Multiple sequence alignment - TraesCS5D01G198700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G198700 chr5D 100.000 6971 0 0 1 6971 301582957 301575987 0.000000e+00 12874.0
1 TraesCS5D01G198700 chr5D 81.385 231 32 9 2882 3105 383639317 383639543 2.000000e-40 178.0
2 TraesCS5D01G198700 chr5D 97.030 101 2 1 1543 1642 134485732 134485632 1.200000e-37 169.0
3 TraesCS5D01G198700 chr5D 94.340 106 5 1 3472 3577 343630506 343630402 2.010000e-35 161.0
4 TraesCS5D01G198700 chr5D 92.857 42 1 2 6099 6140 468170477 468170516 7.550000e-05 60.2
5 TraesCS5D01G198700 chr5A 95.050 3434 83 19 3574 6968 395912255 395915640 0.000000e+00 5319.0
6 TraesCS5D01G198700 chr5A 93.973 1875 62 18 1636 3477 395910400 395912256 0.000000e+00 2789.0
7 TraesCS5D01G198700 chr5A 87.533 1532 92 57 85 1552 395908896 395910392 0.000000e+00 1679.0
8 TraesCS5D01G198700 chr5A 90.278 72 7 0 6818 6889 619460382 619460453 2.070000e-15 95.3
9 TraesCS5D01G198700 chr5A 97.368 38 0 1 6102 6139 363848903 363848867 5.840000e-06 63.9
10 TraesCS5D01G198700 chr5B 95.353 2539 97 10 3574 6109 344619981 344617461 0.000000e+00 4015.0
11 TraesCS5D01G198700 chr5B 90.617 1588 78 34 1 1556 344623298 344621750 0.000000e+00 2041.0
12 TraesCS5D01G198700 chr5B 92.721 1099 32 14 2401 3477 344621052 344619980 0.000000e+00 1543.0
13 TraesCS5D01G198700 chr5B 89.222 668 44 15 1641 2292 344621744 344621089 0.000000e+00 809.0
14 TraesCS5D01G198700 chr5B 96.419 391 9 3 6432 6817 344616903 344616513 2.120000e-179 640.0
15 TraesCS5D01G198700 chr5B 82.126 207 31 4 2902 3106 459483772 459483974 9.300000e-39 172.0
16 TraesCS5D01G198700 chr5B 90.541 74 6 1 6820 6892 221399746 221399673 5.760000e-16 97.1
17 TraesCS5D01G198700 chr2B 85.859 198 20 6 2902 3096 250264647 250264455 3.300000e-48 204.0
18 TraesCS5D01G198700 chr2B 92.593 108 6 2 1541 1647 696361638 696361744 3.370000e-33 154.0
19 TraesCS5D01G198700 chr2B 90.411 73 7 0 6817 6889 69970794 69970866 5.760000e-16 97.1
20 TraesCS5D01G198700 chr2B 86.517 89 11 1 6816 6903 402689029 402688941 5.760000e-16 97.1
21 TraesCS5D01G198700 chr2B 92.105 38 3 0 269 306 758596274 758596237 4.000000e-03 54.7
22 TraesCS5D01G198700 chr2B 100.000 28 0 0 3379 3406 338733740 338733767 1.300000e-02 52.8
23 TraesCS5D01G198700 chr2D 83.406 229 26 8 2883 3106 194457223 194457002 1.190000e-47 202.0
24 TraesCS5D01G198700 chr2D 96.000 100 4 0 3474 3573 145927789 145927888 5.590000e-36 163.0
25 TraesCS5D01G198700 chr2D 89.041 73 8 0 6820 6892 566849854 566849782 2.680000e-14 91.6
26 TraesCS5D01G198700 chr2D 97.297 37 0 1 6102 6138 267699902 267699867 2.100000e-05 62.1
27 TraesCS5D01G198700 chr2D 100.000 28 0 0 3379 3406 249879447 249879474 1.300000e-02 52.8
28 TraesCS5D01G198700 chr4A 90.909 132 9 3 6817 6946 80843540 80843670 2.580000e-39 174.0
29 TraesCS5D01G198700 chr4A 96.040 101 4 0 3475 3575 584931058 584930958 1.560000e-36 165.0
30 TraesCS5D01G198700 chr4A 91.304 69 6 0 6820 6888 134085021 134084953 2.070000e-15 95.3
31 TraesCS5D01G198700 chr4A 97.297 37 0 1 6103 6139 521841925 521841890 2.100000e-05 62.1
32 TraesCS5D01G198700 chr3D 82.160 213 27 6 2882 3089 206978748 206978954 9.300000e-39 172.0
33 TraesCS5D01G198700 chr3D 87.838 74 8 1 6820 6892 699187 699114 1.250000e-12 86.1
34 TraesCS5D01G198700 chr3D 87.671 73 9 0 6820 6892 515251309 515251237 1.250000e-12 86.1
35 TraesCS5D01G198700 chr3D 97.368 38 0 1 6102 6139 455855448 455855412 5.840000e-06 63.9
36 TraesCS5D01G198700 chr3B 81.944 216 28 5 2882 3092 284678673 284678464 9.300000e-39 172.0
37 TraesCS5D01G198700 chr3B 96.907 97 2 1 1544 1640 421670491 421670586 2.010000e-35 161.0
38 TraesCS5D01G198700 chr3B 93.458 107 6 1 3471 3576 549335560 549335666 2.600000e-34 158.0
39 TraesCS5D01G198700 chr3B 91.429 70 6 0 6820 6889 773465507 773465438 5.760000e-16 97.1
40 TraesCS5D01G198700 chr7D 90.076 131 11 2 3466 3595 113581060 113581189 1.200000e-37 169.0
41 TraesCS5D01G198700 chr7D 97.917 96 2 0 1551 1646 540399156 540399251 4.330000e-37 167.0
42 TraesCS5D01G198700 chr7D 94.340 106 5 1 3476 3581 69595849 69595745 2.010000e-35 161.0
43 TraesCS5D01G198700 chr7D 89.041 73 7 1 6820 6892 204812106 204812035 9.630000e-14 89.8
44 TraesCS5D01G198700 chr7D 97.368 38 0 1 6102 6139 120323623 120323587 5.840000e-06 63.9
45 TraesCS5D01G198700 chrUn 98.925 93 1 0 1555 1647 37006363 37006455 4.330000e-37 167.0
46 TraesCS5D01G198700 chrUn 98.925 93 1 0 1555 1647 38258584 38258676 4.330000e-37 167.0
47 TraesCS5D01G198700 chrUn 98.925 93 1 0 1555 1647 196709646 196709554 4.330000e-37 167.0
48 TraesCS5D01G198700 chrUn 94.444 36 1 1 6104 6139 60421098 60421064 4.000000e-03 54.7
49 TraesCS5D01G198700 chr3A 96.875 96 3 0 1554 1649 55217166 55217071 2.010000e-35 161.0
50 TraesCS5D01G198700 chr3A 81.019 216 30 5 2882 3092 265542533 265542324 2.010000e-35 161.0
51 TraesCS5D01G198700 chr6A 93.519 108 6 1 1541 1648 152028476 152028370 7.240000e-35 159.0
52 TraesCS5D01G198700 chr6A 90.000 70 7 0 6820 6889 180741743 180741812 2.680000e-14 91.6
53 TraesCS5D01G198700 chr6A 88.158 76 7 2 6814 6889 493157282 493157355 9.630000e-14 89.8
54 TraesCS5D01G198700 chr6A 86.301 73 10 0 6820 6892 112252442 112252370 5.800000e-11 80.5
55 TraesCS5D01G198700 chr6A 85.915 71 9 1 6820 6889 13417303 13417373 2.700000e-09 75.0
56 TraesCS5D01G198700 chr6A 97.059 34 1 0 6099 6132 153372896 153372929 2.720000e-04 58.4
57 TraesCS5D01G198700 chr1A 95.918 98 4 0 3475 3572 367872333 367872236 7.240000e-35 159.0
58 TraesCS5D01G198700 chr1A 89.041 73 7 1 6816 6888 567928639 567928710 9.630000e-14 89.8
59 TraesCS5D01G198700 chr6B 93.458 107 5 2 3473 3578 544666943 544667048 2.600000e-34 158.0
60 TraesCS5D01G198700 chr6B 97.561 41 0 1 6099 6139 337237163 337237202 1.250000e-07 69.4
61 TraesCS5D01G198700 chr6B 97.368 38 0 1 6102 6139 225525538 225525502 5.840000e-06 63.9
62 TraesCS5D01G198700 chr6B 95.122 41 1 1 6099 6139 534953755 534953794 5.840000e-06 63.9
63 TraesCS5D01G198700 chr1B 93.396 106 6 1 3476 3580 629828512 629828617 9.360000e-34 156.0
64 TraesCS5D01G198700 chr1B 88.073 109 13 0 2770 2878 26627463 26627355 5.670000e-26 130.0
65 TraesCS5D01G198700 chr4D 89.815 108 11 0 2771 2878 119237698 119237591 9.430000e-29 139.0
66 TraesCS5D01G198700 chr4D 89.855 69 7 0 6820 6888 219343294 219343226 9.630000e-14 89.8
67 TraesCS5D01G198700 chr4D 88.571 70 8 0 6820 6889 384117694 384117763 1.250000e-12 86.1
68 TraesCS5D01G198700 chr4D 92.683 41 2 1 6099 6139 54795958 54795997 2.720000e-04 58.4
69 TraesCS5D01G198700 chr4D 94.737 38 1 1 6102 6139 100798666 100798630 2.720000e-04 58.4
70 TraesCS5D01G198700 chr4D 94.737 38 1 1 6102 6139 482703614 482703578 2.720000e-04 58.4
71 TraesCS5D01G198700 chr1D 85.577 104 15 0 2775 2878 18202551 18202654 7.390000e-20 110.0
72 TraesCS5D01G198700 chr1D 95.455 44 2 0 6814 6857 232185277 232185320 3.490000e-08 71.3
73 TraesCS5D01G198700 chr1D 97.222 36 0 1 6104 6139 317429618 317429584 7.550000e-05 60.2
74 TraesCS5D01G198700 chr1D 92.683 41 2 1 6099 6139 307342851 307342890 2.720000e-04 58.4
75 TraesCS5D01G198700 chr4B 90.411 73 7 0 6820 6892 604653857 604653785 5.760000e-16 97.1
76 TraesCS5D01G198700 chr4B 87.179 78 9 1 6813 6889 62008157 62008234 3.460000e-13 87.9
77 TraesCS5D01G198700 chr6D 89.333 75 6 2 6815 6889 107720 107792 7.440000e-15 93.5
78 TraesCS5D01G198700 chr6D 87.342 79 10 0 6814 6892 109734513 109734435 2.680000e-14 91.6
79 TraesCS5D01G198700 chr6D 97.436 39 0 1 6099 6137 249454580 249454617 1.620000e-06 65.8
80 TraesCS5D01G198700 chr6D 97.368 38 0 1 6102 6139 4632459 4632423 5.840000e-06 63.9
81 TraesCS5D01G198700 chr6D 94.737 38 1 1 6099 6136 137159777 137159813 2.720000e-04 58.4
82 TraesCS5D01G198700 chr6D 94.737 38 1 1 6102 6139 138907139 138907103 2.720000e-04 58.4
83 TraesCS5D01G198700 chr6D 94.444 36 1 1 6104 6139 109893756 109893790 4.000000e-03 54.7
84 TraesCS5D01G198700 chr6D 100.000 29 0 0 6102 6130 406207293 406207265 4.000000e-03 54.7
85 TraesCS5D01G198700 chr7B 89.041 73 8 0 6817 6889 677474399 677474471 2.680000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G198700 chr5D 301575987 301582957 6970 True 12874.000000 12874 100.000000 1 6971 1 chr5D.!!$R2 6970
1 TraesCS5D01G198700 chr5A 395908896 395915640 6744 False 3262.333333 5319 92.185333 85 6968 3 chr5A.!!$F2 6883
2 TraesCS5D01G198700 chr5B 344616513 344623298 6785 True 1809.600000 4015 92.866400 1 6817 5 chr5B.!!$R2 6816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 585 0.468226 CCCTTTCTGCAGCCGGTATA 59.532 55.000 9.47 0.0 0.00 1.47 F
1569 1649 0.116342 TTGCTACTCCCTCTGTCCCA 59.884 55.000 0.00 0.0 0.00 4.37 F
2585 2696 0.107214 TGCCACCCTAGCAATGTAGC 60.107 55.000 0.00 0.0 37.28 3.58 F
2795 2923 1.076549 TGGACCAGCCCATCAAACC 59.923 57.895 0.00 0.0 34.97 3.27 F
4452 4586 0.886490 CACCAGGCACTCCTCAACAC 60.886 60.000 0.00 0.0 41.93 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 2024 0.121197 AGGGGTGGGAGATTCCTCAA 59.879 55.0 0.00 0.0 41.20 3.02 R
3252 3385 0.109723 ACCAAAGCCGAGGCACTTAA 59.890 50.0 17.18 0.0 41.55 1.85 R
3996 4130 0.400213 TAGGCCACTGGACAACCTTG 59.600 55.0 5.01 0.0 37.04 3.61 R
4738 4872 0.034186 ACATGATTCCGTGGTGGCAT 60.034 50.0 0.00 0.0 37.80 4.40 R
6095 6236 0.179119 GCTACGTGCACCGGTCTATT 60.179 55.0 12.15 0.0 42.24 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.021695 GGGGTTTCAATACCTTAGCACC 58.978 50.000 0.00 0.00 38.30 5.01
36 37 3.562609 GGGGTTTCAATACCTTAGCACCA 60.563 47.826 0.00 0.00 38.30 4.17
46 48 1.490490 CCTTAGCACCATCCAAGCCTA 59.510 52.381 0.00 0.00 0.00 3.93
104 106 5.048083 GTGTCCTAACCAAATGAAGAATGCA 60.048 40.000 0.00 0.00 0.00 3.96
156 159 3.132824 TGGCCATCAGTACTACATCAGTG 59.867 47.826 0.00 0.00 38.24 3.66
234 237 5.182001 TCAAATCTGTTCTGCCTTTAGCTTC 59.818 40.000 0.00 0.00 44.23 3.86
237 240 3.838317 TCTGTTCTGCCTTTAGCTTCCTA 59.162 43.478 0.00 0.00 44.23 2.94
238 241 4.471386 TCTGTTCTGCCTTTAGCTTCCTAT 59.529 41.667 0.00 0.00 44.23 2.57
239 242 5.661312 TCTGTTCTGCCTTTAGCTTCCTATA 59.339 40.000 0.00 0.00 44.23 1.31
266 269 3.004862 TGCATCATACTGTCACAAGCAG 58.995 45.455 0.00 0.00 39.67 4.24
428 437 7.000472 AGTCAATACCTTATCACCATGGATTG 59.000 38.462 21.47 14.05 0.00 2.67
429 438 6.998074 GTCAATACCTTATCACCATGGATTGA 59.002 38.462 21.47 16.13 30.98 2.57
430 439 7.667219 GTCAATACCTTATCACCATGGATTGAT 59.333 37.037 21.47 19.84 36.43 2.57
431 440 8.226810 TCAATACCTTATCACCATGGATTGATT 58.773 33.333 21.47 5.69 34.28 2.57
500 514 0.992072 CGTCAGCATGGTACGTCAAG 59.008 55.000 14.58 0.00 36.16 3.02
521 535 3.971702 GCAGCACACCCTTCCCCT 61.972 66.667 0.00 0.00 0.00 4.79
569 585 0.468226 CCCTTTCTGCAGCCGGTATA 59.532 55.000 9.47 0.00 0.00 1.47
603 619 1.908344 TGCATTTTCTACAGCTGGCA 58.092 45.000 19.93 12.20 0.00 4.92
672 688 2.851263 ACAGGACTGTCGCCATTAAA 57.149 45.000 0.00 0.00 40.24 1.52
954 995 1.271054 GGCTGGTGAGCTCTCTTCAAA 60.271 52.381 16.19 0.00 45.44 2.69
1078 1140 0.901124 AAGTGGACAGCTAGAGCCAG 59.099 55.000 0.00 0.00 43.38 4.85
1080 1142 2.362369 TGGACAGCTAGAGCCAGCC 61.362 63.158 0.00 0.00 42.84 4.85
1081 1143 2.362369 GGACAGCTAGAGCCAGCCA 61.362 63.158 0.00 0.00 42.84 4.75
1083 1145 2.188994 CAGCTAGAGCCAGCCACC 59.811 66.667 0.00 0.00 42.84 4.61
1091 1153 4.643387 GCCAGCCACCACCGTCTT 62.643 66.667 0.00 0.00 0.00 3.01
1093 1155 2.358737 CAGCCACCACCGTCTTCC 60.359 66.667 0.00 0.00 0.00 3.46
1094 1156 2.526873 AGCCACCACCGTCTTCCT 60.527 61.111 0.00 0.00 0.00 3.36
1095 1157 2.358737 GCCACCACCGTCTTCCTG 60.359 66.667 0.00 0.00 0.00 3.86
1096 1158 2.347490 CCACCACCGTCTTCCTGG 59.653 66.667 0.00 0.00 0.00 4.45
1098 1160 4.003788 ACCACCGTCTTCCTGGCG 62.004 66.667 0.00 0.00 44.42 5.69
1104 1166 2.896443 GTCTTCCTGGCGAGAGGG 59.104 66.667 0.00 0.00 33.41 4.30
1105 1167 2.364317 TCTTCCTGGCGAGAGGGG 60.364 66.667 0.00 0.00 33.41 4.79
1106 1168 2.364317 CTTCCTGGCGAGAGGGGA 60.364 66.667 0.00 0.00 33.41 4.81
1107 1169 2.364317 TTCCTGGCGAGAGGGGAG 60.364 66.667 0.00 0.00 33.41 4.30
1108 1170 3.984186 TTCCTGGCGAGAGGGGAGG 62.984 68.421 0.00 0.00 33.41 4.30
1109 1171 4.465446 CCTGGCGAGAGGGGAGGA 62.465 72.222 0.00 0.00 0.00 3.71
1110 1172 2.364317 CTGGCGAGAGGGGAGGAA 60.364 66.667 0.00 0.00 0.00 3.36
1111 1173 2.364317 TGGCGAGAGGGGAGGAAG 60.364 66.667 0.00 0.00 0.00 3.46
1112 1174 3.157949 GGCGAGAGGGGAGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
1113 1175 3.157949 GCGAGAGGGGAGGAAGGG 61.158 72.222 0.00 0.00 0.00 3.95
1114 1176 2.444895 CGAGAGGGGAGGAAGGGG 60.445 72.222 0.00 0.00 0.00 4.79
1115 1177 2.770475 GAGAGGGGAGGAAGGGGC 60.770 72.222 0.00 0.00 0.00 5.80
1116 1178 3.626596 AGAGGGGAGGAAGGGGCA 61.627 66.667 0.00 0.00 0.00 5.36
1141 1203 2.435586 CCTGGCAGGTGCTTCTCG 60.436 66.667 25.74 0.00 41.70 4.04
1160 1222 2.409870 GGTTCCATGGCTTCCAGCG 61.410 63.158 6.96 0.00 43.62 5.18
1161 1223 1.377202 GTTCCATGGCTTCCAGCGA 60.377 57.895 6.96 0.00 43.62 4.93
1162 1224 1.078214 TTCCATGGCTTCCAGCGAG 60.078 57.895 6.96 0.00 43.62 5.03
1163 1225 2.515523 CCATGGCTTCCAGCGAGG 60.516 66.667 0.00 0.00 43.62 4.63
1164 1226 2.515523 CATGGCTTCCAGCGAGGG 60.516 66.667 0.00 0.00 43.62 4.30
1232 1300 0.179056 CGGATTATCCCAAGGTGCGT 60.179 55.000 5.56 0.00 31.13 5.24
1261 1333 4.783621 TGCCTCCATGCTGTCCGC 62.784 66.667 0.00 0.00 39.77 5.54
1350 1422 1.688772 CTGCCTGGGAGATTGATTGG 58.311 55.000 10.00 0.00 0.00 3.16
1409 1484 3.864789 TCTGTTTGCCTTCTTTCTCCT 57.135 42.857 0.00 0.00 0.00 3.69
1441 1520 3.870274 TGCTCATTCAGATTCAGTGGAG 58.130 45.455 0.00 0.00 0.00 3.86
1507 1586 6.811665 CCCTCGGATTATGTTTTTCCTTTTTC 59.188 38.462 0.00 0.00 0.00 2.29
1524 1604 8.179509 TCCTTTTTCTAATAGATAGAGGACCG 57.820 38.462 13.38 0.00 41.59 4.79
1535 1615 0.824759 AGAGGACCGTGCACTATTCC 59.175 55.000 16.19 16.42 0.00 3.01
1559 1639 9.959721 TCCCATCTTTATATATTTTGCTACTCC 57.040 33.333 0.00 0.00 0.00 3.85
1560 1640 9.178758 CCCATCTTTATATATTTTGCTACTCCC 57.821 37.037 0.00 0.00 0.00 4.30
1561 1641 9.965902 CCATCTTTATATATTTTGCTACTCCCT 57.034 33.333 0.00 0.00 0.00 4.20
1566 1646 9.998106 TTTATATATTTTGCTACTCCCTCTGTC 57.002 33.333 0.00 0.00 0.00 3.51
1567 1647 3.636153 ATTTTGCTACTCCCTCTGTCC 57.364 47.619 0.00 0.00 0.00 4.02
1568 1648 1.276622 TTTGCTACTCCCTCTGTCCC 58.723 55.000 0.00 0.00 0.00 4.46
1569 1649 0.116342 TTGCTACTCCCTCTGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
1570 1650 0.116342 TGCTACTCCCTCTGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
1571 1651 1.276622 GCTACTCCCTCTGTCCCAAA 58.723 55.000 0.00 0.00 0.00 3.28
1572 1652 1.628846 GCTACTCCCTCTGTCCCAAAA 59.371 52.381 0.00 0.00 0.00 2.44
1573 1653 2.239907 GCTACTCCCTCTGTCCCAAAAT 59.760 50.000 0.00 0.00 0.00 1.82
1574 1654 3.454812 GCTACTCCCTCTGTCCCAAAATA 59.545 47.826 0.00 0.00 0.00 1.40
1575 1655 4.103311 GCTACTCCCTCTGTCCCAAAATAT 59.897 45.833 0.00 0.00 0.00 1.28
1576 1656 5.307196 GCTACTCCCTCTGTCCCAAAATATA 59.693 44.000 0.00 0.00 0.00 0.86
1577 1657 6.183361 GCTACTCCCTCTGTCCCAAAATATAA 60.183 42.308 0.00 0.00 0.00 0.98
1578 1658 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
1579 1659 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
1580 1660 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
1581 1661 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
1582 1662 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
1583 1663 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
1584 1664 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
1585 1665 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
1586 1666 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
1587 1667 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
1601 1681 8.707938 AAGAACGTTTTTAACACTACACTAGT 57.292 30.769 0.46 0.00 40.28 2.57
1614 1694 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
1615 1695 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
1616 1696 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
1617 1697 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
1618 1698 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
1619 1699 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
1620 1700 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
1626 1706 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
1627 1707 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
1628 1708 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
1629 1709 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
1630 1710 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
1631 1711 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
1632 1712 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
1633 1713 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
1634 1714 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
1709 1791 1.009829 CGTGCCTGTTTATCTGGAGC 58.990 55.000 0.00 0.00 37.33 4.70
1750 1840 5.103515 ACCAGGCCCTGATGAAATAGTTAAT 60.104 40.000 13.74 0.00 32.44 1.40
1797 1896 3.802866 TGGGACATTCTTTTGCCAAAAC 58.197 40.909 0.00 0.00 0.00 2.43
1800 1899 4.637977 GGGACATTCTTTTGCCAAAACAAA 59.362 37.500 0.00 0.00 37.74 2.83
1801 1900 5.124617 GGGACATTCTTTTGCCAAAACAAAA 59.875 36.000 0.00 2.80 44.90 2.44
1802 1901 6.349694 GGGACATTCTTTTGCCAAAACAAAAA 60.350 34.615 0.00 0.00 45.96 1.94
1826 1925 3.321682 ACAAAGCCAAGCTAGAATTTGCA 59.678 39.130 11.95 0.00 38.25 4.08
1828 1927 3.863142 AGCCAAGCTAGAATTTGCAAG 57.137 42.857 0.00 0.00 36.99 4.01
1836 1935 5.405797 AGCTAGAATTTGCAAGCTTTAAGC 58.594 37.500 9.18 9.18 42.52 3.09
1848 1947 3.965292 GCTTTAAGCGGGAAATACTCC 57.035 47.619 0.00 0.00 44.54 3.85
1859 1970 5.243207 CGGGAAATACTCCTAACAAACAGT 58.757 41.667 0.00 0.00 44.68 3.55
1860 1971 6.400568 CGGGAAATACTCCTAACAAACAGTA 58.599 40.000 0.00 0.00 44.68 2.74
1861 1972 6.312180 CGGGAAATACTCCTAACAAACAGTAC 59.688 42.308 0.00 0.00 44.68 2.73
1913 2024 3.055719 CCAAGCCGCCATTCACGT 61.056 61.111 0.00 0.00 0.00 4.49
1927 2038 1.639722 TCACGTTGAGGAATCTCCCA 58.360 50.000 0.00 0.00 37.19 4.37
2122 2233 2.087646 GAGAACTTCCACATTGGCCTC 58.912 52.381 3.32 0.00 37.47 4.70
2292 2403 6.127054 TGAGGTTCCGTATCATCATTCTTCTT 60.127 38.462 0.00 0.00 0.00 2.52
2294 2405 7.792032 AGGTTCCGTATCATCATTCTTCTTAA 58.208 34.615 0.00 0.00 0.00 1.85
2295 2406 7.928706 AGGTTCCGTATCATCATTCTTCTTAAG 59.071 37.037 0.00 0.00 0.00 1.85
2296 2407 7.926555 GGTTCCGTATCATCATTCTTCTTAAGA 59.073 37.037 0.00 0.00 35.26 2.10
2393 2504 3.691575 TCAACAACACTGTCCCTTTCAA 58.308 40.909 0.00 0.00 33.45 2.69
2540 2651 0.908910 TGATAGCGCCAGGAGGAAAA 59.091 50.000 2.29 0.00 36.89 2.29
2560 2671 6.091305 GGAAAATAAATGCAAAGGTCTGCTTC 59.909 38.462 0.00 0.00 43.07 3.86
2585 2696 0.107214 TGCCACCCTAGCAATGTAGC 60.107 55.000 0.00 0.00 37.28 3.58
2795 2923 1.076549 TGGACCAGCCCATCAAACC 59.923 57.895 0.00 0.00 34.97 3.27
2805 2933 2.026262 GCCCATCAAACCTGGAGTCTTA 60.026 50.000 0.00 0.00 35.70 2.10
2822 2950 8.065627 TGGAGTCTTATCCCTTAATTAGAGTCA 58.934 37.037 0.00 0.00 36.86 3.41
2841 2972 8.485976 AGAGTCATAGTTGATTAAGCAAGTTC 57.514 34.615 18.19 9.83 33.56 3.01
2857 2988 4.388165 GCAAGTTCGTTAGGAAAGAGTACC 59.612 45.833 0.00 0.00 36.14 3.34
2899 3030 3.996363 TCATCATCAAACGTGGAGTCTTG 59.004 43.478 0.00 0.00 0.00 3.02
2944 3075 8.908903 TGATTAAGCAAGTTTGTTAGGAAAGAA 58.091 29.630 0.00 0.00 0.00 2.52
3018 3149 3.489398 CGGTCAAGTCCTGTCTGCTATAC 60.489 52.174 0.00 0.00 0.00 1.47
3129 3260 8.470002 AGTTCATTCTTCCACTTATATTTTGGC 58.530 33.333 0.00 0.00 0.00 4.52
3451 3585 9.077674 GTTGGAATCATACAGCTATATAGTTCG 57.922 37.037 11.38 3.18 0.00 3.95
3475 3609 7.119699 TCGATTTGAACAGCAGAAATGTCTTAT 59.880 33.333 0.00 0.00 28.78 1.73
3476 3610 8.390354 CGATTTGAACAGCAGAAATGTCTTATA 58.610 33.333 0.00 0.00 28.78 0.98
3477 3611 9.495754 GATTTGAACAGCAGAAATGTCTTATAC 57.504 33.333 0.00 0.00 28.78 1.47
3478 3612 8.621532 TTTGAACAGCAGAAATGTCTTATACT 57.378 30.769 0.00 0.00 28.78 2.12
3479 3613 7.834068 TGAACAGCAGAAATGTCTTATACTC 57.166 36.000 0.00 0.00 28.78 2.59
3480 3614 6.818644 TGAACAGCAGAAATGTCTTATACTCC 59.181 38.462 0.00 0.00 28.78 3.85
3481 3615 5.675538 ACAGCAGAAATGTCTTATACTCCC 58.324 41.667 0.00 0.00 28.78 4.30
3482 3616 5.426833 ACAGCAGAAATGTCTTATACTCCCT 59.573 40.000 0.00 0.00 28.78 4.20
3483 3617 5.988561 CAGCAGAAATGTCTTATACTCCCTC 59.011 44.000 0.00 0.00 28.78 4.30
3484 3618 5.071115 AGCAGAAATGTCTTATACTCCCTCC 59.929 44.000 0.00 0.00 28.78 4.30
3485 3619 5.533482 CAGAAATGTCTTATACTCCCTCCG 58.467 45.833 0.00 0.00 28.78 4.63
3486 3620 5.069251 CAGAAATGTCTTATACTCCCTCCGT 59.931 44.000 0.00 0.00 28.78 4.69
3487 3621 5.661759 AGAAATGTCTTATACTCCCTCCGTT 59.338 40.000 0.00 0.00 0.00 4.44
3488 3622 5.532664 AATGTCTTATACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
3489 3623 3.294214 TGTCTTATACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
3490 3624 2.292845 GTCTTATACTCCCTCCGTTCCG 59.707 54.545 0.00 0.00 0.00 4.30
3491 3625 2.173356 TCTTATACTCCCTCCGTTCCGA 59.827 50.000 0.00 0.00 0.00 4.55
3492 3626 2.734755 TATACTCCCTCCGTTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
3493 3627 1.856629 ATACTCCCTCCGTTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
3494 3628 1.856629 TACTCCCTCCGTTCCGAAAT 58.143 50.000 0.00 0.00 0.00 2.17
3495 3629 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3496 3630 1.755380 ACTCCCTCCGTTCCGAAATAG 59.245 52.381 0.00 0.00 0.00 1.73
3497 3631 2.029623 CTCCCTCCGTTCCGAAATAGA 58.970 52.381 0.00 0.00 0.00 1.98
3498 3632 2.628657 CTCCCTCCGTTCCGAAATAGAT 59.371 50.000 0.00 0.00 0.00 1.98
3499 3633 2.364324 TCCCTCCGTTCCGAAATAGATG 59.636 50.000 0.00 0.00 0.00 2.90
3500 3634 2.364324 CCCTCCGTTCCGAAATAGATGA 59.636 50.000 0.00 0.00 0.00 2.92
3501 3635 3.381949 CCTCCGTTCCGAAATAGATGAC 58.618 50.000 0.00 0.00 0.00 3.06
3502 3636 3.068307 CCTCCGTTCCGAAATAGATGACT 59.932 47.826 0.00 0.00 0.00 3.41
3503 3637 4.041740 TCCGTTCCGAAATAGATGACTG 57.958 45.455 0.00 0.00 0.00 3.51
3504 3638 3.697542 TCCGTTCCGAAATAGATGACTGA 59.302 43.478 0.00 0.00 0.00 3.41
3505 3639 4.158949 TCCGTTCCGAAATAGATGACTGAA 59.841 41.667 0.00 0.00 0.00 3.02
3506 3640 4.267928 CCGTTCCGAAATAGATGACTGAAC 59.732 45.833 0.00 0.00 0.00 3.18
3507 3641 5.103000 CGTTCCGAAATAGATGACTGAACT 58.897 41.667 0.00 0.00 31.17 3.01
3508 3642 5.577164 CGTTCCGAAATAGATGACTGAACTT 59.423 40.000 0.00 0.00 31.17 2.66
3509 3643 6.090898 CGTTCCGAAATAGATGACTGAACTTT 59.909 38.462 0.00 0.00 31.17 2.66
3510 3644 6.968131 TCCGAAATAGATGACTGAACTTTG 57.032 37.500 0.00 0.00 0.00 2.77
3511 3645 6.464222 TCCGAAATAGATGACTGAACTTTGT 58.536 36.000 0.00 0.00 0.00 2.83
3512 3646 7.608153 TCCGAAATAGATGACTGAACTTTGTA 58.392 34.615 0.00 0.00 0.00 2.41
3513 3647 7.544566 TCCGAAATAGATGACTGAACTTTGTAC 59.455 37.037 0.00 0.00 0.00 2.90
3514 3648 7.545965 CCGAAATAGATGACTGAACTTTGTACT 59.454 37.037 0.00 0.00 0.00 2.73
3515 3649 9.569167 CGAAATAGATGACTGAACTTTGTACTA 57.431 33.333 0.00 0.00 0.00 1.82
3523 3657 9.998106 ATGACTGAACTTTGTACTAATTGTAGT 57.002 29.630 0.00 0.00 43.27 2.73
3558 3692 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
3559 3693 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
3560 3694 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
3561 3695 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
3562 3696 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
3563 3697 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
3564 3698 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
3565 3699 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
3566 3700 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3567 3701 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3568 3702 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3569 3703 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3570 3704 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3571 3705 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3572 3706 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
3640 3774 4.924305 ATCACATGGGCATATCAACAAC 57.076 40.909 0.00 0.00 0.00 3.32
3945 4079 1.160329 ACAACAGCTTCGTGCAGGAC 61.160 55.000 8.96 0.00 45.94 3.85
3996 4130 1.290130 TCCTACCCTTGGGTAGAGGAC 59.710 57.143 35.24 0.00 43.04 3.85
4053 4187 4.175337 GCACTGCGGGATGGGCTA 62.175 66.667 0.00 0.00 0.00 3.93
4089 4223 2.066592 TCCCCTTTCAATGGGTACACA 58.933 47.619 0.00 0.00 43.09 3.72
4249 4383 1.400142 TGTTCAACTCGCAACAAGGTG 59.600 47.619 0.00 0.00 32.52 4.00
4350 4484 2.373169 ACATAGGCCATCATGTACCCTG 59.627 50.000 14.08 0.00 33.66 4.45
4452 4586 0.886490 CACCAGGCACTCCTCAACAC 60.886 60.000 0.00 0.00 41.93 3.32
4702 4836 3.474806 GGTGTGTTCATCGAGGCG 58.525 61.111 0.00 0.00 0.00 5.52
4714 4848 2.383527 CGAGGCGAGCAGTGGTTTC 61.384 63.158 0.00 0.00 0.00 2.78
4736 4870 2.103771 GGCCAGTCTGAAGATAGCATCA 59.896 50.000 0.00 0.00 0.00 3.07
4738 4872 4.194640 GCCAGTCTGAAGATAGCATCAAA 58.805 43.478 0.00 0.00 0.00 2.69
4791 4925 5.748670 TGGCACCAATCTTACTACTTACA 57.251 39.130 0.00 0.00 0.00 2.41
4796 4930 6.260936 GCACCAATCTTACTACTTACATGCAT 59.739 38.462 0.00 0.00 0.00 3.96
4797 4931 7.441157 GCACCAATCTTACTACTTACATGCATA 59.559 37.037 0.00 0.00 0.00 3.14
4798 4932 8.982685 CACCAATCTTACTACTTACATGCATAG 58.017 37.037 0.00 0.00 0.00 2.23
4982 5119 9.722056 CTTATGTCTTCAAATGCAAGTATAACC 57.278 33.333 0.00 0.00 0.00 2.85
5182 5320 3.050089 TCTACCCAAAGAGGTGTTCCAA 58.950 45.455 0.00 0.00 41.42 3.53
5269 5407 1.234615 ATGTCAAGAACAACCCGGCG 61.235 55.000 0.00 0.00 42.37 6.46
5584 5725 3.844090 GGAGTCTCAGGGCTCCGC 61.844 72.222 1.47 0.00 41.40 5.54
5675 5816 5.765182 GGCAGGTACTTAATGCAGAACATAT 59.235 40.000 12.53 0.00 41.78 1.78
5737 5878 9.113838 ACTGTAATGGCTTCTAATCATACTTTG 57.886 33.333 0.00 0.00 0.00 2.77
5809 5950 5.133941 CAGCTGGAGTGTAGTAGATTCCTA 58.866 45.833 5.57 0.00 0.00 2.94
5840 5981 4.711721 CCTTTTATGATGTGTGTGTGACG 58.288 43.478 0.00 0.00 0.00 4.35
6052 6193 7.698506 TCAGTATATGGTCCCTAATCTTACG 57.301 40.000 0.00 0.00 0.00 3.18
6109 6251 2.902705 TCCATAATAGACCGGTGCAC 57.097 50.000 14.63 8.80 0.00 4.57
6362 6786 3.554337 GGAAAGCTTGACGTGAGGAGTTA 60.554 47.826 0.00 0.00 0.00 2.24
6389 6813 8.275015 ACGGATTACATGTTGTGATCATTTTA 57.725 30.769 2.30 0.00 42.90 1.52
6390 6814 8.181573 ACGGATTACATGTTGTGATCATTTTAC 58.818 33.333 2.30 0.00 42.90 2.01
6391 6815 8.397906 CGGATTACATGTTGTGATCATTTTACT 58.602 33.333 2.30 0.00 42.90 2.24
6686 7140 7.308435 CCATAGTTCCATGTCAAGAAGAAAAC 58.692 38.462 0.00 0.00 0.00 2.43
6793 7248 7.415229 CCCAGGCGTAATTTATTACTTTCTTC 58.585 38.462 10.07 0.00 40.27 2.87
6906 7363 8.821894 GTGTATTGCCTTTGTTGTCAATTTTAA 58.178 29.630 0.00 0.00 33.32 1.52
6910 7367 5.119694 GCCTTTGTTGTCAATTTTAACCCA 58.880 37.500 0.00 0.00 33.32 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.628178 TCGACATACCTAGGCTTGGATG 59.372 50.000 21.96 19.68 0.00 3.51
36 37 2.958818 TCGACATACCTAGGCTTGGAT 58.041 47.619 21.96 7.89 0.00 3.41
46 48 4.742012 AGATAACCAGGATCGACATACCT 58.258 43.478 0.00 0.00 34.02 3.08
104 106 5.012561 AGAGAGAGACAAGGTGTTAAATGCT 59.987 40.000 0.00 0.00 0.00 3.79
238 241 8.344831 GCTTGTGACAGTATGATGCATTTTATA 58.655 33.333 0.00 0.00 39.69 0.98
239 242 7.148035 TGCTTGTGACAGTATGATGCATTTTAT 60.148 33.333 0.00 0.00 39.69 1.40
266 269 3.181493 TGTCCGGAATTAGTCGAAGCTAC 60.181 47.826 5.23 0.00 0.00 3.58
274 277 3.447944 ACTTCCTCTGTCCGGAATTAGTC 59.552 47.826 5.23 0.00 39.64 2.59
332 335 8.612619 TGAAAAACTAAGAGTTAAGAAGCACAG 58.387 33.333 0.00 0.00 37.47 3.66
350 353 2.683211 AGTGCCATCCCTGAAAAACT 57.317 45.000 0.00 0.00 0.00 2.66
428 437 5.308825 ACCATGGTTCCGATGAAGATAATC 58.691 41.667 13.00 0.00 0.00 1.75
429 438 5.072329 AGACCATGGTTCCGATGAAGATAAT 59.928 40.000 20.85 0.00 0.00 1.28
430 439 4.408921 AGACCATGGTTCCGATGAAGATAA 59.591 41.667 20.85 0.00 0.00 1.75
431 440 3.967326 AGACCATGGTTCCGATGAAGATA 59.033 43.478 20.85 0.00 0.00 1.98
500 514 2.048603 GGAAGGGTGTGCTGCCATC 61.049 63.158 0.00 0.00 0.00 3.51
549 565 1.562672 ATACCGGCTGCAGAAAGGGT 61.563 55.000 20.43 19.04 0.00 4.34
583 599 2.449464 TGCCAGCTGTAGAAAATGCAT 58.551 42.857 13.81 0.00 0.00 3.96
603 619 8.980596 TGAATGCCAGTTATTCCATAGAAAAAT 58.019 29.630 0.00 0.00 35.09 1.82
672 688 9.199982 CAAGAATATGTGTTCTGCATTCTTTTT 57.800 29.630 3.94 0.00 41.60 1.94
680 696 3.419943 TGGCAAGAATATGTGTTCTGCA 58.580 40.909 12.22 0.00 38.41 4.41
682 698 7.147312 TCTTTTTGGCAAGAATATGTGTTCTG 58.853 34.615 3.46 0.00 38.41 3.02
683 699 7.288810 TCTTTTTGGCAAGAATATGTGTTCT 57.711 32.000 3.46 0.00 40.05 3.01
684 700 7.945033 TTCTTTTTGGCAAGAATATGTGTTC 57.055 32.000 3.46 0.00 37.77 3.18
685 701 8.203485 TCTTTCTTTTTGGCAAGAATATGTGTT 58.797 29.630 3.46 0.00 41.42 3.32
686 702 7.725251 TCTTTCTTTTTGGCAAGAATATGTGT 58.275 30.769 3.46 0.00 41.42 3.72
687 703 8.592105 TTCTTTCTTTTTGGCAAGAATATGTG 57.408 30.769 3.46 0.00 41.42 3.21
688 704 9.612066 TTTTCTTTCTTTTTGGCAAGAATATGT 57.388 25.926 3.46 0.00 41.42 2.29
691 707 8.558700 GCATTTTCTTTCTTTTTGGCAAGAATA 58.441 29.630 3.46 0.00 41.42 1.75
692 708 7.283807 AGCATTTTCTTTCTTTTTGGCAAGAAT 59.716 29.630 3.46 0.00 41.42 2.40
693 709 6.598850 AGCATTTTCTTTCTTTTTGGCAAGAA 59.401 30.769 0.00 0.82 40.36 2.52
694 710 6.037391 CAGCATTTTCTTTCTTTTTGGCAAGA 59.963 34.615 0.00 0.00 0.00 3.02
695 711 6.196571 CAGCATTTTCTTTCTTTTTGGCAAG 58.803 36.000 0.00 0.00 0.00 4.01
753 781 9.057089 TCTTTCCAGTTTTCTTATGTTTCTCTC 57.943 33.333 0.00 0.00 0.00 3.20
954 995 0.175760 AATGGAGTATCGTGTGCGCT 59.824 50.000 9.73 0.00 38.14 5.92
1078 1140 2.358737 CAGGAAGACGGTGGTGGC 60.359 66.667 0.00 0.00 0.00 5.01
1080 1142 2.358737 GCCAGGAAGACGGTGGTG 60.359 66.667 0.00 0.00 33.51 4.17
1081 1143 4.003788 CGCCAGGAAGACGGTGGT 62.004 66.667 0.00 0.00 33.51 4.16
1083 1145 2.125912 CTCGCCAGGAAGACGGTG 60.126 66.667 0.00 0.00 0.00 4.94
1088 1150 2.364317 CCCCTCTCGCCAGGAAGA 60.364 66.667 0.00 0.00 35.20 2.87
1090 1152 2.364317 CTCCCCTCTCGCCAGGAA 60.364 66.667 0.00 0.00 35.20 3.36
1091 1153 4.465446 CCTCCCCTCTCGCCAGGA 62.465 72.222 0.00 0.00 35.20 3.86
1093 1155 2.364317 TTCCTCCCCTCTCGCCAG 60.364 66.667 0.00 0.00 0.00 4.85
1094 1156 2.364317 CTTCCTCCCCTCTCGCCA 60.364 66.667 0.00 0.00 0.00 5.69
1095 1157 3.157949 CCTTCCTCCCCTCTCGCC 61.158 72.222 0.00 0.00 0.00 5.54
1096 1158 3.157949 CCCTTCCTCCCCTCTCGC 61.158 72.222 0.00 0.00 0.00 5.03
1098 1160 2.770475 GCCCCTTCCTCCCCTCTC 60.770 72.222 0.00 0.00 0.00 3.20
1099 1161 3.626596 TGCCCCTTCCTCCCCTCT 61.627 66.667 0.00 0.00 0.00 3.69
1100 1162 3.093172 CTGCCCCTTCCTCCCCTC 61.093 72.222 0.00 0.00 0.00 4.30
1101 1163 4.767892 CCTGCCCCTTCCTCCCCT 62.768 72.222 0.00 0.00 0.00 4.79
1103 1165 1.212250 TAAACCTGCCCCTTCCTCCC 61.212 60.000 0.00 0.00 0.00 4.30
1104 1166 0.256177 CTAAACCTGCCCCTTCCTCC 59.744 60.000 0.00 0.00 0.00 4.30
1105 1167 0.394488 GCTAAACCTGCCCCTTCCTC 60.394 60.000 0.00 0.00 0.00 3.71
1106 1168 1.691823 GCTAAACCTGCCCCTTCCT 59.308 57.895 0.00 0.00 0.00 3.36
1107 1169 1.379977 GGCTAAACCTGCCCCTTCC 60.380 63.158 0.00 0.00 44.32 3.46
1108 1170 4.338815 GGCTAAACCTGCCCCTTC 57.661 61.111 0.00 0.00 44.32 3.46
1141 1203 4.344237 CTGGAAGCCATGGAACCC 57.656 61.111 18.40 12.68 30.82 4.11
1160 1222 4.883354 CAAGGATGCCGCCCCCTC 62.883 72.222 1.62 0.00 0.00 4.30
1232 1300 3.005539 GAGGCAGAGGGTGAGGCA 61.006 66.667 0.00 0.00 0.00 4.75
1241 1309 1.153208 GGACAGCATGGAGGCAGAG 60.153 63.158 0.00 0.00 43.62 3.35
1261 1333 3.549299 AGCAGAAATGCTCAAGAAACG 57.451 42.857 0.00 0.00 42.12 3.60
1409 1484 3.694566 TCTGAATGAGCAAGCGACTACTA 59.305 43.478 0.00 0.00 0.00 1.82
1441 1520 5.167303 ACCAAAATGTCCTAGGAGAGAAC 57.833 43.478 13.15 0.42 0.00 3.01
1507 1586 4.762765 AGTGCACGGTCCTCTATCTATTAG 59.237 45.833 12.01 0.00 0.00 1.73
1535 1615 9.965902 AGGGAGTAGCAAAATATATAAAGATGG 57.034 33.333 0.00 0.00 0.00 3.51
1556 1636 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
1557 1637 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
1558 1638 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
1559 1639 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
1560 1640 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
1561 1641 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
1575 1655 9.801873 ACTAGTGTAGTGTTAAAAACGTTCTTA 57.198 29.630 0.00 0.00 37.69 2.10
1576 1656 8.707938 ACTAGTGTAGTGTTAAAAACGTTCTT 57.292 30.769 0.00 0.00 37.69 2.52
1591 1671 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
1592 1672 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
1593 1673 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
1600 1680 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
1601 1681 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
1602 1682 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
1603 1683 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
1604 1684 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
1605 1685 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
1606 1686 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
1607 1687 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
1608 1688 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
1609 1689 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
1610 1690 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
1611 1691 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
1612 1692 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
1613 1693 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1614 1694 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1615 1695 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1616 1696 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1617 1697 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1618 1698 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
1619 1699 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
1620 1700 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
1621 1701 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
1622 1702 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
1623 1703 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
1624 1704 1.565067 TTTTCTACTCCCTCCGTCCC 58.435 55.000 0.00 0.00 0.00 4.46
1625 1705 4.213513 TCTATTTTCTACTCCCTCCGTCC 58.786 47.826 0.00 0.00 0.00 4.79
1626 1706 4.888823 ACTCTATTTTCTACTCCCTCCGTC 59.111 45.833 0.00 0.00 0.00 4.79
1627 1707 4.869451 ACTCTATTTTCTACTCCCTCCGT 58.131 43.478 0.00 0.00 0.00 4.69
1628 1708 5.826737 TGTACTCTATTTTCTACTCCCTCCG 59.173 44.000 0.00 0.00 0.00 4.63
1629 1709 6.606395 TGTGTACTCTATTTTCTACTCCCTCC 59.394 42.308 0.00 0.00 0.00 4.30
1630 1710 7.642082 TGTGTACTCTATTTTCTACTCCCTC 57.358 40.000 0.00 0.00 0.00 4.30
1631 1711 8.431910 TTTGTGTACTCTATTTTCTACTCCCT 57.568 34.615 0.00 0.00 0.00 4.20
1632 1712 7.764901 CCTTTGTGTACTCTATTTTCTACTCCC 59.235 40.741 0.00 0.00 0.00 4.30
1633 1713 8.529476 TCCTTTGTGTACTCTATTTTCTACTCC 58.471 37.037 0.00 0.00 0.00 3.85
1634 1714 9.924650 TTCCTTTGTGTACTCTATTTTCTACTC 57.075 33.333 0.00 0.00 0.00 2.59
1693 1775 1.020437 GCTGCTCCAGATAAACAGGC 58.980 55.000 0.00 0.00 32.44 4.85
1709 1791 3.244353 CCTGGTCTCCTGGTATTATGCTG 60.244 52.174 0.00 0.00 37.76 4.41
1750 1840 8.982091 ATCTAGTAGTTGAGCTAATGTACTCA 57.018 34.615 0.00 0.00 41.06 3.41
1768 1866 5.885912 GGCAAAAGAATGTCCCAATCTAGTA 59.114 40.000 0.00 0.00 0.00 1.82
1800 1899 6.238456 GCAAATTCTAGCTTGGCTTTGTTTTT 60.238 34.615 17.39 0.00 40.44 1.94
1801 1900 5.237127 GCAAATTCTAGCTTGGCTTTGTTTT 59.763 36.000 17.39 0.00 40.44 2.43
1802 1901 4.751600 GCAAATTCTAGCTTGGCTTTGTTT 59.248 37.500 17.39 0.00 40.44 2.83
1803 1902 4.202243 TGCAAATTCTAGCTTGGCTTTGTT 60.202 37.500 17.39 0.00 40.44 2.83
1804 1903 3.321682 TGCAAATTCTAGCTTGGCTTTGT 59.678 39.130 17.39 0.00 40.44 2.83
1805 1904 3.916761 TGCAAATTCTAGCTTGGCTTTG 58.083 40.909 14.28 14.28 40.44 2.77
1806 1905 4.563061 CTTGCAAATTCTAGCTTGGCTTT 58.437 39.130 0.00 0.00 40.44 3.51
1807 1906 3.615834 GCTTGCAAATTCTAGCTTGGCTT 60.616 43.478 0.00 0.00 40.44 4.35
1808 1907 2.094338 GCTTGCAAATTCTAGCTTGGCT 60.094 45.455 0.00 0.00 43.41 4.75
1809 1908 2.094338 AGCTTGCAAATTCTAGCTTGGC 60.094 45.455 0.00 0.00 41.14 4.52
1810 1909 3.863142 AGCTTGCAAATTCTAGCTTGG 57.137 42.857 0.00 0.00 41.14 3.61
1821 1920 1.323412 TCCCGCTTAAAGCTTGCAAA 58.677 45.000 0.00 0.00 39.60 3.68
1826 1925 3.945921 GGAGTATTTCCCGCTTAAAGCTT 59.054 43.478 0.00 0.00 40.37 3.74
1828 1927 3.965292 GGAGTATTTCCCGCTTAAAGC 57.035 47.619 0.00 0.00 40.37 3.51
1842 1941 8.834004 TCCATAGTACTGTTTGTTAGGAGTAT 57.166 34.615 5.39 0.00 0.00 2.12
1843 1942 8.526147 GTTCCATAGTACTGTTTGTTAGGAGTA 58.474 37.037 5.39 0.00 0.00 2.59
1846 1945 7.015877 AGTGTTCCATAGTACTGTTTGTTAGGA 59.984 37.037 5.39 0.00 0.00 2.94
1847 1946 7.159372 AGTGTTCCATAGTACTGTTTGTTAGG 58.841 38.462 5.39 0.00 0.00 2.69
1848 1947 8.495949 CAAGTGTTCCATAGTACTGTTTGTTAG 58.504 37.037 5.39 0.00 0.00 2.34
1859 1970 4.528987 TGCAGGTACAAGTGTTCCATAGTA 59.471 41.667 9.45 0.00 37.87 1.82
1860 1971 3.326588 TGCAGGTACAAGTGTTCCATAGT 59.673 43.478 9.45 0.00 37.87 2.12
1861 1972 3.935203 CTGCAGGTACAAGTGTTCCATAG 59.065 47.826 5.57 1.74 37.87 2.23
1913 2024 0.121197 AGGGGTGGGAGATTCCTCAA 59.879 55.000 0.00 0.00 41.20 3.02
2149 2260 2.266055 GTGGAGACGAAGGCCTGG 59.734 66.667 5.69 3.78 0.00 4.45
2203 2314 2.127271 CATTGATGCAGGTACCACCA 57.873 50.000 15.94 10.84 41.95 4.17
2294 2405 8.503428 AGGGAAGAATGATGATATACAACTCT 57.497 34.615 0.00 0.00 0.00 3.24
2295 2406 8.592809 AGAGGGAAGAATGATGATATACAACTC 58.407 37.037 0.00 0.00 0.00 3.01
2296 2407 8.373981 CAGAGGGAAGAATGATGATATACAACT 58.626 37.037 0.00 0.00 0.00 3.16
2393 2504 6.128138 AGCTAACTTGATTCTGGGTTAACT 57.872 37.500 5.42 0.00 0.00 2.24
2478 2589 8.603898 TTTACCCTAGATCTGACATTTACTGA 57.396 34.615 5.18 0.00 0.00 3.41
2540 2651 4.768968 ACTGAAGCAGACCTTTGCATTTAT 59.231 37.500 0.82 0.00 46.47 1.40
2560 2671 2.437359 GCTAGGGTGGCAGCACTG 60.437 66.667 19.48 8.22 37.73 3.66
2795 2923 8.485578 ACTCTAATTAAGGGATAAGACTCCAG 57.514 38.462 0.00 0.00 37.01 3.86
2822 2950 8.038944 TCCTAACGAACTTGCTTAATCAACTAT 58.961 33.333 0.00 0.00 0.00 2.12
2841 2972 3.190118 ACTGACGGTACTCTTTCCTAACG 59.810 47.826 0.00 0.00 0.00 3.18
3106 3237 9.866655 ATAGCCAAAATATAAGTGGAAGAATGA 57.133 29.630 3.93 0.00 34.05 2.57
3129 3260 7.962918 AGTTTTGCAACTACGCTGAAATAATAG 59.037 33.333 0.00 0.00 41.81 1.73
3141 3272 1.333619 ACTGCCAGTTTTGCAACTACG 59.666 47.619 0.00 0.00 41.69 3.51
3252 3385 0.109723 ACCAAAGCCGAGGCACTTAA 59.890 50.000 17.18 0.00 41.55 1.85
3339 3473 6.915300 CCAACATGAAACATGAGTCGTTTTTA 59.085 34.615 16.86 0.00 36.72 1.52
3345 3479 4.747540 TTCCAACATGAAACATGAGTCG 57.252 40.909 16.86 3.99 0.00 4.18
3451 3585 9.495754 GTATAAGACATTTCTGCTGTTCAAATC 57.504 33.333 0.00 0.00 29.98 2.17
3485 3619 6.969828 AAGTTCAGTCATCTATTTCGGAAC 57.030 37.500 0.00 0.00 36.07 3.62
3486 3620 6.934645 ACAAAGTTCAGTCATCTATTTCGGAA 59.065 34.615 0.00 0.00 0.00 4.30
3487 3621 6.464222 ACAAAGTTCAGTCATCTATTTCGGA 58.536 36.000 0.00 0.00 0.00 4.55
3488 3622 6.727824 ACAAAGTTCAGTCATCTATTTCGG 57.272 37.500 0.00 0.00 0.00 4.30
3489 3623 8.467402 AGTACAAAGTTCAGTCATCTATTTCG 57.533 34.615 0.00 0.00 0.00 3.46
3497 3631 9.998106 ACTACAATTAGTACAAAGTTCAGTCAT 57.002 29.630 0.00 0.00 36.73 3.06
3532 3666 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
3533 3667 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
3534 3668 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3535 3669 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
3536 3670 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
3537 3671 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3538 3672 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3539 3673 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
3540 3674 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3541 3675 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3542 3676 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3543 3677 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3544 3678 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3545 3679 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3546 3680 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3547 3681 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3548 3682 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3549 3683 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3550 3684 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3551 3685 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3552 3686 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
3553 3687 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
3554 3688 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3555 3689 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
3556 3690 3.393426 AATACTACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
3557 3691 4.280425 CCTAAATACTACTCCCTCCGTTCC 59.720 50.000 0.00 0.00 0.00 3.62
3558 3692 5.136105 TCCTAAATACTACTCCCTCCGTTC 58.864 45.833 0.00 0.00 0.00 3.95
3559 3693 5.134725 TCCTAAATACTACTCCCTCCGTT 57.865 43.478 0.00 0.00 0.00 4.44
3560 3694 4.803329 TCCTAAATACTACTCCCTCCGT 57.197 45.455 0.00 0.00 0.00 4.69
3561 3695 4.891756 TGTTCCTAAATACTACTCCCTCCG 59.108 45.833 0.00 0.00 0.00 4.63
3562 3696 6.134754 TCTGTTCCTAAATACTACTCCCTCC 58.865 44.000 0.00 0.00 0.00 4.30
3563 3697 6.265876 CCTCTGTTCCTAAATACTACTCCCTC 59.734 46.154 0.00 0.00 0.00 4.30
3564 3698 6.137559 CCTCTGTTCCTAAATACTACTCCCT 58.862 44.000 0.00 0.00 0.00 4.20
3565 3699 5.304871 CCCTCTGTTCCTAAATACTACTCCC 59.695 48.000 0.00 0.00 0.00 4.30
3566 3700 5.898397 ACCCTCTGTTCCTAAATACTACTCC 59.102 44.000 0.00 0.00 0.00 3.85
3567 3701 6.380560 ACACCCTCTGTTCCTAAATACTACTC 59.619 42.308 0.00 0.00 0.00 2.59
3568 3702 6.262207 ACACCCTCTGTTCCTAAATACTACT 58.738 40.000 0.00 0.00 0.00 2.57
3569 3703 6.541934 ACACCCTCTGTTCCTAAATACTAC 57.458 41.667 0.00 0.00 0.00 2.73
3570 3704 8.849543 AATACACCCTCTGTTCCTAAATACTA 57.150 34.615 0.00 0.00 33.91 1.82
3571 3705 7.750947 AATACACCCTCTGTTCCTAAATACT 57.249 36.000 0.00 0.00 33.91 2.12
3572 3706 8.702819 AGTAATACACCCTCTGTTCCTAAATAC 58.297 37.037 0.00 0.00 33.91 1.89
3640 3774 3.624777 AGTTACCATGGGCATCAAAGAG 58.375 45.455 18.09 0.00 0.00 2.85
3945 4079 0.955919 GGTCTTCTTCCCAGCCAACG 60.956 60.000 0.00 0.00 0.00 4.10
3996 4130 0.400213 TAGGCCACTGGACAACCTTG 59.600 55.000 5.01 0.00 37.04 3.61
4053 4187 1.282157 GGGGATACACCTGCTTCAACT 59.718 52.381 0.00 0.00 38.98 3.16
4089 4223 3.527253 TGGTCCCAGAAACATGGTCATAT 59.473 43.478 0.00 0.00 38.81 1.78
4249 4383 2.859526 GCTTTTAGGAGCTTGGATGC 57.140 50.000 0.00 0.00 39.57 3.91
4350 4484 7.761409 TGCATAGGAGTTCATGTTATTGAAAC 58.239 34.615 0.00 0.00 37.36 2.78
4452 4586 7.601886 AGATGATAATTTCGCTATCTCTGTTGG 59.398 37.037 0.00 0.00 0.00 3.77
4588 4722 0.890683 GGTTGTCAGCCATCCCTTTG 59.109 55.000 0.00 0.00 0.00 2.77
4645 4779 1.067565 GTCTCAATCAGTGACTGCCGA 60.068 52.381 7.93 3.16 37.67 5.54
4669 4803 1.349688 ACACCGGCTTCAGTTATTCCA 59.650 47.619 0.00 0.00 0.00 3.53
4702 4836 2.281484 TGGCCGAAACCACTGCTC 60.281 61.111 0.00 0.00 33.75 4.26
4714 4848 0.461548 TGCTATCTTCAGACTGGCCG 59.538 55.000 1.81 0.00 0.00 6.13
4736 4870 1.477700 CATGATTCCGTGGTGGCATTT 59.522 47.619 0.00 0.00 37.80 2.32
4738 4872 0.034186 ACATGATTCCGTGGTGGCAT 60.034 50.000 0.00 0.00 37.80 4.40
4966 5103 7.482474 TGATGACATGGTTATACTTGCATTTG 58.518 34.615 0.00 0.00 0.00 2.32
5182 5320 5.843019 TCTTCTCAAGGATAAAACCACCT 57.157 39.130 0.00 0.00 35.36 4.00
5269 5407 6.569179 TGGCTGAAATAGTTGAAAGTAACC 57.431 37.500 0.00 0.00 0.00 2.85
5356 5494 3.129462 CAGGAGTCAGATGAGCGAAACTA 59.871 47.826 0.00 0.00 0.00 2.24
5675 5816 7.870445 AGCGTTTATTTTGCCAAATAAGAAAGA 59.130 29.630 13.56 0.00 42.95 2.52
5698 5839 6.092748 AGCCATTACAGTTTAAAATTGAGCG 58.907 36.000 7.70 0.00 0.00 5.03
5737 5878 2.037251 TCACTCCAAAGTACCTGAGCAC 59.963 50.000 0.00 0.00 33.25 4.40
5809 5950 4.588528 ACACATCATAAAAGGCAGGTGTTT 59.411 37.500 0.00 0.00 34.89 2.83
6052 6193 9.906660 TTGTAGATGTTTTATCAAACCATTCAC 57.093 29.630 0.20 0.00 41.60 3.18
6095 6236 0.179119 GCTACGTGCACCGGTCTATT 60.179 55.000 12.15 0.00 42.24 1.73
6097 6238 1.651240 GAGCTACGTGCACCGGTCTA 61.651 60.000 12.15 0.00 45.94 2.59
6098 6239 2.989824 AGCTACGTGCACCGGTCT 60.990 61.111 12.15 0.70 45.94 3.85
6099 6240 2.506438 GAGCTACGTGCACCGGTC 60.506 66.667 12.15 11.15 45.94 4.79
6100 6241 4.065281 GGAGCTACGTGCACCGGT 62.065 66.667 12.15 0.00 42.21 5.28
6133 6275 4.733725 TCCTTCCCCGGACCCTGG 62.734 72.222 0.73 0.00 0.00 4.45
6216 6358 6.642131 CACATGGTTTGTTTCATACTTTCTGG 59.358 38.462 0.00 0.00 36.00 3.86
6362 6786 6.757897 ATGATCACAACATGTAATCCGTTT 57.242 33.333 0.00 0.00 0.00 3.60
6615 7065 2.020131 GCATGTGCCTCATCTTCCG 58.980 57.895 0.00 0.00 34.09 4.30
6686 7140 5.942872 AGTCTTGGAAACTTTATCGCAATG 58.057 37.500 0.00 0.00 0.00 2.82
6768 7223 6.937436 AGAAAGTAATAAATTACGCCTGGG 57.063 37.500 7.11 0.00 45.48 4.45
6769 7224 7.010738 TCGAAGAAAGTAATAAATTACGCCTGG 59.989 37.037 7.11 0.00 45.48 4.45
6793 7248 8.353684 AGTATATCACCTCTCAAATACTTGTCG 58.646 37.037 0.00 0.00 33.94 4.35
6823 7278 5.163012 ACACCTTATATCTAGGAACGGAGGA 60.163 44.000 10.07 0.00 36.58 3.71
6880 7337 6.843069 AAATTGACAACAAAGGCAATACAC 57.157 33.333 0.00 0.00 39.54 2.90
6906 7363 2.607750 AGCTGATCGGTGGTGGGT 60.608 61.111 2.89 0.00 0.00 4.51
6910 7367 2.284625 TGGGAGCTGATCGGTGGT 60.285 61.111 2.89 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.