Multiple sequence alignment - TraesCS5D01G196200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G196200 chr5D 100.000 5253 0 0 1 5253 299812922 299818174 0.000000e+00 9701.0
1 TraesCS5D01G196200 chr5B 91.961 4677 232 69 47 4645 341053912 341058522 0.000000e+00 6421.0
2 TraesCS5D01G196200 chr5B 95.455 44 2 0 1 44 341053766 341053809 2.620000e-08 71.3
3 TraesCS5D01G196200 chr5A 96.997 2464 67 7 2423 4884 397148532 397150990 0.000000e+00 4133.0
4 TraesCS5D01G196200 chr5A 90.793 2346 133 33 22 2324 397146172 397148477 0.000000e+00 3059.0
5 TraesCS5D01G196200 chr5A 97.807 228 5 0 4906 5133 397153453 397153680 1.370000e-105 394.0
6 TraesCS5D01G196200 chr1A 89.971 349 15 9 1007 1355 543638599 543638927 2.910000e-117 433.0
7 TraesCS5D01G196200 chr6D 99.174 121 1 0 5133 5253 36204462 36204342 8.860000e-53 219.0
8 TraesCS5D01G196200 chr6D 99.174 121 1 0 5133 5253 86783040 86782920 8.860000e-53 219.0
9 TraesCS5D01G196200 chr4D 98.387 124 2 0 5130 5253 2128612 2128735 8.860000e-53 219.0
10 TraesCS5D01G196200 chr4D 98.387 124 2 0 5130 5253 20483502 20483625 8.860000e-53 219.0
11 TraesCS5D01G196200 chr4D 99.174 121 1 0 5133 5253 198599140 198599020 8.860000e-53 219.0
12 TraesCS5D01G196200 chr4D 99.174 121 1 0 5133 5253 259089445 259089325 8.860000e-53 219.0
13 TraesCS5D01G196200 chr1D 99.174 121 1 0 5133 5253 54938139 54938019 8.860000e-53 219.0
14 TraesCS5D01G196200 chr1D 98.387 124 2 0 5130 5253 402143921 402144044 8.860000e-53 219.0
15 TraesCS5D01G196200 chr1D 99.174 121 1 0 5133 5253 403371048 403370928 8.860000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G196200 chr5D 299812922 299818174 5252 False 9701.000000 9701 100.000 1 5253 1 chr5D.!!$F1 5252
1 TraesCS5D01G196200 chr5B 341053766 341058522 4756 False 3246.150000 6421 93.708 1 4645 2 chr5B.!!$F1 4644
2 TraesCS5D01G196200 chr5A 397146172 397153680 7508 False 2528.666667 4133 95.199 22 5133 3 chr5A.!!$F1 5111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 477 0.322636 AGAAGAGCTCGAAGGTCGGA 60.323 55.000 8.37 0.00 46.62 4.55 F
1140 1254 0.319986 TGTCTATGAACGGTTGCGCA 60.320 50.000 5.66 5.66 0.00 6.09 F
1644 1775 0.530870 GCGAGCCATCAAGAGGTACC 60.531 60.000 2.73 2.73 0.00 3.34 F
1890 2038 1.298413 CTATCCGCGACTGGTGACG 60.298 63.158 8.23 0.00 34.73 4.35 F
1892 2040 1.307355 TATCCGCGACTGGTGACGAA 61.307 55.000 8.23 0.00 33.54 3.85 F
2014 2163 1.453379 CGAGGAGGGCTCGGTTCTA 60.453 63.158 0.00 0.00 40.27 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2331 2482 1.014352 GTTTTGGCAGACAGTGACGT 58.986 50.000 0.0 0.00 36.69 4.34 R
2547 2699 1.302832 GTACCTGCTGCACCTTGCT 60.303 57.895 0.0 0.00 45.31 3.91 R
3506 3677 1.466167 CAAGTGCCAGAGAATGTTCGG 59.534 52.381 0.0 0.00 0.00 4.30 R
3507 3678 1.466167 CCAAGTGCCAGAGAATGTTCG 59.534 52.381 0.0 0.00 0.00 3.95 R
3815 4011 1.593006 GCATACATTCCACGGTCGAAG 59.407 52.381 0.0 0.00 0.00 3.79 R
4283 4480 0.822164 TCCCGCCTCTTACTAAGTGC 59.178 55.000 0.0 0.63 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 152 0.681733 ACATCAACTCTCGGTGCACT 59.318 50.000 17.98 0.00 0.00 4.40
66 167 1.298859 GCACTGTTGGCTAGTTCCCG 61.299 60.000 0.00 0.00 0.00 5.14
77 178 2.934553 GCTAGTTCCCGCTAACGATTTT 59.065 45.455 0.00 0.00 43.93 1.82
306 407 1.638133 CTGATCCAGCACGAGTTCAG 58.362 55.000 0.00 0.00 0.00 3.02
376 477 0.322636 AGAAGAGCTCGAAGGTCGGA 60.323 55.000 8.37 0.00 46.62 4.55
379 480 0.741915 AGAGCTCGAAGGTCGGAATC 59.258 55.000 8.37 0.00 46.62 2.52
382 483 1.939785 CTCGAAGGTCGGAATCGCG 60.940 63.158 0.00 0.00 40.88 5.87
647 755 6.578163 TGAACTTGATTCAGCATTCATTCA 57.422 33.333 5.63 0.00 42.62 2.57
656 764 5.106876 TCAGCATTCATTCATCTCTTCCA 57.893 39.130 0.00 0.00 0.00 3.53
663 771 5.455392 TCATTCATCTCTTCCATTTCCCA 57.545 39.130 0.00 0.00 0.00 4.37
664 772 5.195940 TCATTCATCTCTTCCATTTCCCAC 58.804 41.667 0.00 0.00 0.00 4.61
675 783 3.073650 TCCATTTCCCACCCCAAATTTTG 59.926 43.478 1.99 1.99 0.00 2.44
681 789 3.389656 TCCCACCCCAAATTTTGAACTTC 59.610 43.478 10.72 0.00 0.00 3.01
689 797 5.069781 CCCAAATTTTGAACTTCCTGTGGTA 59.930 40.000 10.72 0.00 0.00 3.25
699 809 5.470047 ACTTCCTGTGGTAGTCTACTTTG 57.530 43.478 9.85 0.00 26.81 2.77
705 815 3.194968 TGTGGTAGTCTACTTTGCTAGGC 59.805 47.826 9.85 0.00 0.00 3.93
716 830 8.361139 GTCTACTTTGCTAGGCAGAAGATATTA 58.639 37.037 15.51 3.86 40.61 0.98
735 849 8.223330 AGATATTAATGCCTGAATTGAGTCCTT 58.777 33.333 0.00 0.00 0.00 3.36
737 851 2.957402 TGCCTGAATTGAGTCCTTGT 57.043 45.000 0.00 0.00 0.00 3.16
744 858 1.632589 ATTGAGTCCTTGTTTGGGCC 58.367 50.000 0.00 0.00 30.64 5.80
778 892 1.573829 TTGAACTGCGATGAACGGCC 61.574 55.000 0.00 0.00 42.83 6.13
795 909 3.041940 CGACTGGTTGGCCACGTC 61.042 66.667 3.88 9.26 40.46 4.34
797 911 4.619227 ACTGGTTGGCCACGTCGG 62.619 66.667 3.88 5.62 40.46 4.79
802 916 1.890510 GTTGGCCACGTCGGAAAGT 60.891 57.895 3.88 0.00 36.56 2.66
812 926 0.653636 GTCGGAAAGTGTCGTGCAAA 59.346 50.000 0.00 0.00 0.00 3.68
817 931 1.061421 GAAAGTGTCGTGCAAACGTGA 59.939 47.619 0.00 0.00 0.00 4.35
838 952 4.758251 TGATCGGCTGGCCACGTG 62.758 66.667 14.67 9.08 35.37 4.49
902 1016 6.241207 GAGAATCGTCTCTTATCTCCTCTG 57.759 45.833 0.00 0.00 45.99 3.35
982 1096 3.369451 TCTCGCTCGAGATCATATCTTCG 59.631 47.826 18.75 6.00 45.26 3.79
1011 1125 0.667487 CGTCAGCAATGTCACCGTCT 60.667 55.000 0.00 0.00 0.00 4.18
1038 1152 4.772231 TACTCCGGCCGCCTCCTT 62.772 66.667 22.85 2.11 0.00 3.36
1040 1154 4.410400 CTCCGGCCGCCTCCTTTT 62.410 66.667 22.85 0.00 0.00 2.27
1047 1161 2.663196 CGCCTCCTTTTCTCCCGT 59.337 61.111 0.00 0.00 0.00 5.28
1134 1248 0.824759 GCTCCCTGTCTATGAACGGT 59.175 55.000 0.00 0.00 0.00 4.83
1140 1254 0.319986 TGTCTATGAACGGTTGCGCA 60.320 50.000 5.66 5.66 0.00 6.09
1183 1297 1.080772 GTGACCATGTGCGAGACGA 60.081 57.895 0.00 0.00 0.00 4.20
1312 1426 3.603158 TCGAGGTAGCAAAAGCACATA 57.397 42.857 0.00 0.00 0.00 2.29
1364 1483 4.168014 ACTGCGTTTGATCGTATTCGTAA 58.832 39.130 0.00 0.00 38.33 3.18
1365 1484 4.802039 ACTGCGTTTGATCGTATTCGTAAT 59.198 37.500 0.00 0.00 38.33 1.89
1366 1485 5.060884 TGCGTTTGATCGTATTCGTAATG 57.939 39.130 0.00 0.00 38.33 1.90
1613 1744 3.003763 GGCACGGACCCCTTCTCT 61.004 66.667 0.00 0.00 0.00 3.10
1618 1749 1.000486 CGGACCCCTTCTCTCTCCA 60.000 63.158 0.00 0.00 0.00 3.86
1644 1775 0.530870 GCGAGCCATCAAGAGGTACC 60.531 60.000 2.73 2.73 0.00 3.34
1665 1796 4.657039 ACCCAAAAACTCACTACCTACTCA 59.343 41.667 0.00 0.00 0.00 3.41
1672 1803 3.702045 ACTCACTACCTACTCAATGAGCC 59.298 47.826 10.62 0.00 37.65 4.70
1674 1805 4.290093 TCACTACCTACTCAATGAGCCAT 58.710 43.478 10.62 0.00 32.04 4.40
1676 1807 5.053145 CACTACCTACTCAATGAGCCATTC 58.947 45.833 10.62 0.00 31.05 2.67
1720 1868 9.553064 ACTATGTGAAAGCTTATCTTAGAATGG 57.447 33.333 0.00 0.00 33.88 3.16
1838 1986 2.623889 CTCGGTCGAATGGGAAGACTAT 59.376 50.000 0.00 0.00 35.42 2.12
1871 2019 4.761975 ACTTCGTTGTTCCACAAGTAAGA 58.238 39.130 13.80 1.17 39.00 2.10
1873 2021 4.395959 TCGTTGTTCCACAAGTAAGACT 57.604 40.909 0.00 0.00 39.00 3.24
1880 2028 2.098607 TCCACAAGTAAGACTATCCGCG 59.901 50.000 0.00 0.00 0.00 6.46
1890 2038 1.298413 CTATCCGCGACTGGTGACG 60.298 63.158 8.23 0.00 34.73 4.35
1891 2039 1.712018 CTATCCGCGACTGGTGACGA 61.712 60.000 8.23 0.00 33.54 4.20
1892 2040 1.307355 TATCCGCGACTGGTGACGAA 61.307 55.000 8.23 0.00 33.54 3.85
1909 2057 5.680229 GTGACGAATTTCATTCTGCATGATC 59.320 40.000 0.00 0.00 41.82 2.92
1990 2139 1.610522 GCATTGCAGGTTGAGTTCAGT 59.389 47.619 3.15 0.00 0.00 3.41
2014 2163 1.453379 CGAGGAGGGCTCGGTTCTA 60.453 63.158 0.00 0.00 40.27 2.10
2055 2204 3.953712 TGACTCGCTTTCTTGGACATA 57.046 42.857 0.00 0.00 0.00 2.29
2056 2205 4.471904 TGACTCGCTTTCTTGGACATAT 57.528 40.909 0.00 0.00 0.00 1.78
2065 2214 1.756538 TCTTGGACATATCAGAGCGCA 59.243 47.619 11.47 0.00 0.00 6.09
2135 2286 6.283694 TCTGTATTGTCATGTGGAAGATAGC 58.716 40.000 0.00 0.00 0.00 2.97
2145 2296 4.507710 TGTGGAAGATAGCAAGTTAGCAG 58.492 43.478 0.00 0.00 36.85 4.24
2154 2305 3.274288 AGCAAGTTAGCAGCCACTAATC 58.726 45.455 0.00 0.00 34.76 1.75
2178 2329 5.049828 TGAACTTGTATGCAGATATCACCG 58.950 41.667 5.32 0.00 0.00 4.94
2205 2356 2.140717 GTTAAGGTGAACAGGTCCACG 58.859 52.381 0.00 0.00 34.30 4.94
2253 2404 3.637273 GTCCCCACCAAGGCGTCT 61.637 66.667 0.00 0.00 35.39 4.18
2330 2481 8.749354 GGAATTAGTCAAGGTAAACCATTCATT 58.251 33.333 1.26 0.00 38.89 2.57
2360 2511 5.004922 TGTCTGCCAAAACAAAAACTAGG 57.995 39.130 0.00 0.00 0.00 3.02
2365 2516 3.049912 CCAAAACAAAAACTAGGCGAGC 58.950 45.455 0.00 0.00 0.00 5.03
2368 2519 4.379339 AAACAAAAACTAGGCGAGCAAA 57.621 36.364 0.00 0.00 0.00 3.68
2410 2562 4.649977 CGAGTACAGAGAGGTTTAGTTCG 58.350 47.826 0.00 0.00 0.00 3.95
2417 2569 4.627467 CAGAGAGGTTTAGTTCGACCAATG 59.373 45.833 0.00 0.00 38.42 2.82
2419 2571 5.479375 AGAGAGGTTTAGTTCGACCAATGTA 59.521 40.000 0.00 0.00 38.42 2.29
2462 2614 7.231317 TCTGTCAATGCTAGAATTTTCCAGTTT 59.769 33.333 11.12 0.00 0.00 2.66
2469 2621 9.696917 ATGCTAGAATTTTCCAGTTTGTTAAAG 57.303 29.630 0.00 0.00 0.00 1.85
2524 2676 5.352016 CCACATATTTTGAACTTGCCAATGG 59.648 40.000 0.00 0.00 0.00 3.16
2528 2680 7.550196 ACATATTTTGAACTTGCCAATGGAATC 59.450 33.333 2.05 0.00 0.00 2.52
2662 2832 6.201806 CCCTCATTGTTTACGAGAAGATCATC 59.798 42.308 0.00 0.00 0.00 2.92
2803 2973 2.885616 TCCTGATATACCCGACCTTCC 58.114 52.381 0.00 0.00 0.00 3.46
3084 3254 2.764010 GGTTTGTTTCCCCTCTTTGTGT 59.236 45.455 0.00 0.00 0.00 3.72
3302 3472 2.294512 ACTAGTTTGCTTTGCTCTTGGC 59.705 45.455 0.00 0.00 42.22 4.52
3370 3540 4.365514 TTTTGCTGAACCAGTGGATCTA 57.634 40.909 18.40 3.88 33.43 1.98
3375 3545 4.125703 GCTGAACCAGTGGATCTAATCTG 58.874 47.826 18.40 8.77 33.43 2.90
3377 3547 5.599732 CTGAACCAGTGGATCTAATCTGAG 58.400 45.833 18.40 1.08 0.00 3.35
3506 3677 4.696402 AGGACGACGAGGTAATCTATGATC 59.304 45.833 0.00 0.00 0.00 2.92
3507 3678 4.142643 GGACGACGAGGTAATCTATGATCC 60.143 50.000 0.00 0.00 0.00 3.36
3520 3691 5.459536 TCTATGATCCGAACATTCTCTGG 57.540 43.478 0.00 0.00 0.00 3.86
3593 3764 5.066117 TGGAGACATCGACTAGTGTTCATAC 59.934 44.000 0.00 0.00 33.40 2.39
3719 3891 7.655732 CCAATTCATACGAGATTATGGTGTGTA 59.344 37.037 0.00 0.00 31.88 2.90
3739 3911 8.512138 GTGTGTACTTGTATTCTGGCTAAAATT 58.488 33.333 0.00 0.00 0.00 1.82
3740 3912 9.727859 TGTGTACTTGTATTCTGGCTAAAATTA 57.272 29.630 0.00 0.00 0.00 1.40
3796 3992 7.584122 ATGCTGATCTCTGAATGCTATTTTT 57.416 32.000 0.00 0.00 0.00 1.94
4284 4481 7.936584 ACTAGTAAGTCATCAGAGATTACAGC 58.063 38.462 0.00 0.00 33.02 4.40
4291 4488 6.379703 AGTCATCAGAGATTACAGCACTTAGT 59.620 38.462 0.00 0.00 0.00 2.24
4307 4504 4.332819 CACTTAGTAAGAGGCGGGAAATTG 59.667 45.833 16.89 0.00 0.00 2.32
4312 4509 1.154035 GAGGCGGGAAATTGCGTTG 60.154 57.895 0.00 0.00 0.00 4.10
4443 4643 9.699410 ATTCCAAATGGAGTTCATATCTGTTTA 57.301 29.630 1.86 0.00 46.36 2.01
4465 4665 1.007580 TGCGTGCGTTGTAAACTTCA 58.992 45.000 0.00 0.00 46.99 3.02
4671 4871 3.864789 TTTGACTTCTTCTCTGGCCTT 57.135 42.857 3.32 0.00 0.00 4.35
4823 5023 3.427161 GCCCATTGCAGTGATTCTTAC 57.573 47.619 11.31 0.00 40.77 2.34
4884 5084 7.857734 TCTCATTCAACTGTAGTCACAAAAA 57.142 32.000 0.00 0.00 33.22 1.94
5033 7674 0.104356 TAGTGGAGTTGGGGTTGGGA 60.104 55.000 0.00 0.00 0.00 4.37
5046 7687 4.890581 TGGGGTTGGGATTATACAAAATCG 59.109 41.667 0.00 0.00 36.84 3.34
5055 7696 6.156519 GGATTATACAAAATCGGGGATTTGC 58.843 40.000 4.50 0.00 40.77 3.68
5060 7701 1.385528 AAATCGGGGATTTGCGGTAC 58.614 50.000 2.98 0.00 40.24 3.34
5097 7738 5.162075 AGTTGTACTAAGTGAGCGTCAATC 58.838 41.667 0.00 0.00 0.00 2.67
5133 7774 3.720002 GGGGGTAGGATAAATTGGAGTCA 59.280 47.826 0.00 0.00 0.00 3.41
5134 7775 4.167307 GGGGGTAGGATAAATTGGAGTCAA 59.833 45.833 0.00 0.00 37.28 3.18
5135 7776 5.131067 GGGGTAGGATAAATTGGAGTCAAC 58.869 45.833 0.00 0.00 35.48 3.18
5136 7777 5.339695 GGGGTAGGATAAATTGGAGTCAACA 60.340 44.000 0.00 0.00 35.48 3.33
5137 7778 5.589050 GGGTAGGATAAATTGGAGTCAACAC 59.411 44.000 0.00 0.00 35.48 3.32
5138 7779 6.177610 GGTAGGATAAATTGGAGTCAACACA 58.822 40.000 0.00 0.00 35.48 3.72
5139 7780 6.657541 GGTAGGATAAATTGGAGTCAACACAA 59.342 38.462 0.00 0.00 35.48 3.33
5140 7781 6.575162 AGGATAAATTGGAGTCAACACAAC 57.425 37.500 0.00 0.00 35.48 3.32
5141 7782 6.306987 AGGATAAATTGGAGTCAACACAACT 58.693 36.000 0.00 0.00 35.48 3.16
5142 7783 6.777580 AGGATAAATTGGAGTCAACACAACTT 59.222 34.615 0.00 0.00 35.48 2.66
5143 7784 7.942341 AGGATAAATTGGAGTCAACACAACTTA 59.058 33.333 0.00 0.00 35.48 2.24
5144 7785 8.573035 GGATAAATTGGAGTCAACACAACTTAA 58.427 33.333 0.00 0.00 35.48 1.85
5145 7786 9.394477 GATAAATTGGAGTCAACACAACTTAAC 57.606 33.333 0.00 0.00 35.48 2.01
5146 7787 7.404671 AAATTGGAGTCAACACAACTTAACT 57.595 32.000 0.00 0.00 35.48 2.24
5147 7788 7.404671 AATTGGAGTCAACACAACTTAACTT 57.595 32.000 0.00 0.00 35.48 2.66
5148 7789 6.827586 TTGGAGTCAACACAACTTAACTTT 57.172 33.333 0.00 0.00 0.00 2.66
5149 7790 6.827586 TGGAGTCAACACAACTTAACTTTT 57.172 33.333 0.00 0.00 0.00 2.27
5150 7791 7.222000 TGGAGTCAACACAACTTAACTTTTT 57.778 32.000 0.00 0.00 0.00 1.94
5169 7810 5.376854 TTTTTGCAGGTTATCTTCAGAGC 57.623 39.130 0.00 0.00 0.00 4.09
5170 7811 3.988976 TTGCAGGTTATCTTCAGAGCT 57.011 42.857 0.00 0.00 0.00 4.09
5171 7812 3.257469 TGCAGGTTATCTTCAGAGCTG 57.743 47.619 0.00 0.00 40.76 4.24
5173 7814 3.257469 CAGGTTATCTTCAGAGCTGCA 57.743 47.619 1.02 0.00 32.94 4.41
5174 7815 3.196463 CAGGTTATCTTCAGAGCTGCAG 58.804 50.000 10.11 10.11 32.94 4.41
5175 7816 1.939255 GGTTATCTTCAGAGCTGCAGC 59.061 52.381 31.53 31.53 42.49 5.25
5185 7826 2.437359 GCTGCAGCTTGGATCCGT 60.437 61.111 31.33 0.00 38.21 4.69
5186 7827 1.153369 GCTGCAGCTTGGATCCGTA 60.153 57.895 31.33 0.00 38.21 4.02
5187 7828 1.432270 GCTGCAGCTTGGATCCGTAC 61.432 60.000 31.33 0.00 38.21 3.67
5188 7829 1.148157 CTGCAGCTTGGATCCGTACG 61.148 60.000 8.69 8.69 0.00 3.67
5189 7830 1.153628 GCAGCTTGGATCCGTACGT 60.154 57.895 15.21 0.00 0.00 3.57
5190 7831 1.421410 GCAGCTTGGATCCGTACGTG 61.421 60.000 15.21 5.96 0.00 4.49
5191 7832 0.806102 CAGCTTGGATCCGTACGTGG 60.806 60.000 15.21 0.00 0.00 4.94
5192 7833 1.217244 GCTTGGATCCGTACGTGGT 59.783 57.895 15.21 1.48 0.00 4.16
5193 7834 0.804933 GCTTGGATCCGTACGTGGTC 60.805 60.000 15.21 11.09 0.00 4.02
5194 7835 0.179119 CTTGGATCCGTACGTGGTCC 60.179 60.000 22.03 22.03 32.83 4.46
5195 7836 0.612732 TTGGATCCGTACGTGGTCCT 60.613 55.000 26.16 3.67 33.17 3.85
5196 7837 0.612732 TGGATCCGTACGTGGTCCTT 60.613 55.000 26.16 2.63 33.17 3.36
5197 7838 1.340893 TGGATCCGTACGTGGTCCTTA 60.341 52.381 26.16 12.26 33.17 2.69
5198 7839 1.066152 GGATCCGTACGTGGTCCTTAC 59.934 57.143 21.72 3.24 0.00 2.34
5199 7840 2.019984 GATCCGTACGTGGTCCTTACT 58.980 52.381 15.21 0.00 0.00 2.24
5200 7841 1.453155 TCCGTACGTGGTCCTTACTC 58.547 55.000 15.21 0.00 0.00 2.59
5201 7842 1.167851 CCGTACGTGGTCCTTACTCA 58.832 55.000 15.21 0.00 0.00 3.41
5202 7843 1.135575 CCGTACGTGGTCCTTACTCAC 60.136 57.143 15.21 0.00 0.00 3.51
5203 7844 1.808945 CGTACGTGGTCCTTACTCACT 59.191 52.381 7.22 0.00 0.00 3.41
5204 7845 2.159599 CGTACGTGGTCCTTACTCACTC 60.160 54.545 7.22 0.00 0.00 3.51
5205 7846 1.254954 ACGTGGTCCTTACTCACTCC 58.745 55.000 0.00 0.00 0.00 3.85
5206 7847 1.203025 ACGTGGTCCTTACTCACTCCT 60.203 52.381 0.00 0.00 0.00 3.69
5207 7848 2.040813 ACGTGGTCCTTACTCACTCCTA 59.959 50.000 0.00 0.00 0.00 2.94
5208 7849 3.288964 CGTGGTCCTTACTCACTCCTAT 58.711 50.000 0.00 0.00 0.00 2.57
5209 7850 3.066900 CGTGGTCCTTACTCACTCCTATG 59.933 52.174 0.00 0.00 0.00 2.23
5210 7851 3.385111 GTGGTCCTTACTCACTCCTATGG 59.615 52.174 0.00 0.00 0.00 2.74
5211 7852 3.271225 TGGTCCTTACTCACTCCTATGGA 59.729 47.826 0.00 0.00 0.00 3.41
5212 7853 3.637694 GGTCCTTACTCACTCCTATGGAC 59.362 52.174 0.00 0.00 41.19 4.02
5213 7854 4.538738 GTCCTTACTCACTCCTATGGACT 58.461 47.826 0.00 0.00 39.47 3.85
5214 7855 4.581409 GTCCTTACTCACTCCTATGGACTC 59.419 50.000 0.00 0.00 39.47 3.36
5215 7856 3.892588 CCTTACTCACTCCTATGGACTCC 59.107 52.174 0.00 0.00 0.00 3.85
5216 7857 4.537751 CTTACTCACTCCTATGGACTCCA 58.462 47.826 0.00 0.00 38.19 3.86
5217 7858 3.025322 ACTCACTCCTATGGACTCCAG 57.975 52.381 3.62 0.00 36.75 3.86
5218 7859 2.315176 CTCACTCCTATGGACTCCAGG 58.685 57.143 3.62 0.40 36.75 4.45
5219 7860 1.062886 TCACTCCTATGGACTCCAGGG 60.063 57.143 3.62 8.48 36.75 4.45
5220 7861 1.062886 CACTCCTATGGACTCCAGGGA 60.063 57.143 17.05 17.05 36.75 4.20
5221 7862 2.008242 CTCCTATGGACTCCAGGGAG 57.992 60.000 24.17 24.17 44.42 4.30
5222 7863 0.105453 TCCTATGGACTCCAGGGAGC 60.105 60.000 15.18 8.03 45.54 4.70
5223 7864 1.124477 CCTATGGACTCCAGGGAGCC 61.124 65.000 15.18 16.23 45.54 4.70
5224 7865 0.105246 CTATGGACTCCAGGGAGCCT 60.105 60.000 21.43 13.49 45.54 4.58
5225 7866 0.343372 TATGGACTCCAGGGAGCCTT 59.657 55.000 21.43 18.59 45.54 4.35
5226 7867 0.551131 ATGGACTCCAGGGAGCCTTT 60.551 55.000 21.43 11.65 45.54 3.11
5227 7868 1.301293 GGACTCCAGGGAGCCTTTG 59.699 63.158 15.18 0.00 45.54 2.77
5228 7869 1.301293 GACTCCAGGGAGCCTTTGG 59.699 63.158 15.18 4.80 45.54 3.28
5229 7870 1.464198 ACTCCAGGGAGCCTTTGGT 60.464 57.895 15.18 0.00 45.54 3.67
5230 7871 1.068352 ACTCCAGGGAGCCTTTGGTT 61.068 55.000 15.18 0.00 45.54 3.67
5231 7872 0.991920 CTCCAGGGAGCCTTTGGTTA 59.008 55.000 1.73 0.00 35.31 2.85
5232 7873 0.696501 TCCAGGGAGCCTTTGGTTAC 59.303 55.000 9.37 0.00 33.65 2.50
5233 7874 0.698818 CCAGGGAGCCTTTGGTTACT 59.301 55.000 0.00 0.00 0.00 2.24
5234 7875 1.614317 CCAGGGAGCCTTTGGTTACTG 60.614 57.143 0.00 0.00 0.00 2.74
5235 7876 0.698818 AGGGAGCCTTTGGTTACTGG 59.301 55.000 0.00 0.00 0.00 4.00
5236 7877 0.323451 GGGAGCCTTTGGTTACTGGG 60.323 60.000 0.00 0.00 0.00 4.45
5237 7878 0.404426 GGAGCCTTTGGTTACTGGGT 59.596 55.000 0.00 0.00 0.00 4.51
5238 7879 1.534729 GAGCCTTTGGTTACTGGGTG 58.465 55.000 0.00 0.00 0.00 4.61
5239 7880 0.539669 AGCCTTTGGTTACTGGGTGC 60.540 55.000 0.00 0.00 0.00 5.01
5240 7881 0.825840 GCCTTTGGTTACTGGGTGCA 60.826 55.000 0.00 0.00 0.00 4.57
5241 7882 1.698506 CCTTTGGTTACTGGGTGCAA 58.301 50.000 0.00 0.00 0.00 4.08
5242 7883 1.339929 CCTTTGGTTACTGGGTGCAAC 59.660 52.381 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.739462 TCGTTAACTGCATCAGCCCG 60.739 55.000 3.71 0.00 41.13 6.13
7 8 1.009829 CCTCGTTAACTGCATCAGCC 58.990 55.000 3.71 0.00 41.13 4.85
51 152 0.978151 TTAGCGGGAACTAGCCAACA 59.022 50.000 0.00 0.00 33.10 3.33
77 178 9.638239 GTTGTTCCTGCAAGAATATTTCAATTA 57.362 29.630 0.13 0.00 34.07 1.40
259 360 1.068055 GCCTTGCCAGAGTTGTTGATG 60.068 52.381 0.00 0.00 0.00 3.07
306 407 3.286751 TGCACAGCGACTTTGGCC 61.287 61.111 0.00 0.00 0.00 5.36
402 503 2.436824 GAGGGGCTTGACTTCGCC 60.437 66.667 0.00 0.00 45.55 5.54
408 509 2.419436 GCTTAGAGAAGAGGGGCTTGAC 60.419 54.545 0.00 0.00 36.83 3.18
418 519 2.313342 ACCCCTGAGAGCTTAGAGAAGA 59.687 50.000 0.00 0.00 34.25 2.87
647 755 1.570979 GGGGTGGGAAATGGAAGAGAT 59.429 52.381 0.00 0.00 0.00 2.75
656 764 4.415179 AGTTCAAAATTTGGGGTGGGAAAT 59.585 37.500 5.83 0.00 0.00 2.17
663 771 4.037222 ACAGGAAGTTCAAAATTTGGGGT 58.963 39.130 5.83 0.00 0.00 4.95
664 772 4.379652 CACAGGAAGTTCAAAATTTGGGG 58.620 43.478 5.83 0.00 0.00 4.96
675 783 5.725325 AAGTAGACTACCACAGGAAGTTC 57.275 43.478 9.06 0.00 0.00 3.01
681 789 3.963428 AGCAAAGTAGACTACCACAGG 57.037 47.619 9.06 0.00 0.00 4.00
689 797 4.090090 TCTTCTGCCTAGCAAAGTAGACT 58.910 43.478 9.63 0.00 38.41 3.24
699 809 5.809719 GGCATTAATATCTTCTGCCTAGC 57.190 43.478 6.72 0.00 46.97 3.42
705 815 9.064706 ACTCAATTCAGGCATTAATATCTTCTG 57.935 33.333 0.00 0.00 0.00 3.02
716 830 3.771216 ACAAGGACTCAATTCAGGCATT 58.229 40.909 0.00 0.00 0.00 3.56
735 849 6.609876 AGATGTGTATATTATGGCCCAAACA 58.390 36.000 0.00 0.00 0.00 2.83
737 851 7.293828 TCAAGATGTGTATATTATGGCCCAAA 58.706 34.615 0.00 0.00 0.00 3.28
744 858 8.298030 TCGCAGTTCAAGATGTGTATATTATG 57.702 34.615 0.00 0.00 0.00 1.90
795 909 3.142796 GTTTGCACGACACTTTCCG 57.857 52.632 0.00 0.00 0.00 4.30
812 926 3.071206 AGCCGATCAGCCTCACGT 61.071 61.111 0.00 0.00 0.00 4.49
838 952 1.538419 CGTAAATCTCCTCTTCCGCCC 60.538 57.143 0.00 0.00 0.00 6.13
847 961 2.812011 GTGGCACAAACGTAAATCTCCT 59.188 45.455 13.86 0.00 44.16 3.69
1011 1125 2.758089 GCCGGAGTAGAGCGACGAA 61.758 63.158 5.05 0.00 0.00 3.85
1312 1426 2.203070 GCGCCATTGACGAGGGAT 60.203 61.111 0.00 0.00 0.00 3.85
1427 1555 4.146075 GAGCTCTGCCTCTGCGCT 62.146 66.667 9.73 0.00 41.78 5.92
1529 1660 1.679311 CCACTGCTCCTTGTGGCTA 59.321 57.895 0.00 0.00 45.68 3.93
1644 1775 6.934645 TCATTGAGTAGGTAGTGAGTTTTTGG 59.065 38.462 0.00 0.00 0.00 3.28
1700 1837 7.336931 GGAACACCATTCTAAGATAAGCTTTCA 59.663 37.037 3.20 0.00 38.05 2.69
1701 1838 7.554476 AGGAACACCATTCTAAGATAAGCTTTC 59.446 37.037 3.20 2.24 38.05 2.62
1709 1846 5.284582 AGAGGAGGAACACCATTCTAAGAT 58.715 41.667 0.00 0.00 43.22 2.40
1710 1847 4.689062 AGAGGAGGAACACCATTCTAAGA 58.311 43.478 0.00 0.00 43.22 2.10
1720 1868 3.403968 GGACAAAGAAGAGGAGGAACAC 58.596 50.000 0.00 0.00 0.00 3.32
1838 1986 1.075542 CAACGAAGTAGAATGCGCCA 58.924 50.000 4.18 0.00 45.00 5.69
1871 2019 1.807886 GTCACCAGTCGCGGATAGT 59.192 57.895 6.13 0.00 0.00 2.12
1873 2021 1.307355 TTCGTCACCAGTCGCGGATA 61.307 55.000 6.13 0.00 0.00 2.59
2035 2184 2.839486 ATGTCCAAGAAAGCGAGTCA 57.161 45.000 0.00 0.00 0.00 3.41
2055 2204 2.182791 CGTCCACTGCGCTCTGAT 59.817 61.111 9.73 0.00 0.00 2.90
2056 2205 2.982744 CTCGTCCACTGCGCTCTGA 61.983 63.158 9.73 0.00 0.00 3.27
2105 2254 8.946085 TCTTCCACATGACAATACAGAAATAAC 58.054 33.333 0.00 0.00 0.00 1.89
2135 2286 4.507710 TCAGATTAGTGGCTGCTAACTTG 58.492 43.478 12.46 6.51 34.25 3.16
2145 2296 4.635765 TGCATACAAGTTCAGATTAGTGGC 59.364 41.667 0.00 0.00 0.00 5.01
2154 2305 5.176406 CGGTGATATCTGCATACAAGTTCAG 59.824 44.000 3.98 0.00 0.00 3.02
2205 2356 1.361793 TTACGATGGCGGTTTGTAGC 58.638 50.000 0.00 0.00 43.17 3.58
2253 2404 4.326826 CTTGAGTAACAGCAAGATCCCAA 58.673 43.478 0.00 0.00 43.11 4.12
2330 2481 2.206750 GTTTTGGCAGACAGTGACGTA 58.793 47.619 0.00 0.00 36.69 3.57
2331 2482 1.014352 GTTTTGGCAGACAGTGACGT 58.986 50.000 0.00 0.00 36.69 4.34
2437 2589 6.506500 ACTGGAAAATTCTAGCATTGACAG 57.493 37.500 6.45 10.29 39.14 3.51
2468 2620 9.574516 AAGAATGGAAAACAAGTAGTATGTTCT 57.425 29.630 0.00 0.00 39.98 3.01
2469 2621 9.612620 CAAGAATGGAAAACAAGTAGTATGTTC 57.387 33.333 0.00 0.00 39.98 3.18
2472 2624 9.612620 GAACAAGAATGGAAAACAAGTAGTATG 57.387 33.333 0.00 0.00 0.00 2.39
2474 2626 8.617809 GTGAACAAGAATGGAAAACAAGTAGTA 58.382 33.333 0.00 0.00 0.00 1.82
2476 2628 6.918022 GGTGAACAAGAATGGAAAACAAGTAG 59.082 38.462 0.00 0.00 0.00 2.57
2524 2676 3.311966 GCACAACCTGCAGAAAAGATTC 58.688 45.455 17.39 0.00 46.29 2.52
2547 2699 1.302832 GTACCTGCTGCACCTTGCT 60.303 57.895 0.00 0.00 45.31 3.91
2662 2832 3.439293 CTGTATACACAAGAGTCGCAGG 58.561 50.000 0.08 0.00 33.22 4.85
2925 3095 6.899089 TCTGGCTATTCAGAATGTTTGGATA 58.101 36.000 5.85 0.00 40.43 2.59
3111 3281 4.025563 TGCCGATATCACCGTAAAATTTCG 60.026 41.667 3.12 0.00 0.00 3.46
3506 3677 1.466167 CAAGTGCCAGAGAATGTTCGG 59.534 52.381 0.00 0.00 0.00 4.30
3507 3678 1.466167 CCAAGTGCCAGAGAATGTTCG 59.534 52.381 0.00 0.00 0.00 3.95
3520 3691 4.623932 TGATCCCTACATATCCAAGTGC 57.376 45.455 0.00 0.00 0.00 4.40
3593 3764 5.877012 AGCACAAAGTATCAGTGGTCTATTG 59.123 40.000 0.00 0.00 39.53 1.90
3601 3772 5.674569 GCAATACCAGCACAAAGTATCAGTG 60.675 44.000 0.00 0.00 36.39 3.66
3603 3774 4.395854 TGCAATACCAGCACAAAGTATCAG 59.604 41.667 0.00 0.00 37.02 2.90
3752 3924 9.519191 TCAGCATTAATAGGTTGCATATGTTAT 57.481 29.630 4.29 0.00 38.84 1.89
3771 3967 7.584122 AAAATAGCATTCAGAGATCAGCATT 57.416 32.000 0.00 0.00 0.00 3.56
3796 3992 5.008514 TCGAAGATTTCTGCAACAACATCAA 59.991 36.000 0.00 0.00 0.00 2.57
3815 4011 1.593006 GCATACATTCCACGGTCGAAG 59.407 52.381 0.00 0.00 0.00 3.79
4283 4480 0.822164 TCCCGCCTCTTACTAAGTGC 59.178 55.000 0.00 0.63 0.00 4.40
4284 4481 3.604875 TTTCCCGCCTCTTACTAAGTG 57.395 47.619 0.00 0.00 0.00 3.16
4291 4488 0.035820 ACGCAATTTCCCGCCTCTTA 60.036 50.000 0.00 0.00 0.00 2.10
4307 4504 9.197694 AGACATTCTATATAATTGAGACAACGC 57.802 33.333 0.00 0.00 0.00 4.84
4443 4643 0.941542 AGTTTACAACGCACGCACAT 59.058 45.000 0.00 0.00 36.23 3.21
4465 4665 5.217978 TGCAAATCAGGCTGAAATCTTTT 57.782 34.783 22.84 13.88 0.00 2.27
4671 4871 6.840527 TCCAGATCATATAAGCAATTGGACA 58.159 36.000 7.72 0.00 0.00 4.02
4823 5023 0.174389 AGAGACTATGCCACACGCTG 59.826 55.000 0.00 0.00 38.78 5.18
5033 7674 5.278758 CCGCAAATCCCCGATTTTGTATAAT 60.279 40.000 0.00 0.00 39.82 1.28
5060 7701 0.905357 ACAACTTCGATCAGAGGGGG 59.095 55.000 0.00 0.00 0.00 5.40
5097 7738 2.143876 ACCCCCTTCGATCCAAATTG 57.856 50.000 0.00 0.00 0.00 2.32
5147 7788 5.048504 CAGCTCTGAAGATAACCTGCAAAAA 60.049 40.000 0.00 0.00 27.65 1.94
5148 7789 4.456911 CAGCTCTGAAGATAACCTGCAAAA 59.543 41.667 0.00 0.00 27.65 2.44
5149 7790 4.005650 CAGCTCTGAAGATAACCTGCAAA 58.994 43.478 0.00 0.00 27.65 3.68
5150 7791 3.603532 CAGCTCTGAAGATAACCTGCAA 58.396 45.455 0.00 0.00 27.65 4.08
5151 7792 2.679059 GCAGCTCTGAAGATAACCTGCA 60.679 50.000 0.29 0.00 42.60 4.41
5152 7793 1.939255 GCAGCTCTGAAGATAACCTGC 59.061 52.381 0.29 0.00 37.63 4.85
5153 7794 3.196463 CTGCAGCTCTGAAGATAACCTG 58.804 50.000 0.00 0.00 38.57 4.00
5154 7795 2.419851 GCTGCAGCTCTGAAGATAACCT 60.420 50.000 31.33 0.00 38.57 3.50
5155 7796 1.939255 GCTGCAGCTCTGAAGATAACC 59.061 52.381 31.33 0.00 38.57 2.85
5168 7809 1.153369 TACGGATCCAAGCTGCAGC 60.153 57.895 31.53 31.53 42.49 5.25
5169 7810 1.148157 CGTACGGATCCAAGCTGCAG 61.148 60.000 13.41 10.11 0.00 4.41
5170 7811 1.153647 CGTACGGATCCAAGCTGCA 60.154 57.895 13.41 0.00 0.00 4.41
5171 7812 1.153628 ACGTACGGATCCAAGCTGC 60.154 57.895 21.06 0.00 0.00 5.25
5172 7813 0.806102 CCACGTACGGATCCAAGCTG 60.806 60.000 21.06 4.99 0.00 4.24
5173 7814 1.255667 ACCACGTACGGATCCAAGCT 61.256 55.000 21.06 0.00 0.00 3.74
5174 7815 0.804933 GACCACGTACGGATCCAAGC 60.805 60.000 21.06 0.00 0.00 4.01
5175 7816 0.179119 GGACCACGTACGGATCCAAG 60.179 60.000 21.06 0.00 0.00 3.61
5176 7817 0.612732 AGGACCACGTACGGATCCAA 60.613 55.000 26.58 0.00 31.41 3.53
5177 7818 0.612732 AAGGACCACGTACGGATCCA 60.613 55.000 26.58 0.00 31.41 3.41
5178 7819 1.066152 GTAAGGACCACGTACGGATCC 59.934 57.143 21.06 20.92 0.00 3.36
5179 7820 2.019984 AGTAAGGACCACGTACGGATC 58.980 52.381 21.06 13.09 38.79 3.36
5180 7821 2.019984 GAGTAAGGACCACGTACGGAT 58.980 52.381 21.06 3.85 38.79 4.18
5181 7822 1.271325 TGAGTAAGGACCACGTACGGA 60.271 52.381 21.06 0.00 38.79 4.69
5182 7823 1.135575 GTGAGTAAGGACCACGTACGG 60.136 57.143 21.06 8.46 38.79 4.02
5183 7824 1.808945 AGTGAGTAAGGACCACGTACG 59.191 52.381 15.01 15.01 38.79 3.67
5184 7825 2.163211 GGAGTGAGTAAGGACCACGTAC 59.837 54.545 0.00 0.00 34.07 3.67
5185 7826 2.040813 AGGAGTGAGTAAGGACCACGTA 59.959 50.000 0.00 0.00 34.07 3.57
5186 7827 1.203025 AGGAGTGAGTAAGGACCACGT 60.203 52.381 0.00 0.00 34.07 4.49
5187 7828 1.546961 AGGAGTGAGTAAGGACCACG 58.453 55.000 0.00 0.00 34.07 4.94
5188 7829 3.385111 CCATAGGAGTGAGTAAGGACCAC 59.615 52.174 0.00 0.00 0.00 4.16
5189 7830 3.271225 TCCATAGGAGTGAGTAAGGACCA 59.729 47.826 0.00 0.00 0.00 4.02
5190 7831 3.637694 GTCCATAGGAGTGAGTAAGGACC 59.362 52.174 0.00 0.00 38.62 4.46
5191 7832 4.538738 AGTCCATAGGAGTGAGTAAGGAC 58.461 47.826 0.00 0.00 43.44 3.85
5192 7833 4.386536 GGAGTCCATAGGAGTGAGTAAGGA 60.387 50.000 3.60 0.00 35.20 3.36
5193 7834 3.892588 GGAGTCCATAGGAGTGAGTAAGG 59.107 52.174 3.60 0.00 35.20 2.69
5194 7835 4.537751 TGGAGTCCATAGGAGTGAGTAAG 58.462 47.826 8.12 0.00 35.20 2.34
5195 7836 4.537751 CTGGAGTCCATAGGAGTGAGTAA 58.462 47.826 13.56 0.00 35.20 2.24
5196 7837 3.117474 CCTGGAGTCCATAGGAGTGAGTA 60.117 52.174 13.56 0.00 35.20 2.59
5197 7838 2.358721 CCTGGAGTCCATAGGAGTGAGT 60.359 54.545 13.56 0.00 35.20 3.41
5198 7839 2.315176 CCTGGAGTCCATAGGAGTGAG 58.685 57.143 13.56 0.00 35.20 3.51
5199 7840 1.062886 CCCTGGAGTCCATAGGAGTGA 60.063 57.143 19.46 0.00 35.20 3.41
5200 7841 1.062886 TCCCTGGAGTCCATAGGAGTG 60.063 57.143 21.79 6.23 35.20 3.51
5201 7842 1.219213 CTCCCTGGAGTCCATAGGAGT 59.781 57.143 32.35 0.00 43.37 3.85
5202 7843 2.008242 CTCCCTGGAGTCCATAGGAG 57.992 60.000 30.22 30.22 43.07 3.69
5203 7844 0.105453 GCTCCCTGGAGTCCATAGGA 60.105 60.000 23.34 23.34 43.70 2.94
5204 7845 1.124477 GGCTCCCTGGAGTCCATAGG 61.124 65.000 13.56 16.58 43.70 2.57
5205 7846 2.446512 GGCTCCCTGGAGTCCATAG 58.553 63.158 13.56 11.69 43.70 2.23
5206 7847 4.728780 GGCTCCCTGGAGTCCATA 57.271 61.111 13.56 0.35 43.70 2.74
5210 7851 1.301293 CCAAAGGCTCCCTGGAGTC 59.699 63.158 9.84 9.84 46.35 3.36
5211 7852 1.068352 AACCAAAGGCTCCCTGGAGT 61.068 55.000 14.45 0.00 43.70 3.85
5212 7853 0.991920 TAACCAAAGGCTCCCTGGAG 59.008 55.000 15.04 8.91 44.56 3.86
5213 7854 0.696501 GTAACCAAAGGCTCCCTGGA 59.303 55.000 15.04 0.00 32.13 3.86
5214 7855 0.698818 AGTAACCAAAGGCTCCCTGG 59.301 55.000 8.30 8.30 32.13 4.45
5215 7856 1.614317 CCAGTAACCAAAGGCTCCCTG 60.614 57.143 0.00 0.00 32.13 4.45
5216 7857 0.698818 CCAGTAACCAAAGGCTCCCT 59.301 55.000 0.00 0.00 33.87 4.20
5217 7858 0.323451 CCCAGTAACCAAAGGCTCCC 60.323 60.000 0.00 0.00 0.00 4.30
5218 7859 0.404426 ACCCAGTAACCAAAGGCTCC 59.596 55.000 0.00 0.00 0.00 4.70
5219 7860 1.534729 CACCCAGTAACCAAAGGCTC 58.465 55.000 0.00 0.00 0.00 4.70
5220 7861 0.539669 GCACCCAGTAACCAAAGGCT 60.540 55.000 0.00 0.00 0.00 4.58
5221 7862 0.825840 TGCACCCAGTAACCAAAGGC 60.826 55.000 0.00 0.00 0.00 4.35
5222 7863 1.339929 GTTGCACCCAGTAACCAAAGG 59.660 52.381 0.00 0.00 36.91 3.11
5223 7864 2.793278 GTTGCACCCAGTAACCAAAG 57.207 50.000 0.00 0.00 36.91 2.77
5228 7869 1.272212 CCATTGGTTGCACCCAGTAAC 59.728 52.381 2.20 0.00 41.48 2.50
5229 7870 1.626686 CCATTGGTTGCACCCAGTAA 58.373 50.000 2.20 0.00 37.50 2.24
5230 7871 0.251564 CCCATTGGTTGCACCCAGTA 60.252 55.000 2.20 0.00 37.50 2.74
5231 7872 1.533753 CCCATTGGTTGCACCCAGT 60.534 57.895 2.20 0.00 37.50 4.00
5232 7873 1.228831 TCCCATTGGTTGCACCCAG 60.229 57.895 2.20 0.00 37.50 4.45
5233 7874 1.228831 CTCCCATTGGTTGCACCCA 60.229 57.895 0.00 0.00 37.50 4.51
5234 7875 1.076549 TCTCCCATTGGTTGCACCC 59.923 57.895 1.20 0.00 37.50 4.61
5235 7876 4.841441 TCTCCCATTGGTTGCACC 57.159 55.556 1.20 0.00 39.22 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.