Multiple sequence alignment - TraesCS5D01G197300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G197300 | chr5D | 100.000 | 3650 | 0 | 0 | 1 | 3650 | 300161806 | 300158157 | 0.000000e+00 | 6741.0 |
1 | TraesCS5D01G197300 | chr5D | 86.467 | 2165 | 150 | 60 | 892 | 2957 | 300323369 | 300321249 | 0.000000e+00 | 2242.0 |
2 | TraesCS5D01G197300 | chr5D | 86.659 | 1754 | 108 | 46 | 834 | 2506 | 300955471 | 300957179 | 0.000000e+00 | 1827.0 |
3 | TraesCS5D01G197300 | chr5D | 86.355 | 1671 | 123 | 50 | 892 | 2506 | 300147470 | 300145849 | 0.000000e+00 | 1725.0 |
4 | TraesCS5D01G197300 | chr5D | 86.352 | 1590 | 131 | 32 | 970 | 2506 | 299068554 | 299070110 | 0.000000e+00 | 1655.0 |
5 | TraesCS5D01G197300 | chr5D | 88.127 | 1036 | 73 | 20 | 888 | 1906 | 299388736 | 299389738 | 0.000000e+00 | 1186.0 |
6 | TraesCS5D01G197300 | chr5D | 86.667 | 765 | 49 | 28 | 1908 | 2637 | 299389767 | 299390513 | 0.000000e+00 | 798.0 |
7 | TraesCS5D01G197300 | chr5D | 88.806 | 268 | 22 | 4 | 2454 | 2715 | 299073121 | 299073386 | 4.550000e-84 | 322.0 |
8 | TraesCS5D01G197300 | chr5D | 90.336 | 238 | 17 | 2 | 2720 | 2957 | 299073590 | 299073821 | 1.270000e-79 | 307.0 |
9 | TraesCS5D01G197300 | chr5D | 78.892 | 379 | 33 | 11 | 384 | 715 | 300319043 | 300318665 | 2.860000e-51 | 213.0 |
10 | TraesCS5D01G197300 | chr5D | 100.000 | 37 | 0 | 0 | 2959 | 2995 | 550294910 | 550294946 | 6.540000e-08 | 69.4 |
11 | TraesCS5D01G197300 | chr5D | 100.000 | 35 | 0 | 0 | 2960 | 2994 | 51285716 | 51285682 | 8.460000e-07 | 65.8 |
12 | TraesCS5D01G197300 | chr5A | 86.340 | 1940 | 135 | 57 | 834 | 2715 | 398051336 | 398049469 | 0.000000e+00 | 1995.0 |
13 | TraesCS5D01G197300 | chr5A | 87.455 | 1674 | 108 | 44 | 886 | 2506 | 397787050 | 397785426 | 0.000000e+00 | 1834.0 |
14 | TraesCS5D01G197300 | chr5A | 86.472 | 1678 | 116 | 39 | 894 | 2506 | 396415630 | 396417261 | 0.000000e+00 | 1738.0 |
15 | TraesCS5D01G197300 | chr5A | 82.812 | 448 | 38 | 23 | 384 | 795 | 397787575 | 397787131 | 7.450000e-97 | 364.0 |
16 | TraesCS5D01G197300 | chr5A | 77.362 | 508 | 47 | 35 | 327 | 793 | 396494192 | 396494672 | 4.710000e-59 | 239.0 |
17 | TraesCS5D01G197300 | chr5A | 81.579 | 228 | 28 | 4 | 2405 | 2620 | 396419445 | 396419670 | 3.750000e-40 | 176.0 |
18 | TraesCS5D01G197300 | chr5A | 89.844 | 128 | 13 | 0 | 486 | 613 | 396472881 | 396473008 | 8.110000e-37 | 165.0 |
19 | TraesCS5D01G197300 | chr5A | 88.189 | 127 | 15 | 0 | 487 | 613 | 396432531 | 396432657 | 6.310000e-33 | 152.0 |
20 | TraesCS5D01G197300 | chr5A | 83.146 | 89 | 7 | 4 | 622 | 707 | 396473037 | 396473120 | 1.410000e-09 | 75.0 |
21 | TraesCS5D01G197300 | chr5A | 88.235 | 51 | 3 | 3 | 2977 | 3026 | 139891303 | 139891255 | 1.420000e-04 | 58.4 |
22 | TraesCS5D01G197300 | chr5B | 87.383 | 1712 | 96 | 51 | 970 | 2624 | 340609804 | 340611452 | 0.000000e+00 | 1855.0 |
23 | TraesCS5D01G197300 | chr5B | 87.582 | 1667 | 105 | 36 | 914 | 2506 | 344241027 | 344239389 | 0.000000e+00 | 1838.0 |
24 | TraesCS5D01G197300 | chr5B | 87.281 | 1659 | 106 | 40 | 1146 | 2751 | 340567770 | 340569376 | 0.000000e+00 | 1797.0 |
25 | TraesCS5D01G197300 | chr5B | 87.025 | 1657 | 112 | 33 | 908 | 2506 | 343952765 | 343951154 | 0.000000e+00 | 1773.0 |
26 | TraesCS5D01G197300 | chr5B | 86.567 | 1675 | 124 | 41 | 888 | 2506 | 340134526 | 340136155 | 0.000000e+00 | 1753.0 |
27 | TraesCS5D01G197300 | chr5B | 86.567 | 1675 | 124 | 40 | 888 | 2506 | 340324599 | 340326228 | 0.000000e+00 | 1753.0 |
28 | TraesCS5D01G197300 | chr5B | 89.339 | 1407 | 89 | 21 | 1146 | 2506 | 339977915 | 339979306 | 0.000000e+00 | 1711.0 |
29 | TraesCS5D01G197300 | chr5B | 87.544 | 281 | 16 | 8 | 15 | 292 | 343959180 | 343958916 | 1.270000e-79 | 307.0 |
30 | TraesCS5D01G197300 | chr5B | 79.310 | 348 | 34 | 17 | 479 | 788 | 340609138 | 340609485 | 3.690000e-50 | 209.0 |
31 | TraesCS5D01G197300 | chr5B | 92.562 | 121 | 9 | 0 | 497 | 617 | 340613479 | 340613599 | 1.350000e-39 | 174.0 |
32 | TraesCS5D01G197300 | chr5B | 90.667 | 75 | 6 | 1 | 417 | 490 | 340609052 | 340609126 | 8.340000e-17 | 99.0 |
33 | TraesCS5D01G197300 | chr5B | 97.297 | 37 | 1 | 0 | 383 | 419 | 340573809 | 340573845 | 3.040000e-06 | 63.9 |
34 | TraesCS5D01G197300 | chr3A | 83.787 | 1838 | 157 | 77 | 834 | 2618 | 456904923 | 456906672 | 0.000000e+00 | 1613.0 |
35 | TraesCS5D01G197300 | chr2D | 96.034 | 580 | 18 | 1 | 3071 | 3650 | 209037119 | 209037693 | 0.000000e+00 | 939.0 |
36 | TraesCS5D01G197300 | chr2D | 95.848 | 578 | 18 | 2 | 3074 | 3650 | 60004107 | 60004679 | 0.000000e+00 | 929.0 |
37 | TraesCS5D01G197300 | chr2D | 94.915 | 590 | 25 | 1 | 3061 | 3650 | 147241443 | 147242027 | 0.000000e+00 | 918.0 |
38 | TraesCS5D01G197300 | chr2D | 100.000 | 38 | 0 | 0 | 2958 | 2995 | 417517896 | 417517933 | 1.820000e-08 | 71.3 |
39 | TraesCS5D01G197300 | chr1D | 96.181 | 576 | 17 | 1 | 3075 | 3650 | 212050019 | 212050589 | 0.000000e+00 | 937.0 |
40 | TraesCS5D01G197300 | chr1D | 96.014 | 577 | 18 | 1 | 3074 | 3650 | 212056930 | 212057501 | 0.000000e+00 | 933.0 |
41 | TraesCS5D01G197300 | chr1D | 95.238 | 42 | 0 | 2 | 2953 | 2994 | 31365769 | 31365808 | 8.460000e-07 | 65.8 |
42 | TraesCS5D01G197300 | chr1D | 92.308 | 39 | 2 | 1 | 178 | 216 | 484101531 | 484101568 | 2.000000e-03 | 54.7 |
43 | TraesCS5D01G197300 | chr3D | 96.014 | 577 | 18 | 1 | 3074 | 3650 | 11555244 | 11554673 | 0.000000e+00 | 933.0 |
44 | TraesCS5D01G197300 | chr7D | 96.007 | 576 | 18 | 1 | 3075 | 3650 | 412340895 | 412341465 | 0.000000e+00 | 931.0 |
45 | TraesCS5D01G197300 | chr7D | 100.000 | 37 | 0 | 0 | 2958 | 2994 | 500150588 | 500150624 | 6.540000e-08 | 69.4 |
46 | TraesCS5D01G197300 | chr6D | 95.841 | 577 | 19 | 1 | 3074 | 3650 | 419729421 | 419729992 | 0.000000e+00 | 928.0 |
47 | TraesCS5D01G197300 | chr4D | 95.841 | 577 | 19 | 1 | 3074 | 3650 | 434283327 | 434282756 | 0.000000e+00 | 928.0 |
48 | TraesCS5D01G197300 | chrUn | 100.000 | 36 | 0 | 0 | 2959 | 2994 | 41158730 | 41158695 | 2.350000e-07 | 67.6 |
49 | TraesCS5D01G197300 | chr2A | 100.000 | 36 | 0 | 0 | 2959 | 2994 | 103819191 | 103819226 | 2.350000e-07 | 67.6 |
50 | TraesCS5D01G197300 | chr2B | 97.297 | 37 | 1 | 0 | 2961 | 2997 | 667227102 | 667227066 | 3.040000e-06 | 63.9 |
51 | TraesCS5D01G197300 | chr4A | 93.182 | 44 | 0 | 3 | 175 | 216 | 678053303 | 678053261 | 1.090000e-05 | 62.1 |
52 | TraesCS5D01G197300 | chr7A | 100.000 | 29 | 0 | 0 | 180 | 208 | 515169569 | 515169541 | 2.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G197300 | chr5D | 300158157 | 300161806 | 3649 | True | 6741.000000 | 6741 | 100.0000 | 1 | 3650 | 1 | chr5D.!!$R3 | 3649 |
1 | TraesCS5D01G197300 | chr5D | 300955471 | 300957179 | 1708 | False | 1827.000000 | 1827 | 86.6590 | 834 | 2506 | 1 | chr5D.!!$F1 | 1672 |
2 | TraesCS5D01G197300 | chr5D | 300145849 | 300147470 | 1621 | True | 1725.000000 | 1725 | 86.3550 | 892 | 2506 | 1 | chr5D.!!$R2 | 1614 |
3 | TraesCS5D01G197300 | chr5D | 300318665 | 300323369 | 4704 | True | 1227.500000 | 2242 | 82.6795 | 384 | 2957 | 2 | chr5D.!!$R4 | 2573 |
4 | TraesCS5D01G197300 | chr5D | 299388736 | 299390513 | 1777 | False | 992.000000 | 1186 | 87.3970 | 888 | 2637 | 2 | chr5D.!!$F4 | 1749 |
5 | TraesCS5D01G197300 | chr5D | 299068554 | 299073821 | 5267 | False | 761.333333 | 1655 | 88.4980 | 970 | 2957 | 3 | chr5D.!!$F3 | 1987 |
6 | TraesCS5D01G197300 | chr5A | 398049469 | 398051336 | 1867 | True | 1995.000000 | 1995 | 86.3400 | 834 | 2715 | 1 | chr5A.!!$R2 | 1881 |
7 | TraesCS5D01G197300 | chr5A | 397785426 | 397787575 | 2149 | True | 1099.000000 | 1834 | 85.1335 | 384 | 2506 | 2 | chr5A.!!$R3 | 2122 |
8 | TraesCS5D01G197300 | chr5A | 396415630 | 396419670 | 4040 | False | 957.000000 | 1738 | 84.0255 | 894 | 2620 | 2 | chr5A.!!$F3 | 1726 |
9 | TraesCS5D01G197300 | chr5B | 344239389 | 344241027 | 1638 | True | 1838.000000 | 1838 | 87.5820 | 914 | 2506 | 1 | chr5B.!!$R3 | 1592 |
10 | TraesCS5D01G197300 | chr5B | 340567770 | 340569376 | 1606 | False | 1797.000000 | 1797 | 87.2810 | 1146 | 2751 | 1 | chr5B.!!$F4 | 1605 |
11 | TraesCS5D01G197300 | chr5B | 343951154 | 343952765 | 1611 | True | 1773.000000 | 1773 | 87.0250 | 908 | 2506 | 1 | chr5B.!!$R1 | 1598 |
12 | TraesCS5D01G197300 | chr5B | 340134526 | 340136155 | 1629 | False | 1753.000000 | 1753 | 86.5670 | 888 | 2506 | 1 | chr5B.!!$F2 | 1618 |
13 | TraesCS5D01G197300 | chr5B | 340324599 | 340326228 | 1629 | False | 1753.000000 | 1753 | 86.5670 | 888 | 2506 | 1 | chr5B.!!$F3 | 1618 |
14 | TraesCS5D01G197300 | chr5B | 339977915 | 339979306 | 1391 | False | 1711.000000 | 1711 | 89.3390 | 1146 | 2506 | 1 | chr5B.!!$F1 | 1360 |
15 | TraesCS5D01G197300 | chr5B | 340609052 | 340613599 | 4547 | False | 584.250000 | 1855 | 87.4805 | 417 | 2624 | 4 | chr5B.!!$F6 | 2207 |
16 | TraesCS5D01G197300 | chr3A | 456904923 | 456906672 | 1749 | False | 1613.000000 | 1613 | 83.7870 | 834 | 2618 | 1 | chr3A.!!$F1 | 1784 |
17 | TraesCS5D01G197300 | chr2D | 209037119 | 209037693 | 574 | False | 939.000000 | 939 | 96.0340 | 3071 | 3650 | 1 | chr2D.!!$F3 | 579 |
18 | TraesCS5D01G197300 | chr2D | 60004107 | 60004679 | 572 | False | 929.000000 | 929 | 95.8480 | 3074 | 3650 | 1 | chr2D.!!$F1 | 576 |
19 | TraesCS5D01G197300 | chr2D | 147241443 | 147242027 | 584 | False | 918.000000 | 918 | 94.9150 | 3061 | 3650 | 1 | chr2D.!!$F2 | 589 |
20 | TraesCS5D01G197300 | chr1D | 212050019 | 212050589 | 570 | False | 937.000000 | 937 | 96.1810 | 3075 | 3650 | 1 | chr1D.!!$F2 | 575 |
21 | TraesCS5D01G197300 | chr1D | 212056930 | 212057501 | 571 | False | 933.000000 | 933 | 96.0140 | 3074 | 3650 | 1 | chr1D.!!$F3 | 576 |
22 | TraesCS5D01G197300 | chr3D | 11554673 | 11555244 | 571 | True | 933.000000 | 933 | 96.0140 | 3074 | 3650 | 1 | chr3D.!!$R1 | 576 |
23 | TraesCS5D01G197300 | chr7D | 412340895 | 412341465 | 570 | False | 931.000000 | 931 | 96.0070 | 3075 | 3650 | 1 | chr7D.!!$F1 | 575 |
24 | TraesCS5D01G197300 | chr6D | 419729421 | 419729992 | 571 | False | 928.000000 | 928 | 95.8410 | 3074 | 3650 | 1 | chr6D.!!$F1 | 576 |
25 | TraesCS5D01G197300 | chr4D | 434282756 | 434283327 | 571 | True | 928.000000 | 928 | 95.8410 | 3074 | 3650 | 1 | chr4D.!!$R1 | 576 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
165 | 166 | 0.032952 | TGTGCGCCTTAGACTTTCGT | 59.967 | 50.0 | 4.18 | 0.0 | 0.0 | 3.85 | F |
715 | 771 | 0.105964 | CTGTTCACCTTGGTGTCGGA | 59.894 | 55.0 | 18.05 | 0.0 | 0.0 | 4.55 | F |
1114 | 1401 | 0.107066 | TCATCAATCACCAGCCGCAT | 60.107 | 50.0 | 0.00 | 0.0 | 0.0 | 4.73 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1943 | 2347 | 0.175760 | TCAGTATCCGAACTGCTGCC | 59.824 | 55.0 | 0.00 | 0.0 | 45.34 | 4.85 | R |
2070 | 2522 | 0.461548 | CTCGCATGTTGGAGGAGCTA | 59.538 | 55.0 | 0.00 | 0.0 | 0.00 | 3.32 | R |
2997 | 11284 | 0.040958 | CTGTGACAGTTCGCTTTGGC | 60.041 | 55.0 | 4.01 | 0.0 | 33.01 | 4.52 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
53 | 54 | 9.817809 | AATGACTACTTTATTCATACACGACAT | 57.182 | 29.630 | 0.00 | 0.00 | 29.29 | 3.06 |
159 | 160 | 3.552604 | TTTTTCATGTGCGCCTTAGAC | 57.447 | 42.857 | 4.18 | 0.00 | 0.00 | 2.59 |
160 | 161 | 2.472695 | TTTCATGTGCGCCTTAGACT | 57.527 | 45.000 | 4.18 | 0.00 | 0.00 | 3.24 |
161 | 162 | 2.472695 | TTCATGTGCGCCTTAGACTT | 57.527 | 45.000 | 4.18 | 0.00 | 0.00 | 3.01 |
162 | 163 | 2.472695 | TCATGTGCGCCTTAGACTTT | 57.527 | 45.000 | 4.18 | 0.00 | 0.00 | 2.66 |
163 | 164 | 2.346803 | TCATGTGCGCCTTAGACTTTC | 58.653 | 47.619 | 4.18 | 0.00 | 0.00 | 2.62 |
164 | 165 | 1.061131 | CATGTGCGCCTTAGACTTTCG | 59.939 | 52.381 | 4.18 | 0.00 | 0.00 | 3.46 |
165 | 166 | 0.032952 | TGTGCGCCTTAGACTTTCGT | 59.967 | 50.000 | 4.18 | 0.00 | 0.00 | 3.85 |
166 | 167 | 0.438830 | GTGCGCCTTAGACTTTCGTG | 59.561 | 55.000 | 4.18 | 0.00 | 0.00 | 4.35 |
167 | 168 | 0.032952 | TGCGCCTTAGACTTTCGTGT | 59.967 | 50.000 | 4.18 | 0.00 | 0.00 | 4.49 |
168 | 169 | 1.270274 | TGCGCCTTAGACTTTCGTGTA | 59.730 | 47.619 | 4.18 | 0.00 | 0.00 | 2.90 |
169 | 170 | 1.652619 | GCGCCTTAGACTTTCGTGTAC | 59.347 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
170 | 171 | 1.909532 | CGCCTTAGACTTTCGTGTACG | 59.090 | 52.381 | 0.00 | 0.00 | 41.45 | 3.67 |
171 | 172 | 2.666619 | CGCCTTAGACTTTCGTGTACGT | 60.667 | 50.000 | 4.20 | 0.00 | 40.80 | 3.57 |
172 | 173 | 2.913590 | GCCTTAGACTTTCGTGTACGTC | 59.086 | 50.000 | 4.20 | 0.00 | 40.80 | 4.34 |
173 | 174 | 3.610114 | GCCTTAGACTTTCGTGTACGTCA | 60.610 | 47.826 | 4.20 | 0.00 | 40.80 | 4.35 |
174 | 175 | 4.539870 | CCTTAGACTTTCGTGTACGTCAA | 58.460 | 43.478 | 4.20 | 0.00 | 40.80 | 3.18 |
175 | 176 | 5.159209 | CCTTAGACTTTCGTGTACGTCAAT | 58.841 | 41.667 | 4.20 | 0.00 | 40.80 | 2.57 |
176 | 177 | 6.317088 | CCTTAGACTTTCGTGTACGTCAATA | 58.683 | 40.000 | 4.20 | 0.00 | 40.80 | 1.90 |
177 | 178 | 6.803320 | CCTTAGACTTTCGTGTACGTCAATAA | 59.197 | 38.462 | 4.20 | 0.00 | 40.80 | 1.40 |
178 | 179 | 7.201299 | CCTTAGACTTTCGTGTACGTCAATAAC | 60.201 | 40.741 | 4.20 | 0.00 | 40.80 | 1.89 |
179 | 180 | 5.522456 | AGACTTTCGTGTACGTCAATAACA | 58.478 | 37.500 | 4.20 | 0.00 | 40.80 | 2.41 |
180 | 181 | 6.154445 | AGACTTTCGTGTACGTCAATAACAT | 58.846 | 36.000 | 4.20 | 0.00 | 40.80 | 2.71 |
181 | 182 | 6.089016 | AGACTTTCGTGTACGTCAATAACATG | 59.911 | 38.462 | 4.20 | 0.00 | 40.80 | 3.21 |
182 | 183 | 4.571375 | TTCGTGTACGTCAATAACATGC | 57.429 | 40.909 | 4.20 | 0.00 | 40.80 | 4.06 |
183 | 184 | 3.840468 | TCGTGTACGTCAATAACATGCT | 58.160 | 40.909 | 4.20 | 0.00 | 40.80 | 3.79 |
184 | 185 | 4.239304 | TCGTGTACGTCAATAACATGCTT | 58.761 | 39.130 | 4.20 | 0.00 | 40.80 | 3.91 |
185 | 186 | 5.400703 | TCGTGTACGTCAATAACATGCTTA | 58.599 | 37.500 | 4.20 | 0.00 | 40.80 | 3.09 |
186 | 187 | 5.862860 | TCGTGTACGTCAATAACATGCTTAA | 59.137 | 36.000 | 4.20 | 0.00 | 40.80 | 1.85 |
187 | 188 | 5.949787 | CGTGTACGTCAATAACATGCTTAAC | 59.050 | 40.000 | 0.00 | 0.00 | 34.11 | 2.01 |
188 | 189 | 6.400197 | CGTGTACGTCAATAACATGCTTAACA | 60.400 | 38.462 | 0.00 | 0.00 | 34.11 | 2.41 |
189 | 190 | 7.461107 | GTGTACGTCAATAACATGCTTAACAT | 58.539 | 34.615 | 0.00 | 0.00 | 40.66 | 2.71 |
190 | 191 | 7.960738 | GTGTACGTCAATAACATGCTTAACATT | 59.039 | 33.333 | 0.00 | 0.00 | 36.64 | 2.71 |
191 | 192 | 8.508062 | TGTACGTCAATAACATGCTTAACATTT | 58.492 | 29.630 | 0.00 | 0.00 | 36.64 | 2.32 |
192 | 193 | 9.337091 | GTACGTCAATAACATGCTTAACATTTT | 57.663 | 29.630 | 0.00 | 0.00 | 36.64 | 1.82 |
193 | 194 | 8.810652 | ACGTCAATAACATGCTTAACATTTTT | 57.189 | 26.923 | 0.00 | 0.00 | 36.64 | 1.94 |
194 | 195 | 8.911662 | ACGTCAATAACATGCTTAACATTTTTC | 58.088 | 29.630 | 0.00 | 0.00 | 36.64 | 2.29 |
195 | 196 | 9.128107 | CGTCAATAACATGCTTAACATTTTTCT | 57.872 | 29.630 | 0.00 | 0.00 | 36.64 | 2.52 |
255 | 256 | 8.856153 | TTAATGCCTACTTCTTTTCATACACA | 57.144 | 30.769 | 0.00 | 0.00 | 0.00 | 3.72 |
256 | 257 | 7.944729 | AATGCCTACTTCTTTTCATACACAT | 57.055 | 32.000 | 0.00 | 0.00 | 0.00 | 3.21 |
257 | 258 | 7.944729 | ATGCCTACTTCTTTTCATACACATT | 57.055 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
258 | 259 | 7.759489 | TGCCTACTTCTTTTCATACACATTT | 57.241 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
259 | 260 | 7.592938 | TGCCTACTTCTTTTCATACACATTTG | 58.407 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
260 | 261 | 7.230510 | TGCCTACTTCTTTTCATACACATTTGT | 59.769 | 33.333 | 0.00 | 0.00 | 40.02 | 2.83 |
261 | 262 | 8.726988 | GCCTACTTCTTTTCATACACATTTGTA | 58.273 | 33.333 | 0.00 | 0.00 | 42.53 | 2.41 |
270 | 271 | 8.809159 | TTTCATACACATTTGTACATTTGTGG | 57.191 | 30.769 | 28.28 | 17.77 | 41.12 | 4.17 |
271 | 272 | 6.385843 | TCATACACATTTGTACATTTGTGGC | 58.614 | 36.000 | 28.28 | 0.00 | 41.12 | 5.01 |
272 | 273 | 4.662468 | ACACATTTGTACATTTGTGGCA | 57.338 | 36.364 | 28.28 | 0.52 | 42.86 | 4.92 |
273 | 274 | 5.212532 | ACACATTTGTACATTTGTGGCAT | 57.787 | 34.783 | 28.28 | 14.51 | 42.86 | 4.40 |
274 | 275 | 6.338214 | ACACATTTGTACATTTGTGGCATA | 57.662 | 33.333 | 28.28 | 0.00 | 42.86 | 3.14 |
275 | 276 | 6.155827 | ACACATTTGTACATTTGTGGCATAC | 58.844 | 36.000 | 28.28 | 0.00 | 42.86 | 2.39 |
276 | 277 | 6.155136 | CACATTTGTACATTTGTGGCATACA | 58.845 | 36.000 | 22.07 | 0.00 | 36.64 | 2.29 |
277 | 278 | 6.812656 | CACATTTGTACATTTGTGGCATACAT | 59.187 | 34.615 | 22.07 | 0.00 | 39.48 | 2.29 |
278 | 279 | 7.009448 | CACATTTGTACATTTGTGGCATACATC | 59.991 | 37.037 | 22.07 | 0.00 | 39.48 | 3.06 |
279 | 280 | 6.581171 | TTTGTACATTTGTGGCATACATCA | 57.419 | 33.333 | 0.00 | 0.00 | 39.48 | 3.07 |
280 | 281 | 5.816449 | TGTACATTTGTGGCATACATCAG | 57.184 | 39.130 | 0.00 | 0.00 | 39.48 | 2.90 |
281 | 282 | 4.639755 | TGTACATTTGTGGCATACATCAGG | 59.360 | 41.667 | 0.00 | 0.00 | 39.48 | 3.86 |
282 | 283 | 3.966979 | ACATTTGTGGCATACATCAGGA | 58.033 | 40.909 | 0.00 | 0.00 | 39.48 | 3.86 |
283 | 284 | 4.343231 | ACATTTGTGGCATACATCAGGAA | 58.657 | 39.130 | 0.00 | 0.00 | 39.48 | 3.36 |
284 | 285 | 4.957954 | ACATTTGTGGCATACATCAGGAAT | 59.042 | 37.500 | 0.00 | 0.00 | 39.48 | 3.01 |
285 | 286 | 6.128486 | ACATTTGTGGCATACATCAGGAATA | 58.872 | 36.000 | 0.00 | 0.00 | 39.48 | 1.75 |
286 | 287 | 6.779049 | ACATTTGTGGCATACATCAGGAATAT | 59.221 | 34.615 | 0.00 | 0.00 | 39.48 | 1.28 |
287 | 288 | 7.288389 | ACATTTGTGGCATACATCAGGAATATT | 59.712 | 33.333 | 0.00 | 0.00 | 39.48 | 1.28 |
288 | 289 | 7.658525 | TTTGTGGCATACATCAGGAATATTT | 57.341 | 32.000 | 0.00 | 0.00 | 39.48 | 1.40 |
289 | 290 | 7.658525 | TTGTGGCATACATCAGGAATATTTT | 57.341 | 32.000 | 0.00 | 0.00 | 39.48 | 1.82 |
290 | 291 | 7.658525 | TGTGGCATACATCAGGAATATTTTT | 57.341 | 32.000 | 0.00 | 0.00 | 33.42 | 1.94 |
291 | 292 | 8.759481 | TGTGGCATACATCAGGAATATTTTTA | 57.241 | 30.769 | 0.00 | 0.00 | 33.42 | 1.52 |
292 | 293 | 9.365906 | TGTGGCATACATCAGGAATATTTTTAT | 57.634 | 29.630 | 0.00 | 0.00 | 33.42 | 1.40 |
334 | 335 | 8.789825 | TTTTAATATTCCCACGTAAGCTTACA | 57.210 | 30.769 | 30.63 | 14.50 | 45.62 | 2.41 |
335 | 336 | 8.967664 | TTTAATATTCCCACGTAAGCTTACAT | 57.032 | 30.769 | 30.63 | 17.74 | 45.62 | 2.29 |
336 | 337 | 6.861065 | AATATTCCCACGTAAGCTTACATG | 57.139 | 37.500 | 30.63 | 26.73 | 45.62 | 3.21 |
337 | 338 | 2.684001 | TCCCACGTAAGCTTACATGG | 57.316 | 50.000 | 34.40 | 34.40 | 44.32 | 3.66 |
339 | 340 | 1.014352 | CCACGTAAGCTTACATGGGC | 58.986 | 55.000 | 33.97 | 10.89 | 41.83 | 5.36 |
340 | 341 | 1.014352 | CACGTAAGCTTACATGGGCC | 58.986 | 55.000 | 30.63 | 7.55 | 45.62 | 5.80 |
341 | 342 | 0.461339 | ACGTAAGCTTACATGGGCCG | 60.461 | 55.000 | 30.63 | 19.53 | 45.62 | 6.13 |
342 | 343 | 0.179094 | CGTAAGCTTACATGGGCCGA | 60.179 | 55.000 | 30.63 | 0.00 | 33.28 | 5.54 |
343 | 344 | 1.296727 | GTAAGCTTACATGGGCCGAC | 58.703 | 55.000 | 27.87 | 2.43 | 33.88 | 4.79 |
344 | 345 | 0.179094 | TAAGCTTACATGGGCCGACG | 60.179 | 55.000 | 0.86 | 0.00 | 0.00 | 5.12 |
345 | 346 | 2.869503 | AAGCTTACATGGGCCGACGG | 62.870 | 60.000 | 10.29 | 10.29 | 0.00 | 4.79 |
365 | 366 | 4.063967 | CACCGTGCGGCTGGTCTA | 62.064 | 66.667 | 13.39 | 0.00 | 35.96 | 2.59 |
366 | 367 | 3.760035 | ACCGTGCGGCTGGTCTAG | 61.760 | 66.667 | 10.87 | 0.00 | 39.32 | 2.43 |
367 | 368 | 3.449227 | CCGTGCGGCTGGTCTAGA | 61.449 | 66.667 | 0.00 | 0.00 | 0.00 | 2.43 |
368 | 369 | 2.571757 | CGTGCGGCTGGTCTAGAA | 59.428 | 61.111 | 0.00 | 0.00 | 0.00 | 2.10 |
369 | 370 | 1.080093 | CGTGCGGCTGGTCTAGAAA | 60.080 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
370 | 371 | 1.078759 | CGTGCGGCTGGTCTAGAAAG | 61.079 | 60.000 | 0.00 | 0.00 | 0.00 | 2.62 |
371 | 372 | 0.246635 | GTGCGGCTGGTCTAGAAAGA | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
372 | 373 | 0.532573 | TGCGGCTGGTCTAGAAAGAG | 59.467 | 55.000 | 0.00 | 0.00 | 30.45 | 2.85 |
373 | 374 | 0.533032 | GCGGCTGGTCTAGAAAGAGT | 59.467 | 55.000 | 7.70 | 0.00 | 30.45 | 3.24 |
374 | 375 | 1.066787 | GCGGCTGGTCTAGAAAGAGTT | 60.067 | 52.381 | 7.70 | 0.00 | 30.45 | 3.01 |
375 | 376 | 2.165845 | GCGGCTGGTCTAGAAAGAGTTA | 59.834 | 50.000 | 7.70 | 0.00 | 30.45 | 2.24 |
376 | 377 | 3.735514 | GCGGCTGGTCTAGAAAGAGTTAG | 60.736 | 52.174 | 7.70 | 0.00 | 30.45 | 2.34 |
377 | 378 | 3.735514 | CGGCTGGTCTAGAAAGAGTTAGC | 60.736 | 52.174 | 7.70 | 4.39 | 34.65 | 3.09 |
378 | 379 | 3.440228 | GCTGGTCTAGAAAGAGTTAGCG | 58.560 | 50.000 | 7.70 | 0.00 | 30.45 | 4.26 |
379 | 380 | 3.735514 | GCTGGTCTAGAAAGAGTTAGCGG | 60.736 | 52.174 | 7.70 | 0.00 | 30.45 | 5.52 |
380 | 381 | 2.758979 | TGGTCTAGAAAGAGTTAGCGGG | 59.241 | 50.000 | 0.00 | 0.00 | 30.45 | 6.13 |
381 | 382 | 2.481622 | GGTCTAGAAAGAGTTAGCGGGC | 60.482 | 54.545 | 0.00 | 0.00 | 30.45 | 6.13 |
382 | 383 | 2.427812 | GTCTAGAAAGAGTTAGCGGGCT | 59.572 | 50.000 | 0.00 | 0.00 | 30.45 | 5.19 |
401 | 402 | 3.124560 | GCTGAGGCCGACTAAATCTAAC | 58.875 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
466 | 467 | 2.966708 | CAGTTTCTGTTTTGATCGTGCG | 59.033 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
491 | 516 | 4.577834 | TTCCGAACGCAGATCACATATA | 57.422 | 40.909 | 0.00 | 0.00 | 0.00 | 0.86 |
505 | 530 | 7.496920 | CAGATCACATATAGCTTTGGTCTTTGA | 59.503 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
524 | 549 | 2.293122 | TGAAGGACATTGCCAACTTTCG | 59.707 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
556 | 581 | 3.209410 | AGCACTTGTGTTTCTTCTCCTG | 58.791 | 45.455 | 2.61 | 0.00 | 0.00 | 3.86 |
557 | 582 | 2.287248 | GCACTTGTGTTTCTTCTCCTGC | 60.287 | 50.000 | 2.61 | 0.00 | 0.00 | 4.85 |
564 | 589 | 1.230635 | TTTCTTCTCCTGCAGCACGC | 61.231 | 55.000 | 8.66 | 0.00 | 42.89 | 5.34 |
596 | 629 | 2.462456 | TCGCTGCTTCAGAATCTTGT | 57.538 | 45.000 | 0.00 | 0.00 | 32.44 | 3.16 |
609 | 642 | 7.664082 | TCAGAATCTTGTTTTTGCTCTCTAG | 57.336 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
610 | 643 | 6.652481 | TCAGAATCTTGTTTTTGCTCTCTAGG | 59.348 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
611 | 644 | 6.652481 | CAGAATCTTGTTTTTGCTCTCTAGGA | 59.348 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
612 | 645 | 7.336427 | CAGAATCTTGTTTTTGCTCTCTAGGAT | 59.664 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
613 | 646 | 8.543774 | AGAATCTTGTTTTTGCTCTCTAGGATA | 58.456 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
614 | 647 | 9.336171 | GAATCTTGTTTTTGCTCTCTAGGATAT | 57.664 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
616 | 649 | 9.692325 | ATCTTGTTTTTGCTCTCTAGGATATTT | 57.308 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
617 | 650 | 8.950210 | TCTTGTTTTTGCTCTCTAGGATATTTG | 58.050 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
618 | 651 | 7.630242 | TGTTTTTGCTCTCTAGGATATTTGG | 57.370 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
619 | 652 | 7.175104 | TGTTTTTGCTCTCTAGGATATTTGGT | 58.825 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
620 | 653 | 7.121168 | TGTTTTTGCTCTCTAGGATATTTGGTG | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 4.17 |
623 | 656 | 7.855784 | TTGCTCTCTAGGATATTTGGTGATA | 57.144 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
624 | 657 | 7.233389 | TGCTCTCTAGGATATTTGGTGATAC | 57.767 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
628 | 661 | 9.747898 | CTCTCTAGGATATTTGGTGATACTACT | 57.252 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
629 | 662 | 9.742144 | TCTCTAGGATATTTGGTGATACTACTC | 57.258 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
683 | 739 | 6.157211 | CCGATTTCTTAGAGTGTGTAGTGTT | 58.843 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
689 | 745 | 8.631480 | TTCTTAGAGTGTGTAGTGTTCAGATA | 57.369 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
715 | 771 | 0.105964 | CTGTTCACCTTGGTGTCGGA | 59.894 | 55.000 | 18.05 | 0.00 | 0.00 | 4.55 |
717 | 773 | 1.068417 | TTCACCTTGGTGTCGGACG | 59.932 | 57.895 | 18.05 | 0.00 | 0.00 | 4.79 |
718 | 774 | 1.393487 | TTCACCTTGGTGTCGGACGA | 61.393 | 55.000 | 18.05 | 0.00 | 0.00 | 4.20 |
719 | 775 | 1.372997 | CACCTTGGTGTCGGACGAG | 60.373 | 63.158 | 11.39 | 0.00 | 0.00 | 4.18 |
721 | 777 | 1.111116 | ACCTTGGTGTCGGACGAGAA | 61.111 | 55.000 | 3.34 | 0.00 | 0.00 | 2.87 |
722 | 778 | 0.388649 | CCTTGGTGTCGGACGAGAAG | 60.389 | 60.000 | 3.34 | 5.01 | 0.00 | 2.85 |
723 | 779 | 0.388649 | CTTGGTGTCGGACGAGAAGG | 60.389 | 60.000 | 3.34 | 0.00 | 0.00 | 3.46 |
724 | 780 | 2.126031 | GGTGTCGGACGAGAAGGC | 60.126 | 66.667 | 3.34 | 0.00 | 0.00 | 4.35 |
732 | 788 | 2.273908 | GACGAGAAGGCCTGTGGTA | 58.726 | 57.895 | 5.69 | 0.00 | 0.00 | 3.25 |
734 | 790 | 1.218316 | CGAGAAGGCCTGTGGTACC | 59.782 | 63.158 | 5.69 | 4.43 | 0.00 | 3.34 |
735 | 791 | 1.258445 | CGAGAAGGCCTGTGGTACCT | 61.258 | 60.000 | 5.69 | 0.00 | 34.45 | 3.08 |
737 | 793 | 0.178903 | AGAAGGCCTGTGGTACCTGA | 60.179 | 55.000 | 5.69 | 0.00 | 32.92 | 3.86 |
759 | 826 | 2.689471 | TCTTGCAGCAAAAGATGTGTGT | 59.311 | 40.909 | 9.65 | 0.00 | 0.00 | 3.72 |
795 | 862 | 5.195001 | AGACTGAAGACTGAACTCAACTC | 57.805 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
796 | 863 | 4.646945 | AGACTGAAGACTGAACTCAACTCA | 59.353 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
797 | 864 | 5.304101 | AGACTGAAGACTGAACTCAACTCAT | 59.696 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
798 | 865 | 5.295950 | ACTGAAGACTGAACTCAACTCATG | 58.704 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
799 | 866 | 5.069648 | ACTGAAGACTGAACTCAACTCATGA | 59.930 | 40.000 | 0.00 | 0.00 | 36.38 | 3.07 |
801 | 868 | 7.039434 | ACTGAAGACTGAACTCAACTCATGATA | 60.039 | 37.037 | 0.00 | 0.00 | 37.44 | 2.15 |
802 | 869 | 7.093354 | TGAAGACTGAACTCAACTCATGATAC | 58.907 | 38.462 | 0.00 | 0.00 | 37.44 | 2.24 |
803 | 870 | 5.645624 | AGACTGAACTCAACTCATGATACG | 58.354 | 41.667 | 0.00 | 0.00 | 37.44 | 3.06 |
808 | 875 | 6.199393 | TGAACTCAACTCATGATACGATACG | 58.801 | 40.000 | 0.00 | 0.00 | 37.44 | 3.06 |
810 | 877 | 6.561737 | ACTCAACTCATGATACGATACGAT | 57.438 | 37.500 | 0.00 | 0.00 | 37.44 | 3.73 |
811 | 878 | 7.668525 | ACTCAACTCATGATACGATACGATA | 57.331 | 36.000 | 0.00 | 0.00 | 37.44 | 2.92 |
812 | 879 | 8.270080 | ACTCAACTCATGATACGATACGATAT | 57.730 | 34.615 | 0.00 | 0.00 | 37.44 | 1.63 |
814 | 881 | 9.856803 | CTCAACTCATGATACGATACGATATAG | 57.143 | 37.037 | 0.00 | 0.00 | 37.44 | 1.31 |
815 | 882 | 8.827677 | TCAACTCATGATACGATACGATATAGG | 58.172 | 37.037 | 0.00 | 0.00 | 31.50 | 2.57 |
817 | 884 | 8.596271 | ACTCATGATACGATACGATATAGGAG | 57.404 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
818 | 885 | 7.171848 | ACTCATGATACGATACGATATAGGAGC | 59.828 | 40.741 | 0.00 | 0.00 | 0.00 | 4.70 |
819 | 886 | 6.427242 | TCATGATACGATACGATATAGGAGCC | 59.573 | 42.308 | 0.00 | 0.00 | 0.00 | 4.70 |
820 | 887 | 4.748600 | TGATACGATACGATATAGGAGCCG | 59.251 | 45.833 | 0.00 | 0.00 | 0.00 | 5.52 |
821 | 888 | 2.286872 | ACGATACGATATAGGAGCCGG | 58.713 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
823 | 890 | 2.744166 | CGATACGATATAGGAGCCGGGA | 60.744 | 54.545 | 2.18 | 0.00 | 0.00 | 5.14 |
824 | 891 | 2.885135 | TACGATATAGGAGCCGGGAA | 57.115 | 50.000 | 2.18 | 0.00 | 0.00 | 3.97 |
825 | 892 | 2.005370 | ACGATATAGGAGCCGGGAAA | 57.995 | 50.000 | 2.18 | 0.00 | 0.00 | 3.13 |
827 | 894 | 2.168496 | CGATATAGGAGCCGGGAAAGA | 58.832 | 52.381 | 2.18 | 0.00 | 0.00 | 2.52 |
828 | 895 | 2.561419 | CGATATAGGAGCCGGGAAAGAA | 59.439 | 50.000 | 2.18 | 0.00 | 0.00 | 2.52 |
829 | 896 | 3.006537 | CGATATAGGAGCCGGGAAAGAAA | 59.993 | 47.826 | 2.18 | 0.00 | 0.00 | 2.52 |
830 | 897 | 4.322801 | CGATATAGGAGCCGGGAAAGAAAT | 60.323 | 45.833 | 2.18 | 0.00 | 0.00 | 2.17 |
831 | 898 | 2.710096 | TAGGAGCCGGGAAAGAAATG | 57.290 | 50.000 | 2.18 | 0.00 | 0.00 | 2.32 |
832 | 899 | 0.991920 | AGGAGCCGGGAAAGAAATGA | 59.008 | 50.000 | 2.18 | 0.00 | 0.00 | 2.57 |
858 | 1059 | 1.472376 | CGAGATGGCCTCAAACTCCTC | 60.472 | 57.143 | 3.32 | 0.00 | 42.06 | 3.71 |
860 | 1061 | 1.988107 | AGATGGCCTCAAACTCCTCAA | 59.012 | 47.619 | 3.32 | 0.00 | 0.00 | 3.02 |
871 | 1074 | 6.183360 | CCTCAAACTCCTCAATCATGCTTAAG | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
873 | 1076 | 4.500499 | ACTCCTCAATCATGCTTAAGCT | 57.500 | 40.909 | 26.90 | 10.88 | 42.66 | 3.74 |
874 | 1077 | 4.853007 | ACTCCTCAATCATGCTTAAGCTT | 58.147 | 39.130 | 26.90 | 18.70 | 42.66 | 3.74 |
875 | 1078 | 5.994250 | ACTCCTCAATCATGCTTAAGCTTA | 58.006 | 37.500 | 26.90 | 13.26 | 42.66 | 3.09 |
876 | 1079 | 6.418101 | ACTCCTCAATCATGCTTAAGCTTAA | 58.582 | 36.000 | 26.90 | 17.71 | 42.66 | 1.85 |
878 | 1081 | 7.559170 | ACTCCTCAATCATGCTTAAGCTTAATT | 59.441 | 33.333 | 26.90 | 16.14 | 42.66 | 1.40 |
879 | 1082 | 8.978874 | TCCTCAATCATGCTTAAGCTTAATTA | 57.021 | 30.769 | 26.90 | 11.40 | 42.66 | 1.40 |
880 | 1083 | 9.407380 | TCCTCAATCATGCTTAAGCTTAATTAA | 57.593 | 29.630 | 26.90 | 5.54 | 42.66 | 1.40 |
906 | 1109 | 3.116079 | CTTGGCACCAAGCTTGAAATT | 57.884 | 42.857 | 28.05 | 6.04 | 45.38 | 1.82 |
912 | 1115 | 1.330306 | CCAAGCTTGAAATTCACGCG | 58.670 | 50.000 | 28.05 | 3.53 | 45.03 | 6.01 |
951 | 1157 | 0.778223 | CGGATCACATCACATACGCG | 59.222 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 |
991 | 1223 | 0.392193 | GGCATCACACCTGACCTGAG | 60.392 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
992 | 1224 | 1.023513 | GCATCACACCTGACCTGAGC | 61.024 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
993 | 1225 | 0.612229 | CATCACACCTGACCTGAGCT | 59.388 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
1050 | 1299 | 0.390472 | CACCTCGCTCTGACCTTTCC | 60.390 | 60.000 | 0.00 | 0.00 | 0.00 | 3.13 |
1051 | 1300 | 1.219393 | CCTCGCTCTGACCTTTCCC | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 3.97 |
1052 | 1301 | 1.544825 | CCTCGCTCTGACCTTTCCCA | 61.545 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
1053 | 1302 | 0.539051 | CTCGCTCTGACCTTTCCCAT | 59.461 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1054 | 1303 | 0.537188 | TCGCTCTGACCTTTCCCATC | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1055 | 1304 | 0.807667 | CGCTCTGACCTTTCCCATCG | 60.808 | 60.000 | 0.00 | 0.00 | 0.00 | 3.84 |
1056 | 1305 | 0.537188 | GCTCTGACCTTTCCCATCGA | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 3.59 |
1057 | 1306 | 1.740718 | GCTCTGACCTTTCCCATCGAC | 60.741 | 57.143 | 0.00 | 0.00 | 0.00 | 4.20 |
1058 | 1307 | 0.530744 | TCTGACCTTTCCCATCGACG | 59.469 | 55.000 | 0.00 | 0.00 | 0.00 | 5.12 |
1098 | 1378 | 1.765314 | CTTCCCCATCGTCTCCTTCAT | 59.235 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
1111 | 1398 | 1.019673 | CCTTCATCAATCACCAGCCG | 58.980 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1112 | 1399 | 0.379669 | CTTCATCAATCACCAGCCGC | 59.620 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
1113 | 1400 | 0.322366 | TTCATCAATCACCAGCCGCA | 60.322 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1114 | 1401 | 0.107066 | TCATCAATCACCAGCCGCAT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 4.73 |
1117 | 1404 | 1.452651 | CAATCACCAGCCGCATCCT | 60.453 | 57.895 | 0.00 | 0.00 | 0.00 | 3.24 |
1118 | 1405 | 1.153086 | AATCACCAGCCGCATCCTC | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 3.71 |
1126 | 1413 | 4.292178 | CCGCATCCTCTCGCCTCC | 62.292 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1128 | 1415 | 2.790791 | CGCATCCTCTCGCCTCCTT | 61.791 | 63.158 | 0.00 | 0.00 | 0.00 | 3.36 |
1673 | 2004 | 0.507358 | GGTTGACAAGTTCGCTCGAC | 59.493 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1888 | 2247 | 2.161078 | TTGACATCTGCGGTGGCGTA | 62.161 | 55.000 | 0.00 | 0.00 | 44.10 | 4.42 |
1926 | 2324 | 1.135859 | CGAAGATGAAACAGCCAGTGC | 60.136 | 52.381 | 0.00 | 0.00 | 37.95 | 4.40 |
1991 | 2410 | 3.911365 | CGACAGCGATTCAGATACTGATC | 59.089 | 47.826 | 2.30 | 0.00 | 39.00 | 2.92 |
1993 | 2412 | 3.894427 | ACAGCGATTCAGATACTGATCCT | 59.106 | 43.478 | 2.30 | 1.59 | 40.39 | 3.24 |
2007 | 2426 | 2.866085 | GATCCTGGCAGCAGCGACTT | 62.866 | 60.000 | 9.56 | 0.00 | 43.41 | 3.01 |
2070 | 2522 | 0.665835 | GATGAGATCGTCGACAGCCT | 59.334 | 55.000 | 17.16 | 8.29 | 0.00 | 4.58 |
2367 | 2861 | 2.869041 | ACCTAGAGGAAGGGGAGATTCT | 59.131 | 50.000 | 1.60 | 0.00 | 41.32 | 2.40 |
2390 | 2884 | 1.560923 | GTGATCGTCGTTGCTAGCAT | 58.439 | 50.000 | 20.13 | 0.30 | 0.00 | 3.79 |
2411 | 2905 | 3.278574 | TGGTGCTATAACAAGTGATGCC | 58.721 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
2452 | 6028 | 5.059833 | CCTCACAGAAAACTTGTAGCTCTT | 58.940 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
2529 | 9431 | 9.823098 | GATGCACAGAGTATCATATTCATTTTC | 57.177 | 33.333 | 0.00 | 0.00 | 38.97 | 2.29 |
2831 | 10012 | 9.814899 | TCTTTTTCAAAATGTATTTGAGCTCAA | 57.185 | 25.926 | 25.16 | 25.16 | 39.30 | 3.02 |
2943 | 11230 | 7.283127 | TGCTTATCATAAAAGTTGGTCCATCTC | 59.717 | 37.037 | 2.83 | 0.00 | 0.00 | 2.75 |
2944 | 11231 | 7.283127 | GCTTATCATAAAAGTTGGTCCATCTCA | 59.717 | 37.037 | 2.83 | 0.00 | 0.00 | 3.27 |
2957 | 11244 | 6.882656 | TGGTCCATCTCAGAGAAAGATTAAG | 58.117 | 40.000 | 3.63 | 0.00 | 31.05 | 1.85 |
2958 | 11245 | 6.669591 | TGGTCCATCTCAGAGAAAGATTAAGA | 59.330 | 38.462 | 3.63 | 0.00 | 31.05 | 2.10 |
2959 | 11246 | 6.983890 | GGTCCATCTCAGAGAAAGATTAAGAC | 59.016 | 42.308 | 3.63 | 3.33 | 31.05 | 3.01 |
2960 | 11247 | 6.695278 | GTCCATCTCAGAGAAAGATTAAGACG | 59.305 | 42.308 | 3.63 | 0.00 | 31.05 | 4.18 |
2961 | 11248 | 6.603599 | TCCATCTCAGAGAAAGATTAAGACGA | 59.396 | 38.462 | 3.63 | 0.00 | 31.05 | 4.20 |
2962 | 11249 | 7.122799 | TCCATCTCAGAGAAAGATTAAGACGAA | 59.877 | 37.037 | 3.63 | 0.00 | 31.05 | 3.85 |
2963 | 11250 | 7.761704 | CCATCTCAGAGAAAGATTAAGACGAAA | 59.238 | 37.037 | 3.63 | 0.00 | 31.05 | 3.46 |
2964 | 11251 | 9.144747 | CATCTCAGAGAAAGATTAAGACGAAAA | 57.855 | 33.333 | 3.63 | 0.00 | 31.05 | 2.29 |
2965 | 11252 | 9.712305 | ATCTCAGAGAAAGATTAAGACGAAAAA | 57.288 | 29.630 | 3.63 | 0.00 | 29.01 | 1.94 |
2966 | 11253 | 9.197694 | TCTCAGAGAAAGATTAAGACGAAAAAG | 57.802 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2967 | 11254 | 8.311650 | TCAGAGAAAGATTAAGACGAAAAAGG | 57.688 | 34.615 | 0.00 | 0.00 | 0.00 | 3.11 |
2968 | 11255 | 7.387948 | TCAGAGAAAGATTAAGACGAAAAAGGG | 59.612 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
2969 | 11256 | 7.173390 | CAGAGAAAGATTAAGACGAAAAAGGGT | 59.827 | 37.037 | 0.00 | 0.00 | 0.00 | 4.34 |
2970 | 11257 | 7.720074 | AGAGAAAGATTAAGACGAAAAAGGGTT | 59.280 | 33.333 | 0.00 | 0.00 | 0.00 | 4.11 |
2971 | 11258 | 7.872881 | AGAAAGATTAAGACGAAAAAGGGTTC | 58.127 | 34.615 | 0.00 | 0.00 | 0.00 | 3.62 |
2972 | 11259 | 6.570672 | AAGATTAAGACGAAAAAGGGTTCC | 57.429 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
2973 | 11260 | 5.008331 | AGATTAAGACGAAAAAGGGTTCCC | 58.992 | 41.667 | 0.00 | 0.00 | 0.00 | 3.97 |
2974 | 11261 | 1.991121 | AAGACGAAAAAGGGTTCCCC | 58.009 | 50.000 | 4.02 | 0.00 | 45.90 | 4.81 |
2985 | 11272 | 2.670019 | GGGTTCCCCCGCTTTATATT | 57.330 | 50.000 | 0.00 | 0.00 | 42.41 | 1.28 |
2986 | 11273 | 3.793819 | GGGTTCCCCCGCTTTATATTA | 57.206 | 47.619 | 0.00 | 0.00 | 42.41 | 0.98 |
2987 | 11274 | 4.311520 | GGGTTCCCCCGCTTTATATTAT | 57.688 | 45.455 | 0.00 | 0.00 | 42.41 | 1.28 |
2988 | 11275 | 5.440207 | GGGTTCCCCCGCTTTATATTATA | 57.560 | 43.478 | 0.00 | 0.00 | 42.41 | 0.98 |
2989 | 11276 | 5.818887 | GGGTTCCCCCGCTTTATATTATAA | 58.181 | 41.667 | 0.00 | 0.00 | 42.41 | 0.98 |
2990 | 11277 | 6.247676 | GGGTTCCCCCGCTTTATATTATAAA | 58.752 | 40.000 | 8.26 | 8.26 | 42.41 | 1.40 |
2991 | 11278 | 6.376299 | GGGTTCCCCCGCTTTATATTATAAAG | 59.624 | 42.308 | 23.28 | 23.28 | 42.41 | 1.85 |
2992 | 11279 | 8.974094 | GGGTTCCCCCGCTTTATATTATAAAGC | 61.974 | 44.444 | 32.67 | 32.67 | 45.01 | 3.51 |
3003 | 11290 | 9.683069 | CTTTATATTATAAAGCACTGGCCAAAG | 57.317 | 33.333 | 18.54 | 2.77 | 42.56 | 2.77 |
3004 | 11291 | 3.866883 | TTATAAAGCACTGGCCAAAGC | 57.133 | 42.857 | 18.76 | 18.76 | 42.56 | 3.51 |
3005 | 11292 | 0.527565 | ATAAAGCACTGGCCAAAGCG | 59.472 | 50.000 | 19.86 | 5.84 | 42.56 | 4.68 |
3006 | 11293 | 0.536233 | TAAAGCACTGGCCAAAGCGA | 60.536 | 50.000 | 19.86 | 9.49 | 42.56 | 4.93 |
3007 | 11294 | 1.391157 | AAAGCACTGGCCAAAGCGAA | 61.391 | 50.000 | 19.86 | 0.00 | 42.56 | 4.70 |
3008 | 11295 | 2.050077 | GCACTGGCCAAAGCGAAC | 60.050 | 61.111 | 7.01 | 0.00 | 41.24 | 3.95 |
3009 | 11296 | 2.555547 | GCACTGGCCAAAGCGAACT | 61.556 | 57.895 | 7.01 | 0.00 | 41.24 | 3.01 |
3010 | 11297 | 1.283793 | CACTGGCCAAAGCGAACTG | 59.716 | 57.895 | 7.01 | 0.00 | 41.24 | 3.16 |
3011 | 11298 | 1.152963 | ACTGGCCAAAGCGAACTGT | 60.153 | 52.632 | 7.01 | 0.00 | 41.24 | 3.55 |
3012 | 11299 | 1.166531 | ACTGGCCAAAGCGAACTGTC | 61.167 | 55.000 | 7.01 | 0.00 | 41.24 | 3.51 |
3013 | 11300 | 1.153066 | TGGCCAAAGCGAACTGTCA | 60.153 | 52.632 | 0.61 | 0.00 | 41.24 | 3.58 |
3014 | 11301 | 1.282875 | GGCCAAAGCGAACTGTCAC | 59.717 | 57.895 | 0.00 | 0.00 | 41.24 | 3.67 |
3015 | 11302 | 1.444119 | GGCCAAAGCGAACTGTCACA | 61.444 | 55.000 | 0.00 | 0.00 | 41.24 | 3.58 |
3016 | 11303 | 0.040958 | GCCAAAGCGAACTGTCACAG | 60.041 | 55.000 | 2.22 | 2.22 | 37.52 | 3.66 |
3017 | 11304 | 1.581934 | CCAAAGCGAACTGTCACAGA | 58.418 | 50.000 | 13.14 | 0.00 | 35.18 | 3.41 |
3018 | 11305 | 2.146342 | CCAAAGCGAACTGTCACAGAT | 58.854 | 47.619 | 13.14 | 0.00 | 35.18 | 2.90 |
3019 | 11306 | 3.325870 | CCAAAGCGAACTGTCACAGATA | 58.674 | 45.455 | 13.14 | 0.00 | 35.18 | 1.98 |
3020 | 11307 | 3.123621 | CCAAAGCGAACTGTCACAGATAC | 59.876 | 47.826 | 13.14 | 1.24 | 35.18 | 2.24 |
3021 | 11308 | 3.660501 | AAGCGAACTGTCACAGATACA | 57.339 | 42.857 | 13.14 | 0.00 | 35.18 | 2.29 |
3023 | 11310 | 2.820197 | AGCGAACTGTCACAGATACAGA | 59.180 | 45.455 | 13.14 | 0.00 | 45.89 | 3.41 |
3024 | 11311 | 3.255888 | AGCGAACTGTCACAGATACAGAA | 59.744 | 43.478 | 13.14 | 0.00 | 45.89 | 3.02 |
3025 | 11312 | 3.987868 | GCGAACTGTCACAGATACAGAAA | 59.012 | 43.478 | 13.14 | 0.00 | 45.89 | 2.52 |
3026 | 11313 | 4.143305 | GCGAACTGTCACAGATACAGAAAC | 60.143 | 45.833 | 13.14 | 1.13 | 45.89 | 2.78 |
3027 | 11314 | 4.088638 | CGAACTGTCACAGATACAGAAACG | 59.911 | 45.833 | 13.14 | 8.13 | 45.89 | 3.60 |
3028 | 11315 | 4.585955 | ACTGTCACAGATACAGAAACGT | 57.414 | 40.909 | 13.14 | 0.00 | 45.89 | 3.99 |
3029 | 11316 | 4.299155 | ACTGTCACAGATACAGAAACGTG | 58.701 | 43.478 | 13.14 | 0.00 | 45.89 | 4.49 |
3030 | 11317 | 4.202121 | ACTGTCACAGATACAGAAACGTGT | 60.202 | 41.667 | 13.14 | 0.00 | 45.89 | 4.49 |
3031 | 11318 | 4.689071 | TGTCACAGATACAGAAACGTGTT | 58.311 | 39.130 | 0.00 | 0.00 | 31.46 | 3.32 |
3032 | 11319 | 4.743151 | TGTCACAGATACAGAAACGTGTTC | 59.257 | 41.667 | 0.00 | 0.00 | 31.46 | 3.18 |
3033 | 11320 | 4.150098 | GTCACAGATACAGAAACGTGTTCC | 59.850 | 45.833 | 0.00 | 0.00 | 31.46 | 3.62 |
3034 | 11321 | 4.055360 | CACAGATACAGAAACGTGTTCCA | 58.945 | 43.478 | 0.00 | 0.00 | 31.46 | 3.53 |
3035 | 11322 | 4.509970 | CACAGATACAGAAACGTGTTCCAA | 59.490 | 41.667 | 0.00 | 0.00 | 31.46 | 3.53 |
3036 | 11323 | 4.510340 | ACAGATACAGAAACGTGTTCCAAC | 59.490 | 41.667 | 0.00 | 0.00 | 31.46 | 3.77 |
3037 | 11324 | 4.509970 | CAGATACAGAAACGTGTTCCAACA | 59.490 | 41.667 | 0.00 | 0.00 | 36.38 | 3.33 |
3038 | 11325 | 5.007234 | CAGATACAGAAACGTGTTCCAACAA | 59.993 | 40.000 | 0.00 | 0.00 | 41.21 | 2.83 |
3039 | 11326 | 3.481112 | ACAGAAACGTGTTCCAACAAC | 57.519 | 42.857 | 0.00 | 0.00 | 41.21 | 3.32 |
3040 | 11327 | 2.814919 | ACAGAAACGTGTTCCAACAACA | 59.185 | 40.909 | 0.00 | 0.00 | 41.21 | 3.33 |
3041 | 11328 | 3.442273 | ACAGAAACGTGTTCCAACAACAT | 59.558 | 39.130 | 0.00 | 0.00 | 41.21 | 2.71 |
3042 | 11329 | 4.035017 | CAGAAACGTGTTCCAACAACATC | 58.965 | 43.478 | 0.00 | 0.00 | 41.21 | 3.06 |
3043 | 11330 | 3.692101 | AGAAACGTGTTCCAACAACATCA | 59.308 | 39.130 | 0.00 | 0.00 | 41.21 | 3.07 |
3044 | 11331 | 4.156922 | AGAAACGTGTTCCAACAACATCAA | 59.843 | 37.500 | 0.00 | 0.00 | 41.21 | 2.57 |
3045 | 11332 | 3.414549 | ACGTGTTCCAACAACATCAAC | 57.585 | 42.857 | 0.00 | 0.00 | 41.21 | 3.18 |
3046 | 11333 | 2.750166 | ACGTGTTCCAACAACATCAACA | 59.250 | 40.909 | 0.00 | 0.00 | 41.21 | 3.33 |
3047 | 11334 | 3.380004 | ACGTGTTCCAACAACATCAACAT | 59.620 | 39.130 | 0.00 | 0.00 | 41.21 | 2.71 |
3048 | 11335 | 4.576873 | ACGTGTTCCAACAACATCAACATA | 59.423 | 37.500 | 0.00 | 0.00 | 41.21 | 2.29 |
3049 | 11336 | 5.240623 | ACGTGTTCCAACAACATCAACATAT | 59.759 | 36.000 | 0.00 | 0.00 | 41.21 | 1.78 |
3050 | 11337 | 5.568677 | CGTGTTCCAACAACATCAACATATG | 59.431 | 40.000 | 0.00 | 0.00 | 41.21 | 1.78 |
3051 | 11338 | 6.567511 | CGTGTTCCAACAACATCAACATATGA | 60.568 | 38.462 | 10.38 | 0.00 | 41.21 | 2.15 |
3052 | 11339 | 6.803320 | GTGTTCCAACAACATCAACATATGAG | 59.197 | 38.462 | 10.38 | 1.52 | 40.27 | 2.90 |
3053 | 11340 | 6.072008 | TGTTCCAACAACATCAACATATGAGG | 60.072 | 38.462 | 10.38 | 0.70 | 38.71 | 3.86 |
3054 | 11341 | 4.398988 | TCCAACAACATCAACATATGAGGC | 59.601 | 41.667 | 10.38 | 0.00 | 43.58 | 4.70 |
3055 | 11342 | 4.440525 | CCAACAACATCAACATATGAGGCC | 60.441 | 45.833 | 10.38 | 0.00 | 43.58 | 5.19 |
3056 | 11343 | 3.966979 | ACAACATCAACATATGAGGCCA | 58.033 | 40.909 | 10.38 | 0.00 | 43.58 | 5.36 |
3057 | 11344 | 4.539726 | ACAACATCAACATATGAGGCCAT | 58.460 | 39.130 | 10.38 | 0.00 | 43.58 | 4.40 |
3058 | 11345 | 4.957954 | ACAACATCAACATATGAGGCCATT | 59.042 | 37.500 | 10.38 | 0.00 | 43.58 | 3.16 |
3059 | 11346 | 5.422970 | ACAACATCAACATATGAGGCCATTT | 59.577 | 36.000 | 10.38 | 0.00 | 43.58 | 2.32 |
3060 | 11347 | 5.779529 | ACATCAACATATGAGGCCATTTC | 57.220 | 39.130 | 10.38 | 0.00 | 43.58 | 2.17 |
3061 | 11348 | 5.452255 | ACATCAACATATGAGGCCATTTCT | 58.548 | 37.500 | 10.38 | 0.00 | 43.58 | 2.52 |
3062 | 11349 | 6.604171 | ACATCAACATATGAGGCCATTTCTA | 58.396 | 36.000 | 10.38 | 0.00 | 43.58 | 2.10 |
3063 | 11350 | 6.713903 | ACATCAACATATGAGGCCATTTCTAG | 59.286 | 38.462 | 10.38 | 0.00 | 43.58 | 2.43 |
3064 | 11351 | 6.499106 | TCAACATATGAGGCCATTTCTAGA | 57.501 | 37.500 | 10.38 | 0.00 | 34.31 | 2.43 |
3065 | 11352 | 6.528321 | TCAACATATGAGGCCATTTCTAGAG | 58.472 | 40.000 | 10.38 | 0.00 | 34.31 | 2.43 |
3066 | 11353 | 5.495926 | ACATATGAGGCCATTTCTAGAGG | 57.504 | 43.478 | 10.38 | 0.00 | 34.31 | 3.69 |
3067 | 11354 | 9.794828 | TCAACATATGAGGCCATTTCTAGAGGC | 62.795 | 44.444 | 10.38 | 12.08 | 39.39 | 4.70 |
3093 | 11380 | 5.975988 | TTCTGAAGGAAATATGCCCTAGT | 57.024 | 39.130 | 0.00 | 0.00 | 31.36 | 2.57 |
3191 | 12070 | 4.039488 | ACCGGAAACTTAGTACATGTGTGA | 59.961 | 41.667 | 9.46 | 0.00 | 0.00 | 3.58 |
3192 | 12071 | 4.992319 | CCGGAAACTTAGTACATGTGTGAA | 59.008 | 41.667 | 9.11 | 0.00 | 0.00 | 3.18 |
3193 | 12072 | 5.642063 | CCGGAAACTTAGTACATGTGTGAAT | 59.358 | 40.000 | 9.11 | 0.00 | 0.00 | 2.57 |
3194 | 12073 | 6.148811 | CCGGAAACTTAGTACATGTGTGAATT | 59.851 | 38.462 | 9.11 | 0.00 | 0.00 | 2.17 |
3195 | 12074 | 7.015289 | CGGAAACTTAGTACATGTGTGAATTG | 58.985 | 38.462 | 9.11 | 0.00 | 0.00 | 2.32 |
3359 | 12471 | 1.768870 | ACCCATCCGTTAGCTTAGCAT | 59.231 | 47.619 | 7.07 | 0.00 | 0.00 | 3.79 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 9.817809 | ATGTCGTGTATGAATAAAGTAGTCATT | 57.182 | 29.630 | 3.81 | 0.00 | 40.20 | 2.57 |
139 | 140 | 3.146066 | AGTCTAAGGCGCACATGAAAAA | 58.854 | 40.909 | 10.83 | 0.00 | 0.00 | 1.94 |
140 | 141 | 2.778299 | AGTCTAAGGCGCACATGAAAA | 58.222 | 42.857 | 10.83 | 0.00 | 0.00 | 2.29 |
141 | 142 | 2.472695 | AGTCTAAGGCGCACATGAAA | 57.527 | 45.000 | 10.83 | 0.00 | 0.00 | 2.69 |
142 | 143 | 2.472695 | AAGTCTAAGGCGCACATGAA | 57.527 | 45.000 | 10.83 | 0.00 | 0.00 | 2.57 |
143 | 144 | 2.346803 | GAAAGTCTAAGGCGCACATGA | 58.653 | 47.619 | 10.83 | 0.00 | 0.00 | 3.07 |
144 | 145 | 1.061131 | CGAAAGTCTAAGGCGCACATG | 59.939 | 52.381 | 10.83 | 0.00 | 0.00 | 3.21 |
145 | 146 | 1.337823 | ACGAAAGTCTAAGGCGCACAT | 60.338 | 47.619 | 10.83 | 0.00 | 44.19 | 3.21 |
146 | 147 | 0.032952 | ACGAAAGTCTAAGGCGCACA | 59.967 | 50.000 | 10.83 | 0.00 | 44.19 | 4.57 |
147 | 148 | 2.823628 | ACGAAAGTCTAAGGCGCAC | 58.176 | 52.632 | 10.83 | 0.00 | 44.19 | 5.34 |
159 | 160 | 5.013236 | GCATGTTATTGACGTACACGAAAG | 58.987 | 41.667 | 9.04 | 0.00 | 43.02 | 2.62 |
160 | 161 | 4.687018 | AGCATGTTATTGACGTACACGAAA | 59.313 | 37.500 | 9.04 | 3.18 | 43.02 | 3.46 |
161 | 162 | 4.239304 | AGCATGTTATTGACGTACACGAA | 58.761 | 39.130 | 9.04 | 0.00 | 43.02 | 3.85 |
162 | 163 | 3.840468 | AGCATGTTATTGACGTACACGA | 58.160 | 40.909 | 9.04 | 0.00 | 43.02 | 4.35 |
163 | 164 | 4.577687 | AAGCATGTTATTGACGTACACG | 57.422 | 40.909 | 0.00 | 0.00 | 46.33 | 4.49 |
164 | 165 | 6.823531 | TGTTAAGCATGTTATTGACGTACAC | 58.176 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
165 | 166 | 7.603963 | ATGTTAAGCATGTTATTGACGTACA | 57.396 | 32.000 | 0.00 | 0.00 | 36.26 | 2.90 |
166 | 167 | 8.889849 | AAATGTTAAGCATGTTATTGACGTAC | 57.110 | 30.769 | 0.00 | 0.00 | 37.96 | 3.67 |
167 | 168 | 9.900710 | AAAAATGTTAAGCATGTTATTGACGTA | 57.099 | 25.926 | 0.00 | 0.00 | 34.05 | 3.57 |
168 | 169 | 8.810652 | AAAAATGTTAAGCATGTTATTGACGT | 57.189 | 26.923 | 0.00 | 0.00 | 34.05 | 4.34 |
169 | 170 | 9.128107 | AGAAAAATGTTAAGCATGTTATTGACG | 57.872 | 29.630 | 0.00 | 0.00 | 34.05 | 4.35 |
229 | 230 | 9.290988 | TGTGTATGAAAAGAAGTAGGCATTAAA | 57.709 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
230 | 231 | 8.856153 | TGTGTATGAAAAGAAGTAGGCATTAA | 57.144 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
231 | 232 | 9.461312 | AATGTGTATGAAAAGAAGTAGGCATTA | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
232 | 233 | 7.944729 | ATGTGTATGAAAAGAAGTAGGCATT | 57.055 | 32.000 | 0.00 | 0.00 | 0.00 | 3.56 |
233 | 234 | 7.944729 | AATGTGTATGAAAAGAAGTAGGCAT | 57.055 | 32.000 | 0.00 | 0.00 | 0.00 | 4.40 |
234 | 235 | 7.230510 | ACAAATGTGTATGAAAAGAAGTAGGCA | 59.769 | 33.333 | 0.00 | 0.00 | 35.72 | 4.75 |
235 | 236 | 7.593825 | ACAAATGTGTATGAAAAGAAGTAGGC | 58.406 | 34.615 | 0.00 | 0.00 | 35.72 | 3.93 |
244 | 245 | 9.254133 | CCACAAATGTACAAATGTGTATGAAAA | 57.746 | 29.630 | 28.28 | 0.00 | 42.18 | 2.29 |
245 | 246 | 7.383572 | GCCACAAATGTACAAATGTGTATGAAA | 59.616 | 33.333 | 28.28 | 0.00 | 42.18 | 2.69 |
246 | 247 | 6.865726 | GCCACAAATGTACAAATGTGTATGAA | 59.134 | 34.615 | 28.28 | 0.00 | 42.18 | 2.57 |
247 | 248 | 6.015940 | TGCCACAAATGTACAAATGTGTATGA | 60.016 | 34.615 | 28.28 | 14.97 | 42.18 | 2.15 |
248 | 249 | 6.155136 | TGCCACAAATGTACAAATGTGTATG | 58.845 | 36.000 | 28.28 | 19.86 | 42.18 | 2.39 |
249 | 250 | 6.338214 | TGCCACAAATGTACAAATGTGTAT | 57.662 | 33.333 | 28.28 | 0.52 | 42.18 | 2.29 |
250 | 251 | 5.774498 | TGCCACAAATGTACAAATGTGTA | 57.226 | 34.783 | 28.28 | 19.82 | 41.14 | 2.90 |
251 | 252 | 4.662468 | TGCCACAAATGTACAAATGTGT | 57.338 | 36.364 | 28.28 | 16.32 | 41.14 | 3.72 |
252 | 253 | 6.155136 | TGTATGCCACAAATGTACAAATGTG | 58.845 | 36.000 | 25.88 | 25.88 | 42.10 | 3.21 |
253 | 254 | 6.338214 | TGTATGCCACAAATGTACAAATGT | 57.662 | 33.333 | 0.00 | 5.31 | 32.95 | 2.71 |
254 | 255 | 7.034397 | TGATGTATGCCACAAATGTACAAATG | 58.966 | 34.615 | 0.00 | 4.60 | 41.55 | 2.32 |
255 | 256 | 7.167924 | TGATGTATGCCACAAATGTACAAAT | 57.832 | 32.000 | 0.00 | 0.00 | 41.55 | 2.32 |
256 | 257 | 6.350027 | CCTGATGTATGCCACAAATGTACAAA | 60.350 | 38.462 | 0.00 | 0.00 | 41.55 | 2.83 |
257 | 258 | 5.125257 | CCTGATGTATGCCACAAATGTACAA | 59.875 | 40.000 | 0.00 | 0.00 | 41.55 | 2.41 |
258 | 259 | 4.639755 | CCTGATGTATGCCACAAATGTACA | 59.360 | 41.667 | 0.00 | 0.00 | 41.55 | 2.90 |
259 | 260 | 4.881273 | TCCTGATGTATGCCACAAATGTAC | 59.119 | 41.667 | 0.00 | 0.00 | 41.55 | 2.90 |
260 | 261 | 5.109500 | TCCTGATGTATGCCACAAATGTA | 57.891 | 39.130 | 0.00 | 0.00 | 41.55 | 2.29 |
261 | 262 | 3.966979 | TCCTGATGTATGCCACAAATGT | 58.033 | 40.909 | 0.00 | 0.00 | 41.55 | 2.71 |
262 | 263 | 4.987408 | TTCCTGATGTATGCCACAAATG | 57.013 | 40.909 | 0.00 | 0.00 | 41.55 | 2.32 |
263 | 264 | 7.844493 | AATATTCCTGATGTATGCCACAAAT | 57.156 | 32.000 | 0.00 | 0.00 | 41.55 | 2.32 |
264 | 265 | 7.658525 | AAATATTCCTGATGTATGCCACAAA | 57.341 | 32.000 | 0.00 | 0.00 | 41.55 | 2.83 |
265 | 266 | 7.658525 | AAAATATTCCTGATGTATGCCACAA | 57.341 | 32.000 | 0.00 | 0.00 | 41.55 | 3.33 |
266 | 267 | 7.658525 | AAAAATATTCCTGATGTATGCCACA | 57.341 | 32.000 | 0.00 | 0.00 | 42.69 | 4.17 |
308 | 309 | 9.228949 | TGTAAGCTTACGTGGGAATATTAAAAA | 57.771 | 29.630 | 27.07 | 4.94 | 36.45 | 1.94 |
309 | 310 | 8.789825 | TGTAAGCTTACGTGGGAATATTAAAA | 57.210 | 30.769 | 27.07 | 5.29 | 36.45 | 1.52 |
310 | 311 | 8.832521 | CATGTAAGCTTACGTGGGAATATTAAA | 58.167 | 33.333 | 35.95 | 15.61 | 43.54 | 1.52 |
311 | 312 | 8.373048 | CATGTAAGCTTACGTGGGAATATTAA | 57.627 | 34.615 | 35.95 | 15.97 | 43.54 | 1.40 |
312 | 313 | 7.956420 | CATGTAAGCTTACGTGGGAATATTA | 57.044 | 36.000 | 35.95 | 16.14 | 43.54 | 0.98 |
313 | 314 | 6.861065 | CATGTAAGCTTACGTGGGAATATT | 57.139 | 37.500 | 35.95 | 10.59 | 43.54 | 1.28 |
321 | 322 | 1.014352 | GGCCCATGTAAGCTTACGTG | 58.986 | 55.000 | 36.33 | 36.33 | 45.67 | 4.49 |
322 | 323 | 0.461339 | CGGCCCATGTAAGCTTACGT | 60.461 | 55.000 | 27.07 | 25.07 | 36.45 | 3.57 |
323 | 324 | 0.179094 | TCGGCCCATGTAAGCTTACG | 60.179 | 55.000 | 27.07 | 16.06 | 36.45 | 3.18 |
324 | 325 | 1.296727 | GTCGGCCCATGTAAGCTTAC | 58.703 | 55.000 | 26.50 | 26.50 | 0.00 | 2.34 |
325 | 326 | 0.179094 | CGTCGGCCCATGTAAGCTTA | 60.179 | 55.000 | 0.86 | 0.86 | 0.00 | 3.09 |
326 | 327 | 1.449601 | CGTCGGCCCATGTAAGCTT | 60.450 | 57.895 | 3.48 | 3.48 | 0.00 | 3.74 |
327 | 328 | 2.186903 | CGTCGGCCCATGTAAGCT | 59.813 | 61.111 | 0.00 | 0.00 | 0.00 | 3.74 |
328 | 329 | 2.895372 | CCGTCGGCCCATGTAAGC | 60.895 | 66.667 | 0.00 | 0.00 | 0.00 | 3.09 |
329 | 330 | 2.895372 | GCCGTCGGCCCATGTAAG | 60.895 | 66.667 | 26.23 | 0.00 | 44.06 | 2.34 |
348 | 349 | 3.989698 | CTAGACCAGCCGCACGGTG | 62.990 | 68.421 | 11.27 | 3.15 | 39.81 | 4.94 |
349 | 350 | 3.760035 | CTAGACCAGCCGCACGGT | 61.760 | 66.667 | 11.27 | 4.25 | 38.56 | 4.83 |
350 | 351 | 2.501223 | TTTCTAGACCAGCCGCACGG | 62.501 | 60.000 | 4.30 | 4.30 | 38.57 | 4.94 |
351 | 352 | 1.078759 | CTTTCTAGACCAGCCGCACG | 61.079 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
352 | 353 | 0.246635 | TCTTTCTAGACCAGCCGCAC | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
353 | 354 | 0.532573 | CTCTTTCTAGACCAGCCGCA | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
354 | 355 | 0.533032 | ACTCTTTCTAGACCAGCCGC | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
355 | 356 | 3.735514 | GCTAACTCTTTCTAGACCAGCCG | 60.736 | 52.174 | 0.00 | 0.00 | 0.00 | 5.52 |
356 | 357 | 3.735514 | CGCTAACTCTTTCTAGACCAGCC | 60.736 | 52.174 | 0.00 | 0.00 | 0.00 | 4.85 |
357 | 358 | 3.440228 | CGCTAACTCTTTCTAGACCAGC | 58.560 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
358 | 359 | 3.181485 | CCCGCTAACTCTTTCTAGACCAG | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 4.00 |
359 | 360 | 2.758979 | CCCGCTAACTCTTTCTAGACCA | 59.241 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
360 | 361 | 2.481622 | GCCCGCTAACTCTTTCTAGACC | 60.482 | 54.545 | 0.00 | 0.00 | 0.00 | 3.85 |
361 | 362 | 2.427812 | AGCCCGCTAACTCTTTCTAGAC | 59.572 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
362 | 363 | 2.427453 | CAGCCCGCTAACTCTTTCTAGA | 59.573 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
363 | 364 | 2.427453 | TCAGCCCGCTAACTCTTTCTAG | 59.573 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
364 | 365 | 2.427453 | CTCAGCCCGCTAACTCTTTCTA | 59.573 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
365 | 366 | 1.205893 | CTCAGCCCGCTAACTCTTTCT | 59.794 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
366 | 367 | 1.646189 | CTCAGCCCGCTAACTCTTTC | 58.354 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
367 | 368 | 0.250513 | CCTCAGCCCGCTAACTCTTT | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
368 | 369 | 1.901085 | CCTCAGCCCGCTAACTCTT | 59.099 | 57.895 | 0.00 | 0.00 | 0.00 | 2.85 |
369 | 370 | 2.726351 | GCCTCAGCCCGCTAACTCT | 61.726 | 63.158 | 0.00 | 0.00 | 0.00 | 3.24 |
370 | 371 | 2.202946 | GCCTCAGCCCGCTAACTC | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
380 | 381 | 3.124560 | GTTAGATTTAGTCGGCCTCAGC | 58.875 | 50.000 | 0.00 | 0.00 | 38.76 | 4.26 |
381 | 382 | 4.098044 | TCTGTTAGATTTAGTCGGCCTCAG | 59.902 | 45.833 | 0.00 | 0.00 | 0.00 | 3.35 |
382 | 383 | 4.021229 | TCTGTTAGATTTAGTCGGCCTCA | 58.979 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
401 | 402 | 1.001746 | TCAGGTGCTCTCTGCTTTCTG | 59.998 | 52.381 | 0.00 | 0.00 | 43.37 | 3.02 |
466 | 467 | 1.136057 | GTGATCTGCGTTCGGAAAACC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
491 | 516 | 3.297134 | TGTCCTTCAAAGACCAAAGCT | 57.703 | 42.857 | 0.00 | 0.00 | 33.09 | 3.74 |
505 | 530 | 2.306847 | ACGAAAGTTGGCAATGTCCTT | 58.693 | 42.857 | 1.92 | 0.00 | 46.40 | 3.36 |
524 | 549 | 5.485662 | AACACAAGTGCTAAAGTGAAGAC | 57.514 | 39.130 | 0.00 | 0.00 | 35.97 | 3.01 |
583 | 616 | 6.968250 | AGAGAGCAAAAACAAGATTCTGAAG | 58.032 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
596 | 629 | 7.402054 | TCACCAAATATCCTAGAGAGCAAAAA | 58.598 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
609 | 642 | 7.020010 | CGTACGAGTAGTATCACCAAATATCC | 58.980 | 42.308 | 10.44 | 0.00 | 37.69 | 2.59 |
610 | 643 | 7.800767 | TCGTACGAGTAGTATCACCAAATATC | 58.199 | 38.462 | 15.28 | 0.00 | 37.69 | 1.63 |
611 | 644 | 7.734924 | TCGTACGAGTAGTATCACCAAATAT | 57.265 | 36.000 | 15.28 | 0.00 | 37.69 | 1.28 |
612 | 645 | 7.734924 | ATCGTACGAGTAGTATCACCAAATA | 57.265 | 36.000 | 23.89 | 0.00 | 37.69 | 1.40 |
613 | 646 | 6.630444 | ATCGTACGAGTAGTATCACCAAAT | 57.370 | 37.500 | 23.89 | 0.00 | 37.69 | 2.32 |
614 | 647 | 6.441093 | AATCGTACGAGTAGTATCACCAAA | 57.559 | 37.500 | 23.89 | 0.00 | 37.69 | 3.28 |
616 | 649 | 6.093909 | TGAAAATCGTACGAGTAGTATCACCA | 59.906 | 38.462 | 23.89 | 7.86 | 37.69 | 4.17 |
617 | 650 | 6.489675 | TGAAAATCGTACGAGTAGTATCACC | 58.510 | 40.000 | 23.89 | 5.59 | 37.69 | 4.02 |
618 | 651 | 7.959718 | TTGAAAATCGTACGAGTAGTATCAC | 57.040 | 36.000 | 23.89 | 8.46 | 37.69 | 3.06 |
619 | 652 | 9.229784 | GATTTGAAAATCGTACGAGTAGTATCA | 57.770 | 33.333 | 23.89 | 18.48 | 35.44 | 2.15 |
683 | 739 | 1.067142 | GTGAACAGGTGCCGTATCTGA | 60.067 | 52.381 | 3.48 | 0.00 | 40.09 | 3.27 |
689 | 745 | 1.525995 | CAAGGTGAACAGGTGCCGT | 60.526 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
715 | 771 | 1.542187 | GGTACCACAGGCCTTCTCGT | 61.542 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
717 | 773 | 0.250513 | CAGGTACCACAGGCCTTCTC | 59.749 | 60.000 | 15.94 | 0.00 | 0.00 | 2.87 |
718 | 774 | 0.178903 | TCAGGTACCACAGGCCTTCT | 60.179 | 55.000 | 15.94 | 0.00 | 0.00 | 2.85 |
719 | 775 | 0.912486 | ATCAGGTACCACAGGCCTTC | 59.088 | 55.000 | 15.94 | 0.00 | 0.00 | 3.46 |
721 | 777 | 0.043334 | AGATCAGGTACCACAGGCCT | 59.957 | 55.000 | 15.94 | 0.00 | 0.00 | 5.19 |
722 | 778 | 0.912486 | AAGATCAGGTACCACAGGCC | 59.088 | 55.000 | 15.94 | 0.00 | 0.00 | 5.19 |
723 | 779 | 2.014068 | GCAAGATCAGGTACCACAGGC | 61.014 | 57.143 | 15.94 | 4.46 | 0.00 | 4.85 |
724 | 780 | 1.278985 | TGCAAGATCAGGTACCACAGG | 59.721 | 52.381 | 15.94 | 0.33 | 0.00 | 4.00 |
725 | 781 | 2.625737 | CTGCAAGATCAGGTACCACAG | 58.374 | 52.381 | 15.94 | 3.52 | 34.07 | 3.66 |
726 | 782 | 1.339055 | GCTGCAAGATCAGGTACCACA | 60.339 | 52.381 | 15.94 | 0.00 | 34.07 | 4.17 |
729 | 785 | 2.113860 | TTGCTGCAAGATCAGGTACC | 57.886 | 50.000 | 11.69 | 2.73 | 34.07 | 3.34 |
730 | 786 | 3.753272 | TCTTTTGCTGCAAGATCAGGTAC | 59.247 | 43.478 | 15.39 | 0.00 | 34.07 | 3.34 |
732 | 788 | 2.867624 | TCTTTTGCTGCAAGATCAGGT | 58.132 | 42.857 | 15.39 | 0.00 | 34.07 | 4.00 |
734 | 790 | 4.166523 | CACATCTTTTGCTGCAAGATCAG | 58.833 | 43.478 | 15.39 | 10.19 | 38.67 | 2.90 |
735 | 791 | 3.570975 | ACACATCTTTTGCTGCAAGATCA | 59.429 | 39.130 | 15.39 | 0.00 | 38.67 | 2.92 |
737 | 793 | 3.319972 | ACACACATCTTTTGCTGCAAGAT | 59.680 | 39.130 | 15.39 | 12.60 | 40.92 | 2.40 |
759 | 826 | 6.430308 | AGTCTTCAGTCTTGACTCGTAACATA | 59.570 | 38.462 | 0.00 | 0.00 | 36.45 | 2.29 |
795 | 862 | 6.604012 | GGCTCCTATATCGTATCGTATCATG | 58.396 | 44.000 | 0.00 | 0.00 | 0.00 | 3.07 |
796 | 863 | 5.408909 | CGGCTCCTATATCGTATCGTATCAT | 59.591 | 44.000 | 0.00 | 0.00 | 0.00 | 2.45 |
797 | 864 | 4.748600 | CGGCTCCTATATCGTATCGTATCA | 59.251 | 45.833 | 0.00 | 0.00 | 0.00 | 2.15 |
798 | 865 | 4.152045 | CCGGCTCCTATATCGTATCGTATC | 59.848 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
799 | 866 | 4.063689 | CCGGCTCCTATATCGTATCGTAT | 58.936 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
801 | 868 | 2.286872 | CCGGCTCCTATATCGTATCGT | 58.713 | 52.381 | 0.00 | 0.00 | 0.00 | 3.73 |
802 | 869 | 1.602851 | CCCGGCTCCTATATCGTATCG | 59.397 | 57.143 | 0.00 | 0.00 | 0.00 | 2.92 |
803 | 870 | 2.928334 | TCCCGGCTCCTATATCGTATC | 58.072 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
808 | 875 | 4.618920 | TTTCTTTCCCGGCTCCTATATC | 57.381 | 45.455 | 0.00 | 0.00 | 0.00 | 1.63 |
810 | 877 | 3.971305 | TCATTTCTTTCCCGGCTCCTATA | 59.029 | 43.478 | 0.00 | 0.00 | 0.00 | 1.31 |
811 | 878 | 2.777692 | TCATTTCTTTCCCGGCTCCTAT | 59.222 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
812 | 879 | 2.170607 | CTCATTTCTTTCCCGGCTCCTA | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
814 | 881 | 1.383523 | CTCATTTCTTTCCCGGCTCC | 58.616 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
815 | 882 | 0.735471 | GCTCATTTCTTTCCCGGCTC | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
817 | 884 | 1.133216 | GAAGCTCATTTCTTTCCCGGC | 59.867 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
818 | 885 | 1.745653 | GGAAGCTCATTTCTTTCCCGG | 59.254 | 52.381 | 0.00 | 0.00 | 0.00 | 5.73 |
819 | 886 | 1.398390 | CGGAAGCTCATTTCTTTCCCG | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
820 | 887 | 2.680339 | CTCGGAAGCTCATTTCTTTCCC | 59.320 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
821 | 888 | 3.600388 | TCTCGGAAGCTCATTTCTTTCC | 58.400 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
823 | 890 | 3.944015 | CCATCTCGGAAGCTCATTTCTTT | 59.056 | 43.478 | 0.00 | 0.00 | 36.56 | 2.52 |
824 | 891 | 3.539604 | CCATCTCGGAAGCTCATTTCTT | 58.460 | 45.455 | 0.00 | 0.00 | 36.56 | 2.52 |
825 | 892 | 2.744494 | GCCATCTCGGAAGCTCATTTCT | 60.744 | 50.000 | 0.00 | 0.00 | 36.56 | 2.52 |
827 | 894 | 1.673168 | GCCATCTCGGAAGCTCATTT | 58.327 | 50.000 | 0.00 | 0.00 | 36.56 | 2.32 |
828 | 895 | 0.179034 | GGCCATCTCGGAAGCTCATT | 60.179 | 55.000 | 0.00 | 0.00 | 36.56 | 2.57 |
829 | 896 | 1.053264 | AGGCCATCTCGGAAGCTCAT | 61.053 | 55.000 | 5.01 | 0.00 | 36.56 | 2.90 |
830 | 897 | 1.680522 | GAGGCCATCTCGGAAGCTCA | 61.681 | 60.000 | 5.01 | 0.00 | 36.56 | 4.26 |
831 | 898 | 1.068921 | GAGGCCATCTCGGAAGCTC | 59.931 | 63.158 | 5.01 | 0.00 | 36.56 | 4.09 |
832 | 899 | 1.267574 | TTGAGGCCATCTCGGAAGCT | 61.268 | 55.000 | 5.01 | 0.00 | 45.32 | 3.74 |
871 | 1074 | 5.168569 | GGTGCCAAGTTCCTTTAATTAAGC | 58.831 | 41.667 | 0.00 | 0.00 | 32.19 | 3.09 |
873 | 1076 | 6.732896 | TTGGTGCCAAGTTCCTTTAATTAA | 57.267 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
874 | 1077 | 6.339587 | CTTGGTGCCAAGTTCCTTTAATTA | 57.660 | 37.500 | 19.82 | 0.00 | 45.91 | 1.40 |
875 | 1078 | 5.213891 | CTTGGTGCCAAGTTCCTTTAATT | 57.786 | 39.130 | 19.82 | 0.00 | 45.91 | 1.40 |
876 | 1079 | 4.871933 | CTTGGTGCCAAGTTCCTTTAAT | 57.128 | 40.909 | 19.82 | 0.00 | 45.91 | 1.40 |
906 | 1109 | 2.092291 | GTCGGATTTGCTCGCGTGA | 61.092 | 57.895 | 13.13 | 0.00 | 0.00 | 4.35 |
912 | 1115 | 2.003301 | GTCAGGAAGTCGGATTTGCTC | 58.997 | 52.381 | 4.32 | 0.00 | 0.00 | 4.26 |
991 | 1223 | 3.703420 | CTGCCTTTTATTGATCAGCAGC | 58.297 | 45.455 | 15.30 | 5.72 | 39.70 | 5.25 |
992 | 1224 | 3.490419 | GGCTGCCTTTTATTGATCAGCAG | 60.490 | 47.826 | 20.62 | 20.62 | 46.11 | 4.24 |
993 | 1225 | 2.428171 | GGCTGCCTTTTATTGATCAGCA | 59.572 | 45.455 | 12.43 | 0.00 | 46.11 | 4.41 |
1023 | 1260 | 3.071206 | GAGCGAGGTGAGGGCAGA | 61.071 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
1050 | 1299 | 0.590230 | GAGAAGTCTCGCGTCGATGG | 60.590 | 60.000 | 5.77 | 0.00 | 34.61 | 3.51 |
1051 | 1300 | 2.848213 | GAGAAGTCTCGCGTCGATG | 58.152 | 57.895 | 5.77 | 0.00 | 34.61 | 3.84 |
1098 | 1378 | 1.451927 | GGATGCGGCTGGTGATTGA | 60.452 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
1111 | 1398 | 1.068921 | GAAGGAGGCGAGAGGATGC | 59.931 | 63.158 | 0.00 | 0.00 | 0.00 | 3.91 |
1112 | 1399 | 1.361993 | CGAAGGAGGCGAGAGGATG | 59.638 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
1113 | 1400 | 3.849064 | CGAAGGAGGCGAGAGGAT | 58.151 | 61.111 | 0.00 | 0.00 | 0.00 | 3.24 |
1126 | 1413 | 2.124695 | GCTGGGTAAGGGCCGAAG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 3.79 |
1673 | 2004 | 0.382515 | GACGGATTCGACCTCCTCTG | 59.617 | 60.000 | 0.00 | 0.04 | 40.11 | 3.35 |
1706 | 2049 | 1.221021 | CCTTAGGGCCGTCTTGGTC | 59.779 | 63.158 | 0.00 | 0.00 | 43.80 | 4.02 |
1888 | 2247 | 0.601558 | CGACGATCGGTAATGGGGAT | 59.398 | 55.000 | 20.98 | 0.00 | 36.00 | 3.85 |
1943 | 2347 | 0.175760 | TCAGTATCCGAACTGCTGCC | 59.824 | 55.000 | 0.00 | 0.00 | 45.34 | 4.85 |
1991 | 2410 | 3.429141 | CAAGTCGCTGCTGCCAGG | 61.429 | 66.667 | 10.24 | 0.00 | 39.54 | 4.45 |
2007 | 2426 | 2.583441 | CCGGAGTGCTCTGAACCCA | 61.583 | 63.158 | 9.44 | 0.00 | 38.21 | 4.51 |
2070 | 2522 | 0.461548 | CTCGCATGTTGGAGGAGCTA | 59.538 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2367 | 2861 | 2.601504 | GCTAGCAACGACGATCACGATA | 60.602 | 50.000 | 10.63 | 3.55 | 42.66 | 2.92 |
2390 | 2884 | 3.278574 | GGCATCACTTGTTATAGCACCA | 58.721 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
2452 | 6028 | 9.509855 | GTTCAACACACATACAATTTACAGAAA | 57.490 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
2506 | 6082 | 9.049523 | TCTGAAAATGAATATGATACTCTGTGC | 57.950 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
2759 | 9940 | 2.745281 | GCATCAAGCCATGTGCAAAAAT | 59.255 | 40.909 | 8.58 | 0.00 | 44.83 | 1.82 |
2825 | 10006 | 9.438228 | CTTTCATATATCAGATCATGTTGAGCT | 57.562 | 33.333 | 0.00 | 0.00 | 45.00 | 4.09 |
2857 | 10038 | 9.890085 | CACAAATTTTGCTGATTATAATCAACG | 57.110 | 29.630 | 24.61 | 16.74 | 44.20 | 4.10 |
2943 | 11230 | 7.173390 | ACCCTTTTTCGTCTTAATCTTTCTCTG | 59.827 | 37.037 | 0.00 | 0.00 | 0.00 | 3.35 |
2944 | 11231 | 7.225011 | ACCCTTTTTCGTCTTAATCTTTCTCT | 58.775 | 34.615 | 0.00 | 0.00 | 0.00 | 3.10 |
2968 | 11255 | 6.849502 | GCTTTATAATATAAAGCGGGGGAAC | 58.150 | 40.000 | 30.20 | 12.05 | 46.31 | 3.62 |
2977 | 11264 | 9.683069 | CTTTGGCCAGTGCTTTATAATATAAAG | 57.317 | 33.333 | 22.11 | 22.11 | 37.53 | 1.85 |
2978 | 11265 | 8.141268 | GCTTTGGCCAGTGCTTTATAATATAAA | 58.859 | 33.333 | 20.43 | 5.46 | 37.74 | 1.40 |
2979 | 11266 | 7.521423 | CGCTTTGGCCAGTGCTTTATAATATAA | 60.521 | 37.037 | 23.45 | 3.38 | 37.74 | 0.98 |
2980 | 11267 | 6.072728 | CGCTTTGGCCAGTGCTTTATAATATA | 60.073 | 38.462 | 23.45 | 0.00 | 37.74 | 0.86 |
2981 | 11268 | 5.278463 | CGCTTTGGCCAGTGCTTTATAATAT | 60.278 | 40.000 | 23.45 | 0.00 | 37.74 | 1.28 |
2982 | 11269 | 4.036262 | CGCTTTGGCCAGTGCTTTATAATA | 59.964 | 41.667 | 23.45 | 0.00 | 37.74 | 0.98 |
2983 | 11270 | 3.181487 | CGCTTTGGCCAGTGCTTTATAAT | 60.181 | 43.478 | 23.45 | 0.00 | 37.74 | 1.28 |
2984 | 11271 | 2.163412 | CGCTTTGGCCAGTGCTTTATAA | 59.837 | 45.455 | 23.45 | 5.66 | 37.74 | 0.98 |
2985 | 11272 | 1.742831 | CGCTTTGGCCAGTGCTTTATA | 59.257 | 47.619 | 23.45 | 0.00 | 37.74 | 0.98 |
2986 | 11273 | 0.527565 | CGCTTTGGCCAGTGCTTTAT | 59.472 | 50.000 | 23.45 | 0.00 | 37.74 | 1.40 |
2987 | 11274 | 0.536233 | TCGCTTTGGCCAGTGCTTTA | 60.536 | 50.000 | 23.45 | 10.80 | 37.74 | 1.85 |
2988 | 11275 | 1.391157 | TTCGCTTTGGCCAGTGCTTT | 61.391 | 50.000 | 23.45 | 0.00 | 37.74 | 3.51 |
2989 | 11276 | 1.827789 | TTCGCTTTGGCCAGTGCTT | 60.828 | 52.632 | 23.45 | 0.00 | 37.74 | 3.91 |
2990 | 11277 | 2.203337 | TTCGCTTTGGCCAGTGCT | 60.203 | 55.556 | 23.45 | 0.00 | 37.74 | 4.40 |
2991 | 11278 | 2.050077 | GTTCGCTTTGGCCAGTGC | 60.050 | 61.111 | 18.52 | 18.52 | 34.44 | 4.40 |
2992 | 11279 | 1.283793 | CAGTTCGCTTTGGCCAGTG | 59.716 | 57.895 | 5.11 | 1.61 | 34.44 | 3.66 |
2993 | 11280 | 1.152963 | ACAGTTCGCTTTGGCCAGT | 60.153 | 52.632 | 5.11 | 0.00 | 34.44 | 4.00 |
2994 | 11281 | 1.165907 | TGACAGTTCGCTTTGGCCAG | 61.166 | 55.000 | 5.11 | 0.00 | 34.44 | 4.85 |
2995 | 11282 | 1.153066 | TGACAGTTCGCTTTGGCCA | 60.153 | 52.632 | 0.00 | 0.00 | 34.44 | 5.36 |
2996 | 11283 | 1.282875 | GTGACAGTTCGCTTTGGCC | 59.717 | 57.895 | 0.00 | 0.00 | 34.44 | 5.36 |
2997 | 11284 | 0.040958 | CTGTGACAGTTCGCTTTGGC | 60.041 | 55.000 | 4.01 | 0.00 | 33.01 | 4.52 |
2998 | 11285 | 1.581934 | TCTGTGACAGTTCGCTTTGG | 58.418 | 50.000 | 12.93 | 0.00 | 33.01 | 3.28 |
2999 | 11286 | 3.740832 | TGTATCTGTGACAGTTCGCTTTG | 59.259 | 43.478 | 12.93 | 0.00 | 33.01 | 2.77 |
3000 | 11287 | 3.990092 | TGTATCTGTGACAGTTCGCTTT | 58.010 | 40.909 | 12.93 | 0.00 | 33.01 | 3.51 |
3001 | 11288 | 3.255888 | TCTGTATCTGTGACAGTTCGCTT | 59.744 | 43.478 | 12.93 | 0.00 | 43.95 | 4.68 |
3002 | 11289 | 2.820197 | TCTGTATCTGTGACAGTTCGCT | 59.180 | 45.455 | 12.93 | 0.00 | 43.95 | 4.93 |
3003 | 11290 | 3.217599 | TCTGTATCTGTGACAGTTCGC | 57.782 | 47.619 | 12.93 | 2.34 | 43.95 | 4.70 |
3004 | 11291 | 4.088638 | CGTTTCTGTATCTGTGACAGTTCG | 59.911 | 45.833 | 12.93 | 0.00 | 43.95 | 3.95 |
3005 | 11292 | 4.982916 | ACGTTTCTGTATCTGTGACAGTTC | 59.017 | 41.667 | 12.93 | 5.17 | 43.95 | 3.01 |
3006 | 11293 | 4.745125 | CACGTTTCTGTATCTGTGACAGTT | 59.255 | 41.667 | 12.93 | 6.95 | 43.95 | 3.16 |
3007 | 11294 | 4.202121 | ACACGTTTCTGTATCTGTGACAGT | 60.202 | 41.667 | 12.93 | 2.84 | 43.95 | 3.55 |
3008 | 11295 | 4.299155 | ACACGTTTCTGTATCTGTGACAG | 58.701 | 43.478 | 6.18 | 6.18 | 44.75 | 3.51 |
3009 | 11296 | 4.316205 | ACACGTTTCTGTATCTGTGACA | 57.684 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
3010 | 11297 | 4.150098 | GGAACACGTTTCTGTATCTGTGAC | 59.850 | 45.833 | 9.34 | 0.00 | 0.00 | 3.67 |
3011 | 11298 | 4.202172 | TGGAACACGTTTCTGTATCTGTGA | 60.202 | 41.667 | 9.34 | 0.00 | 0.00 | 3.58 |
3012 | 11299 | 4.055360 | TGGAACACGTTTCTGTATCTGTG | 58.945 | 43.478 | 9.34 | 0.00 | 0.00 | 3.66 |
3013 | 11300 | 4.330944 | TGGAACACGTTTCTGTATCTGT | 57.669 | 40.909 | 9.34 | 0.00 | 0.00 | 3.41 |
3014 | 11301 | 4.509970 | TGTTGGAACACGTTTCTGTATCTG | 59.490 | 41.667 | 9.34 | 0.00 | 39.29 | 2.90 |
3015 | 11302 | 4.699637 | TGTTGGAACACGTTTCTGTATCT | 58.300 | 39.130 | 9.34 | 0.00 | 39.29 | 1.98 |
3016 | 11303 | 5.202640 | GTTGTTGGAACACGTTTCTGTATC | 58.797 | 41.667 | 9.34 | 0.00 | 39.29 | 2.24 |
3017 | 11304 | 4.636648 | TGTTGTTGGAACACGTTTCTGTAT | 59.363 | 37.500 | 9.34 | 0.00 | 39.29 | 2.29 |
3018 | 11305 | 4.001652 | TGTTGTTGGAACACGTTTCTGTA | 58.998 | 39.130 | 9.34 | 0.00 | 39.29 | 2.74 |
3019 | 11306 | 2.814919 | TGTTGTTGGAACACGTTTCTGT | 59.185 | 40.909 | 9.34 | 0.00 | 39.29 | 3.41 |
3020 | 11307 | 3.479505 | TGTTGTTGGAACACGTTTCTG | 57.520 | 42.857 | 9.34 | 0.00 | 39.29 | 3.02 |
3021 | 11308 | 3.692101 | TGATGTTGTTGGAACACGTTTCT | 59.308 | 39.130 | 9.34 | 0.00 | 39.29 | 2.52 |
3022 | 11309 | 4.022464 | TGATGTTGTTGGAACACGTTTC | 57.978 | 40.909 | 0.00 | 0.00 | 39.29 | 2.78 |
3023 | 11310 | 4.170256 | GTTGATGTTGTTGGAACACGTTT | 58.830 | 39.130 | 0.00 | 0.00 | 39.29 | 3.60 |
3024 | 11311 | 3.191581 | TGTTGATGTTGTTGGAACACGTT | 59.808 | 39.130 | 0.00 | 0.00 | 39.29 | 3.99 |
3025 | 11312 | 2.750166 | TGTTGATGTTGTTGGAACACGT | 59.250 | 40.909 | 0.00 | 0.00 | 39.29 | 4.49 |
3026 | 11313 | 3.412981 | TGTTGATGTTGTTGGAACACG | 57.587 | 42.857 | 0.00 | 0.00 | 39.29 | 4.49 |
3027 | 11314 | 6.676950 | TCATATGTTGATGTTGTTGGAACAC | 58.323 | 36.000 | 1.90 | 0.00 | 39.29 | 3.32 |
3028 | 11315 | 6.072008 | CCTCATATGTTGATGTTGTTGGAACA | 60.072 | 38.462 | 1.90 | 0.00 | 33.32 | 3.18 |
3029 | 11316 | 6.324819 | CCTCATATGTTGATGTTGTTGGAAC | 58.675 | 40.000 | 1.90 | 0.00 | 32.72 | 3.62 |
3030 | 11317 | 5.105797 | GCCTCATATGTTGATGTTGTTGGAA | 60.106 | 40.000 | 1.90 | 0.00 | 32.72 | 3.53 |
3031 | 11318 | 4.398988 | GCCTCATATGTTGATGTTGTTGGA | 59.601 | 41.667 | 1.90 | 0.00 | 32.72 | 3.53 |
3032 | 11319 | 4.440525 | GGCCTCATATGTTGATGTTGTTGG | 60.441 | 45.833 | 1.90 | 0.00 | 32.72 | 3.77 |
3033 | 11320 | 4.158209 | TGGCCTCATATGTTGATGTTGTTG | 59.842 | 41.667 | 3.32 | 0.00 | 32.72 | 3.33 |
3034 | 11321 | 4.343231 | TGGCCTCATATGTTGATGTTGTT | 58.657 | 39.130 | 3.32 | 0.00 | 32.72 | 2.83 |
3035 | 11322 | 3.966979 | TGGCCTCATATGTTGATGTTGT | 58.033 | 40.909 | 3.32 | 0.00 | 32.72 | 3.32 |
3036 | 11323 | 5.524971 | AATGGCCTCATATGTTGATGTTG | 57.475 | 39.130 | 3.32 | 0.00 | 32.72 | 3.33 |
3037 | 11324 | 5.895534 | AGAAATGGCCTCATATGTTGATGTT | 59.104 | 36.000 | 3.32 | 0.00 | 32.72 | 2.71 |
3038 | 11325 | 5.452255 | AGAAATGGCCTCATATGTTGATGT | 58.548 | 37.500 | 3.32 | 0.00 | 32.72 | 3.06 |
3039 | 11326 | 6.938596 | TCTAGAAATGGCCTCATATGTTGATG | 59.061 | 38.462 | 3.32 | 0.00 | 32.72 | 3.07 |
3040 | 11327 | 7.083062 | TCTAGAAATGGCCTCATATGTTGAT | 57.917 | 36.000 | 3.32 | 0.00 | 32.72 | 2.57 |
3041 | 11328 | 6.464892 | CCTCTAGAAATGGCCTCATATGTTGA | 60.465 | 42.308 | 3.32 | 0.00 | 32.44 | 3.18 |
3042 | 11329 | 5.704515 | CCTCTAGAAATGGCCTCATATGTTG | 59.295 | 44.000 | 3.32 | 0.00 | 32.44 | 3.33 |
3043 | 11330 | 5.747248 | GCCTCTAGAAATGGCCTCATATGTT | 60.747 | 44.000 | 3.32 | 0.00 | 40.71 | 2.71 |
3044 | 11331 | 4.263243 | GCCTCTAGAAATGGCCTCATATGT | 60.263 | 45.833 | 3.32 | 0.00 | 40.71 | 2.29 |
3045 | 11332 | 4.260170 | GCCTCTAGAAATGGCCTCATATG | 58.740 | 47.826 | 3.32 | 0.00 | 40.71 | 1.78 |
3046 | 11333 | 4.566426 | GCCTCTAGAAATGGCCTCATAT | 57.434 | 45.455 | 3.32 | 0.00 | 40.71 | 1.78 |
3048 | 11335 | 2.947127 | GCCTCTAGAAATGGCCTCAT | 57.053 | 50.000 | 3.32 | 0.00 | 40.71 | 2.90 |
3053 | 11340 | 3.317430 | CAGAAATGGCCTCTAGAAATGGC | 59.683 | 47.826 | 12.08 | 12.08 | 45.42 | 4.40 |
3054 | 11341 | 4.785301 | TCAGAAATGGCCTCTAGAAATGG | 58.215 | 43.478 | 3.32 | 0.00 | 0.00 | 3.16 |
3055 | 11342 | 5.298777 | CCTTCAGAAATGGCCTCTAGAAATG | 59.701 | 44.000 | 3.32 | 0.00 | 0.00 | 2.32 |
3056 | 11343 | 5.192522 | TCCTTCAGAAATGGCCTCTAGAAAT | 59.807 | 40.000 | 3.32 | 0.00 | 0.00 | 2.17 |
3057 | 11344 | 4.536090 | TCCTTCAGAAATGGCCTCTAGAAA | 59.464 | 41.667 | 3.32 | 0.00 | 0.00 | 2.52 |
3058 | 11345 | 4.104086 | TCCTTCAGAAATGGCCTCTAGAA | 58.896 | 43.478 | 3.32 | 5.00 | 0.00 | 2.10 |
3059 | 11346 | 3.724478 | TCCTTCAGAAATGGCCTCTAGA | 58.276 | 45.455 | 3.32 | 0.00 | 0.00 | 2.43 |
3060 | 11347 | 4.494091 | TTCCTTCAGAAATGGCCTCTAG | 57.506 | 45.455 | 3.32 | 0.00 | 0.00 | 2.43 |
3061 | 11348 | 4.927267 | TTTCCTTCAGAAATGGCCTCTA | 57.073 | 40.909 | 3.32 | 0.00 | 39.60 | 2.43 |
3062 | 11349 | 3.814504 | TTTCCTTCAGAAATGGCCTCT | 57.185 | 42.857 | 3.32 | 0.00 | 39.60 | 3.69 |
3191 | 12070 | 9.507329 | ACACTCTGTTTGTCTATGTATTCAATT | 57.493 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
3192 | 12071 | 9.155975 | GACACTCTGTTTGTCTATGTATTCAAT | 57.844 | 33.333 | 0.00 | 0.00 | 40.30 | 2.57 |
3193 | 12072 | 7.602644 | GGACACTCTGTTTGTCTATGTATTCAA | 59.397 | 37.037 | 9.96 | 0.00 | 42.63 | 2.69 |
3194 | 12073 | 7.097192 | GGACACTCTGTTTGTCTATGTATTCA | 58.903 | 38.462 | 9.96 | 0.00 | 42.63 | 2.57 |
3195 | 12074 | 6.535508 | GGGACACTCTGTTTGTCTATGTATTC | 59.464 | 42.308 | 9.96 | 0.00 | 42.63 | 1.75 |
3296 | 12408 | 5.299949 | TCTAATGATGTGATCCCGTTCATG | 58.700 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.