Multiple sequence alignment - TraesCS5D01G197300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G197300 chr5D 100.000 3650 0 0 1 3650 300161806 300158157 0.000000e+00 6741.0
1 TraesCS5D01G197300 chr5D 86.467 2165 150 60 892 2957 300323369 300321249 0.000000e+00 2242.0
2 TraesCS5D01G197300 chr5D 86.659 1754 108 46 834 2506 300955471 300957179 0.000000e+00 1827.0
3 TraesCS5D01G197300 chr5D 86.355 1671 123 50 892 2506 300147470 300145849 0.000000e+00 1725.0
4 TraesCS5D01G197300 chr5D 86.352 1590 131 32 970 2506 299068554 299070110 0.000000e+00 1655.0
5 TraesCS5D01G197300 chr5D 88.127 1036 73 20 888 1906 299388736 299389738 0.000000e+00 1186.0
6 TraesCS5D01G197300 chr5D 86.667 765 49 28 1908 2637 299389767 299390513 0.000000e+00 798.0
7 TraesCS5D01G197300 chr5D 88.806 268 22 4 2454 2715 299073121 299073386 4.550000e-84 322.0
8 TraesCS5D01G197300 chr5D 90.336 238 17 2 2720 2957 299073590 299073821 1.270000e-79 307.0
9 TraesCS5D01G197300 chr5D 78.892 379 33 11 384 715 300319043 300318665 2.860000e-51 213.0
10 TraesCS5D01G197300 chr5D 100.000 37 0 0 2959 2995 550294910 550294946 6.540000e-08 69.4
11 TraesCS5D01G197300 chr5D 100.000 35 0 0 2960 2994 51285716 51285682 8.460000e-07 65.8
12 TraesCS5D01G197300 chr5A 86.340 1940 135 57 834 2715 398051336 398049469 0.000000e+00 1995.0
13 TraesCS5D01G197300 chr5A 87.455 1674 108 44 886 2506 397787050 397785426 0.000000e+00 1834.0
14 TraesCS5D01G197300 chr5A 86.472 1678 116 39 894 2506 396415630 396417261 0.000000e+00 1738.0
15 TraesCS5D01G197300 chr5A 82.812 448 38 23 384 795 397787575 397787131 7.450000e-97 364.0
16 TraesCS5D01G197300 chr5A 77.362 508 47 35 327 793 396494192 396494672 4.710000e-59 239.0
17 TraesCS5D01G197300 chr5A 81.579 228 28 4 2405 2620 396419445 396419670 3.750000e-40 176.0
18 TraesCS5D01G197300 chr5A 89.844 128 13 0 486 613 396472881 396473008 8.110000e-37 165.0
19 TraesCS5D01G197300 chr5A 88.189 127 15 0 487 613 396432531 396432657 6.310000e-33 152.0
20 TraesCS5D01G197300 chr5A 83.146 89 7 4 622 707 396473037 396473120 1.410000e-09 75.0
21 TraesCS5D01G197300 chr5A 88.235 51 3 3 2977 3026 139891303 139891255 1.420000e-04 58.4
22 TraesCS5D01G197300 chr5B 87.383 1712 96 51 970 2624 340609804 340611452 0.000000e+00 1855.0
23 TraesCS5D01G197300 chr5B 87.582 1667 105 36 914 2506 344241027 344239389 0.000000e+00 1838.0
24 TraesCS5D01G197300 chr5B 87.281 1659 106 40 1146 2751 340567770 340569376 0.000000e+00 1797.0
25 TraesCS5D01G197300 chr5B 87.025 1657 112 33 908 2506 343952765 343951154 0.000000e+00 1773.0
26 TraesCS5D01G197300 chr5B 86.567 1675 124 41 888 2506 340134526 340136155 0.000000e+00 1753.0
27 TraesCS5D01G197300 chr5B 86.567 1675 124 40 888 2506 340324599 340326228 0.000000e+00 1753.0
28 TraesCS5D01G197300 chr5B 89.339 1407 89 21 1146 2506 339977915 339979306 0.000000e+00 1711.0
29 TraesCS5D01G197300 chr5B 87.544 281 16 8 15 292 343959180 343958916 1.270000e-79 307.0
30 TraesCS5D01G197300 chr5B 79.310 348 34 17 479 788 340609138 340609485 3.690000e-50 209.0
31 TraesCS5D01G197300 chr5B 92.562 121 9 0 497 617 340613479 340613599 1.350000e-39 174.0
32 TraesCS5D01G197300 chr5B 90.667 75 6 1 417 490 340609052 340609126 8.340000e-17 99.0
33 TraesCS5D01G197300 chr5B 97.297 37 1 0 383 419 340573809 340573845 3.040000e-06 63.9
34 TraesCS5D01G197300 chr3A 83.787 1838 157 77 834 2618 456904923 456906672 0.000000e+00 1613.0
35 TraesCS5D01G197300 chr2D 96.034 580 18 1 3071 3650 209037119 209037693 0.000000e+00 939.0
36 TraesCS5D01G197300 chr2D 95.848 578 18 2 3074 3650 60004107 60004679 0.000000e+00 929.0
37 TraesCS5D01G197300 chr2D 94.915 590 25 1 3061 3650 147241443 147242027 0.000000e+00 918.0
38 TraesCS5D01G197300 chr2D 100.000 38 0 0 2958 2995 417517896 417517933 1.820000e-08 71.3
39 TraesCS5D01G197300 chr1D 96.181 576 17 1 3075 3650 212050019 212050589 0.000000e+00 937.0
40 TraesCS5D01G197300 chr1D 96.014 577 18 1 3074 3650 212056930 212057501 0.000000e+00 933.0
41 TraesCS5D01G197300 chr1D 95.238 42 0 2 2953 2994 31365769 31365808 8.460000e-07 65.8
42 TraesCS5D01G197300 chr1D 92.308 39 2 1 178 216 484101531 484101568 2.000000e-03 54.7
43 TraesCS5D01G197300 chr3D 96.014 577 18 1 3074 3650 11555244 11554673 0.000000e+00 933.0
44 TraesCS5D01G197300 chr7D 96.007 576 18 1 3075 3650 412340895 412341465 0.000000e+00 931.0
45 TraesCS5D01G197300 chr7D 100.000 37 0 0 2958 2994 500150588 500150624 6.540000e-08 69.4
46 TraesCS5D01G197300 chr6D 95.841 577 19 1 3074 3650 419729421 419729992 0.000000e+00 928.0
47 TraesCS5D01G197300 chr4D 95.841 577 19 1 3074 3650 434283327 434282756 0.000000e+00 928.0
48 TraesCS5D01G197300 chrUn 100.000 36 0 0 2959 2994 41158730 41158695 2.350000e-07 67.6
49 TraesCS5D01G197300 chr2A 100.000 36 0 0 2959 2994 103819191 103819226 2.350000e-07 67.6
50 TraesCS5D01G197300 chr2B 97.297 37 1 0 2961 2997 667227102 667227066 3.040000e-06 63.9
51 TraesCS5D01G197300 chr4A 93.182 44 0 3 175 216 678053303 678053261 1.090000e-05 62.1
52 TraesCS5D01G197300 chr7A 100.000 29 0 0 180 208 515169569 515169541 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G197300 chr5D 300158157 300161806 3649 True 6741.000000 6741 100.0000 1 3650 1 chr5D.!!$R3 3649
1 TraesCS5D01G197300 chr5D 300955471 300957179 1708 False 1827.000000 1827 86.6590 834 2506 1 chr5D.!!$F1 1672
2 TraesCS5D01G197300 chr5D 300145849 300147470 1621 True 1725.000000 1725 86.3550 892 2506 1 chr5D.!!$R2 1614
3 TraesCS5D01G197300 chr5D 300318665 300323369 4704 True 1227.500000 2242 82.6795 384 2957 2 chr5D.!!$R4 2573
4 TraesCS5D01G197300 chr5D 299388736 299390513 1777 False 992.000000 1186 87.3970 888 2637 2 chr5D.!!$F4 1749
5 TraesCS5D01G197300 chr5D 299068554 299073821 5267 False 761.333333 1655 88.4980 970 2957 3 chr5D.!!$F3 1987
6 TraesCS5D01G197300 chr5A 398049469 398051336 1867 True 1995.000000 1995 86.3400 834 2715 1 chr5A.!!$R2 1881
7 TraesCS5D01G197300 chr5A 397785426 397787575 2149 True 1099.000000 1834 85.1335 384 2506 2 chr5A.!!$R3 2122
8 TraesCS5D01G197300 chr5A 396415630 396419670 4040 False 957.000000 1738 84.0255 894 2620 2 chr5A.!!$F3 1726
9 TraesCS5D01G197300 chr5B 344239389 344241027 1638 True 1838.000000 1838 87.5820 914 2506 1 chr5B.!!$R3 1592
10 TraesCS5D01G197300 chr5B 340567770 340569376 1606 False 1797.000000 1797 87.2810 1146 2751 1 chr5B.!!$F4 1605
11 TraesCS5D01G197300 chr5B 343951154 343952765 1611 True 1773.000000 1773 87.0250 908 2506 1 chr5B.!!$R1 1598
12 TraesCS5D01G197300 chr5B 340134526 340136155 1629 False 1753.000000 1753 86.5670 888 2506 1 chr5B.!!$F2 1618
13 TraesCS5D01G197300 chr5B 340324599 340326228 1629 False 1753.000000 1753 86.5670 888 2506 1 chr5B.!!$F3 1618
14 TraesCS5D01G197300 chr5B 339977915 339979306 1391 False 1711.000000 1711 89.3390 1146 2506 1 chr5B.!!$F1 1360
15 TraesCS5D01G197300 chr5B 340609052 340613599 4547 False 584.250000 1855 87.4805 417 2624 4 chr5B.!!$F6 2207
16 TraesCS5D01G197300 chr3A 456904923 456906672 1749 False 1613.000000 1613 83.7870 834 2618 1 chr3A.!!$F1 1784
17 TraesCS5D01G197300 chr2D 209037119 209037693 574 False 939.000000 939 96.0340 3071 3650 1 chr2D.!!$F3 579
18 TraesCS5D01G197300 chr2D 60004107 60004679 572 False 929.000000 929 95.8480 3074 3650 1 chr2D.!!$F1 576
19 TraesCS5D01G197300 chr2D 147241443 147242027 584 False 918.000000 918 94.9150 3061 3650 1 chr2D.!!$F2 589
20 TraesCS5D01G197300 chr1D 212050019 212050589 570 False 937.000000 937 96.1810 3075 3650 1 chr1D.!!$F2 575
21 TraesCS5D01G197300 chr1D 212056930 212057501 571 False 933.000000 933 96.0140 3074 3650 1 chr1D.!!$F3 576
22 TraesCS5D01G197300 chr3D 11554673 11555244 571 True 933.000000 933 96.0140 3074 3650 1 chr3D.!!$R1 576
23 TraesCS5D01G197300 chr7D 412340895 412341465 570 False 931.000000 931 96.0070 3075 3650 1 chr7D.!!$F1 575
24 TraesCS5D01G197300 chr6D 419729421 419729992 571 False 928.000000 928 95.8410 3074 3650 1 chr6D.!!$F1 576
25 TraesCS5D01G197300 chr4D 434282756 434283327 571 True 928.000000 928 95.8410 3074 3650 1 chr4D.!!$R1 576


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.032952 TGTGCGCCTTAGACTTTCGT 59.967 50.0 4.18 0.0 0.0 3.85 F
715 771 0.105964 CTGTTCACCTTGGTGTCGGA 59.894 55.0 18.05 0.0 0.0 4.55 F
1114 1401 0.107066 TCATCAATCACCAGCCGCAT 60.107 50.0 0.00 0.0 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 2347 0.175760 TCAGTATCCGAACTGCTGCC 59.824 55.0 0.00 0.0 45.34 4.85 R
2070 2522 0.461548 CTCGCATGTTGGAGGAGCTA 59.538 55.0 0.00 0.0 0.00 3.32 R
2997 11284 0.040958 CTGTGACAGTTCGCTTTGGC 60.041 55.0 4.01 0.0 33.01 4.52 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.817809 AATGACTACTTTATTCATACACGACAT 57.182 29.630 0.00 0.00 29.29 3.06
159 160 3.552604 TTTTTCATGTGCGCCTTAGAC 57.447 42.857 4.18 0.00 0.00 2.59
160 161 2.472695 TTTCATGTGCGCCTTAGACT 57.527 45.000 4.18 0.00 0.00 3.24
161 162 2.472695 TTCATGTGCGCCTTAGACTT 57.527 45.000 4.18 0.00 0.00 3.01
162 163 2.472695 TCATGTGCGCCTTAGACTTT 57.527 45.000 4.18 0.00 0.00 2.66
163 164 2.346803 TCATGTGCGCCTTAGACTTTC 58.653 47.619 4.18 0.00 0.00 2.62
164 165 1.061131 CATGTGCGCCTTAGACTTTCG 59.939 52.381 4.18 0.00 0.00 3.46
165 166 0.032952 TGTGCGCCTTAGACTTTCGT 59.967 50.000 4.18 0.00 0.00 3.85
166 167 0.438830 GTGCGCCTTAGACTTTCGTG 59.561 55.000 4.18 0.00 0.00 4.35
167 168 0.032952 TGCGCCTTAGACTTTCGTGT 59.967 50.000 4.18 0.00 0.00 4.49
168 169 1.270274 TGCGCCTTAGACTTTCGTGTA 59.730 47.619 4.18 0.00 0.00 2.90
169 170 1.652619 GCGCCTTAGACTTTCGTGTAC 59.347 52.381 0.00 0.00 0.00 2.90
170 171 1.909532 CGCCTTAGACTTTCGTGTACG 59.090 52.381 0.00 0.00 41.45 3.67
171 172 2.666619 CGCCTTAGACTTTCGTGTACGT 60.667 50.000 4.20 0.00 40.80 3.57
172 173 2.913590 GCCTTAGACTTTCGTGTACGTC 59.086 50.000 4.20 0.00 40.80 4.34
173 174 3.610114 GCCTTAGACTTTCGTGTACGTCA 60.610 47.826 4.20 0.00 40.80 4.35
174 175 4.539870 CCTTAGACTTTCGTGTACGTCAA 58.460 43.478 4.20 0.00 40.80 3.18
175 176 5.159209 CCTTAGACTTTCGTGTACGTCAAT 58.841 41.667 4.20 0.00 40.80 2.57
176 177 6.317088 CCTTAGACTTTCGTGTACGTCAATA 58.683 40.000 4.20 0.00 40.80 1.90
177 178 6.803320 CCTTAGACTTTCGTGTACGTCAATAA 59.197 38.462 4.20 0.00 40.80 1.40
178 179 7.201299 CCTTAGACTTTCGTGTACGTCAATAAC 60.201 40.741 4.20 0.00 40.80 1.89
179 180 5.522456 AGACTTTCGTGTACGTCAATAACA 58.478 37.500 4.20 0.00 40.80 2.41
180 181 6.154445 AGACTTTCGTGTACGTCAATAACAT 58.846 36.000 4.20 0.00 40.80 2.71
181 182 6.089016 AGACTTTCGTGTACGTCAATAACATG 59.911 38.462 4.20 0.00 40.80 3.21
182 183 4.571375 TTCGTGTACGTCAATAACATGC 57.429 40.909 4.20 0.00 40.80 4.06
183 184 3.840468 TCGTGTACGTCAATAACATGCT 58.160 40.909 4.20 0.00 40.80 3.79
184 185 4.239304 TCGTGTACGTCAATAACATGCTT 58.761 39.130 4.20 0.00 40.80 3.91
185 186 5.400703 TCGTGTACGTCAATAACATGCTTA 58.599 37.500 4.20 0.00 40.80 3.09
186 187 5.862860 TCGTGTACGTCAATAACATGCTTAA 59.137 36.000 4.20 0.00 40.80 1.85
187 188 5.949787 CGTGTACGTCAATAACATGCTTAAC 59.050 40.000 0.00 0.00 34.11 2.01
188 189 6.400197 CGTGTACGTCAATAACATGCTTAACA 60.400 38.462 0.00 0.00 34.11 2.41
189 190 7.461107 GTGTACGTCAATAACATGCTTAACAT 58.539 34.615 0.00 0.00 40.66 2.71
190 191 7.960738 GTGTACGTCAATAACATGCTTAACATT 59.039 33.333 0.00 0.00 36.64 2.71
191 192 8.508062 TGTACGTCAATAACATGCTTAACATTT 58.492 29.630 0.00 0.00 36.64 2.32
192 193 9.337091 GTACGTCAATAACATGCTTAACATTTT 57.663 29.630 0.00 0.00 36.64 1.82
193 194 8.810652 ACGTCAATAACATGCTTAACATTTTT 57.189 26.923 0.00 0.00 36.64 1.94
194 195 8.911662 ACGTCAATAACATGCTTAACATTTTTC 58.088 29.630 0.00 0.00 36.64 2.29
195 196 9.128107 CGTCAATAACATGCTTAACATTTTTCT 57.872 29.630 0.00 0.00 36.64 2.52
255 256 8.856153 TTAATGCCTACTTCTTTTCATACACA 57.144 30.769 0.00 0.00 0.00 3.72
256 257 7.944729 AATGCCTACTTCTTTTCATACACAT 57.055 32.000 0.00 0.00 0.00 3.21
257 258 7.944729 ATGCCTACTTCTTTTCATACACATT 57.055 32.000 0.00 0.00 0.00 2.71
258 259 7.759489 TGCCTACTTCTTTTCATACACATTT 57.241 32.000 0.00 0.00 0.00 2.32
259 260 7.592938 TGCCTACTTCTTTTCATACACATTTG 58.407 34.615 0.00 0.00 0.00 2.32
260 261 7.230510 TGCCTACTTCTTTTCATACACATTTGT 59.769 33.333 0.00 0.00 40.02 2.83
261 262 8.726988 GCCTACTTCTTTTCATACACATTTGTA 58.273 33.333 0.00 0.00 42.53 2.41
270 271 8.809159 TTTCATACACATTTGTACATTTGTGG 57.191 30.769 28.28 17.77 41.12 4.17
271 272 6.385843 TCATACACATTTGTACATTTGTGGC 58.614 36.000 28.28 0.00 41.12 5.01
272 273 4.662468 ACACATTTGTACATTTGTGGCA 57.338 36.364 28.28 0.52 42.86 4.92
273 274 5.212532 ACACATTTGTACATTTGTGGCAT 57.787 34.783 28.28 14.51 42.86 4.40
274 275 6.338214 ACACATTTGTACATTTGTGGCATA 57.662 33.333 28.28 0.00 42.86 3.14
275 276 6.155827 ACACATTTGTACATTTGTGGCATAC 58.844 36.000 28.28 0.00 42.86 2.39
276 277 6.155136 CACATTTGTACATTTGTGGCATACA 58.845 36.000 22.07 0.00 36.64 2.29
277 278 6.812656 CACATTTGTACATTTGTGGCATACAT 59.187 34.615 22.07 0.00 39.48 2.29
278 279 7.009448 CACATTTGTACATTTGTGGCATACATC 59.991 37.037 22.07 0.00 39.48 3.06
279 280 6.581171 TTTGTACATTTGTGGCATACATCA 57.419 33.333 0.00 0.00 39.48 3.07
280 281 5.816449 TGTACATTTGTGGCATACATCAG 57.184 39.130 0.00 0.00 39.48 2.90
281 282 4.639755 TGTACATTTGTGGCATACATCAGG 59.360 41.667 0.00 0.00 39.48 3.86
282 283 3.966979 ACATTTGTGGCATACATCAGGA 58.033 40.909 0.00 0.00 39.48 3.86
283 284 4.343231 ACATTTGTGGCATACATCAGGAA 58.657 39.130 0.00 0.00 39.48 3.36
284 285 4.957954 ACATTTGTGGCATACATCAGGAAT 59.042 37.500 0.00 0.00 39.48 3.01
285 286 6.128486 ACATTTGTGGCATACATCAGGAATA 58.872 36.000 0.00 0.00 39.48 1.75
286 287 6.779049 ACATTTGTGGCATACATCAGGAATAT 59.221 34.615 0.00 0.00 39.48 1.28
287 288 7.288389 ACATTTGTGGCATACATCAGGAATATT 59.712 33.333 0.00 0.00 39.48 1.28
288 289 7.658525 TTTGTGGCATACATCAGGAATATTT 57.341 32.000 0.00 0.00 39.48 1.40
289 290 7.658525 TTGTGGCATACATCAGGAATATTTT 57.341 32.000 0.00 0.00 39.48 1.82
290 291 7.658525 TGTGGCATACATCAGGAATATTTTT 57.341 32.000 0.00 0.00 33.42 1.94
291 292 8.759481 TGTGGCATACATCAGGAATATTTTTA 57.241 30.769 0.00 0.00 33.42 1.52
292 293 9.365906 TGTGGCATACATCAGGAATATTTTTAT 57.634 29.630 0.00 0.00 33.42 1.40
334 335 8.789825 TTTTAATATTCCCACGTAAGCTTACA 57.210 30.769 30.63 14.50 45.62 2.41
335 336 8.967664 TTTAATATTCCCACGTAAGCTTACAT 57.032 30.769 30.63 17.74 45.62 2.29
336 337 6.861065 AATATTCCCACGTAAGCTTACATG 57.139 37.500 30.63 26.73 45.62 3.21
337 338 2.684001 TCCCACGTAAGCTTACATGG 57.316 50.000 34.40 34.40 44.32 3.66
339 340 1.014352 CCACGTAAGCTTACATGGGC 58.986 55.000 33.97 10.89 41.83 5.36
340 341 1.014352 CACGTAAGCTTACATGGGCC 58.986 55.000 30.63 7.55 45.62 5.80
341 342 0.461339 ACGTAAGCTTACATGGGCCG 60.461 55.000 30.63 19.53 45.62 6.13
342 343 0.179094 CGTAAGCTTACATGGGCCGA 60.179 55.000 30.63 0.00 33.28 5.54
343 344 1.296727 GTAAGCTTACATGGGCCGAC 58.703 55.000 27.87 2.43 33.88 4.79
344 345 0.179094 TAAGCTTACATGGGCCGACG 60.179 55.000 0.86 0.00 0.00 5.12
345 346 2.869503 AAGCTTACATGGGCCGACGG 62.870 60.000 10.29 10.29 0.00 4.79
365 366 4.063967 CACCGTGCGGCTGGTCTA 62.064 66.667 13.39 0.00 35.96 2.59
366 367 3.760035 ACCGTGCGGCTGGTCTAG 61.760 66.667 10.87 0.00 39.32 2.43
367 368 3.449227 CCGTGCGGCTGGTCTAGA 61.449 66.667 0.00 0.00 0.00 2.43
368 369 2.571757 CGTGCGGCTGGTCTAGAA 59.428 61.111 0.00 0.00 0.00 2.10
369 370 1.080093 CGTGCGGCTGGTCTAGAAA 60.080 57.895 0.00 0.00 0.00 2.52
370 371 1.078759 CGTGCGGCTGGTCTAGAAAG 61.079 60.000 0.00 0.00 0.00 2.62
371 372 0.246635 GTGCGGCTGGTCTAGAAAGA 59.753 55.000 0.00 0.00 0.00 2.52
372 373 0.532573 TGCGGCTGGTCTAGAAAGAG 59.467 55.000 0.00 0.00 30.45 2.85
373 374 0.533032 GCGGCTGGTCTAGAAAGAGT 59.467 55.000 7.70 0.00 30.45 3.24
374 375 1.066787 GCGGCTGGTCTAGAAAGAGTT 60.067 52.381 7.70 0.00 30.45 3.01
375 376 2.165845 GCGGCTGGTCTAGAAAGAGTTA 59.834 50.000 7.70 0.00 30.45 2.24
376 377 3.735514 GCGGCTGGTCTAGAAAGAGTTAG 60.736 52.174 7.70 0.00 30.45 2.34
377 378 3.735514 CGGCTGGTCTAGAAAGAGTTAGC 60.736 52.174 7.70 4.39 34.65 3.09
378 379 3.440228 GCTGGTCTAGAAAGAGTTAGCG 58.560 50.000 7.70 0.00 30.45 4.26
379 380 3.735514 GCTGGTCTAGAAAGAGTTAGCGG 60.736 52.174 7.70 0.00 30.45 5.52
380 381 2.758979 TGGTCTAGAAAGAGTTAGCGGG 59.241 50.000 0.00 0.00 30.45 6.13
381 382 2.481622 GGTCTAGAAAGAGTTAGCGGGC 60.482 54.545 0.00 0.00 30.45 6.13
382 383 2.427812 GTCTAGAAAGAGTTAGCGGGCT 59.572 50.000 0.00 0.00 30.45 5.19
401 402 3.124560 GCTGAGGCCGACTAAATCTAAC 58.875 50.000 0.00 0.00 0.00 2.34
466 467 2.966708 CAGTTTCTGTTTTGATCGTGCG 59.033 45.455 0.00 0.00 0.00 5.34
491 516 4.577834 TTCCGAACGCAGATCACATATA 57.422 40.909 0.00 0.00 0.00 0.86
505 530 7.496920 CAGATCACATATAGCTTTGGTCTTTGA 59.503 37.037 0.00 0.00 0.00 2.69
524 549 2.293122 TGAAGGACATTGCCAACTTTCG 59.707 45.455 0.00 0.00 0.00 3.46
556 581 3.209410 AGCACTTGTGTTTCTTCTCCTG 58.791 45.455 2.61 0.00 0.00 3.86
557 582 2.287248 GCACTTGTGTTTCTTCTCCTGC 60.287 50.000 2.61 0.00 0.00 4.85
564 589 1.230635 TTTCTTCTCCTGCAGCACGC 61.231 55.000 8.66 0.00 42.89 5.34
596 629 2.462456 TCGCTGCTTCAGAATCTTGT 57.538 45.000 0.00 0.00 32.44 3.16
609 642 7.664082 TCAGAATCTTGTTTTTGCTCTCTAG 57.336 36.000 0.00 0.00 0.00 2.43
610 643 6.652481 TCAGAATCTTGTTTTTGCTCTCTAGG 59.348 38.462 0.00 0.00 0.00 3.02
611 644 6.652481 CAGAATCTTGTTTTTGCTCTCTAGGA 59.348 38.462 0.00 0.00 0.00 2.94
612 645 7.336427 CAGAATCTTGTTTTTGCTCTCTAGGAT 59.664 37.037 0.00 0.00 0.00 3.24
613 646 8.543774 AGAATCTTGTTTTTGCTCTCTAGGATA 58.456 33.333 0.00 0.00 0.00 2.59
614 647 9.336171 GAATCTTGTTTTTGCTCTCTAGGATAT 57.664 33.333 0.00 0.00 0.00 1.63
616 649 9.692325 ATCTTGTTTTTGCTCTCTAGGATATTT 57.308 29.630 0.00 0.00 0.00 1.40
617 650 8.950210 TCTTGTTTTTGCTCTCTAGGATATTTG 58.050 33.333 0.00 0.00 0.00 2.32
618 651 7.630242 TGTTTTTGCTCTCTAGGATATTTGG 57.370 36.000 0.00 0.00 0.00 3.28
619 652 7.175104 TGTTTTTGCTCTCTAGGATATTTGGT 58.825 34.615 0.00 0.00 0.00 3.67
620 653 7.121168 TGTTTTTGCTCTCTAGGATATTTGGTG 59.879 37.037 0.00 0.00 0.00 4.17
623 656 7.855784 TTGCTCTCTAGGATATTTGGTGATA 57.144 36.000 0.00 0.00 0.00 2.15
624 657 7.233389 TGCTCTCTAGGATATTTGGTGATAC 57.767 40.000 0.00 0.00 0.00 2.24
628 661 9.747898 CTCTCTAGGATATTTGGTGATACTACT 57.252 37.037 0.00 0.00 0.00 2.57
629 662 9.742144 TCTCTAGGATATTTGGTGATACTACTC 57.258 37.037 0.00 0.00 0.00 2.59
683 739 6.157211 CCGATTTCTTAGAGTGTGTAGTGTT 58.843 40.000 0.00 0.00 0.00 3.32
689 745 8.631480 TTCTTAGAGTGTGTAGTGTTCAGATA 57.369 34.615 0.00 0.00 0.00 1.98
715 771 0.105964 CTGTTCACCTTGGTGTCGGA 59.894 55.000 18.05 0.00 0.00 4.55
717 773 1.068417 TTCACCTTGGTGTCGGACG 59.932 57.895 18.05 0.00 0.00 4.79
718 774 1.393487 TTCACCTTGGTGTCGGACGA 61.393 55.000 18.05 0.00 0.00 4.20
719 775 1.372997 CACCTTGGTGTCGGACGAG 60.373 63.158 11.39 0.00 0.00 4.18
721 777 1.111116 ACCTTGGTGTCGGACGAGAA 61.111 55.000 3.34 0.00 0.00 2.87
722 778 0.388649 CCTTGGTGTCGGACGAGAAG 60.389 60.000 3.34 5.01 0.00 2.85
723 779 0.388649 CTTGGTGTCGGACGAGAAGG 60.389 60.000 3.34 0.00 0.00 3.46
724 780 2.126031 GGTGTCGGACGAGAAGGC 60.126 66.667 3.34 0.00 0.00 4.35
732 788 2.273908 GACGAGAAGGCCTGTGGTA 58.726 57.895 5.69 0.00 0.00 3.25
734 790 1.218316 CGAGAAGGCCTGTGGTACC 59.782 63.158 5.69 4.43 0.00 3.34
735 791 1.258445 CGAGAAGGCCTGTGGTACCT 61.258 60.000 5.69 0.00 34.45 3.08
737 793 0.178903 AGAAGGCCTGTGGTACCTGA 60.179 55.000 5.69 0.00 32.92 3.86
759 826 2.689471 TCTTGCAGCAAAAGATGTGTGT 59.311 40.909 9.65 0.00 0.00 3.72
795 862 5.195001 AGACTGAAGACTGAACTCAACTC 57.805 43.478 0.00 0.00 0.00 3.01
796 863 4.646945 AGACTGAAGACTGAACTCAACTCA 59.353 41.667 0.00 0.00 0.00 3.41
797 864 5.304101 AGACTGAAGACTGAACTCAACTCAT 59.696 40.000 0.00 0.00 0.00 2.90
798 865 5.295950 ACTGAAGACTGAACTCAACTCATG 58.704 41.667 0.00 0.00 0.00 3.07
799 866 5.069648 ACTGAAGACTGAACTCAACTCATGA 59.930 40.000 0.00 0.00 36.38 3.07
801 868 7.039434 ACTGAAGACTGAACTCAACTCATGATA 60.039 37.037 0.00 0.00 37.44 2.15
802 869 7.093354 TGAAGACTGAACTCAACTCATGATAC 58.907 38.462 0.00 0.00 37.44 2.24
803 870 5.645624 AGACTGAACTCAACTCATGATACG 58.354 41.667 0.00 0.00 37.44 3.06
808 875 6.199393 TGAACTCAACTCATGATACGATACG 58.801 40.000 0.00 0.00 37.44 3.06
810 877 6.561737 ACTCAACTCATGATACGATACGAT 57.438 37.500 0.00 0.00 37.44 3.73
811 878 7.668525 ACTCAACTCATGATACGATACGATA 57.331 36.000 0.00 0.00 37.44 2.92
812 879 8.270080 ACTCAACTCATGATACGATACGATAT 57.730 34.615 0.00 0.00 37.44 1.63
814 881 9.856803 CTCAACTCATGATACGATACGATATAG 57.143 37.037 0.00 0.00 37.44 1.31
815 882 8.827677 TCAACTCATGATACGATACGATATAGG 58.172 37.037 0.00 0.00 31.50 2.57
817 884 8.596271 ACTCATGATACGATACGATATAGGAG 57.404 38.462 0.00 0.00 0.00 3.69
818 885 7.171848 ACTCATGATACGATACGATATAGGAGC 59.828 40.741 0.00 0.00 0.00 4.70
819 886 6.427242 TCATGATACGATACGATATAGGAGCC 59.573 42.308 0.00 0.00 0.00 4.70
820 887 4.748600 TGATACGATACGATATAGGAGCCG 59.251 45.833 0.00 0.00 0.00 5.52
821 888 2.286872 ACGATACGATATAGGAGCCGG 58.713 52.381 0.00 0.00 0.00 6.13
823 890 2.744166 CGATACGATATAGGAGCCGGGA 60.744 54.545 2.18 0.00 0.00 5.14
824 891 2.885135 TACGATATAGGAGCCGGGAA 57.115 50.000 2.18 0.00 0.00 3.97
825 892 2.005370 ACGATATAGGAGCCGGGAAA 57.995 50.000 2.18 0.00 0.00 3.13
827 894 2.168496 CGATATAGGAGCCGGGAAAGA 58.832 52.381 2.18 0.00 0.00 2.52
828 895 2.561419 CGATATAGGAGCCGGGAAAGAA 59.439 50.000 2.18 0.00 0.00 2.52
829 896 3.006537 CGATATAGGAGCCGGGAAAGAAA 59.993 47.826 2.18 0.00 0.00 2.52
830 897 4.322801 CGATATAGGAGCCGGGAAAGAAAT 60.323 45.833 2.18 0.00 0.00 2.17
831 898 2.710096 TAGGAGCCGGGAAAGAAATG 57.290 50.000 2.18 0.00 0.00 2.32
832 899 0.991920 AGGAGCCGGGAAAGAAATGA 59.008 50.000 2.18 0.00 0.00 2.57
858 1059 1.472376 CGAGATGGCCTCAAACTCCTC 60.472 57.143 3.32 0.00 42.06 3.71
860 1061 1.988107 AGATGGCCTCAAACTCCTCAA 59.012 47.619 3.32 0.00 0.00 3.02
871 1074 6.183360 CCTCAAACTCCTCAATCATGCTTAAG 60.183 42.308 0.00 0.00 0.00 1.85
873 1076 4.500499 ACTCCTCAATCATGCTTAAGCT 57.500 40.909 26.90 10.88 42.66 3.74
874 1077 4.853007 ACTCCTCAATCATGCTTAAGCTT 58.147 39.130 26.90 18.70 42.66 3.74
875 1078 5.994250 ACTCCTCAATCATGCTTAAGCTTA 58.006 37.500 26.90 13.26 42.66 3.09
876 1079 6.418101 ACTCCTCAATCATGCTTAAGCTTAA 58.582 36.000 26.90 17.71 42.66 1.85
878 1081 7.559170 ACTCCTCAATCATGCTTAAGCTTAATT 59.441 33.333 26.90 16.14 42.66 1.40
879 1082 8.978874 TCCTCAATCATGCTTAAGCTTAATTA 57.021 30.769 26.90 11.40 42.66 1.40
880 1083 9.407380 TCCTCAATCATGCTTAAGCTTAATTAA 57.593 29.630 26.90 5.54 42.66 1.40
906 1109 3.116079 CTTGGCACCAAGCTTGAAATT 57.884 42.857 28.05 6.04 45.38 1.82
912 1115 1.330306 CCAAGCTTGAAATTCACGCG 58.670 50.000 28.05 3.53 45.03 6.01
951 1157 0.778223 CGGATCACATCACATACGCG 59.222 55.000 3.53 3.53 0.00 6.01
991 1223 0.392193 GGCATCACACCTGACCTGAG 60.392 60.000 0.00 0.00 0.00 3.35
992 1224 1.023513 GCATCACACCTGACCTGAGC 61.024 60.000 0.00 0.00 0.00 4.26
993 1225 0.612229 CATCACACCTGACCTGAGCT 59.388 55.000 0.00 0.00 0.00 4.09
1050 1299 0.390472 CACCTCGCTCTGACCTTTCC 60.390 60.000 0.00 0.00 0.00 3.13
1051 1300 1.219393 CCTCGCTCTGACCTTTCCC 59.781 63.158 0.00 0.00 0.00 3.97
1052 1301 1.544825 CCTCGCTCTGACCTTTCCCA 61.545 60.000 0.00 0.00 0.00 4.37
1053 1302 0.539051 CTCGCTCTGACCTTTCCCAT 59.461 55.000 0.00 0.00 0.00 4.00
1054 1303 0.537188 TCGCTCTGACCTTTCCCATC 59.463 55.000 0.00 0.00 0.00 3.51
1055 1304 0.807667 CGCTCTGACCTTTCCCATCG 60.808 60.000 0.00 0.00 0.00 3.84
1056 1305 0.537188 GCTCTGACCTTTCCCATCGA 59.463 55.000 0.00 0.00 0.00 3.59
1057 1306 1.740718 GCTCTGACCTTTCCCATCGAC 60.741 57.143 0.00 0.00 0.00 4.20
1058 1307 0.530744 TCTGACCTTTCCCATCGACG 59.469 55.000 0.00 0.00 0.00 5.12
1098 1378 1.765314 CTTCCCCATCGTCTCCTTCAT 59.235 52.381 0.00 0.00 0.00 2.57
1111 1398 1.019673 CCTTCATCAATCACCAGCCG 58.980 55.000 0.00 0.00 0.00 5.52
1112 1399 0.379669 CTTCATCAATCACCAGCCGC 59.620 55.000 0.00 0.00 0.00 6.53
1113 1400 0.322366 TTCATCAATCACCAGCCGCA 60.322 50.000 0.00 0.00 0.00 5.69
1114 1401 0.107066 TCATCAATCACCAGCCGCAT 60.107 50.000 0.00 0.00 0.00 4.73
1117 1404 1.452651 CAATCACCAGCCGCATCCT 60.453 57.895 0.00 0.00 0.00 3.24
1118 1405 1.153086 AATCACCAGCCGCATCCTC 60.153 57.895 0.00 0.00 0.00 3.71
1126 1413 4.292178 CCGCATCCTCTCGCCTCC 62.292 72.222 0.00 0.00 0.00 4.30
1128 1415 2.790791 CGCATCCTCTCGCCTCCTT 61.791 63.158 0.00 0.00 0.00 3.36
1673 2004 0.507358 GGTTGACAAGTTCGCTCGAC 59.493 55.000 0.00 0.00 0.00 4.20
1888 2247 2.161078 TTGACATCTGCGGTGGCGTA 62.161 55.000 0.00 0.00 44.10 4.42
1926 2324 1.135859 CGAAGATGAAACAGCCAGTGC 60.136 52.381 0.00 0.00 37.95 4.40
1991 2410 3.911365 CGACAGCGATTCAGATACTGATC 59.089 47.826 2.30 0.00 39.00 2.92
1993 2412 3.894427 ACAGCGATTCAGATACTGATCCT 59.106 43.478 2.30 1.59 40.39 3.24
2007 2426 2.866085 GATCCTGGCAGCAGCGACTT 62.866 60.000 9.56 0.00 43.41 3.01
2070 2522 0.665835 GATGAGATCGTCGACAGCCT 59.334 55.000 17.16 8.29 0.00 4.58
2367 2861 2.869041 ACCTAGAGGAAGGGGAGATTCT 59.131 50.000 1.60 0.00 41.32 2.40
2390 2884 1.560923 GTGATCGTCGTTGCTAGCAT 58.439 50.000 20.13 0.30 0.00 3.79
2411 2905 3.278574 TGGTGCTATAACAAGTGATGCC 58.721 45.455 0.00 0.00 0.00 4.40
2452 6028 5.059833 CCTCACAGAAAACTTGTAGCTCTT 58.940 41.667 0.00 0.00 0.00 2.85
2529 9431 9.823098 GATGCACAGAGTATCATATTCATTTTC 57.177 33.333 0.00 0.00 38.97 2.29
2831 10012 9.814899 TCTTTTTCAAAATGTATTTGAGCTCAA 57.185 25.926 25.16 25.16 39.30 3.02
2943 11230 7.283127 TGCTTATCATAAAAGTTGGTCCATCTC 59.717 37.037 2.83 0.00 0.00 2.75
2944 11231 7.283127 GCTTATCATAAAAGTTGGTCCATCTCA 59.717 37.037 2.83 0.00 0.00 3.27
2957 11244 6.882656 TGGTCCATCTCAGAGAAAGATTAAG 58.117 40.000 3.63 0.00 31.05 1.85
2958 11245 6.669591 TGGTCCATCTCAGAGAAAGATTAAGA 59.330 38.462 3.63 0.00 31.05 2.10
2959 11246 6.983890 GGTCCATCTCAGAGAAAGATTAAGAC 59.016 42.308 3.63 3.33 31.05 3.01
2960 11247 6.695278 GTCCATCTCAGAGAAAGATTAAGACG 59.305 42.308 3.63 0.00 31.05 4.18
2961 11248 6.603599 TCCATCTCAGAGAAAGATTAAGACGA 59.396 38.462 3.63 0.00 31.05 4.20
2962 11249 7.122799 TCCATCTCAGAGAAAGATTAAGACGAA 59.877 37.037 3.63 0.00 31.05 3.85
2963 11250 7.761704 CCATCTCAGAGAAAGATTAAGACGAAA 59.238 37.037 3.63 0.00 31.05 3.46
2964 11251 9.144747 CATCTCAGAGAAAGATTAAGACGAAAA 57.855 33.333 3.63 0.00 31.05 2.29
2965 11252 9.712305 ATCTCAGAGAAAGATTAAGACGAAAAA 57.288 29.630 3.63 0.00 29.01 1.94
2966 11253 9.197694 TCTCAGAGAAAGATTAAGACGAAAAAG 57.802 33.333 0.00 0.00 0.00 2.27
2967 11254 8.311650 TCAGAGAAAGATTAAGACGAAAAAGG 57.688 34.615 0.00 0.00 0.00 3.11
2968 11255 7.387948 TCAGAGAAAGATTAAGACGAAAAAGGG 59.612 37.037 0.00 0.00 0.00 3.95
2969 11256 7.173390 CAGAGAAAGATTAAGACGAAAAAGGGT 59.827 37.037 0.00 0.00 0.00 4.34
2970 11257 7.720074 AGAGAAAGATTAAGACGAAAAAGGGTT 59.280 33.333 0.00 0.00 0.00 4.11
2971 11258 7.872881 AGAAAGATTAAGACGAAAAAGGGTTC 58.127 34.615 0.00 0.00 0.00 3.62
2972 11259 6.570672 AAGATTAAGACGAAAAAGGGTTCC 57.429 37.500 0.00 0.00 0.00 3.62
2973 11260 5.008331 AGATTAAGACGAAAAAGGGTTCCC 58.992 41.667 0.00 0.00 0.00 3.97
2974 11261 1.991121 AAGACGAAAAAGGGTTCCCC 58.009 50.000 4.02 0.00 45.90 4.81
2985 11272 2.670019 GGGTTCCCCCGCTTTATATT 57.330 50.000 0.00 0.00 42.41 1.28
2986 11273 3.793819 GGGTTCCCCCGCTTTATATTA 57.206 47.619 0.00 0.00 42.41 0.98
2987 11274 4.311520 GGGTTCCCCCGCTTTATATTAT 57.688 45.455 0.00 0.00 42.41 1.28
2988 11275 5.440207 GGGTTCCCCCGCTTTATATTATA 57.560 43.478 0.00 0.00 42.41 0.98
2989 11276 5.818887 GGGTTCCCCCGCTTTATATTATAA 58.181 41.667 0.00 0.00 42.41 0.98
2990 11277 6.247676 GGGTTCCCCCGCTTTATATTATAAA 58.752 40.000 8.26 8.26 42.41 1.40
2991 11278 6.376299 GGGTTCCCCCGCTTTATATTATAAAG 59.624 42.308 23.28 23.28 42.41 1.85
2992 11279 8.974094 GGGTTCCCCCGCTTTATATTATAAAGC 61.974 44.444 32.67 32.67 45.01 3.51
3003 11290 9.683069 CTTTATATTATAAAGCACTGGCCAAAG 57.317 33.333 18.54 2.77 42.56 2.77
3004 11291 3.866883 TTATAAAGCACTGGCCAAAGC 57.133 42.857 18.76 18.76 42.56 3.51
3005 11292 0.527565 ATAAAGCACTGGCCAAAGCG 59.472 50.000 19.86 5.84 42.56 4.68
3006 11293 0.536233 TAAAGCACTGGCCAAAGCGA 60.536 50.000 19.86 9.49 42.56 4.93
3007 11294 1.391157 AAAGCACTGGCCAAAGCGAA 61.391 50.000 19.86 0.00 42.56 4.70
3008 11295 2.050077 GCACTGGCCAAAGCGAAC 60.050 61.111 7.01 0.00 41.24 3.95
3009 11296 2.555547 GCACTGGCCAAAGCGAACT 61.556 57.895 7.01 0.00 41.24 3.01
3010 11297 1.283793 CACTGGCCAAAGCGAACTG 59.716 57.895 7.01 0.00 41.24 3.16
3011 11298 1.152963 ACTGGCCAAAGCGAACTGT 60.153 52.632 7.01 0.00 41.24 3.55
3012 11299 1.166531 ACTGGCCAAAGCGAACTGTC 61.167 55.000 7.01 0.00 41.24 3.51
3013 11300 1.153066 TGGCCAAAGCGAACTGTCA 60.153 52.632 0.61 0.00 41.24 3.58
3014 11301 1.282875 GGCCAAAGCGAACTGTCAC 59.717 57.895 0.00 0.00 41.24 3.67
3015 11302 1.444119 GGCCAAAGCGAACTGTCACA 61.444 55.000 0.00 0.00 41.24 3.58
3016 11303 0.040958 GCCAAAGCGAACTGTCACAG 60.041 55.000 2.22 2.22 37.52 3.66
3017 11304 1.581934 CCAAAGCGAACTGTCACAGA 58.418 50.000 13.14 0.00 35.18 3.41
3018 11305 2.146342 CCAAAGCGAACTGTCACAGAT 58.854 47.619 13.14 0.00 35.18 2.90
3019 11306 3.325870 CCAAAGCGAACTGTCACAGATA 58.674 45.455 13.14 0.00 35.18 1.98
3020 11307 3.123621 CCAAAGCGAACTGTCACAGATAC 59.876 47.826 13.14 1.24 35.18 2.24
3021 11308 3.660501 AAGCGAACTGTCACAGATACA 57.339 42.857 13.14 0.00 35.18 2.29
3023 11310 2.820197 AGCGAACTGTCACAGATACAGA 59.180 45.455 13.14 0.00 45.89 3.41
3024 11311 3.255888 AGCGAACTGTCACAGATACAGAA 59.744 43.478 13.14 0.00 45.89 3.02
3025 11312 3.987868 GCGAACTGTCACAGATACAGAAA 59.012 43.478 13.14 0.00 45.89 2.52
3026 11313 4.143305 GCGAACTGTCACAGATACAGAAAC 60.143 45.833 13.14 1.13 45.89 2.78
3027 11314 4.088638 CGAACTGTCACAGATACAGAAACG 59.911 45.833 13.14 8.13 45.89 3.60
3028 11315 4.585955 ACTGTCACAGATACAGAAACGT 57.414 40.909 13.14 0.00 45.89 3.99
3029 11316 4.299155 ACTGTCACAGATACAGAAACGTG 58.701 43.478 13.14 0.00 45.89 4.49
3030 11317 4.202121 ACTGTCACAGATACAGAAACGTGT 60.202 41.667 13.14 0.00 45.89 4.49
3031 11318 4.689071 TGTCACAGATACAGAAACGTGTT 58.311 39.130 0.00 0.00 31.46 3.32
3032 11319 4.743151 TGTCACAGATACAGAAACGTGTTC 59.257 41.667 0.00 0.00 31.46 3.18
3033 11320 4.150098 GTCACAGATACAGAAACGTGTTCC 59.850 45.833 0.00 0.00 31.46 3.62
3034 11321 4.055360 CACAGATACAGAAACGTGTTCCA 58.945 43.478 0.00 0.00 31.46 3.53
3035 11322 4.509970 CACAGATACAGAAACGTGTTCCAA 59.490 41.667 0.00 0.00 31.46 3.53
3036 11323 4.510340 ACAGATACAGAAACGTGTTCCAAC 59.490 41.667 0.00 0.00 31.46 3.77
3037 11324 4.509970 CAGATACAGAAACGTGTTCCAACA 59.490 41.667 0.00 0.00 36.38 3.33
3038 11325 5.007234 CAGATACAGAAACGTGTTCCAACAA 59.993 40.000 0.00 0.00 41.21 2.83
3039 11326 3.481112 ACAGAAACGTGTTCCAACAAC 57.519 42.857 0.00 0.00 41.21 3.32
3040 11327 2.814919 ACAGAAACGTGTTCCAACAACA 59.185 40.909 0.00 0.00 41.21 3.33
3041 11328 3.442273 ACAGAAACGTGTTCCAACAACAT 59.558 39.130 0.00 0.00 41.21 2.71
3042 11329 4.035017 CAGAAACGTGTTCCAACAACATC 58.965 43.478 0.00 0.00 41.21 3.06
3043 11330 3.692101 AGAAACGTGTTCCAACAACATCA 59.308 39.130 0.00 0.00 41.21 3.07
3044 11331 4.156922 AGAAACGTGTTCCAACAACATCAA 59.843 37.500 0.00 0.00 41.21 2.57
3045 11332 3.414549 ACGTGTTCCAACAACATCAAC 57.585 42.857 0.00 0.00 41.21 3.18
3046 11333 2.750166 ACGTGTTCCAACAACATCAACA 59.250 40.909 0.00 0.00 41.21 3.33
3047 11334 3.380004 ACGTGTTCCAACAACATCAACAT 59.620 39.130 0.00 0.00 41.21 2.71
3048 11335 4.576873 ACGTGTTCCAACAACATCAACATA 59.423 37.500 0.00 0.00 41.21 2.29
3049 11336 5.240623 ACGTGTTCCAACAACATCAACATAT 59.759 36.000 0.00 0.00 41.21 1.78
3050 11337 5.568677 CGTGTTCCAACAACATCAACATATG 59.431 40.000 0.00 0.00 41.21 1.78
3051 11338 6.567511 CGTGTTCCAACAACATCAACATATGA 60.568 38.462 10.38 0.00 41.21 2.15
3052 11339 6.803320 GTGTTCCAACAACATCAACATATGAG 59.197 38.462 10.38 1.52 40.27 2.90
3053 11340 6.072008 TGTTCCAACAACATCAACATATGAGG 60.072 38.462 10.38 0.70 38.71 3.86
3054 11341 4.398988 TCCAACAACATCAACATATGAGGC 59.601 41.667 10.38 0.00 43.58 4.70
3055 11342 4.440525 CCAACAACATCAACATATGAGGCC 60.441 45.833 10.38 0.00 43.58 5.19
3056 11343 3.966979 ACAACATCAACATATGAGGCCA 58.033 40.909 10.38 0.00 43.58 5.36
3057 11344 4.539726 ACAACATCAACATATGAGGCCAT 58.460 39.130 10.38 0.00 43.58 4.40
3058 11345 4.957954 ACAACATCAACATATGAGGCCATT 59.042 37.500 10.38 0.00 43.58 3.16
3059 11346 5.422970 ACAACATCAACATATGAGGCCATTT 59.577 36.000 10.38 0.00 43.58 2.32
3060 11347 5.779529 ACATCAACATATGAGGCCATTTC 57.220 39.130 10.38 0.00 43.58 2.17
3061 11348 5.452255 ACATCAACATATGAGGCCATTTCT 58.548 37.500 10.38 0.00 43.58 2.52
3062 11349 6.604171 ACATCAACATATGAGGCCATTTCTA 58.396 36.000 10.38 0.00 43.58 2.10
3063 11350 6.713903 ACATCAACATATGAGGCCATTTCTAG 59.286 38.462 10.38 0.00 43.58 2.43
3064 11351 6.499106 TCAACATATGAGGCCATTTCTAGA 57.501 37.500 10.38 0.00 34.31 2.43
3065 11352 6.528321 TCAACATATGAGGCCATTTCTAGAG 58.472 40.000 10.38 0.00 34.31 2.43
3066 11353 5.495926 ACATATGAGGCCATTTCTAGAGG 57.504 43.478 10.38 0.00 34.31 3.69
3067 11354 9.794828 TCAACATATGAGGCCATTTCTAGAGGC 62.795 44.444 10.38 12.08 39.39 4.70
3093 11380 5.975988 TTCTGAAGGAAATATGCCCTAGT 57.024 39.130 0.00 0.00 31.36 2.57
3191 12070 4.039488 ACCGGAAACTTAGTACATGTGTGA 59.961 41.667 9.46 0.00 0.00 3.58
3192 12071 4.992319 CCGGAAACTTAGTACATGTGTGAA 59.008 41.667 9.11 0.00 0.00 3.18
3193 12072 5.642063 CCGGAAACTTAGTACATGTGTGAAT 59.358 40.000 9.11 0.00 0.00 2.57
3194 12073 6.148811 CCGGAAACTTAGTACATGTGTGAATT 59.851 38.462 9.11 0.00 0.00 2.17
3195 12074 7.015289 CGGAAACTTAGTACATGTGTGAATTG 58.985 38.462 9.11 0.00 0.00 2.32
3359 12471 1.768870 ACCCATCCGTTAGCTTAGCAT 59.231 47.619 7.07 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.817809 ATGTCGTGTATGAATAAAGTAGTCATT 57.182 29.630 3.81 0.00 40.20 2.57
139 140 3.146066 AGTCTAAGGCGCACATGAAAAA 58.854 40.909 10.83 0.00 0.00 1.94
140 141 2.778299 AGTCTAAGGCGCACATGAAAA 58.222 42.857 10.83 0.00 0.00 2.29
141 142 2.472695 AGTCTAAGGCGCACATGAAA 57.527 45.000 10.83 0.00 0.00 2.69
142 143 2.472695 AAGTCTAAGGCGCACATGAA 57.527 45.000 10.83 0.00 0.00 2.57
143 144 2.346803 GAAAGTCTAAGGCGCACATGA 58.653 47.619 10.83 0.00 0.00 3.07
144 145 1.061131 CGAAAGTCTAAGGCGCACATG 59.939 52.381 10.83 0.00 0.00 3.21
145 146 1.337823 ACGAAAGTCTAAGGCGCACAT 60.338 47.619 10.83 0.00 44.19 3.21
146 147 0.032952 ACGAAAGTCTAAGGCGCACA 59.967 50.000 10.83 0.00 44.19 4.57
147 148 2.823628 ACGAAAGTCTAAGGCGCAC 58.176 52.632 10.83 0.00 44.19 5.34
159 160 5.013236 GCATGTTATTGACGTACACGAAAG 58.987 41.667 9.04 0.00 43.02 2.62
160 161 4.687018 AGCATGTTATTGACGTACACGAAA 59.313 37.500 9.04 3.18 43.02 3.46
161 162 4.239304 AGCATGTTATTGACGTACACGAA 58.761 39.130 9.04 0.00 43.02 3.85
162 163 3.840468 AGCATGTTATTGACGTACACGA 58.160 40.909 9.04 0.00 43.02 4.35
163 164 4.577687 AAGCATGTTATTGACGTACACG 57.422 40.909 0.00 0.00 46.33 4.49
164 165 6.823531 TGTTAAGCATGTTATTGACGTACAC 58.176 36.000 0.00 0.00 0.00 2.90
165 166 7.603963 ATGTTAAGCATGTTATTGACGTACA 57.396 32.000 0.00 0.00 36.26 2.90
166 167 8.889849 AAATGTTAAGCATGTTATTGACGTAC 57.110 30.769 0.00 0.00 37.96 3.67
167 168 9.900710 AAAAATGTTAAGCATGTTATTGACGTA 57.099 25.926 0.00 0.00 34.05 3.57
168 169 8.810652 AAAAATGTTAAGCATGTTATTGACGT 57.189 26.923 0.00 0.00 34.05 4.34
169 170 9.128107 AGAAAAATGTTAAGCATGTTATTGACG 57.872 29.630 0.00 0.00 34.05 4.35
229 230 9.290988 TGTGTATGAAAAGAAGTAGGCATTAAA 57.709 29.630 0.00 0.00 0.00 1.52
230 231 8.856153 TGTGTATGAAAAGAAGTAGGCATTAA 57.144 30.769 0.00 0.00 0.00 1.40
231 232 9.461312 AATGTGTATGAAAAGAAGTAGGCATTA 57.539 29.630 0.00 0.00 0.00 1.90
232 233 7.944729 ATGTGTATGAAAAGAAGTAGGCATT 57.055 32.000 0.00 0.00 0.00 3.56
233 234 7.944729 AATGTGTATGAAAAGAAGTAGGCAT 57.055 32.000 0.00 0.00 0.00 4.40
234 235 7.230510 ACAAATGTGTATGAAAAGAAGTAGGCA 59.769 33.333 0.00 0.00 35.72 4.75
235 236 7.593825 ACAAATGTGTATGAAAAGAAGTAGGC 58.406 34.615 0.00 0.00 35.72 3.93
244 245 9.254133 CCACAAATGTACAAATGTGTATGAAAA 57.746 29.630 28.28 0.00 42.18 2.29
245 246 7.383572 GCCACAAATGTACAAATGTGTATGAAA 59.616 33.333 28.28 0.00 42.18 2.69
246 247 6.865726 GCCACAAATGTACAAATGTGTATGAA 59.134 34.615 28.28 0.00 42.18 2.57
247 248 6.015940 TGCCACAAATGTACAAATGTGTATGA 60.016 34.615 28.28 14.97 42.18 2.15
248 249 6.155136 TGCCACAAATGTACAAATGTGTATG 58.845 36.000 28.28 19.86 42.18 2.39
249 250 6.338214 TGCCACAAATGTACAAATGTGTAT 57.662 33.333 28.28 0.52 42.18 2.29
250 251 5.774498 TGCCACAAATGTACAAATGTGTA 57.226 34.783 28.28 19.82 41.14 2.90
251 252 4.662468 TGCCACAAATGTACAAATGTGT 57.338 36.364 28.28 16.32 41.14 3.72
252 253 6.155136 TGTATGCCACAAATGTACAAATGTG 58.845 36.000 25.88 25.88 42.10 3.21
253 254 6.338214 TGTATGCCACAAATGTACAAATGT 57.662 33.333 0.00 5.31 32.95 2.71
254 255 7.034397 TGATGTATGCCACAAATGTACAAATG 58.966 34.615 0.00 4.60 41.55 2.32
255 256 7.167924 TGATGTATGCCACAAATGTACAAAT 57.832 32.000 0.00 0.00 41.55 2.32
256 257 6.350027 CCTGATGTATGCCACAAATGTACAAA 60.350 38.462 0.00 0.00 41.55 2.83
257 258 5.125257 CCTGATGTATGCCACAAATGTACAA 59.875 40.000 0.00 0.00 41.55 2.41
258 259 4.639755 CCTGATGTATGCCACAAATGTACA 59.360 41.667 0.00 0.00 41.55 2.90
259 260 4.881273 TCCTGATGTATGCCACAAATGTAC 59.119 41.667 0.00 0.00 41.55 2.90
260 261 5.109500 TCCTGATGTATGCCACAAATGTA 57.891 39.130 0.00 0.00 41.55 2.29
261 262 3.966979 TCCTGATGTATGCCACAAATGT 58.033 40.909 0.00 0.00 41.55 2.71
262 263 4.987408 TTCCTGATGTATGCCACAAATG 57.013 40.909 0.00 0.00 41.55 2.32
263 264 7.844493 AATATTCCTGATGTATGCCACAAAT 57.156 32.000 0.00 0.00 41.55 2.32
264 265 7.658525 AAATATTCCTGATGTATGCCACAAA 57.341 32.000 0.00 0.00 41.55 2.83
265 266 7.658525 AAAATATTCCTGATGTATGCCACAA 57.341 32.000 0.00 0.00 41.55 3.33
266 267 7.658525 AAAAATATTCCTGATGTATGCCACA 57.341 32.000 0.00 0.00 42.69 4.17
308 309 9.228949 TGTAAGCTTACGTGGGAATATTAAAAA 57.771 29.630 27.07 4.94 36.45 1.94
309 310 8.789825 TGTAAGCTTACGTGGGAATATTAAAA 57.210 30.769 27.07 5.29 36.45 1.52
310 311 8.832521 CATGTAAGCTTACGTGGGAATATTAAA 58.167 33.333 35.95 15.61 43.54 1.52
311 312 8.373048 CATGTAAGCTTACGTGGGAATATTAA 57.627 34.615 35.95 15.97 43.54 1.40
312 313 7.956420 CATGTAAGCTTACGTGGGAATATTA 57.044 36.000 35.95 16.14 43.54 0.98
313 314 6.861065 CATGTAAGCTTACGTGGGAATATT 57.139 37.500 35.95 10.59 43.54 1.28
321 322 1.014352 GGCCCATGTAAGCTTACGTG 58.986 55.000 36.33 36.33 45.67 4.49
322 323 0.461339 CGGCCCATGTAAGCTTACGT 60.461 55.000 27.07 25.07 36.45 3.57
323 324 0.179094 TCGGCCCATGTAAGCTTACG 60.179 55.000 27.07 16.06 36.45 3.18
324 325 1.296727 GTCGGCCCATGTAAGCTTAC 58.703 55.000 26.50 26.50 0.00 2.34
325 326 0.179094 CGTCGGCCCATGTAAGCTTA 60.179 55.000 0.86 0.86 0.00 3.09
326 327 1.449601 CGTCGGCCCATGTAAGCTT 60.450 57.895 3.48 3.48 0.00 3.74
327 328 2.186903 CGTCGGCCCATGTAAGCT 59.813 61.111 0.00 0.00 0.00 3.74
328 329 2.895372 CCGTCGGCCCATGTAAGC 60.895 66.667 0.00 0.00 0.00 3.09
329 330 2.895372 GCCGTCGGCCCATGTAAG 60.895 66.667 26.23 0.00 44.06 2.34
348 349 3.989698 CTAGACCAGCCGCACGGTG 62.990 68.421 11.27 3.15 39.81 4.94
349 350 3.760035 CTAGACCAGCCGCACGGT 61.760 66.667 11.27 4.25 38.56 4.83
350 351 2.501223 TTTCTAGACCAGCCGCACGG 62.501 60.000 4.30 4.30 38.57 4.94
351 352 1.078759 CTTTCTAGACCAGCCGCACG 61.079 60.000 0.00 0.00 0.00 5.34
352 353 0.246635 TCTTTCTAGACCAGCCGCAC 59.753 55.000 0.00 0.00 0.00 5.34
353 354 0.532573 CTCTTTCTAGACCAGCCGCA 59.467 55.000 0.00 0.00 0.00 5.69
354 355 0.533032 ACTCTTTCTAGACCAGCCGC 59.467 55.000 0.00 0.00 0.00 6.53
355 356 3.735514 GCTAACTCTTTCTAGACCAGCCG 60.736 52.174 0.00 0.00 0.00 5.52
356 357 3.735514 CGCTAACTCTTTCTAGACCAGCC 60.736 52.174 0.00 0.00 0.00 4.85
357 358 3.440228 CGCTAACTCTTTCTAGACCAGC 58.560 50.000 0.00 0.00 0.00 4.85
358 359 3.181485 CCCGCTAACTCTTTCTAGACCAG 60.181 52.174 0.00 0.00 0.00 4.00
359 360 2.758979 CCCGCTAACTCTTTCTAGACCA 59.241 50.000 0.00 0.00 0.00 4.02
360 361 2.481622 GCCCGCTAACTCTTTCTAGACC 60.482 54.545 0.00 0.00 0.00 3.85
361 362 2.427812 AGCCCGCTAACTCTTTCTAGAC 59.572 50.000 0.00 0.00 0.00 2.59
362 363 2.427453 CAGCCCGCTAACTCTTTCTAGA 59.573 50.000 0.00 0.00 0.00 2.43
363 364 2.427453 TCAGCCCGCTAACTCTTTCTAG 59.573 50.000 0.00 0.00 0.00 2.43
364 365 2.427453 CTCAGCCCGCTAACTCTTTCTA 59.573 50.000 0.00 0.00 0.00 2.10
365 366 1.205893 CTCAGCCCGCTAACTCTTTCT 59.794 52.381 0.00 0.00 0.00 2.52
366 367 1.646189 CTCAGCCCGCTAACTCTTTC 58.354 55.000 0.00 0.00 0.00 2.62
367 368 0.250513 CCTCAGCCCGCTAACTCTTT 59.749 55.000 0.00 0.00 0.00 2.52
368 369 1.901085 CCTCAGCCCGCTAACTCTT 59.099 57.895 0.00 0.00 0.00 2.85
369 370 2.726351 GCCTCAGCCCGCTAACTCT 61.726 63.158 0.00 0.00 0.00 3.24
370 371 2.202946 GCCTCAGCCCGCTAACTC 60.203 66.667 0.00 0.00 0.00 3.01
380 381 3.124560 GTTAGATTTAGTCGGCCTCAGC 58.875 50.000 0.00 0.00 38.76 4.26
381 382 4.098044 TCTGTTAGATTTAGTCGGCCTCAG 59.902 45.833 0.00 0.00 0.00 3.35
382 383 4.021229 TCTGTTAGATTTAGTCGGCCTCA 58.979 43.478 0.00 0.00 0.00 3.86
401 402 1.001746 TCAGGTGCTCTCTGCTTTCTG 59.998 52.381 0.00 0.00 43.37 3.02
466 467 1.136057 GTGATCTGCGTTCGGAAAACC 60.136 52.381 0.00 0.00 0.00 3.27
491 516 3.297134 TGTCCTTCAAAGACCAAAGCT 57.703 42.857 0.00 0.00 33.09 3.74
505 530 2.306847 ACGAAAGTTGGCAATGTCCTT 58.693 42.857 1.92 0.00 46.40 3.36
524 549 5.485662 AACACAAGTGCTAAAGTGAAGAC 57.514 39.130 0.00 0.00 35.97 3.01
583 616 6.968250 AGAGAGCAAAAACAAGATTCTGAAG 58.032 36.000 0.00 0.00 0.00 3.02
596 629 7.402054 TCACCAAATATCCTAGAGAGCAAAAA 58.598 34.615 0.00 0.00 0.00 1.94
609 642 7.020010 CGTACGAGTAGTATCACCAAATATCC 58.980 42.308 10.44 0.00 37.69 2.59
610 643 7.800767 TCGTACGAGTAGTATCACCAAATATC 58.199 38.462 15.28 0.00 37.69 1.63
611 644 7.734924 TCGTACGAGTAGTATCACCAAATAT 57.265 36.000 15.28 0.00 37.69 1.28
612 645 7.734924 ATCGTACGAGTAGTATCACCAAATA 57.265 36.000 23.89 0.00 37.69 1.40
613 646 6.630444 ATCGTACGAGTAGTATCACCAAAT 57.370 37.500 23.89 0.00 37.69 2.32
614 647 6.441093 AATCGTACGAGTAGTATCACCAAA 57.559 37.500 23.89 0.00 37.69 3.28
616 649 6.093909 TGAAAATCGTACGAGTAGTATCACCA 59.906 38.462 23.89 7.86 37.69 4.17
617 650 6.489675 TGAAAATCGTACGAGTAGTATCACC 58.510 40.000 23.89 5.59 37.69 4.02
618 651 7.959718 TTGAAAATCGTACGAGTAGTATCAC 57.040 36.000 23.89 8.46 37.69 3.06
619 652 9.229784 GATTTGAAAATCGTACGAGTAGTATCA 57.770 33.333 23.89 18.48 35.44 2.15
683 739 1.067142 GTGAACAGGTGCCGTATCTGA 60.067 52.381 3.48 0.00 40.09 3.27
689 745 1.525995 CAAGGTGAACAGGTGCCGT 60.526 57.895 0.00 0.00 0.00 5.68
715 771 1.542187 GGTACCACAGGCCTTCTCGT 61.542 60.000 0.00 0.00 0.00 4.18
717 773 0.250513 CAGGTACCACAGGCCTTCTC 59.749 60.000 15.94 0.00 0.00 2.87
718 774 0.178903 TCAGGTACCACAGGCCTTCT 60.179 55.000 15.94 0.00 0.00 2.85
719 775 0.912486 ATCAGGTACCACAGGCCTTC 59.088 55.000 15.94 0.00 0.00 3.46
721 777 0.043334 AGATCAGGTACCACAGGCCT 59.957 55.000 15.94 0.00 0.00 5.19
722 778 0.912486 AAGATCAGGTACCACAGGCC 59.088 55.000 15.94 0.00 0.00 5.19
723 779 2.014068 GCAAGATCAGGTACCACAGGC 61.014 57.143 15.94 4.46 0.00 4.85
724 780 1.278985 TGCAAGATCAGGTACCACAGG 59.721 52.381 15.94 0.33 0.00 4.00
725 781 2.625737 CTGCAAGATCAGGTACCACAG 58.374 52.381 15.94 3.52 34.07 3.66
726 782 1.339055 GCTGCAAGATCAGGTACCACA 60.339 52.381 15.94 0.00 34.07 4.17
729 785 2.113860 TTGCTGCAAGATCAGGTACC 57.886 50.000 11.69 2.73 34.07 3.34
730 786 3.753272 TCTTTTGCTGCAAGATCAGGTAC 59.247 43.478 15.39 0.00 34.07 3.34
732 788 2.867624 TCTTTTGCTGCAAGATCAGGT 58.132 42.857 15.39 0.00 34.07 4.00
734 790 4.166523 CACATCTTTTGCTGCAAGATCAG 58.833 43.478 15.39 10.19 38.67 2.90
735 791 3.570975 ACACATCTTTTGCTGCAAGATCA 59.429 39.130 15.39 0.00 38.67 2.92
737 793 3.319972 ACACACATCTTTTGCTGCAAGAT 59.680 39.130 15.39 12.60 40.92 2.40
759 826 6.430308 AGTCTTCAGTCTTGACTCGTAACATA 59.570 38.462 0.00 0.00 36.45 2.29
795 862 6.604012 GGCTCCTATATCGTATCGTATCATG 58.396 44.000 0.00 0.00 0.00 3.07
796 863 5.408909 CGGCTCCTATATCGTATCGTATCAT 59.591 44.000 0.00 0.00 0.00 2.45
797 864 4.748600 CGGCTCCTATATCGTATCGTATCA 59.251 45.833 0.00 0.00 0.00 2.15
798 865 4.152045 CCGGCTCCTATATCGTATCGTATC 59.848 50.000 0.00 0.00 0.00 2.24
799 866 4.063689 CCGGCTCCTATATCGTATCGTAT 58.936 47.826 0.00 0.00 0.00 3.06
801 868 2.286872 CCGGCTCCTATATCGTATCGT 58.713 52.381 0.00 0.00 0.00 3.73
802 869 1.602851 CCCGGCTCCTATATCGTATCG 59.397 57.143 0.00 0.00 0.00 2.92
803 870 2.928334 TCCCGGCTCCTATATCGTATC 58.072 52.381 0.00 0.00 0.00 2.24
808 875 4.618920 TTTCTTTCCCGGCTCCTATATC 57.381 45.455 0.00 0.00 0.00 1.63
810 877 3.971305 TCATTTCTTTCCCGGCTCCTATA 59.029 43.478 0.00 0.00 0.00 1.31
811 878 2.777692 TCATTTCTTTCCCGGCTCCTAT 59.222 45.455 0.00 0.00 0.00 2.57
812 879 2.170607 CTCATTTCTTTCCCGGCTCCTA 59.829 50.000 0.00 0.00 0.00 2.94
814 881 1.383523 CTCATTTCTTTCCCGGCTCC 58.616 55.000 0.00 0.00 0.00 4.70
815 882 0.735471 GCTCATTTCTTTCCCGGCTC 59.265 55.000 0.00 0.00 0.00 4.70
817 884 1.133216 GAAGCTCATTTCTTTCCCGGC 59.867 52.381 0.00 0.00 0.00 6.13
818 885 1.745653 GGAAGCTCATTTCTTTCCCGG 59.254 52.381 0.00 0.00 0.00 5.73
819 886 1.398390 CGGAAGCTCATTTCTTTCCCG 59.602 52.381 0.00 0.00 0.00 5.14
820 887 2.680339 CTCGGAAGCTCATTTCTTTCCC 59.320 50.000 0.00 0.00 0.00 3.97
821 888 3.600388 TCTCGGAAGCTCATTTCTTTCC 58.400 45.455 0.00 0.00 0.00 3.13
823 890 3.944015 CCATCTCGGAAGCTCATTTCTTT 59.056 43.478 0.00 0.00 36.56 2.52
824 891 3.539604 CCATCTCGGAAGCTCATTTCTT 58.460 45.455 0.00 0.00 36.56 2.52
825 892 2.744494 GCCATCTCGGAAGCTCATTTCT 60.744 50.000 0.00 0.00 36.56 2.52
827 894 1.673168 GCCATCTCGGAAGCTCATTT 58.327 50.000 0.00 0.00 36.56 2.32
828 895 0.179034 GGCCATCTCGGAAGCTCATT 60.179 55.000 0.00 0.00 36.56 2.57
829 896 1.053264 AGGCCATCTCGGAAGCTCAT 61.053 55.000 5.01 0.00 36.56 2.90
830 897 1.680522 GAGGCCATCTCGGAAGCTCA 61.681 60.000 5.01 0.00 36.56 4.26
831 898 1.068921 GAGGCCATCTCGGAAGCTC 59.931 63.158 5.01 0.00 36.56 4.09
832 899 1.267574 TTGAGGCCATCTCGGAAGCT 61.268 55.000 5.01 0.00 45.32 3.74
871 1074 5.168569 GGTGCCAAGTTCCTTTAATTAAGC 58.831 41.667 0.00 0.00 32.19 3.09
873 1076 6.732896 TTGGTGCCAAGTTCCTTTAATTAA 57.267 33.333 0.00 0.00 0.00 1.40
874 1077 6.339587 CTTGGTGCCAAGTTCCTTTAATTA 57.660 37.500 19.82 0.00 45.91 1.40
875 1078 5.213891 CTTGGTGCCAAGTTCCTTTAATT 57.786 39.130 19.82 0.00 45.91 1.40
876 1079 4.871933 CTTGGTGCCAAGTTCCTTTAAT 57.128 40.909 19.82 0.00 45.91 1.40
906 1109 2.092291 GTCGGATTTGCTCGCGTGA 61.092 57.895 13.13 0.00 0.00 4.35
912 1115 2.003301 GTCAGGAAGTCGGATTTGCTC 58.997 52.381 4.32 0.00 0.00 4.26
991 1223 3.703420 CTGCCTTTTATTGATCAGCAGC 58.297 45.455 15.30 5.72 39.70 5.25
992 1224 3.490419 GGCTGCCTTTTATTGATCAGCAG 60.490 47.826 20.62 20.62 46.11 4.24
993 1225 2.428171 GGCTGCCTTTTATTGATCAGCA 59.572 45.455 12.43 0.00 46.11 4.41
1023 1260 3.071206 GAGCGAGGTGAGGGCAGA 61.071 66.667 0.00 0.00 0.00 4.26
1050 1299 0.590230 GAGAAGTCTCGCGTCGATGG 60.590 60.000 5.77 0.00 34.61 3.51
1051 1300 2.848213 GAGAAGTCTCGCGTCGATG 58.152 57.895 5.77 0.00 34.61 3.84
1098 1378 1.451927 GGATGCGGCTGGTGATTGA 60.452 57.895 0.00 0.00 0.00 2.57
1111 1398 1.068921 GAAGGAGGCGAGAGGATGC 59.931 63.158 0.00 0.00 0.00 3.91
1112 1399 1.361993 CGAAGGAGGCGAGAGGATG 59.638 63.158 0.00 0.00 0.00 3.51
1113 1400 3.849064 CGAAGGAGGCGAGAGGAT 58.151 61.111 0.00 0.00 0.00 3.24
1126 1413 2.124695 GCTGGGTAAGGGCCGAAG 60.125 66.667 0.00 0.00 0.00 3.79
1673 2004 0.382515 GACGGATTCGACCTCCTCTG 59.617 60.000 0.00 0.04 40.11 3.35
1706 2049 1.221021 CCTTAGGGCCGTCTTGGTC 59.779 63.158 0.00 0.00 43.80 4.02
1888 2247 0.601558 CGACGATCGGTAATGGGGAT 59.398 55.000 20.98 0.00 36.00 3.85
1943 2347 0.175760 TCAGTATCCGAACTGCTGCC 59.824 55.000 0.00 0.00 45.34 4.85
1991 2410 3.429141 CAAGTCGCTGCTGCCAGG 61.429 66.667 10.24 0.00 39.54 4.45
2007 2426 2.583441 CCGGAGTGCTCTGAACCCA 61.583 63.158 9.44 0.00 38.21 4.51
2070 2522 0.461548 CTCGCATGTTGGAGGAGCTA 59.538 55.000 0.00 0.00 0.00 3.32
2367 2861 2.601504 GCTAGCAACGACGATCACGATA 60.602 50.000 10.63 3.55 42.66 2.92
2390 2884 3.278574 GGCATCACTTGTTATAGCACCA 58.721 45.455 0.00 0.00 0.00 4.17
2452 6028 9.509855 GTTCAACACACATACAATTTACAGAAA 57.490 29.630 0.00 0.00 0.00 2.52
2506 6082 9.049523 TCTGAAAATGAATATGATACTCTGTGC 57.950 33.333 0.00 0.00 0.00 4.57
2759 9940 2.745281 GCATCAAGCCATGTGCAAAAAT 59.255 40.909 8.58 0.00 44.83 1.82
2825 10006 9.438228 CTTTCATATATCAGATCATGTTGAGCT 57.562 33.333 0.00 0.00 45.00 4.09
2857 10038 9.890085 CACAAATTTTGCTGATTATAATCAACG 57.110 29.630 24.61 16.74 44.20 4.10
2943 11230 7.173390 ACCCTTTTTCGTCTTAATCTTTCTCTG 59.827 37.037 0.00 0.00 0.00 3.35
2944 11231 7.225011 ACCCTTTTTCGTCTTAATCTTTCTCT 58.775 34.615 0.00 0.00 0.00 3.10
2968 11255 6.849502 GCTTTATAATATAAAGCGGGGGAAC 58.150 40.000 30.20 12.05 46.31 3.62
2977 11264 9.683069 CTTTGGCCAGTGCTTTATAATATAAAG 57.317 33.333 22.11 22.11 37.53 1.85
2978 11265 8.141268 GCTTTGGCCAGTGCTTTATAATATAAA 58.859 33.333 20.43 5.46 37.74 1.40
2979 11266 7.521423 CGCTTTGGCCAGTGCTTTATAATATAA 60.521 37.037 23.45 3.38 37.74 0.98
2980 11267 6.072728 CGCTTTGGCCAGTGCTTTATAATATA 60.073 38.462 23.45 0.00 37.74 0.86
2981 11268 5.278463 CGCTTTGGCCAGTGCTTTATAATAT 60.278 40.000 23.45 0.00 37.74 1.28
2982 11269 4.036262 CGCTTTGGCCAGTGCTTTATAATA 59.964 41.667 23.45 0.00 37.74 0.98
2983 11270 3.181487 CGCTTTGGCCAGTGCTTTATAAT 60.181 43.478 23.45 0.00 37.74 1.28
2984 11271 2.163412 CGCTTTGGCCAGTGCTTTATAA 59.837 45.455 23.45 5.66 37.74 0.98
2985 11272 1.742831 CGCTTTGGCCAGTGCTTTATA 59.257 47.619 23.45 0.00 37.74 0.98
2986 11273 0.527565 CGCTTTGGCCAGTGCTTTAT 59.472 50.000 23.45 0.00 37.74 1.40
2987 11274 0.536233 TCGCTTTGGCCAGTGCTTTA 60.536 50.000 23.45 10.80 37.74 1.85
2988 11275 1.391157 TTCGCTTTGGCCAGTGCTTT 61.391 50.000 23.45 0.00 37.74 3.51
2989 11276 1.827789 TTCGCTTTGGCCAGTGCTT 60.828 52.632 23.45 0.00 37.74 3.91
2990 11277 2.203337 TTCGCTTTGGCCAGTGCT 60.203 55.556 23.45 0.00 37.74 4.40
2991 11278 2.050077 GTTCGCTTTGGCCAGTGC 60.050 61.111 18.52 18.52 34.44 4.40
2992 11279 1.283793 CAGTTCGCTTTGGCCAGTG 59.716 57.895 5.11 1.61 34.44 3.66
2993 11280 1.152963 ACAGTTCGCTTTGGCCAGT 60.153 52.632 5.11 0.00 34.44 4.00
2994 11281 1.165907 TGACAGTTCGCTTTGGCCAG 61.166 55.000 5.11 0.00 34.44 4.85
2995 11282 1.153066 TGACAGTTCGCTTTGGCCA 60.153 52.632 0.00 0.00 34.44 5.36
2996 11283 1.282875 GTGACAGTTCGCTTTGGCC 59.717 57.895 0.00 0.00 34.44 5.36
2997 11284 0.040958 CTGTGACAGTTCGCTTTGGC 60.041 55.000 4.01 0.00 33.01 4.52
2998 11285 1.581934 TCTGTGACAGTTCGCTTTGG 58.418 50.000 12.93 0.00 33.01 3.28
2999 11286 3.740832 TGTATCTGTGACAGTTCGCTTTG 59.259 43.478 12.93 0.00 33.01 2.77
3000 11287 3.990092 TGTATCTGTGACAGTTCGCTTT 58.010 40.909 12.93 0.00 33.01 3.51
3001 11288 3.255888 TCTGTATCTGTGACAGTTCGCTT 59.744 43.478 12.93 0.00 43.95 4.68
3002 11289 2.820197 TCTGTATCTGTGACAGTTCGCT 59.180 45.455 12.93 0.00 43.95 4.93
3003 11290 3.217599 TCTGTATCTGTGACAGTTCGC 57.782 47.619 12.93 2.34 43.95 4.70
3004 11291 4.088638 CGTTTCTGTATCTGTGACAGTTCG 59.911 45.833 12.93 0.00 43.95 3.95
3005 11292 4.982916 ACGTTTCTGTATCTGTGACAGTTC 59.017 41.667 12.93 5.17 43.95 3.01
3006 11293 4.745125 CACGTTTCTGTATCTGTGACAGTT 59.255 41.667 12.93 6.95 43.95 3.16
3007 11294 4.202121 ACACGTTTCTGTATCTGTGACAGT 60.202 41.667 12.93 2.84 43.95 3.55
3008 11295 4.299155 ACACGTTTCTGTATCTGTGACAG 58.701 43.478 6.18 6.18 44.75 3.51
3009 11296 4.316205 ACACGTTTCTGTATCTGTGACA 57.684 40.909 0.00 0.00 0.00 3.58
3010 11297 4.150098 GGAACACGTTTCTGTATCTGTGAC 59.850 45.833 9.34 0.00 0.00 3.67
3011 11298 4.202172 TGGAACACGTTTCTGTATCTGTGA 60.202 41.667 9.34 0.00 0.00 3.58
3012 11299 4.055360 TGGAACACGTTTCTGTATCTGTG 58.945 43.478 9.34 0.00 0.00 3.66
3013 11300 4.330944 TGGAACACGTTTCTGTATCTGT 57.669 40.909 9.34 0.00 0.00 3.41
3014 11301 4.509970 TGTTGGAACACGTTTCTGTATCTG 59.490 41.667 9.34 0.00 39.29 2.90
3015 11302 4.699637 TGTTGGAACACGTTTCTGTATCT 58.300 39.130 9.34 0.00 39.29 1.98
3016 11303 5.202640 GTTGTTGGAACACGTTTCTGTATC 58.797 41.667 9.34 0.00 39.29 2.24
3017 11304 4.636648 TGTTGTTGGAACACGTTTCTGTAT 59.363 37.500 9.34 0.00 39.29 2.29
3018 11305 4.001652 TGTTGTTGGAACACGTTTCTGTA 58.998 39.130 9.34 0.00 39.29 2.74
3019 11306 2.814919 TGTTGTTGGAACACGTTTCTGT 59.185 40.909 9.34 0.00 39.29 3.41
3020 11307 3.479505 TGTTGTTGGAACACGTTTCTG 57.520 42.857 9.34 0.00 39.29 3.02
3021 11308 3.692101 TGATGTTGTTGGAACACGTTTCT 59.308 39.130 9.34 0.00 39.29 2.52
3022 11309 4.022464 TGATGTTGTTGGAACACGTTTC 57.978 40.909 0.00 0.00 39.29 2.78
3023 11310 4.170256 GTTGATGTTGTTGGAACACGTTT 58.830 39.130 0.00 0.00 39.29 3.60
3024 11311 3.191581 TGTTGATGTTGTTGGAACACGTT 59.808 39.130 0.00 0.00 39.29 3.99
3025 11312 2.750166 TGTTGATGTTGTTGGAACACGT 59.250 40.909 0.00 0.00 39.29 4.49
3026 11313 3.412981 TGTTGATGTTGTTGGAACACG 57.587 42.857 0.00 0.00 39.29 4.49
3027 11314 6.676950 TCATATGTTGATGTTGTTGGAACAC 58.323 36.000 1.90 0.00 39.29 3.32
3028 11315 6.072008 CCTCATATGTTGATGTTGTTGGAACA 60.072 38.462 1.90 0.00 33.32 3.18
3029 11316 6.324819 CCTCATATGTTGATGTTGTTGGAAC 58.675 40.000 1.90 0.00 32.72 3.62
3030 11317 5.105797 GCCTCATATGTTGATGTTGTTGGAA 60.106 40.000 1.90 0.00 32.72 3.53
3031 11318 4.398988 GCCTCATATGTTGATGTTGTTGGA 59.601 41.667 1.90 0.00 32.72 3.53
3032 11319 4.440525 GGCCTCATATGTTGATGTTGTTGG 60.441 45.833 1.90 0.00 32.72 3.77
3033 11320 4.158209 TGGCCTCATATGTTGATGTTGTTG 59.842 41.667 3.32 0.00 32.72 3.33
3034 11321 4.343231 TGGCCTCATATGTTGATGTTGTT 58.657 39.130 3.32 0.00 32.72 2.83
3035 11322 3.966979 TGGCCTCATATGTTGATGTTGT 58.033 40.909 3.32 0.00 32.72 3.32
3036 11323 5.524971 AATGGCCTCATATGTTGATGTTG 57.475 39.130 3.32 0.00 32.72 3.33
3037 11324 5.895534 AGAAATGGCCTCATATGTTGATGTT 59.104 36.000 3.32 0.00 32.72 2.71
3038 11325 5.452255 AGAAATGGCCTCATATGTTGATGT 58.548 37.500 3.32 0.00 32.72 3.06
3039 11326 6.938596 TCTAGAAATGGCCTCATATGTTGATG 59.061 38.462 3.32 0.00 32.72 3.07
3040 11327 7.083062 TCTAGAAATGGCCTCATATGTTGAT 57.917 36.000 3.32 0.00 32.72 2.57
3041 11328 6.464892 CCTCTAGAAATGGCCTCATATGTTGA 60.465 42.308 3.32 0.00 32.44 3.18
3042 11329 5.704515 CCTCTAGAAATGGCCTCATATGTTG 59.295 44.000 3.32 0.00 32.44 3.33
3043 11330 5.747248 GCCTCTAGAAATGGCCTCATATGTT 60.747 44.000 3.32 0.00 40.71 2.71
3044 11331 4.263243 GCCTCTAGAAATGGCCTCATATGT 60.263 45.833 3.32 0.00 40.71 2.29
3045 11332 4.260170 GCCTCTAGAAATGGCCTCATATG 58.740 47.826 3.32 0.00 40.71 1.78
3046 11333 4.566426 GCCTCTAGAAATGGCCTCATAT 57.434 45.455 3.32 0.00 40.71 1.78
3048 11335 2.947127 GCCTCTAGAAATGGCCTCAT 57.053 50.000 3.32 0.00 40.71 2.90
3053 11340 3.317430 CAGAAATGGCCTCTAGAAATGGC 59.683 47.826 12.08 12.08 45.42 4.40
3054 11341 4.785301 TCAGAAATGGCCTCTAGAAATGG 58.215 43.478 3.32 0.00 0.00 3.16
3055 11342 5.298777 CCTTCAGAAATGGCCTCTAGAAATG 59.701 44.000 3.32 0.00 0.00 2.32
3056 11343 5.192522 TCCTTCAGAAATGGCCTCTAGAAAT 59.807 40.000 3.32 0.00 0.00 2.17
3057 11344 4.536090 TCCTTCAGAAATGGCCTCTAGAAA 59.464 41.667 3.32 0.00 0.00 2.52
3058 11345 4.104086 TCCTTCAGAAATGGCCTCTAGAA 58.896 43.478 3.32 5.00 0.00 2.10
3059 11346 3.724478 TCCTTCAGAAATGGCCTCTAGA 58.276 45.455 3.32 0.00 0.00 2.43
3060 11347 4.494091 TTCCTTCAGAAATGGCCTCTAG 57.506 45.455 3.32 0.00 0.00 2.43
3061 11348 4.927267 TTTCCTTCAGAAATGGCCTCTA 57.073 40.909 3.32 0.00 39.60 2.43
3062 11349 3.814504 TTTCCTTCAGAAATGGCCTCT 57.185 42.857 3.32 0.00 39.60 3.69
3191 12070 9.507329 ACACTCTGTTTGTCTATGTATTCAATT 57.493 29.630 0.00 0.00 0.00 2.32
3192 12071 9.155975 GACACTCTGTTTGTCTATGTATTCAAT 57.844 33.333 0.00 0.00 40.30 2.57
3193 12072 7.602644 GGACACTCTGTTTGTCTATGTATTCAA 59.397 37.037 9.96 0.00 42.63 2.69
3194 12073 7.097192 GGACACTCTGTTTGTCTATGTATTCA 58.903 38.462 9.96 0.00 42.63 2.57
3195 12074 6.535508 GGGACACTCTGTTTGTCTATGTATTC 59.464 42.308 9.96 0.00 42.63 1.75
3296 12408 5.299949 TCTAATGATGTGATCCCGTTCATG 58.700 41.667 0.00 0.00 0.00 3.07



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.