Multiple sequence alignment - TraesCS5D01G196300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G196300 chr5D 100.000 3616 0 0 1 3616 299831604 299835219 0.000000e+00 6678.0
1 TraesCS5D01G196300 chr5D 100.000 411 0 0 3957 4367 299835560 299835970 0.000000e+00 760.0
2 TraesCS5D01G196300 chr5D 84.894 331 47 1 1584 1914 493121503 493121830 9.050000e-87 331.0
3 TraesCS5D01G196300 chr5D 80.251 319 41 15 1156 1472 493120743 493121041 2.040000e-53 220.0
4 TraesCS5D01G196300 chr5B 94.072 1029 40 8 401 1421 341062094 341063109 0.000000e+00 1543.0
5 TraesCS5D01G196300 chr5B 90.637 1004 56 21 2559 3535 341067718 341068710 0.000000e+00 1299.0
6 TraesCS5D01G196300 chr5B 91.603 524 32 6 1578 2101 341067143 341067654 0.000000e+00 713.0
7 TraesCS5D01G196300 chr5B 91.408 419 21 9 1 408 341061646 341062060 1.060000e-155 560.0
8 TraesCS5D01G196300 chr5B 89.781 411 24 5 3957 4367 341069203 341069595 1.080000e-140 510.0
9 TraesCS5D01G196300 chr5B 91.349 289 18 3 3082 3368 608344258 608344541 5.300000e-104 388.0
10 TraesCS5D01G196300 chr5B 79.240 342 45 19 1136 1472 608199926 608200246 9.510000e-52 215.0
11 TraesCS5D01G196300 chr5B 89.262 149 13 2 1156 1303 608340805 608340951 2.680000e-42 183.0
12 TraesCS5D01G196300 chr5B 81.714 175 9 11 1414 1566 341066795 341066968 1.650000e-24 124.0
13 TraesCS5D01G196300 chr5A 87.216 1275 67 43 883 2102 397249619 397250852 0.000000e+00 1363.0
14 TraesCS5D01G196300 chr5A 90.663 664 30 14 2549 3184 397250924 397251583 0.000000e+00 854.0
15 TraesCS5D01G196300 chr5A 92.172 511 28 7 401 901 397248963 397249471 0.000000e+00 712.0
16 TraesCS5D01G196300 chr5A 96.594 411 14 0 3957 4367 397252263 397252673 0.000000e+00 682.0
17 TraesCS5D01G196300 chr5A 94.195 379 17 5 1 377 397248440 397248815 1.360000e-159 573.0
18 TraesCS5D01G196300 chr5A 79.825 342 43 19 1136 1472 616069370 616069690 4.390000e-55 226.0
19 TraesCS5D01G196300 chr5A 90.909 77 5 2 317 392 432230467 432230392 7.730000e-18 102.0
20 TraesCS5D01G196300 chr4D 88.589 333 38 0 1582 1914 81973252 81972920 5.260000e-109 405.0
21 TraesCS5D01G196300 chr4D 91.667 288 23 1 3082 3368 81972022 81971735 8.800000e-107 398.0
22 TraesCS5D01G196300 chr4D 82.812 320 36 14 1159 1472 81974160 81973854 7.200000e-68 268.0
23 TraesCS5D01G196300 chr4D 93.827 81 5 0 2754 2834 81972392 81972312 5.930000e-24 122.0
24 TraesCS5D01G196300 chr4D 89.610 77 6 2 317 392 218516287 218516212 3.590000e-16 97.1
25 TraesCS5D01G196300 chr4D 93.617 47 3 0 1001 1047 81974285 81974239 2.180000e-08 71.3
26 TraesCS5D01G196300 chr4D 95.349 43 2 0 1000 1042 81987449 81987407 7.840000e-08 69.4
27 TraesCS5D01G196300 chr1A 91.497 294 25 0 3075 3368 547392124 547391831 5.260000e-109 405.0
28 TraesCS5D01G196300 chr1A 97.931 145 3 0 1159 1303 547395710 547395566 7.250000e-63 252.0
29 TraesCS5D01G196300 chr1A 97.241 145 4 0 1159 1303 547417287 547417143 3.370000e-61 246.0
30 TraesCS5D01G196300 chr1A 96.104 77 3 0 1386 1462 547417072 547416996 4.580000e-25 126.0
31 TraesCS5D01G196300 chr1A 90.789 76 5 2 318 392 548375536 548375610 2.780000e-17 100.0
32 TraesCS5D01G196300 chr1A 88.889 81 5 4 313 392 590819574 590819651 3.590000e-16 97.1
33 TraesCS5D01G196300 chr1A 95.556 45 2 0 1001 1045 547417410 547417366 6.060000e-09 73.1
34 TraesCS5D01G196300 chr1A 93.182 44 3 0 1001 1044 547395833 547395790 1.010000e-06 65.8
35 TraesCS5D01G196300 chr1D 92.014 288 22 1 3082 3368 452625701 452625414 1.890000e-108 403.0
36 TraesCS5D01G196300 chr1D 85.266 319 28 16 1159 1462 452627430 452627116 1.180000e-80 311.0
37 TraesCS5D01G196300 chr1D 90.789 76 5 2 318 392 440050445 440050371 2.780000e-17 100.0
38 TraesCS5D01G196300 chr1D 88.750 80 7 2 314 392 276038054 276037976 3.590000e-16 97.1
39 TraesCS5D01G196300 chr4A 88.095 336 40 0 1582 1917 491916538 491916203 2.450000e-107 399.0
40 TraesCS5D01G196300 chr4A 91.901 284 23 0 3085 3368 491915395 491915112 8.800000e-107 398.0
41 TraesCS5D01G196300 chr4A 91.786 280 23 0 3087 3366 492030481 492030202 1.470000e-104 390.0
42 TraesCS5D01G196300 chr4A 82.769 325 39 10 1159 1472 491917492 491917174 1.550000e-69 274.0
43 TraesCS5D01G196300 chr4A 94.366 71 4 0 2764 2834 492030830 492030760 4.620000e-20 110.0
44 TraesCS5D01G196300 chr4A 95.122 41 2 0 1001 1041 491917615 491917575 1.010000e-06 65.8
45 TraesCS5D01G196300 chr1B 91.319 288 24 1 3082 3368 622706922 622706635 4.090000e-105 392.0
46 TraesCS5D01G196300 chr1B 84.177 316 32 15 1159 1462 622708752 622708443 1.540000e-74 291.0
47 TraesCS5D01G196300 chr1B 92.857 56 3 1 276 330 38906537 38906592 3.620000e-11 80.5
48 TraesCS5D01G196300 chr4B 90.625 288 26 1 3082 3368 115845858 115845571 8.860000e-102 381.0
49 TraesCS5D01G196300 chr4B 83.333 324 37 11 1159 1472 115847882 115847566 2.570000e-72 283.0
50 TraesCS5D01G196300 chr4B 95.775 71 3 0 2764 2834 115879990 115879920 9.920000e-22 115.0
51 TraesCS5D01G196300 chr4B 93.478 46 3 0 1001 1046 115848000 115847955 7.840000e-08 69.4
52 TraesCS5D01G196300 chr2B 89.744 78 6 2 320 396 309475389 309475465 1.000000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G196300 chr5D 299831604 299835970 4366 False 3719.000000 6678 100.000000 1 4367 2 chr5D.!!$F1 4366
1 TraesCS5D01G196300 chr5D 493120743 493121830 1087 False 275.500000 331 82.572500 1156 1914 2 chr5D.!!$F2 758
2 TraesCS5D01G196300 chr5B 341061646 341069595 7949 False 791.500000 1543 89.869167 1 4367 6 chr5B.!!$F2 4366
3 TraesCS5D01G196300 chr5B 608340805 608344541 3736 False 285.500000 388 90.305500 1156 3368 2 chr5B.!!$F3 2212
4 TraesCS5D01G196300 chr5A 397248440 397252673 4233 False 836.800000 1363 92.168000 1 4367 5 chr5A.!!$F2 4366
5 TraesCS5D01G196300 chr4D 81971735 81974285 2550 True 252.860000 405 90.102400 1001 3368 5 chr4D.!!$R3 2367
6 TraesCS5D01G196300 chr1A 547391831 547395833 4002 True 240.933333 405 94.203333 1001 3368 3 chr1A.!!$R1 2367
7 TraesCS5D01G196300 chr1D 452625414 452627430 2016 True 357.000000 403 88.640000 1159 3368 2 chr1D.!!$R3 2209
8 TraesCS5D01G196300 chr4A 491915112 491917615 2503 True 284.200000 399 89.471750 1001 3368 4 chr4A.!!$R1 2367
9 TraesCS5D01G196300 chr4A 492030202 492030830 628 True 250.000000 390 93.076000 2764 3366 2 chr4A.!!$R2 602
10 TraesCS5D01G196300 chr1B 622706635 622708752 2117 True 341.500000 392 87.748000 1159 3368 2 chr1B.!!$R1 2209
11 TraesCS5D01G196300 chr4B 115845571 115848000 2429 True 244.466667 381 89.145333 1001 3368 3 chr4B.!!$R2 2367

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 232 1.043816 TGGGATCAGCGAGGAATCTC 58.956 55.0 0.0 0.0 36.69 2.75 F
1713 10071 0.321122 GCAACCTCTGTGACCTCCTG 60.321 60.0 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 10289 0.391130 CGTCGGCTGGGAAGATTTCA 60.391 55.0 0.0 0.0 0.0 2.69 R
3571 12747 0.174845 CCCAGATGTAGGCGAACGAA 59.825 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 149 9.693739 ATATGACACCCTAACATTCATAAACAA 57.306 29.630 0.00 0.00 33.89 2.83
141 150 7.447374 TGACACCCTAACATTCATAAACAAG 57.553 36.000 0.00 0.00 0.00 3.16
142 151 7.227873 TGACACCCTAACATTCATAAACAAGA 58.772 34.615 0.00 0.00 0.00 3.02
144 153 7.882179 ACACCCTAACATTCATAAACAAGAAC 58.118 34.615 0.00 0.00 0.00 3.01
145 154 7.504238 ACACCCTAACATTCATAAACAAGAACA 59.496 33.333 0.00 0.00 0.00 3.18
146 155 8.522830 CACCCTAACATTCATAAACAAGAACAT 58.477 33.333 0.00 0.00 0.00 2.71
172 181 3.135994 AGCGTCGGAAATTAGTTTGTGT 58.864 40.909 0.00 0.00 0.00 3.72
223 232 1.043816 TGGGATCAGCGAGGAATCTC 58.956 55.000 0.00 0.00 36.69 2.75
334 344 1.223501 TCATCTACTCCCTCCGTCCT 58.776 55.000 0.00 0.00 0.00 3.85
337 347 4.173594 TCATCTACTCCCTCCGTCCTATA 58.826 47.826 0.00 0.00 0.00 1.31
350 360 5.888105 TCCGTCCTATAAATATAAGAGCGC 58.112 41.667 0.00 0.00 0.00 5.92
418 552 1.741327 GCATGGCCCGATGCTGATTT 61.741 55.000 18.43 0.00 44.57 2.17
510 648 9.221775 GCAGTTTGATGTAAATAAATTCTACGG 57.778 33.333 0.00 0.00 0.00 4.02
547 685 2.802247 TCACAACATGAGAGCAAGAACG 59.198 45.455 0.00 0.00 31.91 3.95
974 1296 4.746466 AGAAGAAGAAAGAGTGAGGGAGA 58.254 43.478 0.00 0.00 0.00 3.71
993 1316 3.976169 AGATATCGACTGAAGCTCTTGC 58.024 45.455 0.00 0.00 40.05 4.01
1129 1456 1.134367 GAAATTAACAAGGGAGGGCGC 59.866 52.381 0.00 0.00 0.00 6.53
1130 1457 0.683179 AATTAACAAGGGAGGGCGCC 60.683 55.000 21.18 21.18 0.00 6.53
1151 1482 4.618227 GCCTAGTTAATTTGGTTGGTGCTG 60.618 45.833 0.83 0.00 0.00 4.41
1153 1484 2.037121 AGTTAATTTGGTTGGTGCTGGC 59.963 45.455 0.00 0.00 0.00 4.85
1154 1485 1.709578 TAATTTGGTTGGTGCTGGCA 58.290 45.000 0.00 0.00 0.00 4.92
1303 1636 0.918983 TTCTGGGAGGCCAAGGTATG 59.081 55.000 5.01 0.00 0.00 2.39
1368 1712 7.408756 TTTCCAATTTACTTCATCTGGATGG 57.591 36.000 10.22 0.00 39.24 3.51
1474 5562 3.477210 GAGGGTATCCATCCACTCAAC 57.523 52.381 0.00 0.00 34.83 3.18
1477 5565 3.852578 AGGGTATCCATCCACTCAACTTT 59.147 43.478 0.00 0.00 34.83 2.66
1478 5566 4.292306 AGGGTATCCATCCACTCAACTTTT 59.708 41.667 0.00 0.00 34.83 2.27
1564 5663 9.793259 GAACCCTCACCTGAATTATGATTTATA 57.207 33.333 0.00 0.00 0.00 0.98
1602 9957 2.125512 ATTGTGGAGAGCGTCGGC 60.126 61.111 0.00 0.00 40.37 5.54
1713 10071 0.321122 GCAACCTCTGTGACCTCCTG 60.321 60.000 0.00 0.00 0.00 3.86
1776 10134 2.180769 CGCTTCACCATCGACGGA 59.819 61.111 3.60 0.00 0.00 4.69
1931 10289 9.895138 AACCGGTAAAAGTCTATTTGTACATAT 57.105 29.630 8.00 0.00 0.00 1.78
2084 10451 2.341846 TTTTCGGTCTTGGAGCTGTT 57.658 45.000 0.00 0.00 0.00 3.16
2105 10472 0.512952 GCCTTGCTGTAAGTGACACG 59.487 55.000 4.81 0.00 35.30 4.49
2106 10473 0.512952 CCTTGCTGTAAGTGACACGC 59.487 55.000 4.81 0.00 35.30 5.34
2121 10639 4.213482 GTGACACGCTATTCTTTCAGGTTT 59.787 41.667 0.00 0.00 0.00 3.27
2122 10640 4.819630 TGACACGCTATTCTTTCAGGTTTT 59.180 37.500 0.00 0.00 0.00 2.43
2127 10645 5.300792 ACGCTATTCTTTCAGGTTTTTGGAA 59.699 36.000 0.00 0.00 0.00 3.53
2128 10646 5.629435 CGCTATTCTTTCAGGTTTTTGGAAC 59.371 40.000 0.00 0.00 0.00 3.62
2130 10648 7.154656 GCTATTCTTTCAGGTTTTTGGAACAT 58.845 34.615 0.00 0.00 39.30 2.71
2131 10649 7.116805 GCTATTCTTTCAGGTTTTTGGAACATG 59.883 37.037 0.00 0.00 39.30 3.21
2132 10650 5.275067 TCTTTCAGGTTTTTGGAACATGG 57.725 39.130 0.00 0.00 39.30 3.66
2133 10651 3.467374 TTCAGGTTTTTGGAACATGGC 57.533 42.857 0.00 0.00 39.30 4.40
2134 10652 2.676748 TCAGGTTTTTGGAACATGGCT 58.323 42.857 0.00 0.00 39.30 4.75
2135 10653 2.627699 TCAGGTTTTTGGAACATGGCTC 59.372 45.455 0.00 0.00 39.30 4.70
2136 10654 1.970640 AGGTTTTTGGAACATGGCTCC 59.029 47.619 8.76 8.76 39.30 4.70
2137 10655 1.691434 GGTTTTTGGAACATGGCTCCA 59.309 47.619 13.33 13.33 41.33 3.86
2138 10656 2.547855 GGTTTTTGGAACATGGCTCCAC 60.548 50.000 16.20 6.98 42.76 4.02
2139 10657 0.958091 TTTTGGAACATGGCTCCACG 59.042 50.000 16.20 0.00 42.76 4.94
2140 10658 0.893270 TTTGGAACATGGCTCCACGG 60.893 55.000 16.20 0.00 42.76 4.94
2141 10659 1.773856 TTGGAACATGGCTCCACGGA 61.774 55.000 16.20 2.41 42.76 4.69
2142 10660 1.002624 GGAACATGGCTCCACGGAA 60.003 57.895 10.45 0.00 32.77 4.30
2143 10661 0.608035 GGAACATGGCTCCACGGAAA 60.608 55.000 10.45 0.00 32.77 3.13
2144 10662 0.521735 GAACATGGCTCCACGGAAAC 59.478 55.000 0.00 0.00 0.00 2.78
2145 10663 0.893727 AACATGGCTCCACGGAAACC 60.894 55.000 0.00 0.00 0.00 3.27
2146 10664 2.046285 CATGGCTCCACGGAAACCC 61.046 63.158 0.00 0.00 0.00 4.11
2147 10665 2.231380 ATGGCTCCACGGAAACCCT 61.231 57.895 0.00 0.00 0.00 4.34
2148 10666 1.789576 ATGGCTCCACGGAAACCCTT 61.790 55.000 0.00 0.00 0.00 3.95
2149 10667 1.228459 GGCTCCACGGAAACCCTTT 60.228 57.895 0.00 0.00 0.00 3.11
2150 10668 1.524008 GGCTCCACGGAAACCCTTTG 61.524 60.000 0.00 0.00 0.00 2.77
2151 10669 0.822121 GCTCCACGGAAACCCTTTGT 60.822 55.000 0.00 0.00 0.00 2.83
2152 10670 0.951558 CTCCACGGAAACCCTTTGTG 59.048 55.000 0.00 0.00 0.00 3.33
2153 10671 0.547075 TCCACGGAAACCCTTTGTGA 59.453 50.000 0.00 0.00 32.39 3.58
2154 10672 1.064611 TCCACGGAAACCCTTTGTGAA 60.065 47.619 0.00 0.00 32.39 3.18
2155 10673 1.960689 CCACGGAAACCCTTTGTGAAT 59.039 47.619 0.00 0.00 32.39 2.57
2156 10674 2.288152 CCACGGAAACCCTTTGTGAATG 60.288 50.000 0.00 0.00 32.39 2.67
2157 10675 1.960689 ACGGAAACCCTTTGTGAATGG 59.039 47.619 0.00 0.00 0.00 3.16
2158 10676 1.960689 CGGAAACCCTTTGTGAATGGT 59.039 47.619 0.00 0.00 35.57 3.55
2159 10677 3.150767 CGGAAACCCTTTGTGAATGGTA 58.849 45.455 0.00 0.00 33.28 3.25
2160 10678 3.570550 CGGAAACCCTTTGTGAATGGTAA 59.429 43.478 0.00 0.00 33.28 2.85
2161 10679 4.038162 CGGAAACCCTTTGTGAATGGTAAA 59.962 41.667 0.00 0.00 33.28 2.01
2162 10680 5.279256 CGGAAACCCTTTGTGAATGGTAAAT 60.279 40.000 0.00 0.00 33.28 1.40
2163 10681 6.530120 GGAAACCCTTTGTGAATGGTAAATT 58.470 36.000 0.00 0.00 33.28 1.82
2164 10682 6.649141 GGAAACCCTTTGTGAATGGTAAATTC 59.351 38.462 0.00 0.00 33.28 2.17
2165 10683 5.385509 ACCCTTTGTGAATGGTAAATTCG 57.614 39.130 0.00 0.00 32.74 3.34
2166 10684 4.219725 ACCCTTTGTGAATGGTAAATTCGG 59.780 41.667 0.00 0.00 32.74 4.30
2167 10685 4.461081 CCCTTTGTGAATGGTAAATTCGGA 59.539 41.667 0.00 0.00 0.00 4.55
2168 10686 5.047660 CCCTTTGTGAATGGTAAATTCGGAA 60.048 40.000 0.00 0.00 0.00 4.30
2169 10687 6.451393 CCTTTGTGAATGGTAAATTCGGAAA 58.549 36.000 0.00 0.00 0.00 3.13
2170 10688 6.926272 CCTTTGTGAATGGTAAATTCGGAAAA 59.074 34.615 0.00 0.00 0.00 2.29
2171 10689 7.439655 CCTTTGTGAATGGTAAATTCGGAAAAA 59.560 33.333 0.00 0.00 0.00 1.94
2237 10755 7.503549 CATACATAGTCGATCTGTATGCTTG 57.496 40.000 21.55 10.79 43.16 4.01
2238 10756 4.302455 ACATAGTCGATCTGTATGCTTGC 58.698 43.478 0.00 0.00 0.00 4.01
2239 10757 4.038522 ACATAGTCGATCTGTATGCTTGCT 59.961 41.667 0.00 0.00 0.00 3.91
2240 10758 3.090952 AGTCGATCTGTATGCTTGCTC 57.909 47.619 0.00 0.00 0.00 4.26
2241 10759 1.783711 GTCGATCTGTATGCTTGCTCG 59.216 52.381 0.00 0.00 0.00 5.03
2242 10760 0.506080 CGATCTGTATGCTTGCTCGC 59.494 55.000 0.00 0.00 0.00 5.03
2243 10761 1.575244 GATCTGTATGCTTGCTCGCA 58.425 50.000 3.08 3.08 45.10 5.10
2260 10778 3.008456 CGCATACGAAGTTTCACGAAG 57.992 47.619 0.00 0.00 37.78 3.79
2261 10779 2.659757 CGCATACGAAGTTTCACGAAGA 59.340 45.455 0.00 0.00 37.78 2.87
2262 10780 3.120616 CGCATACGAAGTTTCACGAAGAA 59.879 43.478 0.00 0.00 37.78 2.52
2263 10781 4.375606 CGCATACGAAGTTTCACGAAGAAA 60.376 41.667 0.00 0.00 37.78 2.52
2264 10782 5.667888 CGCATACGAAGTTTCACGAAGAAAT 60.668 40.000 10.10 0.00 44.48 2.17
2265 10783 6.453265 CGCATACGAAGTTTCACGAAGAAATA 60.453 38.462 10.10 1.33 44.48 1.40
2266 10784 7.877932 CGCATACGAAGTTTCACGAAGAAATAA 60.878 37.037 10.10 0.00 44.48 1.40
2275 10793 7.680442 TTTCACGAAGAAATAACATCCATGA 57.320 32.000 0.00 0.00 41.17 3.07
2276 10794 7.864108 TTCACGAAGAAATAACATCCATGAT 57.136 32.000 0.00 0.00 32.05 2.45
2277 10795 8.956533 TTCACGAAGAAATAACATCCATGATA 57.043 30.769 0.00 0.00 32.05 2.15
2278 10796 8.956533 TCACGAAGAAATAACATCCATGATAA 57.043 30.769 0.00 0.00 0.00 1.75
2279 10797 9.389755 TCACGAAGAAATAACATCCATGATAAA 57.610 29.630 0.00 0.00 0.00 1.40
2284 10802 9.768662 AAGAAATAACATCCATGATAAAATGGC 57.231 29.630 0.00 0.00 45.82 4.40
2285 10803 8.926374 AGAAATAACATCCATGATAAAATGGCA 58.074 29.630 0.00 0.00 45.82 4.92
2286 10804 9.545105 GAAATAACATCCATGATAAAATGGCAA 57.455 29.630 0.00 0.00 45.82 4.52
2287 10805 9.902684 AAATAACATCCATGATAAAATGGCAAA 57.097 25.926 0.00 0.00 45.82 3.68
2288 10806 9.902684 AATAACATCCATGATAAAATGGCAAAA 57.097 25.926 0.00 0.00 45.82 2.44
2290 10808 8.441312 AACATCCATGATAAAATGGCAAAATC 57.559 30.769 0.00 0.00 45.82 2.17
2291 10809 6.702723 ACATCCATGATAAAATGGCAAAATCG 59.297 34.615 0.00 0.00 45.82 3.34
2292 10810 6.462552 TCCATGATAAAATGGCAAAATCGA 57.537 33.333 0.00 0.00 45.82 3.59
2293 10811 7.053316 TCCATGATAAAATGGCAAAATCGAT 57.947 32.000 0.00 0.00 45.82 3.59
2294 10812 6.924612 TCCATGATAAAATGGCAAAATCGATG 59.075 34.615 0.00 0.00 45.82 3.84
2295 10813 6.347079 CCATGATAAAATGGCAAAATCGATGC 60.347 38.462 0.00 0.00 40.74 3.91
2296 10814 5.904941 TGATAAAATGGCAAAATCGATGCT 58.095 33.333 9.20 0.00 43.34 3.79
2297 10815 7.036996 TGATAAAATGGCAAAATCGATGCTA 57.963 32.000 9.20 3.81 43.34 3.49
2298 10816 7.660112 TGATAAAATGGCAAAATCGATGCTAT 58.340 30.769 9.20 6.03 45.45 2.97
2299 10817 8.791675 TGATAAAATGGCAAAATCGATGCTATA 58.208 29.630 8.51 0.00 43.15 1.31
2300 10818 9.624697 GATAAAATGGCAAAATCGATGCTATAA 57.375 29.630 8.51 0.01 43.15 0.98
2301 10819 9.979578 ATAAAATGGCAAAATCGATGCTATAAA 57.020 25.926 8.51 0.00 43.15 1.40
2302 10820 8.715191 AAAATGGCAAAATCGATGCTATAAAA 57.285 26.923 8.51 0.00 43.15 1.52
2303 10821 8.715191 AAATGGCAAAATCGATGCTATAAAAA 57.285 26.923 8.51 0.00 43.15 1.94
2328 10846 6.142818 CCATTGTTTGGTTGAACAGTTAGA 57.857 37.500 0.00 0.00 40.33 2.10
2329 10847 6.748132 CCATTGTTTGGTTGAACAGTTAGAT 58.252 36.000 0.00 0.00 40.33 1.98
2330 10848 7.209475 CCATTGTTTGGTTGAACAGTTAGATT 58.791 34.615 0.00 0.00 40.33 2.40
2331 10849 7.710475 CCATTGTTTGGTTGAACAGTTAGATTT 59.290 33.333 0.00 0.00 40.33 2.17
2332 10850 8.755018 CATTGTTTGGTTGAACAGTTAGATTTC 58.245 33.333 0.00 0.00 40.33 2.17
2333 10851 6.491394 TGTTTGGTTGAACAGTTAGATTTCG 58.509 36.000 0.00 0.00 34.77 3.46
2334 10852 6.316640 TGTTTGGTTGAACAGTTAGATTTCGA 59.683 34.615 0.00 0.00 34.77 3.71
2335 10853 7.012894 TGTTTGGTTGAACAGTTAGATTTCGAT 59.987 33.333 0.00 0.00 34.77 3.59
2336 10854 7.504924 TTGGTTGAACAGTTAGATTTCGATT 57.495 32.000 0.00 0.00 0.00 3.34
2337 10855 6.898041 TGGTTGAACAGTTAGATTTCGATTG 58.102 36.000 0.00 0.00 0.00 2.67
2338 10856 6.485313 TGGTTGAACAGTTAGATTTCGATTGT 59.515 34.615 0.00 0.00 0.00 2.71
2339 10857 7.658167 TGGTTGAACAGTTAGATTTCGATTGTA 59.342 33.333 0.00 0.00 0.00 2.41
2340 10858 8.665685 GGTTGAACAGTTAGATTTCGATTGTAT 58.334 33.333 0.00 0.00 0.00 2.29
2341 10859 9.478019 GTTGAACAGTTAGATTTCGATTGTATG 57.522 33.333 0.00 0.00 0.00 2.39
2342 10860 8.771920 TGAACAGTTAGATTTCGATTGTATGT 57.228 30.769 0.00 0.00 0.00 2.29
2343 10861 9.214957 TGAACAGTTAGATTTCGATTGTATGTT 57.785 29.630 0.00 0.00 0.00 2.71
2344 10862 9.690434 GAACAGTTAGATTTCGATTGTATGTTC 57.310 33.333 0.00 0.00 36.15 3.18
2345 10863 9.436957 AACAGTTAGATTTCGATTGTATGTTCT 57.563 29.630 0.00 0.00 0.00 3.01
2346 10864 9.436957 ACAGTTAGATTTCGATTGTATGTTCTT 57.563 29.630 0.00 0.00 0.00 2.52
2347 10865 9.907576 CAGTTAGATTTCGATTGTATGTTCTTC 57.092 33.333 0.00 0.00 0.00 2.87
2348 10866 9.653287 AGTTAGATTTCGATTGTATGTTCTTCA 57.347 29.630 0.00 0.00 0.00 3.02
2349 10867 9.690434 GTTAGATTTCGATTGTATGTTCTTCAC 57.310 33.333 0.00 0.00 0.00 3.18
2350 10868 7.308782 AGATTTCGATTGTATGTTCTTCACC 57.691 36.000 0.00 0.00 0.00 4.02
2351 10869 5.524511 TTTCGATTGTATGTTCTTCACCG 57.475 39.130 0.00 0.00 0.00 4.94
2352 10870 4.443913 TCGATTGTATGTTCTTCACCGA 57.556 40.909 0.00 0.00 0.00 4.69
2353 10871 4.421058 TCGATTGTATGTTCTTCACCGAG 58.579 43.478 0.00 0.00 0.00 4.63
2354 10872 4.157105 TCGATTGTATGTTCTTCACCGAGA 59.843 41.667 0.00 0.00 0.00 4.04
2355 10873 4.862574 CGATTGTATGTTCTTCACCGAGAA 59.137 41.667 0.00 0.00 33.44 2.87
2356 10874 5.520288 CGATTGTATGTTCTTCACCGAGAAT 59.480 40.000 0.00 0.00 37.91 2.40
2357 10875 6.695713 CGATTGTATGTTCTTCACCGAGAATA 59.304 38.462 0.00 0.00 37.91 1.75
2358 10876 7.306051 CGATTGTATGTTCTTCACCGAGAATAC 60.306 40.741 0.00 0.00 37.91 1.89
2359 10877 5.657474 TGTATGTTCTTCACCGAGAATACC 58.343 41.667 0.00 0.00 37.91 2.73
2360 10878 4.819105 ATGTTCTTCACCGAGAATACCA 57.181 40.909 0.00 0.00 37.91 3.25
2361 10879 3.921677 TGTTCTTCACCGAGAATACCAC 58.078 45.455 0.00 0.00 37.91 4.16
2362 10880 2.921754 GTTCTTCACCGAGAATACCACG 59.078 50.000 0.00 0.00 37.91 4.94
2368 10886 1.959282 ACCGAGAATACCACGGGTATC 59.041 52.381 13.79 9.02 46.88 2.24
2369 10887 1.958579 CCGAGAATACCACGGGTATCA 59.041 52.381 13.79 0.00 46.88 2.15
2370 10888 2.561419 CCGAGAATACCACGGGTATCAT 59.439 50.000 13.79 7.52 46.88 2.45
2371 10889 3.006537 CCGAGAATACCACGGGTATCATT 59.993 47.826 13.79 3.53 46.88 2.57
2372 10890 4.235360 CGAGAATACCACGGGTATCATTC 58.765 47.826 13.79 10.69 46.88 2.67
2373 10891 4.566987 GAGAATACCACGGGTATCATTCC 58.433 47.826 13.79 4.21 46.88 3.01
2374 10892 3.006537 AGAATACCACGGGTATCATTCCG 59.993 47.826 13.79 0.00 46.88 4.30
2380 10898 2.812358 CGGGTATCATTCCGTCATGA 57.188 50.000 0.00 0.00 41.23 3.07
2381 10899 3.106242 CGGGTATCATTCCGTCATGAA 57.894 47.619 0.00 0.00 41.23 2.57
2382 10900 3.462982 CGGGTATCATTCCGTCATGAAA 58.537 45.455 0.00 0.00 41.23 2.69
2383 10901 3.247648 CGGGTATCATTCCGTCATGAAAC 59.752 47.826 0.00 0.00 41.23 2.78
2384 10902 4.451900 GGGTATCATTCCGTCATGAAACT 58.548 43.478 0.00 0.00 36.74 2.66
2385 10903 4.881850 GGGTATCATTCCGTCATGAAACTT 59.118 41.667 0.00 0.00 36.74 2.66
2386 10904 5.007724 GGGTATCATTCCGTCATGAAACTTC 59.992 44.000 0.00 0.00 36.74 3.01
2387 10905 5.584649 GGTATCATTCCGTCATGAAACTTCA 59.415 40.000 0.00 0.00 42.14 3.02
2388 10906 6.093495 GGTATCATTCCGTCATGAAACTTCAA 59.907 38.462 0.00 0.00 41.13 2.69
2389 10907 6.573664 ATCATTCCGTCATGAAACTTCAAA 57.426 33.333 0.00 0.00 41.13 2.69
2390 10908 5.757886 TCATTCCGTCATGAAACTTCAAAC 58.242 37.500 0.00 0.00 41.13 2.93
2391 10909 5.298026 TCATTCCGTCATGAAACTTCAAACA 59.702 36.000 0.00 0.00 41.13 2.83
2392 10910 4.545823 TCCGTCATGAAACTTCAAACAC 57.454 40.909 0.00 0.00 41.13 3.32
2393 10911 3.001838 TCCGTCATGAAACTTCAAACACG 59.998 43.478 0.00 11.40 41.13 4.49
2394 10912 3.001838 CCGTCATGAAACTTCAAACACGA 59.998 43.478 16.58 1.16 41.13 4.35
2395 10913 4.203828 CGTCATGAAACTTCAAACACGAG 58.796 43.478 0.00 0.00 41.13 4.18
2396 10914 4.260212 CGTCATGAAACTTCAAACACGAGT 60.260 41.667 0.00 0.00 41.13 4.18
2397 10915 5.051307 CGTCATGAAACTTCAAACACGAGTA 60.051 40.000 0.00 0.00 41.13 2.59
2398 10916 6.355638 GTCATGAAACTTCAAACACGAGTAG 58.644 40.000 0.00 0.00 41.13 2.57
2399 10917 4.789095 TGAAACTTCAAACACGAGTAGC 57.211 40.909 0.00 0.00 33.55 3.58
2400 10918 4.439057 TGAAACTTCAAACACGAGTAGCT 58.561 39.130 0.00 0.00 33.55 3.32
2401 10919 5.593968 TGAAACTTCAAACACGAGTAGCTA 58.406 37.500 0.00 0.00 33.55 3.32
2402 10920 5.690409 TGAAACTTCAAACACGAGTAGCTAG 59.310 40.000 0.00 0.00 33.55 3.42
2403 10921 5.449107 AACTTCAAACACGAGTAGCTAGA 57.551 39.130 0.00 0.00 0.00 2.43
2404 10922 5.449107 ACTTCAAACACGAGTAGCTAGAA 57.551 39.130 0.00 0.00 0.00 2.10
2405 10923 6.026947 ACTTCAAACACGAGTAGCTAGAAT 57.973 37.500 0.00 0.00 0.00 2.40
2406 10924 5.864474 ACTTCAAACACGAGTAGCTAGAATG 59.136 40.000 0.00 0.00 0.00 2.67
2407 10925 4.744570 TCAAACACGAGTAGCTAGAATGG 58.255 43.478 0.00 0.00 0.00 3.16
2408 10926 4.219944 TCAAACACGAGTAGCTAGAATGGT 59.780 41.667 0.00 0.00 0.00 3.55
2409 10927 4.373348 AACACGAGTAGCTAGAATGGTC 57.627 45.455 0.00 0.00 0.00 4.02
2410 10928 2.355132 ACACGAGTAGCTAGAATGGTCG 59.645 50.000 0.00 0.00 0.00 4.79
2411 10929 1.948145 ACGAGTAGCTAGAATGGTCGG 59.052 52.381 0.00 0.00 0.00 4.79
2412 10930 1.335142 CGAGTAGCTAGAATGGTCGGC 60.335 57.143 0.00 0.00 0.00 5.54
2413 10931 1.000052 GAGTAGCTAGAATGGTCGGCC 60.000 57.143 0.00 0.00 0.00 6.13
2424 10942 1.816074 TGGTCGGCCAACTTTGATAC 58.184 50.000 6.10 0.00 42.83 2.24
2425 10943 1.092348 GGTCGGCCAACTTTGATACC 58.908 55.000 0.00 0.00 34.09 2.73
2426 10944 1.092348 GTCGGCCAACTTTGATACCC 58.908 55.000 2.24 0.00 0.00 3.69
2427 10945 0.034863 TCGGCCAACTTTGATACCCC 60.035 55.000 2.24 0.00 0.00 4.95
2428 10946 0.322997 CGGCCAACTTTGATACCCCA 60.323 55.000 2.24 0.00 0.00 4.96
2429 10947 1.888826 CGGCCAACTTTGATACCCCAA 60.889 52.381 2.24 0.00 0.00 4.12
2430 10948 2.252714 GGCCAACTTTGATACCCCAAA 58.747 47.619 0.00 0.00 35.09 3.28
2431 10949 2.635427 GGCCAACTTTGATACCCCAAAA 59.365 45.455 0.00 0.00 35.83 2.44
2432 10950 3.263170 GGCCAACTTTGATACCCCAAAAT 59.737 43.478 0.00 0.00 35.83 1.82
2433 10951 4.263287 GGCCAACTTTGATACCCCAAAATT 60.263 41.667 0.00 0.00 35.83 1.82
2434 10952 5.312895 GCCAACTTTGATACCCCAAAATTT 58.687 37.500 0.00 0.00 35.83 1.82
2435 10953 5.411361 GCCAACTTTGATACCCCAAAATTTC 59.589 40.000 0.00 0.00 35.83 2.17
2436 10954 6.529220 CCAACTTTGATACCCCAAAATTTCA 58.471 36.000 0.00 0.00 35.83 2.69
2437 10955 6.650390 CCAACTTTGATACCCCAAAATTTCAG 59.350 38.462 0.00 0.00 35.83 3.02
2438 10956 7.441017 CAACTTTGATACCCCAAAATTTCAGA 58.559 34.615 0.00 0.00 35.83 3.27
2439 10957 7.610580 ACTTTGATACCCCAAAATTTCAGAA 57.389 32.000 0.00 0.00 35.83 3.02
2440 10958 8.206126 ACTTTGATACCCCAAAATTTCAGAAT 57.794 30.769 0.00 0.00 35.83 2.40
2441 10959 8.659527 ACTTTGATACCCCAAAATTTCAGAATT 58.340 29.630 0.00 0.00 35.83 2.17
2442 10960 9.506018 CTTTGATACCCCAAAATTTCAGAATTT 57.494 29.630 0.00 0.00 45.06 1.82
2485 11003 9.835389 ATTTTTCTTGATTTTCCTTTCACATGA 57.165 25.926 0.00 0.00 0.00 3.07
2486 11004 8.876275 TTTTCTTGATTTTCCTTTCACATGAG 57.124 30.769 0.00 0.00 0.00 2.90
2487 11005 7.587037 TTCTTGATTTTCCTTTCACATGAGT 57.413 32.000 0.00 0.00 0.00 3.41
2489 11007 5.125100 TGATTTTCCTTTCACATGAGTGC 57.875 39.130 0.00 0.00 45.49 4.40
2490 11008 3.624326 TTTTCCTTTCACATGAGTGCG 57.376 42.857 0.00 0.00 45.49 5.34
2491 11009 0.874390 TTCCTTTCACATGAGTGCGC 59.126 50.000 0.00 0.00 45.49 6.09
2492 11010 0.035317 TCCTTTCACATGAGTGCGCT 59.965 50.000 9.73 0.00 45.49 5.92
2493 11011 0.877071 CCTTTCACATGAGTGCGCTT 59.123 50.000 9.73 0.00 45.49 4.68
2494 11012 1.400629 CCTTTCACATGAGTGCGCTTG 60.401 52.381 9.73 0.00 45.49 4.01
2495 11013 1.532437 CTTTCACATGAGTGCGCTTGA 59.468 47.619 9.73 0.00 45.49 3.02
2496 11014 1.592064 TTCACATGAGTGCGCTTGAA 58.408 45.000 9.73 4.50 45.49 2.69
2497 11015 1.592064 TCACATGAGTGCGCTTGAAA 58.408 45.000 9.73 0.00 45.49 2.69
2498 11016 1.264020 TCACATGAGTGCGCTTGAAAC 59.736 47.619 9.73 0.00 45.49 2.78
2499 11017 1.002576 CACATGAGTGCGCTTGAAACA 60.003 47.619 9.73 0.00 39.21 2.83
2500 11018 1.675483 ACATGAGTGCGCTTGAAACAA 59.325 42.857 9.73 0.00 0.00 2.83
2501 11019 2.294233 ACATGAGTGCGCTTGAAACAAT 59.706 40.909 9.73 0.00 0.00 2.71
2502 11020 3.243501 ACATGAGTGCGCTTGAAACAATT 60.244 39.130 9.73 0.00 0.00 2.32
2503 11021 2.730069 TGAGTGCGCTTGAAACAATTG 58.270 42.857 9.73 3.24 0.00 2.32
2504 11022 2.098934 TGAGTGCGCTTGAAACAATTGT 59.901 40.909 9.73 4.92 0.00 2.71
2505 11023 3.115554 GAGTGCGCTTGAAACAATTGTT 58.884 40.909 18.13 18.13 40.50 2.83
2506 11024 3.115554 AGTGCGCTTGAAACAATTGTTC 58.884 40.909 23.47 16.50 37.25 3.18
2507 11025 2.857152 GTGCGCTTGAAACAATTGTTCA 59.143 40.909 23.47 18.60 37.25 3.18
2508 11026 2.857152 TGCGCTTGAAACAATTGTTCAC 59.143 40.909 23.47 19.32 37.25 3.18
2509 11027 2.218530 GCGCTTGAAACAATTGTTCACC 59.781 45.455 23.47 15.55 37.25 4.02
2510 11028 3.705604 CGCTTGAAACAATTGTTCACCT 58.294 40.909 23.47 8.59 37.25 4.00
2511 11029 4.111916 CGCTTGAAACAATTGTTCACCTT 58.888 39.130 23.47 8.20 37.25 3.50
2512 11030 4.566360 CGCTTGAAACAATTGTTCACCTTT 59.434 37.500 23.47 7.45 37.25 3.11
2514 11032 5.351189 GCTTGAAACAATTGTTCACCTTTGT 59.649 36.000 23.47 5.95 37.25 2.83
2516 11034 7.464045 GCTTGAAACAATTGTTCACCTTTGTAC 60.464 37.037 23.47 3.64 37.25 2.90
2518 11036 7.607250 TGAAACAATTGTTCACCTTTGTACTT 58.393 30.769 23.47 3.74 37.25 2.24
2520 11038 8.474006 AAACAATTGTTCACCTTTGTACTTTC 57.526 30.769 23.47 0.00 37.25 2.62
2521 11039 6.262601 ACAATTGTTCACCTTTGTACTTTCG 58.737 36.000 4.92 0.00 30.89 3.46
2546 11064 5.751028 GCTATGACCAAGACTAATCACTGAC 59.249 44.000 0.00 0.00 0.00 3.51
2547 11065 5.745312 ATGACCAAGACTAATCACTGACA 57.255 39.130 0.00 0.00 0.00 3.58
2640 11162 3.181495 CCTGCAAAACACGAACAAGGTAA 60.181 43.478 0.00 0.00 0.00 2.85
2646 11168 1.535462 ACACGAACAAGGTAAGCATGC 59.465 47.619 10.51 10.51 0.00 4.06
2657 11179 3.152341 GGTAAGCATGCTAATCTGCCAT 58.848 45.455 23.00 4.09 39.22 4.40
2660 11187 2.662866 AGCATGCTAATCTGCCATTGT 58.337 42.857 21.21 0.00 39.22 2.71
2675 11202 3.136763 CCATTGTCATCGATCTTCAGGG 58.863 50.000 0.00 0.00 0.00 4.45
2709 11241 4.261578 ACTCCATCTTGCCAAAAATGTG 57.738 40.909 0.47 0.00 0.00 3.21
2725 11310 1.301423 TGTGTTGGTTACCGAAGCAC 58.699 50.000 5.67 5.67 42.60 4.40
2727 11312 1.877443 GTGTTGGTTACCGAAGCACAT 59.123 47.619 7.32 0.00 42.60 3.21
2732 11317 1.467342 GGTTACCGAAGCACATTGACC 59.533 52.381 0.00 0.00 33.08 4.02
2733 11318 1.467342 GTTACCGAAGCACATTGACCC 59.533 52.381 0.00 0.00 0.00 4.46
2759 11345 1.892338 CAACCCCATGCATGTCCAC 59.108 57.895 24.58 0.00 0.00 4.02
2896 11530 2.513753 TGAAATGCTGACGGTCCAAAT 58.486 42.857 5.55 0.00 0.00 2.32
2898 11532 4.269183 TGAAATGCTGACGGTCCAAATAT 58.731 39.130 5.55 0.00 0.00 1.28
3014 11648 1.273688 GCGTGCACGATGTACATACA 58.726 50.000 41.19 2.39 43.02 2.29
3060 11790 4.321718 TCTGCTTGAAACTGAATCCTGAG 58.678 43.478 0.00 0.00 0.00 3.35
3061 11791 3.415212 TGCTTGAAACTGAATCCTGAGG 58.585 45.455 0.00 0.00 0.00 3.86
3360 12095 0.250209 GCTGCGTCATCAGGATGGAT 60.250 55.000 9.25 0.00 39.24 3.41
3375 12111 4.105537 AGGATGGATGAGTAGAGTAGAGCA 59.894 45.833 0.00 0.00 0.00 4.26
3407 12143 0.250038 TCATCCCTCGCTGCTATTGC 60.250 55.000 0.00 0.00 40.20 3.56
3426 12162 6.573664 ATTGCACTACAACACACATGTATT 57.426 33.333 0.00 0.00 42.27 1.89
3438 12175 6.003950 ACACACATGTATTACCTCTTTGCTT 58.996 36.000 0.00 0.00 37.26 3.91
3439 12176 7.165485 ACACACATGTATTACCTCTTTGCTTA 58.835 34.615 0.00 0.00 37.26 3.09
3440 12177 7.119262 ACACACATGTATTACCTCTTTGCTTAC 59.881 37.037 0.00 0.00 37.26 2.34
3473 12253 3.537874 CGCCCCTTAGGACTCCGG 61.538 72.222 0.00 0.00 38.24 5.14
3479 12259 1.139058 CCCTTAGGACTCCGGTTCATG 59.861 57.143 0.00 0.00 33.47 3.07
3494 12274 6.712998 TCCGGTTCATGAAATAAACAGAAGAA 59.287 34.615 10.35 0.00 0.00 2.52
3520 12300 3.105937 GCTCGATTAATTTGCGGAAACC 58.894 45.455 3.52 0.00 0.00 3.27
3522 12302 3.082548 TCGATTAATTTGCGGAAACCCA 58.917 40.909 3.52 0.00 0.00 4.51
3523 12303 3.506455 TCGATTAATTTGCGGAAACCCAA 59.494 39.130 3.52 0.00 0.00 4.12
3524 12304 3.857093 CGATTAATTTGCGGAAACCCAAG 59.143 43.478 3.52 0.00 0.00 3.61
3525 12305 4.617298 CGATTAATTTGCGGAAACCCAAGT 60.617 41.667 3.52 0.00 0.00 3.16
3526 12306 2.524569 AATTTGCGGAAACCCAAGTG 57.475 45.000 3.52 0.00 0.00 3.16
3530 12310 1.475403 TGCGGAAACCCAAGTGAAAA 58.525 45.000 0.00 0.00 0.00 2.29
3532 12312 1.537348 GCGGAAACCCAAGTGAAAACC 60.537 52.381 0.00 0.00 0.00 3.27
3533 12313 1.751924 CGGAAACCCAAGTGAAAACCA 59.248 47.619 0.00 0.00 0.00 3.67
3534 12314 2.364002 CGGAAACCCAAGTGAAAACCAT 59.636 45.455 0.00 0.00 0.00 3.55
3536 12316 4.038162 CGGAAACCCAAGTGAAAACCATAA 59.962 41.667 0.00 0.00 0.00 1.90
4018 13195 9.656040 GCAGATGATCAGATTTAATCTACATCT 57.344 33.333 26.14 26.14 44.58 2.90
4051 13228 0.384353 GAAGAAGCGTGCGTGAAACC 60.384 55.000 0.00 0.00 0.00 3.27
4060 13237 1.062294 GTGCGTGAAACCGTGTTACAA 59.938 47.619 0.00 0.00 0.00 2.41
4131 13308 7.974675 TGCTCAGTATTTACAAACTATTGCTC 58.025 34.615 0.00 0.00 40.34 4.26
4152 13329 6.071784 TGCTCGGTTGAGTATACTTTGTAAGA 60.072 38.462 6.88 2.85 44.48 2.10
4253 13430 5.414454 TGTATCCAAATACAGACTTTGTGGC 59.586 40.000 0.00 0.00 42.19 5.01
4318 13495 2.742053 CGACCATGTTGTTAGTCCAAGG 59.258 50.000 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 147 4.224715 TCCGACGCTCTATATGTTCTTG 57.775 45.455 0.00 0.00 0.00 3.02
139 148 4.913335 TTCCGACGCTCTATATGTTCTT 57.087 40.909 0.00 0.00 0.00 2.52
140 149 4.913335 TTTCCGACGCTCTATATGTTCT 57.087 40.909 0.00 0.00 0.00 3.01
141 150 6.862090 ACTAATTTCCGACGCTCTATATGTTC 59.138 38.462 0.00 0.00 0.00 3.18
142 151 6.746120 ACTAATTTCCGACGCTCTATATGTT 58.254 36.000 0.00 0.00 0.00 2.71
144 153 7.169308 ACAAACTAATTTCCGACGCTCTATATG 59.831 37.037 0.00 0.00 0.00 1.78
145 154 7.169308 CACAAACTAATTTCCGACGCTCTATAT 59.831 37.037 0.00 0.00 0.00 0.86
146 155 6.474427 CACAAACTAATTTCCGACGCTCTATA 59.526 38.462 0.00 0.00 0.00 1.31
172 181 5.548181 AGCATGCTTCTCATCTTAGATGA 57.452 39.130 21.82 21.82 31.79 2.92
223 232 5.901552 ACAACCTTTGTTACAATTGGACAG 58.098 37.500 19.21 12.37 42.22 3.51
337 347 9.379791 ACTAGTGTAAAAAGCGCTCTTATATTT 57.620 29.630 12.06 2.98 31.02 1.40
377 388 7.534085 TGCTCAACTTCCATAATTAACTACG 57.466 36.000 0.00 0.00 0.00 3.51
389 483 1.304381 GGGCCATGCTCAACTTCCA 60.304 57.895 4.39 0.00 0.00 3.53
418 552 7.276658 CGTAATAAAATGCAGCCATAAAACCAA 59.723 33.333 0.00 0.00 0.00 3.67
510 648 5.812652 TGTTGTGATTTCAACCTTTACGTC 58.187 37.500 0.00 0.00 44.66 4.34
534 672 3.055891 TCAATGATCCGTTCTTGCTCTCA 60.056 43.478 0.00 0.00 0.00 3.27
547 685 5.566230 GCCTCAATAATTGGCTCAATGATCC 60.566 44.000 0.00 0.00 43.05 3.36
796 939 8.383318 TGAAGTAGATTGTTTTCTTCTTCTGG 57.617 34.615 16.55 0.00 44.26 3.86
974 1296 3.131933 ACTGCAAGAGCTTCAGTCGATAT 59.868 43.478 0.00 0.00 42.74 1.63
1129 1456 4.082245 CCAGCACCAACCAAATTAACTAGG 60.082 45.833 0.00 0.00 0.00 3.02
1130 1457 4.618227 GCCAGCACCAACCAAATTAACTAG 60.618 45.833 0.00 0.00 0.00 2.57
1303 1636 6.201806 GCTGTGAGATGTTGTGGATAAGATAC 59.798 42.308 0.00 0.00 0.00 2.24
1368 1712 3.565764 TCACCAACTCATCCATCCATC 57.434 47.619 0.00 0.00 0.00 3.51
1472 5560 2.177888 AGGGGAAAGAGAGGCAAAAGTT 59.822 45.455 0.00 0.00 0.00 2.66
1473 5561 1.783365 AGGGGAAAGAGAGGCAAAAGT 59.217 47.619 0.00 0.00 0.00 2.66
1474 5562 2.165998 CAGGGGAAAGAGAGGCAAAAG 58.834 52.381 0.00 0.00 0.00 2.27
1477 5565 1.149101 AACAGGGGAAAGAGAGGCAA 58.851 50.000 0.00 0.00 0.00 4.52
1478 5566 1.149101 AAACAGGGGAAAGAGAGGCA 58.851 50.000 0.00 0.00 0.00 4.75
1527 5621 3.589288 AGGTGAGGGTTCAAGCTAGATTT 59.411 43.478 0.00 0.00 34.49 2.17
1541 5636 9.745018 ACATATAAATCATAATTCAGGTGAGGG 57.255 33.333 0.00 0.00 0.00 4.30
1564 5663 1.271054 GCTGTGAGTGTGAGGGAACAT 60.271 52.381 0.00 0.00 31.49 2.71
1713 10071 1.209275 CGCGGTCGACATTGATCCTC 61.209 60.000 18.91 0.00 38.10 3.71
1752 10110 1.450312 GATGGTGAAGCGGGACTGG 60.450 63.158 0.00 0.00 0.00 4.00
1776 10134 3.223674 ACGAAGTGGAAGATGGGTTTT 57.776 42.857 0.00 0.00 42.51 2.43
1931 10289 0.391130 CGTCGGCTGGGAAGATTTCA 60.391 55.000 0.00 0.00 0.00 2.69
1938 10296 1.254975 TTGATCTCGTCGGCTGGGAA 61.255 55.000 0.00 0.00 0.00 3.97
2084 10451 0.472044 TGTCACTTACAGCAAGGCCA 59.528 50.000 5.01 0.00 38.70 5.36
2105 10472 6.512297 TGTTCCAAAAACCTGAAAGAATAGC 58.488 36.000 0.00 0.00 34.07 2.97
2106 10473 7.599998 CCATGTTCCAAAAACCTGAAAGAATAG 59.400 37.037 0.00 0.00 34.07 1.73
2121 10639 0.893270 CCGTGGAGCCATGTTCCAAA 60.893 55.000 15.53 0.00 44.05 3.28
2122 10640 1.303236 CCGTGGAGCCATGTTCCAA 60.303 57.895 15.53 1.20 44.05 3.53
2127 10645 1.303317 GGTTTCCGTGGAGCCATGT 60.303 57.895 7.87 0.00 0.00 3.21
2128 10646 2.046285 GGGTTTCCGTGGAGCCATG 61.046 63.158 11.86 1.64 33.69 3.66
2130 10648 2.002018 AAAGGGTTTCCGTGGAGCCA 62.002 55.000 11.86 0.00 38.33 4.75
2131 10649 1.228459 AAAGGGTTTCCGTGGAGCC 60.228 57.895 3.76 3.76 38.33 4.70
2132 10650 0.822121 ACAAAGGGTTTCCGTGGAGC 60.822 55.000 0.00 0.00 38.33 4.70
2133 10651 0.951558 CACAAAGGGTTTCCGTGGAG 59.048 55.000 0.00 0.00 38.33 3.86
2134 10652 0.547075 TCACAAAGGGTTTCCGTGGA 59.453 50.000 0.00 0.00 38.33 4.02
2135 10653 1.394618 TTCACAAAGGGTTTCCGTGG 58.605 50.000 0.00 0.00 38.33 4.94
2136 10654 2.288152 CCATTCACAAAGGGTTTCCGTG 60.288 50.000 0.00 0.00 38.33 4.94
2137 10655 1.960689 CCATTCACAAAGGGTTTCCGT 59.039 47.619 0.00 0.00 38.33 4.69
2138 10656 2.723124 CCATTCACAAAGGGTTTCCG 57.277 50.000 0.00 0.00 38.33 4.30
2144 10662 4.461081 TCCGAATTTACCATTCACAAAGGG 59.539 41.667 0.00 0.00 42.15 3.95
2145 10663 5.637006 TCCGAATTTACCATTCACAAAGG 57.363 39.130 0.00 0.00 0.00 3.11
2146 10664 7.938563 TTTTCCGAATTTACCATTCACAAAG 57.061 32.000 0.00 0.00 0.00 2.77
2214 10732 6.071672 AGCAAGCATACAGATCGACTATGTAT 60.072 38.462 11.32 11.32 39.99 2.29
2215 10733 5.241728 AGCAAGCATACAGATCGACTATGTA 59.758 40.000 8.21 8.21 34.17 2.29
2216 10734 4.038522 AGCAAGCATACAGATCGACTATGT 59.961 41.667 0.00 0.00 0.00 2.29
2217 10735 4.554292 AGCAAGCATACAGATCGACTATG 58.446 43.478 0.00 0.00 0.00 2.23
2218 10736 4.614764 CGAGCAAGCATACAGATCGACTAT 60.615 45.833 0.00 0.00 0.00 2.12
2219 10737 3.304057 CGAGCAAGCATACAGATCGACTA 60.304 47.826 0.00 0.00 0.00 2.59
2220 10738 2.542618 CGAGCAAGCATACAGATCGACT 60.543 50.000 0.00 0.00 0.00 4.18
2221 10739 1.783711 CGAGCAAGCATACAGATCGAC 59.216 52.381 0.00 0.00 0.00 4.20
2222 10740 1.865655 GCGAGCAAGCATACAGATCGA 60.866 52.381 3.38 0.00 37.05 3.59
2223 10741 0.506080 GCGAGCAAGCATACAGATCG 59.494 55.000 0.00 0.00 37.05 3.69
2224 10742 1.575244 TGCGAGCAAGCATACAGATC 58.425 50.000 1.83 0.00 42.92 2.75
2225 10743 3.766644 TGCGAGCAAGCATACAGAT 57.233 47.368 1.83 0.00 42.92 2.90
2238 10756 8.229671 TTTCTTCGTGAAACTTCGTATGCGAG 62.230 42.308 5.91 3.75 42.49 5.03
2239 10757 2.334971 TCGTGAAACTTCGTATGCGA 57.665 45.000 0.30 0.30 46.36 5.10
2240 10758 2.659757 TCTTCGTGAAACTTCGTATGCG 59.340 45.455 0.00 0.00 34.94 4.73
2241 10759 4.640805 TTCTTCGTGAAACTTCGTATGC 57.359 40.909 0.00 0.00 31.75 3.14
2242 10760 8.218441 TGTTATTTCTTCGTGAAACTTCGTATG 58.782 33.333 8.09 0.00 46.08 2.39
2243 10761 8.301730 TGTTATTTCTTCGTGAAACTTCGTAT 57.698 30.769 8.09 0.00 46.08 3.06
2244 10762 7.697352 TGTTATTTCTTCGTGAAACTTCGTA 57.303 32.000 8.09 0.00 46.08 3.43
2245 10763 6.592798 TGTTATTTCTTCGTGAAACTTCGT 57.407 33.333 8.09 0.00 46.08 3.85
2246 10764 6.736853 GGATGTTATTTCTTCGTGAAACTTCG 59.263 38.462 8.09 0.00 46.08 3.79
2247 10765 7.581476 TGGATGTTATTTCTTCGTGAAACTTC 58.419 34.615 8.09 5.58 46.08 3.01
2248 10766 7.504924 TGGATGTTATTTCTTCGTGAAACTT 57.495 32.000 8.09 0.00 46.08 2.66
2249 10767 7.390440 TCATGGATGTTATTTCTTCGTGAAACT 59.610 33.333 8.09 2.95 46.08 2.66
2250 10768 7.526608 TCATGGATGTTATTTCTTCGTGAAAC 58.473 34.615 8.09 0.07 46.08 2.78
2252 10770 7.864108 ATCATGGATGTTATTTCTTCGTGAA 57.136 32.000 0.00 0.00 0.00 3.18
2253 10771 8.956533 TTATCATGGATGTTATTTCTTCGTGA 57.043 30.769 0.00 0.00 0.00 4.35
2258 10776 9.768662 GCCATTTTATCATGGATGTTATTTCTT 57.231 29.630 3.80 0.00 46.18 2.52
2259 10777 8.926374 TGCCATTTTATCATGGATGTTATTTCT 58.074 29.630 3.80 0.00 46.18 2.52
2260 10778 9.545105 TTGCCATTTTATCATGGATGTTATTTC 57.455 29.630 3.80 0.00 46.18 2.17
2261 10779 9.902684 TTTGCCATTTTATCATGGATGTTATTT 57.097 25.926 3.80 0.00 46.18 1.40
2262 10780 9.902684 TTTTGCCATTTTATCATGGATGTTATT 57.097 25.926 3.80 0.00 46.18 1.40
2264 10782 9.545105 GATTTTGCCATTTTATCATGGATGTTA 57.455 29.630 3.80 0.00 46.18 2.41
2265 10783 7.225145 CGATTTTGCCATTTTATCATGGATGTT 59.775 33.333 3.80 0.00 46.18 2.71
2266 10784 6.702723 CGATTTTGCCATTTTATCATGGATGT 59.297 34.615 3.80 0.00 46.18 3.06
2267 10785 6.924612 TCGATTTTGCCATTTTATCATGGATG 59.075 34.615 3.80 0.00 46.18 3.51
2268 10786 7.053316 TCGATTTTGCCATTTTATCATGGAT 57.947 32.000 3.80 0.00 46.18 3.41
2269 10787 6.462552 TCGATTTTGCCATTTTATCATGGA 57.537 33.333 3.80 0.00 46.18 3.41
2270 10788 6.347079 GCATCGATTTTGCCATTTTATCATGG 60.347 38.462 0.00 0.00 46.04 3.66
2271 10789 6.422701 AGCATCGATTTTGCCATTTTATCATG 59.577 34.615 5.88 0.00 41.06 3.07
2272 10790 6.518493 AGCATCGATTTTGCCATTTTATCAT 58.482 32.000 5.88 0.00 41.06 2.45
2273 10791 5.904941 AGCATCGATTTTGCCATTTTATCA 58.095 33.333 5.88 0.00 41.06 2.15
2274 10792 9.624697 TTATAGCATCGATTTTGCCATTTTATC 57.375 29.630 5.88 0.00 41.06 1.75
2275 10793 9.979578 TTTATAGCATCGATTTTGCCATTTTAT 57.020 25.926 5.88 0.82 41.06 1.40
2276 10794 9.809096 TTTTATAGCATCGATTTTGCCATTTTA 57.191 25.926 5.88 0.00 41.06 1.52
2277 10795 8.715191 TTTTATAGCATCGATTTTGCCATTTT 57.285 26.923 5.88 0.00 41.06 1.82
2278 10796 8.715191 TTTTTATAGCATCGATTTTGCCATTT 57.285 26.923 5.88 0.00 41.06 2.32
2306 10824 8.647143 AAATCTAACTGTTCAACCAAACAATG 57.353 30.769 0.00 0.00 38.60 2.82
2307 10825 7.647715 CGAAATCTAACTGTTCAACCAAACAAT 59.352 33.333 0.00 0.00 38.60 2.71
2308 10826 6.970043 CGAAATCTAACTGTTCAACCAAACAA 59.030 34.615 0.00 0.00 38.60 2.83
2309 10827 6.316640 TCGAAATCTAACTGTTCAACCAAACA 59.683 34.615 0.00 0.00 37.56 2.83
2310 10828 6.721321 TCGAAATCTAACTGTTCAACCAAAC 58.279 36.000 0.00 0.00 0.00 2.93
2311 10829 6.928979 TCGAAATCTAACTGTTCAACCAAA 57.071 33.333 0.00 0.00 0.00 3.28
2312 10830 7.012894 ACAATCGAAATCTAACTGTTCAACCAA 59.987 33.333 0.00 0.00 0.00 3.67
2313 10831 6.485313 ACAATCGAAATCTAACTGTTCAACCA 59.515 34.615 0.00 0.00 0.00 3.67
2314 10832 6.899114 ACAATCGAAATCTAACTGTTCAACC 58.101 36.000 0.00 0.00 0.00 3.77
2315 10833 9.478019 CATACAATCGAAATCTAACTGTTCAAC 57.522 33.333 0.00 0.00 0.00 3.18
2316 10834 9.214957 ACATACAATCGAAATCTAACTGTTCAA 57.785 29.630 0.00 0.00 0.00 2.69
2317 10835 8.771920 ACATACAATCGAAATCTAACTGTTCA 57.228 30.769 0.00 0.00 0.00 3.18
2318 10836 9.690434 GAACATACAATCGAAATCTAACTGTTC 57.310 33.333 0.00 0.00 33.33 3.18
2319 10837 9.436957 AGAACATACAATCGAAATCTAACTGTT 57.563 29.630 0.00 0.00 0.00 3.16
2320 10838 9.436957 AAGAACATACAATCGAAATCTAACTGT 57.563 29.630 0.00 0.00 0.00 3.55
2321 10839 9.907576 GAAGAACATACAATCGAAATCTAACTG 57.092 33.333 0.00 0.00 0.00 3.16
2322 10840 9.653287 TGAAGAACATACAATCGAAATCTAACT 57.347 29.630 0.00 0.00 0.00 2.24
2323 10841 9.690434 GTGAAGAACATACAATCGAAATCTAAC 57.310 33.333 0.00 0.00 0.00 2.34
2324 10842 8.879759 GGTGAAGAACATACAATCGAAATCTAA 58.120 33.333 0.00 0.00 0.00 2.10
2325 10843 7.222031 CGGTGAAGAACATACAATCGAAATCTA 59.778 37.037 0.00 0.00 0.00 1.98
2326 10844 6.036083 CGGTGAAGAACATACAATCGAAATCT 59.964 38.462 0.00 0.00 0.00 2.40
2327 10845 6.035650 TCGGTGAAGAACATACAATCGAAATC 59.964 38.462 0.00 0.00 0.00 2.17
2328 10846 5.872617 TCGGTGAAGAACATACAATCGAAAT 59.127 36.000 0.00 0.00 0.00 2.17
2329 10847 5.231702 TCGGTGAAGAACATACAATCGAAA 58.768 37.500 0.00 0.00 0.00 3.46
2330 10848 4.811908 TCGGTGAAGAACATACAATCGAA 58.188 39.130 0.00 0.00 0.00 3.71
2331 10849 4.157105 TCTCGGTGAAGAACATACAATCGA 59.843 41.667 0.00 0.00 0.00 3.59
2332 10850 4.421058 TCTCGGTGAAGAACATACAATCG 58.579 43.478 0.00 0.00 0.00 3.34
2333 10851 6.910536 ATTCTCGGTGAAGAACATACAATC 57.089 37.500 0.00 0.00 38.06 2.67
2334 10852 6.761714 GGTATTCTCGGTGAAGAACATACAAT 59.238 38.462 0.00 0.00 38.06 2.71
2335 10853 6.103997 GGTATTCTCGGTGAAGAACATACAA 58.896 40.000 0.00 0.00 38.06 2.41
2336 10854 5.186215 TGGTATTCTCGGTGAAGAACATACA 59.814 40.000 1.41 0.00 38.50 2.29
2337 10855 5.519206 GTGGTATTCTCGGTGAAGAACATAC 59.481 44.000 8.21 1.49 44.14 2.39
2338 10856 5.657474 GTGGTATTCTCGGTGAAGAACATA 58.343 41.667 8.21 0.00 44.14 2.29
2339 10857 4.504858 GTGGTATTCTCGGTGAAGAACAT 58.495 43.478 8.21 0.00 44.14 2.71
2340 10858 3.613193 CGTGGTATTCTCGGTGAAGAACA 60.613 47.826 1.41 1.41 40.78 3.18
2341 10859 2.921754 CGTGGTATTCTCGGTGAAGAAC 59.078 50.000 0.00 0.00 38.06 3.01
2342 10860 2.094390 CCGTGGTATTCTCGGTGAAGAA 60.094 50.000 0.00 0.00 39.49 2.52
2343 10861 1.475280 CCGTGGTATTCTCGGTGAAGA 59.525 52.381 0.00 0.00 38.18 2.87
2344 10862 1.470979 CCCGTGGTATTCTCGGTGAAG 60.471 57.143 0.00 0.00 42.30 3.02
2345 10863 0.533491 CCCGTGGTATTCTCGGTGAA 59.467 55.000 0.00 0.00 42.30 3.18
2346 10864 0.612732 ACCCGTGGTATTCTCGGTGA 60.613 55.000 0.00 0.00 42.30 4.02
2347 10865 1.105457 TACCCGTGGTATTCTCGGTG 58.895 55.000 0.00 0.00 42.30 4.94
2348 10866 2.077687 ATACCCGTGGTATTCTCGGT 57.922 50.000 9.13 0.00 45.54 4.69
2362 10880 4.451900 AGTTTCATGACGGAATGATACCC 58.548 43.478 14.87 0.00 38.52 3.69
2363 10881 5.584649 TGAAGTTTCATGACGGAATGATACC 59.415 40.000 14.87 6.24 38.52 2.73
2364 10882 6.662414 TGAAGTTTCATGACGGAATGATAC 57.338 37.500 12.23 12.23 38.23 2.24
2365 10883 7.174080 TGTTTGAAGTTTCATGACGGAATGATA 59.826 33.333 0.00 0.00 36.48 2.15
2366 10884 6.016360 TGTTTGAAGTTTCATGACGGAATGAT 60.016 34.615 0.00 0.00 36.48 2.45
2367 10885 5.298026 TGTTTGAAGTTTCATGACGGAATGA 59.702 36.000 0.00 0.00 37.00 2.57
2368 10886 5.399301 GTGTTTGAAGTTTCATGACGGAATG 59.601 40.000 0.00 0.00 37.00 2.67
2369 10887 5.519722 GTGTTTGAAGTTTCATGACGGAAT 58.480 37.500 0.00 0.00 37.00 3.01
2370 10888 4.495019 CGTGTTTGAAGTTTCATGACGGAA 60.495 41.667 0.00 0.00 37.00 4.30
2371 10889 3.001838 CGTGTTTGAAGTTTCATGACGGA 59.998 43.478 0.00 0.00 37.00 4.69
2372 10890 3.001838 TCGTGTTTGAAGTTTCATGACGG 59.998 43.478 0.00 6.96 37.00 4.79
2373 10891 4.190304 TCGTGTTTGAAGTTTCATGACG 57.810 40.909 0.00 11.49 37.00 4.35
2374 10892 5.156804 ACTCGTGTTTGAAGTTTCATGAC 57.843 39.130 0.00 0.00 37.00 3.06
2375 10893 5.050363 GCTACTCGTGTTTGAAGTTTCATGA 60.050 40.000 0.00 0.00 37.00 3.07
2376 10894 5.050091 AGCTACTCGTGTTTGAAGTTTCATG 60.050 40.000 0.00 0.00 37.00 3.07
2377 10895 5.057149 AGCTACTCGTGTTTGAAGTTTCAT 58.943 37.500 0.00 0.00 37.00 2.57
2378 10896 4.439057 AGCTACTCGTGTTTGAAGTTTCA 58.561 39.130 0.00 0.00 34.92 2.69
2379 10897 5.919141 TCTAGCTACTCGTGTTTGAAGTTTC 59.081 40.000 0.00 0.00 0.00 2.78
2380 10898 5.839621 TCTAGCTACTCGTGTTTGAAGTTT 58.160 37.500 0.00 0.00 0.00 2.66
2381 10899 5.449107 TCTAGCTACTCGTGTTTGAAGTT 57.551 39.130 0.00 0.00 0.00 2.66
2382 10900 5.449107 TTCTAGCTACTCGTGTTTGAAGT 57.551 39.130 0.00 0.00 0.00 3.01
2383 10901 5.289675 CCATTCTAGCTACTCGTGTTTGAAG 59.710 44.000 0.00 0.00 0.00 3.02
2384 10902 5.168569 CCATTCTAGCTACTCGTGTTTGAA 58.831 41.667 0.00 0.00 0.00 2.69
2385 10903 4.219944 ACCATTCTAGCTACTCGTGTTTGA 59.780 41.667 0.00 0.00 0.00 2.69
2386 10904 4.495422 ACCATTCTAGCTACTCGTGTTTG 58.505 43.478 0.00 0.00 0.00 2.93
2387 10905 4.674623 CGACCATTCTAGCTACTCGTGTTT 60.675 45.833 0.00 0.00 0.00 2.83
2388 10906 3.181499 CGACCATTCTAGCTACTCGTGTT 60.181 47.826 0.00 0.00 0.00 3.32
2389 10907 2.355132 CGACCATTCTAGCTACTCGTGT 59.645 50.000 0.00 0.00 0.00 4.49
2390 10908 2.287069 CCGACCATTCTAGCTACTCGTG 60.287 54.545 0.00 0.00 0.00 4.35
2391 10909 1.948145 CCGACCATTCTAGCTACTCGT 59.052 52.381 0.00 0.00 0.00 4.18
2392 10910 1.335142 GCCGACCATTCTAGCTACTCG 60.335 57.143 0.00 0.00 0.00 4.18
2393 10911 1.000052 GGCCGACCATTCTAGCTACTC 60.000 57.143 0.00 0.00 35.26 2.59
2394 10912 1.041437 GGCCGACCATTCTAGCTACT 58.959 55.000 0.00 0.00 35.26 2.57
2395 10913 0.750850 TGGCCGACCATTCTAGCTAC 59.249 55.000 0.00 0.00 42.67 3.58
2396 10914 3.217321 TGGCCGACCATTCTAGCTA 57.783 52.632 0.00 0.00 42.67 3.32
2397 10915 4.050313 TGGCCGACCATTCTAGCT 57.950 55.556 0.00 0.00 42.67 3.32
2406 10924 1.092348 GGTATCAAAGTTGGCCGACC 58.908 55.000 20.18 2.01 0.00 4.79
2407 10925 1.092348 GGGTATCAAAGTTGGCCGAC 58.908 55.000 16.08 16.08 0.00 4.79
2408 10926 0.034863 GGGGTATCAAAGTTGGCCGA 60.035 55.000 0.00 0.00 0.00 5.54
2409 10927 0.322997 TGGGGTATCAAAGTTGGCCG 60.323 55.000 0.00 0.00 0.00 6.13
2410 10928 1.931635 TTGGGGTATCAAAGTTGGCC 58.068 50.000 0.00 0.00 0.00 5.36
2411 10929 4.551702 ATTTTGGGGTATCAAAGTTGGC 57.448 40.909 0.00 0.00 37.82 4.52
2412 10930 6.529220 TGAAATTTTGGGGTATCAAAGTTGG 58.471 36.000 0.00 0.00 36.91 3.77
2413 10931 7.441017 TCTGAAATTTTGGGGTATCAAAGTTG 58.559 34.615 0.00 0.00 36.91 3.16
2414 10932 7.610580 TCTGAAATTTTGGGGTATCAAAGTT 57.389 32.000 0.00 0.00 37.90 2.66
2415 10933 7.610580 TTCTGAAATTTTGGGGTATCAAAGT 57.389 32.000 0.00 0.00 37.82 2.66
2416 10934 9.506018 AAATTCTGAAATTTTGGGGTATCAAAG 57.494 29.630 0.00 0.00 41.27 2.77
2459 10977 9.835389 TCATGTGAAAGGAAAATCAAGAAAAAT 57.165 25.926 0.00 0.00 0.00 1.82
2460 10978 9.316730 CTCATGTGAAAGGAAAATCAAGAAAAA 57.683 29.630 0.00 0.00 0.00 1.94
2461 10979 8.477256 ACTCATGTGAAAGGAAAATCAAGAAAA 58.523 29.630 0.94 0.00 0.00 2.29
2462 10980 7.922278 CACTCATGTGAAAGGAAAATCAAGAAA 59.078 33.333 0.94 0.00 46.55 2.52
2463 10981 7.428020 CACTCATGTGAAAGGAAAATCAAGAA 58.572 34.615 0.94 0.00 46.55 2.52
2464 10982 6.515531 GCACTCATGTGAAAGGAAAATCAAGA 60.516 38.462 0.94 0.00 46.55 3.02
2465 10983 5.632347 GCACTCATGTGAAAGGAAAATCAAG 59.368 40.000 0.94 0.00 46.55 3.02
2466 10984 5.531634 GCACTCATGTGAAAGGAAAATCAA 58.468 37.500 0.94 0.00 46.55 2.57
2467 10985 4.320421 CGCACTCATGTGAAAGGAAAATCA 60.320 41.667 0.94 0.00 46.55 2.57
2468 10986 4.161333 CGCACTCATGTGAAAGGAAAATC 58.839 43.478 0.94 0.00 46.55 2.17
2469 10987 3.612479 GCGCACTCATGTGAAAGGAAAAT 60.612 43.478 0.30 0.00 46.55 1.82
2470 10988 2.287547 GCGCACTCATGTGAAAGGAAAA 60.288 45.455 0.30 0.00 46.55 2.29
2471 10989 1.266718 GCGCACTCATGTGAAAGGAAA 59.733 47.619 0.30 0.00 46.55 3.13
2472 10990 0.874390 GCGCACTCATGTGAAAGGAA 59.126 50.000 0.30 0.00 46.55 3.36
2473 10991 0.035317 AGCGCACTCATGTGAAAGGA 59.965 50.000 11.47 0.00 46.55 3.36
2474 10992 0.877071 AAGCGCACTCATGTGAAAGG 59.123 50.000 11.47 0.00 46.55 3.11
2475 10993 1.532437 TCAAGCGCACTCATGTGAAAG 59.468 47.619 11.47 0.00 46.55 2.62
2476 10994 1.592064 TCAAGCGCACTCATGTGAAA 58.408 45.000 11.47 0.00 46.55 2.69
2477 10995 1.592064 TTCAAGCGCACTCATGTGAA 58.408 45.000 11.47 4.54 46.55 3.18
2478 10996 1.264020 GTTTCAAGCGCACTCATGTGA 59.736 47.619 11.47 0.00 46.55 3.58
2479 10997 1.002576 TGTTTCAAGCGCACTCATGTG 60.003 47.619 11.47 0.00 46.37 3.21
2480 10998 1.308047 TGTTTCAAGCGCACTCATGT 58.692 45.000 11.47 0.00 0.00 3.21
2481 10999 2.404265 TTGTTTCAAGCGCACTCATG 57.596 45.000 11.47 0.00 0.00 3.07
2482 11000 3.243501 ACAATTGTTTCAAGCGCACTCAT 60.244 39.130 11.47 0.00 0.00 2.90
2483 11001 2.098934 ACAATTGTTTCAAGCGCACTCA 59.901 40.909 11.47 0.00 0.00 3.41
2484 11002 2.731217 ACAATTGTTTCAAGCGCACTC 58.269 42.857 11.47 0.00 0.00 3.51
2485 11003 2.869233 ACAATTGTTTCAAGCGCACT 57.131 40.000 11.47 0.00 0.00 4.40
2486 11004 2.857152 TGAACAATTGTTTCAAGCGCAC 59.143 40.909 24.02 9.21 38.56 5.34
2487 11005 2.857152 GTGAACAATTGTTTCAAGCGCA 59.143 40.909 24.02 12.93 38.56 6.09
2488 11006 2.218530 GGTGAACAATTGTTTCAAGCGC 59.781 45.455 24.02 16.38 38.56 5.92
2489 11007 3.705604 AGGTGAACAATTGTTTCAAGCG 58.294 40.909 24.02 0.00 38.56 4.68
2490 11008 5.351189 ACAAAGGTGAACAATTGTTTCAAGC 59.649 36.000 24.02 19.96 38.56 4.01
2491 11009 6.966435 ACAAAGGTGAACAATTGTTTCAAG 57.034 33.333 24.02 12.95 38.56 3.02
2492 11010 7.607250 AGTACAAAGGTGAACAATTGTTTCAA 58.393 30.769 24.02 11.04 38.56 2.69
2493 11011 7.164230 AGTACAAAGGTGAACAATTGTTTCA 57.836 32.000 24.02 18.87 38.56 2.69
2494 11012 8.474006 AAAGTACAAAGGTGAACAATTGTTTC 57.526 30.769 24.02 18.63 38.56 2.78
2495 11013 7.274686 CGAAAGTACAAAGGTGAACAATTGTTT 59.725 33.333 24.02 6.35 38.56 2.83
2496 11014 6.750039 CGAAAGTACAAAGGTGAACAATTGTT 59.250 34.615 23.49 23.49 41.64 2.83
2497 11015 6.262601 CGAAAGTACAAAGGTGAACAATTGT 58.737 36.000 4.92 4.92 39.23 2.71
2498 11016 5.685511 CCGAAAGTACAAAGGTGAACAATTG 59.314 40.000 3.24 3.24 0.00 2.32
2499 11017 5.735070 GCCGAAAGTACAAAGGTGAACAATT 60.735 40.000 0.00 0.00 0.00 2.32
2500 11018 4.261447 GCCGAAAGTACAAAGGTGAACAAT 60.261 41.667 0.00 0.00 0.00 2.71
2501 11019 3.065648 GCCGAAAGTACAAAGGTGAACAA 59.934 43.478 0.00 0.00 0.00 2.83
2502 11020 2.614983 GCCGAAAGTACAAAGGTGAACA 59.385 45.455 0.00 0.00 0.00 3.18
2503 11021 2.876550 AGCCGAAAGTACAAAGGTGAAC 59.123 45.455 0.00 0.00 0.00 3.18
2504 11022 3.202829 AGCCGAAAGTACAAAGGTGAA 57.797 42.857 0.00 0.00 0.00 3.18
2505 11023 2.922740 AGCCGAAAGTACAAAGGTGA 57.077 45.000 0.00 0.00 0.00 4.02
2506 11024 4.092968 GTCATAGCCGAAAGTACAAAGGTG 59.907 45.833 0.00 0.00 0.00 4.00
2507 11025 4.251268 GTCATAGCCGAAAGTACAAAGGT 58.749 43.478 0.00 0.00 0.00 3.50
2508 11026 3.621715 GGTCATAGCCGAAAGTACAAAGG 59.378 47.826 0.00 0.00 0.00 3.11
2509 11027 4.250464 TGGTCATAGCCGAAAGTACAAAG 58.750 43.478 0.00 0.00 0.00 2.77
2510 11028 4.274602 TGGTCATAGCCGAAAGTACAAA 57.725 40.909 0.00 0.00 0.00 2.83
2511 11029 3.965379 TGGTCATAGCCGAAAGTACAA 57.035 42.857 0.00 0.00 0.00 2.41
2512 11030 3.512329 TCTTGGTCATAGCCGAAAGTACA 59.488 43.478 0.00 0.00 0.00 2.90
2514 11032 3.767673 AGTCTTGGTCATAGCCGAAAGTA 59.232 43.478 0.00 0.00 0.00 2.24
2516 11034 3.252974 AGTCTTGGTCATAGCCGAAAG 57.747 47.619 0.00 0.00 0.00 2.62
2518 11036 4.404394 TGATTAGTCTTGGTCATAGCCGAA 59.596 41.667 0.00 0.00 0.00 4.30
2520 11038 4.051922 GTGATTAGTCTTGGTCATAGCCG 58.948 47.826 0.00 0.00 0.00 5.52
2521 11039 5.053145 CAGTGATTAGTCTTGGTCATAGCC 58.947 45.833 0.00 0.00 0.00 3.93
2546 11064 1.000274 CATGGCCTGATCATGCATGTG 60.000 52.381 25.43 13.85 36.09 3.21
2547 11065 1.328279 CATGGCCTGATCATGCATGT 58.672 50.000 25.43 13.42 36.09 3.21
2640 11162 2.621998 GACAATGGCAGATTAGCATGCT 59.378 45.455 25.99 25.99 42.19 3.79
2646 11168 5.236282 AGATCGATGACAATGGCAGATTAG 58.764 41.667 0.54 0.00 0.00 1.73
2657 11179 3.365472 TCTCCCTGAAGATCGATGACAA 58.635 45.455 0.54 0.00 0.00 3.18
2685 11212 6.038356 CACATTTTTGGCAAGATGGAGTATC 58.962 40.000 21.80 0.00 30.25 2.24
2709 11241 2.550606 TCAATGTGCTTCGGTAACCAAC 59.449 45.455 0.00 0.00 0.00 3.77
2713 11245 1.467342 GGGTCAATGTGCTTCGGTAAC 59.533 52.381 0.00 0.00 0.00 2.50
2725 11310 1.270252 GGTTGCAAGGTTGGGTCAATG 60.270 52.381 0.00 0.00 0.00 2.82
2727 11312 1.045911 GGGTTGCAAGGTTGGGTCAA 61.046 55.000 0.00 0.00 0.00 3.18
2732 11317 1.672898 CATGGGGTTGCAAGGTTGG 59.327 57.895 0.00 0.00 0.00 3.77
2733 11318 1.004679 GCATGGGGTTGCAAGGTTG 60.005 57.895 0.00 0.00 42.31 3.77
2896 11530 3.057806 CACGATCACCTGTGGCGTATATA 60.058 47.826 15.05 0.00 38.92 0.86
2898 11532 1.066454 CACGATCACCTGTGGCGTATA 59.934 52.381 15.05 0.00 38.92 1.47
3014 11648 6.436738 AGAAGGAGCAAGTGATCATCATAT 57.563 37.500 0.00 0.00 30.87 1.78
3060 11790 2.089980 CATCAGGCCATAGCATTAGCC 58.910 52.381 5.01 0.00 46.13 3.93
3061 11791 2.089980 CCATCAGGCCATAGCATTAGC 58.910 52.381 5.01 0.00 42.56 3.09
3360 12095 2.946341 GCCAGGTGCTCTACTCTACTCA 60.946 54.545 0.00 0.00 36.87 3.41
3375 12111 0.915364 GGGATGAAGAAGAGCCAGGT 59.085 55.000 0.00 0.00 0.00 4.00
3407 12143 7.097192 AGAGGTAATACATGTGTGTTGTAGTG 58.903 38.462 9.11 0.00 39.77 2.74
3453 12231 2.732619 GGAGTCCTAAGGGGCGTGG 61.733 68.421 0.41 0.00 43.12 4.94
3456 12234 3.537874 CCGGAGTCCTAAGGGGCG 61.538 72.222 7.77 0.00 43.12 6.13
3460 12238 2.108168 TCATGAACCGGAGTCCTAAGG 58.892 52.381 9.46 3.67 0.00 2.69
3473 12253 9.185192 CAACCTTCTTCTGTTTATTTCATGAAC 57.815 33.333 7.89 0.00 0.00 3.18
3479 12259 6.073222 TCGAGCAACCTTCTTCTGTTTATTTC 60.073 38.462 0.00 0.00 0.00 2.17
3494 12274 2.097466 CCGCAAATTAATCGAGCAACCT 59.903 45.455 0.00 0.00 0.00 3.50
3524 12304 9.930693 TGGGTACATAAATTTTATGGTTTTCAC 57.069 29.630 25.41 15.11 0.00 3.18
3553 12729 8.304138 GCGAACGAACTATGTTGAAATAAATTG 58.696 33.333 0.00 0.00 0.00 2.32
3554 12730 7.483691 GGCGAACGAACTATGTTGAAATAAATT 59.516 33.333 0.00 0.00 0.00 1.82
3564 12740 3.581024 TGTAGGCGAACGAACTATGTT 57.419 42.857 0.00 0.00 0.00 2.71
3568 12744 2.098607 CCAGATGTAGGCGAACGAACTA 59.901 50.000 0.00 0.00 0.00 2.24
3569 12745 1.135083 CCAGATGTAGGCGAACGAACT 60.135 52.381 0.00 0.00 0.00 3.01
3570 12746 1.278238 CCAGATGTAGGCGAACGAAC 58.722 55.000 0.00 0.00 0.00 3.95
3571 12747 0.174845 CCCAGATGTAGGCGAACGAA 59.825 55.000 0.00 0.00 0.00 3.85
4018 13195 4.220821 ACGCTTCTTCTAGTCAAAGGATGA 59.779 41.667 0.00 0.00 35.05 2.92
4051 13228 2.286772 GCTGTCCAGGTTTTGTAACACG 60.287 50.000 0.00 0.00 35.92 4.49
4060 13237 5.189736 TGAATAGTATCAGCTGTCCAGGTTT 59.810 40.000 14.67 1.09 36.98 3.27
4131 13308 7.974501 ACTCATCTTACAAAGTATACTCAACCG 59.025 37.037 5.70 0.00 0.00 4.44
4152 13329 5.363562 TGCTTGGATCTGATTGTACTCAT 57.636 39.130 0.00 0.00 0.00 2.90
4158 13335 7.669427 TGTAAAATTTGCTTGGATCTGATTGT 58.331 30.769 0.00 0.00 0.00 2.71
4318 13495 1.205417 CCACCCCATCAAAATGACAGC 59.795 52.381 0.00 0.00 34.61 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.