCTCCTTCCCA 59.564 52.381 0.00 0.00 34.95 4.37
4479 4626 2.112190 CTGAAGTACTCCCTCCTTCCC 58.888 57.143 0.00 0.00 34.95 3.97
4480 4627 2.822697 ACTGAAGTACTCCCTCCTTCC 58.177 52.381 0.00 0.00 34.95 3.46
4481 4628 5.018149 AGTTACTGAAGTACTCCCTCCTTC 58.982 45.833 0.00 0.00 36.09 3.46
4482 4629 5.013258 AGTTACTGAAGTACTCCCTCCTT 57.987 43.478 0.00 0.00 0.00 3.36
4483 4630 4.678538 AGTTACTGAAGTACTCCCTCCT 57.321 45.455 0.00 0.00 0.00 3.69
4484 4631 5.951148 AGTAAGTTACTGAAGTACTCCCTCC 59.049 44.000 14.82 0.00 37.69 4.30
4485 4632 7.314393 CAAGTAAGTTACTGAAGTACTCCCTC 58.686 42.308 16.22 0.00 39.39 4.30
4486 4633 6.210984 CCAAGTAAGTTACTGAAGTACTCCCT 59.789 42.308 16.22 0.00 39.39 4.20
4487 4634 6.014755 ACCAAGTAAGTTACTGAAGTACTCCC 60.015 42.308 16.22 0.00 39.39 4.30
4488 4635 6.990798 ACCAAGTAAGTTACTGAAGTACTCC 58.009 40.000 16.22 0.00 39.39 3.85
4489 4636 9.971922 TTAACCAAGTAAGTTACTGAAGTACTC 57.028 33.333 16.22 0.00 39.39 2.59
4493 4640 9.708092 GAGATTAACCAAGTAAGTTACTGAAGT 57.292 33.333 16.22 10.85 39.39 3.01
4494 4641 9.706691 TGAGATTAACCAAGTAAGTTACTGAAG 57.293 33.333 16.22 10.27 39.39 3.02
4542 4689 5.472148 GTCAAACATCAATTTCAGGCATCA 58.528 37.500 0.00 0.00 0.00 3.07
4780 4927 0.594028 CAGGCATGCATCATCAACGC 60.594 55.000 21.36 0.00 0.00 4.84
4781 4928 1.018910 TCAGGCATGCATCATCAACG 58.981 50.000 21.36 0.00 0.00 4.10
4868 5020 0.827507 AATCCGCAGCAGGTTTTGGT 60.828 50.000 0.00 0.00 38.24 3.67
5154 5308 9.770097 TCAATTACAAATTTATGACAAAAGCCA 57.230 25.926 0.00 0.00 0.00 4.75
5187 5341 9.548631 TCTATTACAAATTTATCCCCCACAAAA 57.451 29.630 0.00 0.00 0.00 2.44
5188 5342 9.722317 ATCTATTACAAATTTATCCCCCACAAA 57.278 29.630 0.00 0.00 0.00 2.83
5189 5343 9.142014 CATCTATTACAAATTTATCCCCCACAA 57.858 33.333 0.00 0.00 0.00 3.33
5190 5344 8.285891 ACATCTATTACAAATTTATCCCCCACA 58.714 33.333 0.00 0.00 0.00 4.17
5191 5345 8.706322 ACATCTATTACAAATTTATCCCCCAC 57.294 34.615 0.00 0.00 0.00 4.61
5192 5346 9.362151 GAACATCTATTACAAATTTATCCCCCA 57.638 33.333 0.00 0.00 0.00 4.96
5193 5347 9.362151 TGAACATCTATTACAAATTTATCCCCC 57.638 33.333 0.00 0.00 0.00 5.40
5233 5419 6.937436 AGGTTATTTTGATCGGGATACAAC 57.063 37.500 0.00 0.00 39.74 3.32
5234 5420 6.887545 ACAAGGTTATTTTGATCGGGATACAA 59.112 34.615 0.00 0.00 39.74 2.41
5237 5423 5.825679 CCACAAGGTTATTTTGATCGGGATA 59.174 40.000 0.00 0.00 0.00 2.59
5238 5424 4.644685 CCACAAGGTTATTTTGATCGGGAT 59.355 41.667 0.00 0.00 0.00 3.85
5240 5426 4.370364 CCACAAGGTTATTTTGATCGGG 57.630 45.455 0.00 0.00 0.00 5.14
5260 5446 2.159028 GCACTCTCTTCAGGTATCCACC 60.159 54.545 0.00 0.00 46.19 4.61
5262 5448 2.111384 GGCACTCTCTTCAGGTATCCA 58.889 52.381 0.00 0.00 0.00 3.41
5263 5449 2.111384 TGGCACTCTCTTCAGGTATCC 58.889 52.381 0.00 0.00 0.00 2.59
5408 6670 0.327576 TCCCCTTCCTCCCAAGATCC 60.328 60.000 0.00 0.00 0.00 3.36
5409 6671 1.423161 CATCCCCTTCCTCCCAAGATC 59.577 57.143 0.00 0.00 0.00 2.75
5450 6714 4.929808 ACCTTATGAACACAAGTCGTCATC 59.070 41.667 0.00 0.00 0.00 2.92
5462 6726 5.860941 TTTTTGAAGCCACCTTATGAACA 57.139 34.783 0.00 0.00 0.00 3.18
5481 6745 2.115427 CCTGGTCACCCCAAACTTTTT 58.885 47.619 0.00 0.00 44.65 1.94
5483 6747 0.105709 CCCTGGTCACCCCAAACTTT 60.106 55.000 0.00 0.00 44.65 2.66
5494 6758 1.630369 CATCTTGACTTCCCCTGGTCA 59.370 52.381 0.00 0.00 40.17 4.02
5498 6762 2.026449 AGCTTCATCTTGACTTCCCCTG 60.026 50.000 0.00 0.00 0.00 4.45
5509 6773 8.734386 CCAAGTGTCTTTAATTAGCTTCATCTT 58.266 33.333 0.00 0.00 0.00 2.40
5511 6775 8.045176 ACCAAGTGTCTTTAATTAGCTTCATC 57.955 34.615 0.00 0.00 0.00 2.92
5513 6777 7.817418 AACCAAGTGTCTTTAATTAGCTTCA 57.183 32.000 0.00 0.00 0.00 3.02
5522 6786 5.426504 TGTTCCGTAACCAAGTGTCTTTAA 58.573 37.500 0.00 0.00 34.49 1.52
5523 6787 5.021033 TGTTCCGTAACCAAGTGTCTTTA 57.979 39.130 0.00 0.00 34.49 1.85
5524 6788 3.876341 TGTTCCGTAACCAAGTGTCTTT 58.124 40.909 0.00 0.00 34.49 2.52
5525 6789 3.547054 TGTTCCGTAACCAAGTGTCTT 57.453 42.857 0.00 0.00 34.49 3.01
5539 6803 5.280945 AGTTGTTTTGACATCATTGTTCCG 58.719 37.500 0.00 0.00 35.79 4.30
5544 6808 9.409312 TGCTTAATAGTTGTTTTGACATCATTG 57.591 29.630 0.00 0.00 0.00 2.82
5580 6846 1.202557 CCCGGTATAGGCGCTAACAAA 60.203 52.381 7.64 0.00 0.00 2.83
5583 6849 1.291272 CCCCGGTATAGGCGCTAAC 59.709 63.158 7.64 0.00 0.00 2.34
5589 6855 0.763035 ATGTTGACCCCGGTATAGGC 59.237 55.000 0.00 0.00 0.00 3.93
5598 6864 5.823045 CCTTGTATTTCTCTATGTTGACCCC 59.177 44.000 0.00 0.00 0.00 4.95
5610 6882 5.473504 TCTTCTTTGCCACCTTGTATTTCTC 59.526 40.000 0.00 0.00 0.00 2.87
5625 6897 3.181500 ACTCGTTTTGTGGTCTTCTTTGC 60.181 43.478 0.00 0.00 0.00 3.68
5637 6909 4.214545 TGTTTCACTCACAACTCGTTTTGT 59.785 37.500 0.00 0.00 40.46 2.83
5642 6914 2.936498 CCTTGTTTCACTCACAACTCGT 59.064 45.455 0.00 0.00 30.83 4.18
5644 6916 2.618709 CCCCTTGTTTCACTCACAACTC 59.381 50.000 0.00 0.00 30.83 3.01
5646 6918 2.357952 GACCCCTTGTTTCACTCACAAC 59.642 50.000 0.00 0.00 30.83 3.32
5647 6919 2.025793 TGACCCCTTGTTTCACTCACAA 60.026 45.455 0.00 0.00 33.09 3.33
5665 6937 5.935206 TGATAGAGATCCTCATACGTCTGAC 59.065 44.000 0.00 0.00 32.06 3.51
5668 6940 4.941263 GCTGATAGAGATCCTCATACGTCT 59.059 45.833 0.00 0.00 32.06 4.18
5670 6942 4.657013 TGCTGATAGAGATCCTCATACGT 58.343 43.478 0.00 0.00 32.06 3.57
5675 6947 9.935241 GTATTTAAATGCTGATAGAGATCCTCA 57.065 33.333 11.05 0.00 32.06 3.86
5676 6948 9.081997 CGTATTTAAATGCTGATAGAGATCCTC 57.918 37.037 11.05 0.00 0.00 3.71
5677 6949 8.807118 TCGTATTTAAATGCTGATAGAGATCCT 58.193 33.333 11.05 0.00 0.00 3.24
5678 6950 8.988064 TCGTATTTAAATGCTGATAGAGATCC 57.012 34.615 11.05 0.00 0.00 3.36
5680 6952 9.429359 CCTTCGTATTTAAATGCTGATAGAGAT 57.571 33.333 11.05 0.00 0.00 2.75
5681 6953 8.638873 TCCTTCGTATTTAAATGCTGATAGAGA 58.361 33.333 11.05 0.00 0.00 3.10
5682 6954 8.818141 TCCTTCGTATTTAAATGCTGATAGAG 57.182 34.615 11.05 6.27 0.00 2.43
5683 6955 9.261180 CTTCCTTCGTATTTAAATGCTGATAGA 57.739 33.333 11.05 8.11 0.00 1.98
5684 6956 9.261180 TCTTCCTTCGTATTTAAATGCTGATAG 57.739 33.333 11.05 10.22 0.00 2.08
5685 6957 9.042008 GTCTTCCTTCGTATTTAAATGCTGATA 57.958 33.333 11.05 3.28 0.00 2.15
5686 6958 7.552687 TGTCTTCCTTCGTATTTAAATGCTGAT 59.447 33.333 11.05 0.00 0.00 2.90
5687 6959 6.876789 TGTCTTCCTTCGTATTTAAATGCTGA 59.123 34.615 11.05 8.45 0.00 4.26
5688 6960 7.072177 TGTCTTCCTTCGTATTTAAATGCTG 57.928 36.000 11.05 6.41 0.00 4.41
5689 6961 7.865706 ATGTCTTCCTTCGTATTTAAATGCT 57.134 32.000 11.05 0.00 0.00 3.79
5690 6962 9.651718 CTTATGTCTTCCTTCGTATTTAAATGC 57.348 33.333 11.05 8.54 0.00 3.56
5693 6965 9.932207 TCACTTATGTCTTCCTTCGTATTTAAA 57.068 29.630 0.00 0.00 0.00 1.52
5694 6966 9.362539 GTCACTTATGTCTTCCTTCGTATTTAA 57.637 33.333 0.00 0.00 0.00 1.52
5695 6967 8.525316 TGTCACTTATGTCTTCCTTCGTATTTA 58.475 33.333 0.00 0.00 0.00 1.40
5696 6968 7.383687 TGTCACTTATGTCTTCCTTCGTATTT 58.616 34.615 0.00 0.00 0.00 1.40
5697 6969 6.931838 TGTCACTTATGTCTTCCTTCGTATT 58.068 36.000 0.00 0.00 0.00 1.89
5698 6970 6.525578 TGTCACTTATGTCTTCCTTCGTAT 57.474 37.500 0.00 0.00 0.00 3.06
5699 6971 5.970317 TGTCACTTATGTCTTCCTTCGTA 57.030 39.130 0.00 0.00 0.00 3.43
5700 6972 4.866508 TGTCACTTATGTCTTCCTTCGT 57.133 40.909 0.00 0.00 0.00 3.85
5701 6973 6.727824 AAATGTCACTTATGTCTTCCTTCG 57.272 37.500 0.00 0.00 0.00 3.79
5717 6989 9.489084 CGGATCTTGGTAATCTTATAAATGTCA 57.511 33.333 0.00 0.00 0.00 3.58
5718 6990 9.706691 TCGGATCTTGGTAATCTTATAAATGTC 57.293 33.333 0.00 0.00 0.00 3.06
5719 6991 9.712305 CTCGGATCTTGGTAATCTTATAAATGT 57.288 33.333 0.00 0.00 0.00 2.71
5720 6992 9.929180 TCTCGGATCTTGGTAATCTTATAAATG 57.071 33.333 0.00 0.00 0.00 2.32
5722 6994 9.363401 TCTCTCGGATCTTGGTAATCTTATAAA 57.637 33.333 0.00 0.00 0.00 1.40
5723 6995 8.935614 TCTCTCGGATCTTGGTAATCTTATAA 57.064 34.615 0.00 0.00 0.00 0.98
5724 6996 7.612244 CCTCTCTCGGATCTTGGTAATCTTATA 59.388 40.741 0.00 0.00 0.00 0.98
5725 6997 6.435904 CCTCTCTCGGATCTTGGTAATCTTAT 59.564 42.308 0.00 0.00 0.00 1.73
5726 6998 5.770663 CCTCTCTCGGATCTTGGTAATCTTA 59.229 44.000 0.00 0.00 0.00 2.10
5727 6999 4.586841 CCTCTCTCGGATCTTGGTAATCTT 59.413 45.833 0.00 0.00 0.00 2.40
5728 7000 4.141135 TCCTCTCTCGGATCTTGGTAATCT 60.141 45.833 0.00 0.00 0.00 2.40
5729 7001 4.145807 TCCTCTCTCGGATCTTGGTAATC 58.854 47.826 0.00 0.00 0.00 1.75
5730 7002 4.186077 TCCTCTCTCGGATCTTGGTAAT 57.814 45.455 0.00 0.00 0.00 1.89
5731 7003 3.664551 TCCTCTCTCGGATCTTGGTAA 57.335 47.619 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.