Multiple sequence alignment - TraesCS5D01G196000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G196000 chr5D 100.000 2507 0 0 1 2507 299425707 299423201 0.000000e+00 4630
1 TraesCS5D01G196000 chr5A 90.070 2014 104 33 524 2507 396710172 396708225 0.000000e+00 2523
2 TraesCS5D01G196000 chr5A 93.678 174 11 0 143 316 396710335 396710162 6.880000e-66 261
3 TraesCS5D01G196000 chr5B 90.548 1862 101 29 667 2507 340722049 340720242 0.000000e+00 2394
4 TraesCS5D01G196000 chr2A 86.804 341 40 3 2168 2504 41462425 41462764 2.350000e-100 375
5 TraesCS5D01G196000 chr6D 97.630 211 3 1 317 525 463217160 463217370 6.590000e-96 361
6 TraesCS5D01G196000 chr6D 97.183 213 5 1 315 526 21819524 21819312 2.370000e-95 359
7 TraesCS5D01G196000 chr6D 97.196 214 3 2 317 528 451070623 451070411 2.370000e-95 359
8 TraesCS5D01G196000 chr2D 97.170 212 4 1 317 526 31669768 31669557 8.530000e-95 357
9 TraesCS5D01G196000 chr2D 97.170 212 4 1 317 526 45874550 45874339 8.530000e-95 357
10 TraesCS5D01G196000 chr2D 96.330 218 4 3 314 527 593407349 593407566 3.070000e-94 355
11 TraesCS5D01G196000 chr1D 96.330 218 6 2 317 532 29729781 29729564 8.530000e-95 357
12 TraesCS5D01G196000 chr1D 97.170 212 5 1 316 526 455642273 455642062 8.530000e-95 357
13 TraesCS5D01G196000 chr1D 97.156 211 5 1 316 525 488617817 488618027 3.070000e-94 355
14 TraesCS5D01G196000 chr2B 86.731 309 40 1 2196 2504 63782986 63783293 2.390000e-90 342
15 TraesCS5D01G196000 chr4B 86.022 93 11 1 191 281 646816552 646816460 5.710000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G196000 chr5D 299423201 299425707 2506 True 4630 4630 100.000 1 2507 1 chr5D.!!$R1 2506
1 TraesCS5D01G196000 chr5A 396708225 396710335 2110 True 1392 2523 91.874 143 2507 2 chr5A.!!$R1 2364
2 TraesCS5D01G196000 chr5B 340720242 340722049 1807 True 2394 2394 90.548 667 2507 1 chr5B.!!$R1 1840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
339 340 0.037447 AAGACTTGCCTGCTCCCTTC 59.963 55.0 0.0 0.0 0.0 3.46 F
491 492 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 1265 0.109412 AGAAGGCGTCCGTAAGTTCG 60.109 55.0 0.0 0.0 35.33 3.95 R
2477 2548 0.731514 CTGCAGCCAATGACAAAGCG 60.732 55.0 0.0 0.0 0.00 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.937304 CGTGGCATCTATCCGTTTGG 59.063 55.000 0.00 0.00 0.00 3.28
20 21 1.308998 GTGGCATCTATCCGTTTGGG 58.691 55.000 0.00 0.00 35.24 4.12
21 22 0.465460 TGGCATCTATCCGTTTGGGC 60.465 55.000 0.00 0.00 35.24 5.36
22 23 1.172812 GGCATCTATCCGTTTGGGCC 61.173 60.000 0.00 0.00 35.24 5.80
23 24 0.179018 GCATCTATCCGTTTGGGCCT 60.179 55.000 4.53 0.00 35.24 5.19
24 25 1.071699 GCATCTATCCGTTTGGGCCTA 59.928 52.381 4.53 0.00 35.24 3.93
25 26 2.290323 GCATCTATCCGTTTGGGCCTAT 60.290 50.000 4.53 0.00 35.24 2.57
26 27 3.055385 GCATCTATCCGTTTGGGCCTATA 60.055 47.826 4.53 0.00 35.24 1.31
27 28 4.504858 CATCTATCCGTTTGGGCCTATAC 58.495 47.826 4.53 0.00 35.24 1.47
28 29 2.559668 TCTATCCGTTTGGGCCTATACG 59.440 50.000 22.11 22.11 35.24 3.06
29 30 4.449391 CCGTTTGGGCCTATACGG 57.551 61.111 30.50 30.50 46.22 4.02
31 32 2.981997 CGTTTGGGCCTATACGGAC 58.018 57.895 21.49 2.71 41.67 4.79
32 33 0.176219 CGTTTGGGCCTATACGGACA 59.824 55.000 21.49 0.00 45.67 4.02
33 34 1.660167 GTTTGGGCCTATACGGACAC 58.340 55.000 4.53 0.00 45.67 3.67
34 35 1.208776 GTTTGGGCCTATACGGACACT 59.791 52.381 4.53 0.00 45.67 3.55
35 36 1.117150 TTGGGCCTATACGGACACTC 58.883 55.000 4.53 0.00 45.67 3.51
36 37 1.105167 TGGGCCTATACGGACACTCG 61.105 60.000 4.53 0.00 45.67 4.18
37 38 1.007618 GGCCTATACGGACACTCGC 60.008 63.158 0.00 0.00 42.15 5.03
38 39 1.370172 GCCTATACGGACACTCGCG 60.370 63.158 0.00 0.00 33.16 5.87
39 40 1.281960 CCTATACGGACACTCGCGG 59.718 63.158 6.13 0.00 33.16 6.46
40 41 1.162181 CCTATACGGACACTCGCGGA 61.162 60.000 6.13 0.00 33.16 5.54
41 42 0.041488 CTATACGGACACTCGCGGAC 60.041 60.000 6.13 0.00 0.00 4.79
42 43 1.439353 TATACGGACACTCGCGGACC 61.439 60.000 6.13 0.00 0.00 4.46
44 45 4.778415 CGGACACTCGCGGACCAG 62.778 72.222 6.13 0.00 0.00 4.00
45 46 3.371063 GGACACTCGCGGACCAGA 61.371 66.667 6.13 0.00 0.00 3.86
46 47 2.711922 GGACACTCGCGGACCAGAT 61.712 63.158 6.13 0.00 0.00 2.90
47 48 1.517257 GACACTCGCGGACCAGATG 60.517 63.158 6.13 0.22 0.00 2.90
48 49 1.934220 GACACTCGCGGACCAGATGA 61.934 60.000 6.13 0.00 0.00 2.92
49 50 1.226802 CACTCGCGGACCAGATGAG 60.227 63.158 6.13 0.00 0.00 2.90
50 51 2.415010 CTCGCGGACCAGATGAGG 59.585 66.667 6.13 0.00 0.00 3.86
51 52 2.362503 TCGCGGACCAGATGAGGT 60.363 61.111 6.13 0.00 46.82 3.85
52 53 1.077285 TCGCGGACCAGATGAGGTA 60.077 57.895 6.13 0.00 43.38 3.08
53 54 1.101635 TCGCGGACCAGATGAGGTAG 61.102 60.000 6.13 0.00 43.38 3.18
54 55 1.384989 CGCGGACCAGATGAGGTAGT 61.385 60.000 0.00 0.00 43.38 2.73
55 56 0.103208 GCGGACCAGATGAGGTAGTG 59.897 60.000 0.00 0.00 43.38 2.74
56 57 0.103208 CGGACCAGATGAGGTAGTGC 59.897 60.000 0.00 0.00 43.38 4.40
57 58 0.103208 GGACCAGATGAGGTAGTGCG 59.897 60.000 0.00 0.00 43.38 5.34
58 59 0.818296 GACCAGATGAGGTAGTGCGT 59.182 55.000 0.00 0.00 43.38 5.24
59 60 1.204941 GACCAGATGAGGTAGTGCGTT 59.795 52.381 0.00 0.00 43.38 4.84
60 61 1.066858 ACCAGATGAGGTAGTGCGTTG 60.067 52.381 0.00 0.00 40.98 4.10
61 62 1.645034 CAGATGAGGTAGTGCGTTGG 58.355 55.000 0.00 0.00 0.00 3.77
62 63 1.204704 CAGATGAGGTAGTGCGTTGGA 59.795 52.381 0.00 0.00 0.00 3.53
63 64 1.478510 AGATGAGGTAGTGCGTTGGAG 59.521 52.381 0.00 0.00 0.00 3.86
64 65 1.204941 GATGAGGTAGTGCGTTGGAGT 59.795 52.381 0.00 0.00 0.00 3.85
65 66 1.045407 TGAGGTAGTGCGTTGGAGTT 58.955 50.000 0.00 0.00 0.00 3.01
66 67 1.270094 TGAGGTAGTGCGTTGGAGTTG 60.270 52.381 0.00 0.00 0.00 3.16
67 68 0.756903 AGGTAGTGCGTTGGAGTTGT 59.243 50.000 0.00 0.00 0.00 3.32
68 69 1.145803 GGTAGTGCGTTGGAGTTGTC 58.854 55.000 0.00 0.00 0.00 3.18
69 70 1.145803 GTAGTGCGTTGGAGTTGTCC 58.854 55.000 0.00 0.00 44.24 4.02
70 71 1.045407 TAGTGCGTTGGAGTTGTCCT 58.955 50.000 0.00 0.00 44.30 3.85
71 72 0.532862 AGTGCGTTGGAGTTGTCCTG 60.533 55.000 0.00 0.00 44.30 3.86
72 73 0.531974 GTGCGTTGGAGTTGTCCTGA 60.532 55.000 0.00 0.00 44.30 3.86
73 74 0.179234 TGCGTTGGAGTTGTCCTGAA 59.821 50.000 0.00 0.00 44.30 3.02
74 75 0.868406 GCGTTGGAGTTGTCCTGAAG 59.132 55.000 0.00 0.00 44.30 3.02
75 76 1.512926 CGTTGGAGTTGTCCTGAAGG 58.487 55.000 0.00 0.00 44.30 3.46
76 77 1.239347 GTTGGAGTTGTCCTGAAGGC 58.761 55.000 0.00 0.00 44.30 4.35
77 78 0.110486 TTGGAGTTGTCCTGAAGGCC 59.890 55.000 0.00 0.00 44.30 5.19
78 79 1.002011 GGAGTTGTCCTGAAGGCCC 60.002 63.158 0.00 0.00 40.17 5.80
79 80 1.376037 GAGTTGTCCTGAAGGCCCG 60.376 63.158 0.00 0.00 34.44 6.13
80 81 2.113243 GAGTTGTCCTGAAGGCCCGT 62.113 60.000 0.00 0.00 34.44 5.28
81 82 0.834687 AGTTGTCCTGAAGGCCCGTA 60.835 55.000 0.00 0.00 34.44 4.02
82 83 0.672711 GTTGTCCTGAAGGCCCGTAC 60.673 60.000 0.00 0.00 34.44 3.67
83 84 2.162338 TTGTCCTGAAGGCCCGTACG 62.162 60.000 8.69 8.69 34.44 3.67
84 85 3.766691 TCCTGAAGGCCCGTACGC 61.767 66.667 10.49 0.00 34.44 4.42
113 114 4.318021 CAGCACACACGCCAGCAC 62.318 66.667 0.00 0.00 0.00 4.40
140 141 2.125147 GCTATGACGGCCAGCACA 60.125 61.111 2.24 0.00 35.35 4.57
141 142 1.524621 GCTATGACGGCCAGCACAT 60.525 57.895 2.24 4.89 35.35 3.21
234 235 2.669240 GGTGGCTGTAGGTGGGAC 59.331 66.667 0.00 0.00 0.00 4.46
236 237 2.205749 TGGCTGTAGGTGGGACCA 59.794 61.111 0.00 0.00 41.95 4.02
259 260 0.249911 GGACGGGTATGACATGGAGC 60.250 60.000 0.00 0.00 0.00 4.70
261 262 1.040893 ACGGGTATGACATGGAGCGA 61.041 55.000 0.00 0.00 0.00 4.93
268 269 1.153549 GACATGGAGCGAGGTGTCC 60.154 63.158 0.00 0.00 35.98 4.02
276 277 4.039357 CGAGGTGTCCGAGCGTGT 62.039 66.667 0.00 0.00 0.00 4.49
308 309 3.391506 GCAATTTCCTCATATTGCCCC 57.608 47.619 8.24 0.00 46.79 5.80
309 310 2.037641 GCAATTTCCTCATATTGCCCCC 59.962 50.000 8.24 0.00 46.79 5.40
310 311 3.307506 CAATTTCCTCATATTGCCCCCA 58.692 45.455 0.00 0.00 0.00 4.96
311 312 3.704545 ATTTCCTCATATTGCCCCCAA 57.295 42.857 0.00 0.00 35.01 4.12
312 313 3.481559 TTTCCTCATATTGCCCCCAAA 57.518 42.857 0.00 0.00 34.05 3.28
313 314 3.704545 TTCCTCATATTGCCCCCAAAT 57.295 42.857 0.00 0.00 34.05 2.32
314 315 3.704545 TCCTCATATTGCCCCCAAATT 57.295 42.857 0.00 0.00 34.05 1.82
315 316 4.006247 TCCTCATATTGCCCCCAAATTT 57.994 40.909 0.00 0.00 34.05 1.82
316 317 3.710677 TCCTCATATTGCCCCCAAATTTG 59.289 43.478 11.40 11.40 34.05 2.32
330 331 4.326504 CAAATTTGGACAAGACTTGCCT 57.673 40.909 21.56 4.53 0.00 4.75
331 332 4.053295 CAAATTTGGACAAGACTTGCCTG 58.947 43.478 21.56 12.15 0.00 4.85
332 333 1.032014 TTTGGACAAGACTTGCCTGC 58.968 50.000 21.56 9.37 0.00 4.85
333 334 0.183492 TTGGACAAGACTTGCCTGCT 59.817 50.000 21.56 3.27 0.00 4.24
334 335 0.250467 TGGACAAGACTTGCCTGCTC 60.250 55.000 21.56 10.70 0.00 4.26
335 336 0.957888 GGACAAGACTTGCCTGCTCC 60.958 60.000 15.24 10.16 0.00 4.70
336 337 0.957888 GACAAGACTTGCCTGCTCCC 60.958 60.000 15.24 0.00 0.00 4.30
337 338 1.377994 CAAGACTTGCCTGCTCCCT 59.622 57.895 1.43 0.00 0.00 4.20
338 339 0.251077 CAAGACTTGCCTGCTCCCTT 60.251 55.000 1.43 0.00 0.00 3.95
339 340 0.037447 AAGACTTGCCTGCTCCCTTC 59.963 55.000 0.00 0.00 0.00 3.46
340 341 1.377856 GACTTGCCTGCTCCCTTCC 60.378 63.158 0.00 0.00 0.00 3.46
341 342 2.044551 CTTGCCTGCTCCCTTCCC 60.045 66.667 0.00 0.00 0.00 3.97
342 343 2.858476 TTGCCTGCTCCCTTCCCA 60.858 61.111 0.00 0.00 0.00 4.37
343 344 2.220786 CTTGCCTGCTCCCTTCCCAT 62.221 60.000 0.00 0.00 0.00 4.00
344 345 2.123982 GCCTGCTCCCTTCCCATG 60.124 66.667 0.00 0.00 0.00 3.66
345 346 2.123982 CCTGCTCCCTTCCCATGC 60.124 66.667 0.00 0.00 0.00 4.06
346 347 2.687610 CCTGCTCCCTTCCCATGCT 61.688 63.158 0.00 0.00 0.00 3.79
347 348 1.153005 CTGCTCCCTTCCCATGCTC 60.153 63.158 0.00 0.00 0.00 4.26
348 349 1.617536 TGCTCCCTTCCCATGCTCT 60.618 57.895 0.00 0.00 0.00 4.09
349 350 1.148048 GCTCCCTTCCCATGCTCTC 59.852 63.158 0.00 0.00 0.00 3.20
350 351 1.630126 GCTCCCTTCCCATGCTCTCA 61.630 60.000 0.00 0.00 0.00 3.27
351 352 1.138568 CTCCCTTCCCATGCTCTCAT 58.861 55.000 0.00 0.00 0.00 2.90
352 353 1.072015 CTCCCTTCCCATGCTCTCATC 59.928 57.143 0.00 0.00 0.00 2.92
353 354 0.110104 CCCTTCCCATGCTCTCATCC 59.890 60.000 0.00 0.00 0.00 3.51
354 355 0.250209 CCTTCCCATGCTCTCATCCG 60.250 60.000 0.00 0.00 0.00 4.18
355 356 0.467384 CTTCCCATGCTCTCATCCGT 59.533 55.000 0.00 0.00 0.00 4.69
356 357 0.178767 TTCCCATGCTCTCATCCGTG 59.821 55.000 0.00 0.00 0.00 4.94
357 358 1.890979 CCCATGCTCTCATCCGTGC 60.891 63.158 0.00 0.00 0.00 5.34
358 359 1.145598 CCATGCTCTCATCCGTGCT 59.854 57.895 0.00 0.00 0.00 4.40
359 360 0.879400 CCATGCTCTCATCCGTGCTC 60.879 60.000 0.00 0.00 0.00 4.26
360 361 0.879400 CATGCTCTCATCCGTGCTCC 60.879 60.000 0.00 0.00 0.00 4.70
361 362 2.037620 ATGCTCTCATCCGTGCTCCC 62.038 60.000 0.00 0.00 0.00 4.30
362 363 2.415010 CTCTCATCCGTGCTCCCG 59.585 66.667 0.00 0.00 0.00 5.14
363 364 3.781770 CTCTCATCCGTGCTCCCGC 62.782 68.421 0.00 0.00 0.00 6.13
364 365 4.147449 CTCATCCGTGCTCCCGCA 62.147 66.667 0.00 0.00 45.60 5.69
372 373 2.203195 TGCTCCCGCATATGTGGC 60.203 61.111 26.98 17.22 44.11 5.01
373 374 2.111878 GCTCCCGCATATGTGGCT 59.888 61.111 26.98 0.00 44.11 4.75
374 375 1.526917 GCTCCCGCATATGTGGCTT 60.527 57.895 26.98 0.00 44.11 4.35
375 376 1.789078 GCTCCCGCATATGTGGCTTG 61.789 60.000 26.98 18.95 44.11 4.01
376 377 0.179048 CTCCCGCATATGTGGCTTGA 60.179 55.000 26.98 18.25 44.11 3.02
377 378 0.473755 TCCCGCATATGTGGCTTGAT 59.526 50.000 26.98 0.00 44.11 2.57
378 379 1.133823 TCCCGCATATGTGGCTTGATT 60.134 47.619 26.98 0.00 44.11 2.57
379 380 1.682854 CCCGCATATGTGGCTTGATTT 59.317 47.619 26.98 0.00 44.11 2.17
380 381 2.544277 CCCGCATATGTGGCTTGATTTG 60.544 50.000 26.98 9.28 44.11 2.32
381 382 2.358582 CCGCATATGTGGCTTGATTTGA 59.641 45.455 21.89 0.00 39.04 2.69
382 383 3.005050 CCGCATATGTGGCTTGATTTGAT 59.995 43.478 21.89 0.00 39.04 2.57
383 384 4.500205 CCGCATATGTGGCTTGATTTGATT 60.500 41.667 21.89 0.00 39.04 2.57
384 385 4.443063 CGCATATGTGGCTTGATTTGATTG 59.557 41.667 8.46 0.00 0.00 2.67
385 386 4.748102 GCATATGTGGCTTGATTTGATTGG 59.252 41.667 4.29 0.00 0.00 3.16
386 387 5.452216 GCATATGTGGCTTGATTTGATTGGA 60.452 40.000 4.29 0.00 0.00 3.53
387 388 6.575267 CATATGTGGCTTGATTTGATTGGAA 58.425 36.000 0.00 0.00 0.00 3.53
388 389 4.524316 TGTGGCTTGATTTGATTGGAAG 57.476 40.909 0.00 0.00 0.00 3.46
389 390 4.151121 TGTGGCTTGATTTGATTGGAAGA 58.849 39.130 0.00 0.00 0.00 2.87
390 391 4.588106 TGTGGCTTGATTTGATTGGAAGAA 59.412 37.500 0.00 0.00 0.00 2.52
391 392 5.070180 TGTGGCTTGATTTGATTGGAAGAAA 59.930 36.000 0.00 0.00 0.00 2.52
392 393 5.990996 GTGGCTTGATTTGATTGGAAGAAAA 59.009 36.000 0.00 0.00 0.00 2.29
393 394 6.652062 GTGGCTTGATTTGATTGGAAGAAAAT 59.348 34.615 0.00 0.00 0.00 1.82
394 395 7.818930 GTGGCTTGATTTGATTGGAAGAAAATA 59.181 33.333 0.00 0.00 0.00 1.40
395 396 8.373981 TGGCTTGATTTGATTGGAAGAAAATAA 58.626 29.630 0.00 0.00 0.00 1.40
396 397 8.876790 GGCTTGATTTGATTGGAAGAAAATAAG 58.123 33.333 0.00 0.00 0.00 1.73
397 398 8.876790 GCTTGATTTGATTGGAAGAAAATAAGG 58.123 33.333 0.00 0.00 0.00 2.69
398 399 8.776376 TTGATTTGATTGGAAGAAAATAAGGC 57.224 30.769 0.00 0.00 0.00 4.35
399 400 7.330262 TGATTTGATTGGAAGAAAATAAGGCC 58.670 34.615 0.00 0.00 0.00 5.19
400 401 5.675684 TTGATTGGAAGAAAATAAGGCCC 57.324 39.130 0.00 0.00 0.00 5.80
401 402 3.699038 TGATTGGAAGAAAATAAGGCCCG 59.301 43.478 0.00 0.00 0.00 6.13
402 403 2.137810 TGGAAGAAAATAAGGCCCGG 57.862 50.000 0.00 0.00 0.00 5.73
403 404 0.744874 GGAAGAAAATAAGGCCCGGC 59.255 55.000 0.00 0.00 0.00 6.13
418 419 3.922364 GGCCCCACCCCCTGAAAA 61.922 66.667 0.00 0.00 0.00 2.29
419 420 2.449777 GCCCCACCCCCTGAAAAT 59.550 61.111 0.00 0.00 0.00 1.82
420 421 1.685765 GCCCCACCCCCTGAAAATC 60.686 63.158 0.00 0.00 0.00 2.17
421 422 1.780327 CCCCACCCCCTGAAAATCA 59.220 57.895 0.00 0.00 0.00 2.57
422 423 0.324645 CCCCACCCCCTGAAAATCAG 60.325 60.000 0.32 0.32 43.91 2.90
432 433 3.939740 CTGAAAATCAGGGGGAGATGA 57.060 47.619 0.00 0.00 40.71 2.92
433 434 4.450305 CTGAAAATCAGGGGGAGATGAT 57.550 45.455 0.00 0.00 40.71 2.45
434 435 4.801164 CTGAAAATCAGGGGGAGATGATT 58.199 43.478 0.00 0.00 45.67 2.57
435 436 5.945310 CTGAAAATCAGGGGGAGATGATTA 58.055 41.667 1.20 0.00 43.56 1.75
436 437 5.945310 TGAAAATCAGGGGGAGATGATTAG 58.055 41.667 1.20 0.00 43.56 1.73
437 438 5.671735 TGAAAATCAGGGGGAGATGATTAGA 59.328 40.000 1.20 0.00 43.56 2.10
438 439 6.333702 TGAAAATCAGGGGGAGATGATTAGAT 59.666 38.462 1.20 0.00 43.56 1.98
439 440 6.793518 AAATCAGGGGGAGATGATTAGATT 57.206 37.500 1.20 0.00 43.56 2.40
440 441 7.895144 AAATCAGGGGGAGATGATTAGATTA 57.105 36.000 1.20 0.00 43.56 1.75
441 442 7.507797 AATCAGGGGGAGATGATTAGATTAG 57.492 40.000 0.00 0.00 42.77 1.73
442 443 6.233045 TCAGGGGGAGATGATTAGATTAGA 57.767 41.667 0.00 0.00 0.00 2.10
443 444 6.634041 TCAGGGGGAGATGATTAGATTAGAA 58.366 40.000 0.00 0.00 0.00 2.10
444 445 7.082316 TCAGGGGGAGATGATTAGATTAGAAA 58.918 38.462 0.00 0.00 0.00 2.52
445 446 7.572485 TCAGGGGGAGATGATTAGATTAGAAAA 59.428 37.037 0.00 0.00 0.00 2.29
446 447 7.882271 CAGGGGGAGATGATTAGATTAGAAAAG 59.118 40.741 0.00 0.00 0.00 2.27
447 448 7.796637 AGGGGGAGATGATTAGATTAGAAAAGA 59.203 37.037 0.00 0.00 0.00 2.52
448 449 8.440771 GGGGGAGATGATTAGATTAGAAAAGAA 58.559 37.037 0.00 0.00 0.00 2.52
449 450 9.853177 GGGGAGATGATTAGATTAGAAAAGAAA 57.147 33.333 0.00 0.00 0.00 2.52
465 466 8.256611 AGAAAAGAAAAAGGAAAAAGAACAGC 57.743 30.769 0.00 0.00 0.00 4.40
466 467 6.985188 AAAGAAAAAGGAAAAAGAACAGCC 57.015 33.333 0.00 0.00 0.00 4.85
467 468 4.682787 AGAAAAAGGAAAAAGAACAGCCG 58.317 39.130 0.00 0.00 0.00 5.52
468 469 4.159693 AGAAAAAGGAAAAAGAACAGCCGT 59.840 37.500 0.00 0.00 0.00 5.68
469 470 5.358725 AGAAAAAGGAAAAAGAACAGCCGTA 59.641 36.000 0.00 0.00 0.00 4.02
470 471 4.830826 AAAGGAAAAAGAACAGCCGTAG 57.169 40.909 0.00 0.00 0.00 3.51
484 485 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
485 486 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
486 487 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
487 488 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
488 489 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
489 490 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
490 491 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
491 492 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
492 493 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
493 494 2.876368 GAAGTGGGAGCACGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
494 495 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
495 496 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
496 497 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
497 498 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
498 499 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
499 500 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
500 501 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
501 502 2.910360 CACGGATGGGAGCATGGA 59.090 61.111 0.00 0.00 0.00 3.41
502 503 1.227764 CACGGATGGGAGCATGGAG 60.228 63.158 0.00 0.00 0.00 3.86
503 504 1.383109 ACGGATGGGAGCATGGAGA 60.383 57.895 0.00 0.00 0.00 3.71
504 505 1.370437 CGGATGGGAGCATGGAGAG 59.630 63.158 0.00 0.00 0.00 3.20
505 506 1.759881 GGATGGGAGCATGGAGAGG 59.240 63.158 0.00 0.00 0.00 3.69
506 507 1.759881 GATGGGAGCATGGAGAGGG 59.240 63.158 0.00 0.00 0.00 4.30
507 508 0.765903 GATGGGAGCATGGAGAGGGA 60.766 60.000 0.00 0.00 0.00 4.20
508 509 0.767446 ATGGGAGCATGGAGAGGGAG 60.767 60.000 0.00 0.00 0.00 4.30
509 510 2.817056 GGGAGCATGGAGAGGGAGC 61.817 68.421 0.00 0.00 0.00 4.70
510 511 2.068821 GGAGCATGGAGAGGGAGCA 61.069 63.158 0.00 0.00 0.00 4.26
511 512 1.446791 GAGCATGGAGAGGGAGCAG 59.553 63.158 0.00 0.00 0.00 4.24
512 513 2.042404 GAGCATGGAGAGGGAGCAGG 62.042 65.000 0.00 0.00 0.00 4.85
513 514 2.509916 CATGGAGAGGGAGCAGGC 59.490 66.667 0.00 0.00 0.00 4.85
514 515 2.041762 ATGGAGAGGGAGCAGGCA 59.958 61.111 0.00 0.00 0.00 4.75
515 516 1.617536 ATGGAGAGGGAGCAGGCAA 60.618 57.895 0.00 0.00 0.00 4.52
516 517 1.633915 ATGGAGAGGGAGCAGGCAAG 61.634 60.000 0.00 0.00 0.00 4.01
517 518 2.124778 GAGAGGGAGCAGGCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
518 519 3.695747 GAGAGGGAGCAGGCAAGCC 62.696 68.421 2.02 2.02 34.23 4.35
522 523 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
579 583 4.384208 CCAGTCTGTCCATTTAGGTTAGGG 60.384 50.000 0.00 0.00 39.02 3.53
580 584 3.780850 AGTCTGTCCATTTAGGTTAGGGG 59.219 47.826 0.00 0.00 39.02 4.79
585 589 5.290335 TGTCCATTTAGGTTAGGGGTGATA 58.710 41.667 0.00 0.00 39.02 2.15
605 609 1.706305 AGGGTTCGGTTGGGTCATTTA 59.294 47.619 0.00 0.00 0.00 1.40
606 610 2.310647 AGGGTTCGGTTGGGTCATTTAT 59.689 45.455 0.00 0.00 0.00 1.40
612 616 3.759618 TCGGTTGGGTCATTTATTTGTCC 59.240 43.478 0.00 0.00 0.00 4.02
614 618 3.119280 GGTTGGGTCATTTATTTGTCCGG 60.119 47.826 0.00 0.00 0.00 5.14
615 619 3.443145 TGGGTCATTTATTTGTCCGGT 57.557 42.857 0.00 0.00 0.00 5.28
616 620 3.349022 TGGGTCATTTATTTGTCCGGTC 58.651 45.455 0.00 0.00 0.00 4.79
617 621 3.244946 TGGGTCATTTATTTGTCCGGTCA 60.245 43.478 0.00 0.00 0.00 4.02
618 622 3.128068 GGGTCATTTATTTGTCCGGTCAC 59.872 47.826 0.00 0.00 0.00 3.67
619 623 4.007659 GGTCATTTATTTGTCCGGTCACT 58.992 43.478 0.00 0.00 0.00 3.41
621 625 5.644636 GGTCATTTATTTGTCCGGTCACTAA 59.355 40.000 0.00 0.00 0.00 2.24
622 626 6.317893 GGTCATTTATTTGTCCGGTCACTAAT 59.682 38.462 0.00 4.64 0.00 1.73
627 631 0.323633 TGTCCGGTCACTAATCGGGA 60.324 55.000 0.00 0.00 43.54 5.14
632 636 1.481871 GGTCACTAATCGGGAGGACA 58.518 55.000 0.00 0.00 0.00 4.02
633 637 2.040178 GGTCACTAATCGGGAGGACAT 58.960 52.381 0.00 0.00 0.00 3.06
638 642 4.122776 CACTAATCGGGAGGACATTTCAG 58.877 47.826 0.00 0.00 0.00 3.02
651 657 3.933332 GACATTTCAGACGTTTAGGGAGG 59.067 47.826 0.00 0.00 0.00 4.30
656 662 2.967201 TCAGACGTTTAGGGAGGAAACA 59.033 45.455 0.00 0.00 36.74 2.83
658 664 4.041198 TCAGACGTTTAGGGAGGAAACATT 59.959 41.667 0.00 0.00 36.74 2.71
715 721 1.336440 CAATCACTTTGCCGACCACAA 59.664 47.619 0.00 0.00 0.00 3.33
730 736 0.110056 CACAAGCCGCAAGACACATC 60.110 55.000 0.00 0.00 43.02 3.06
798 811 2.996621 CTGTCAGAGTCGAACAATTCCC 59.003 50.000 0.00 0.00 0.00 3.97
841 854 1.917782 GCCATTTCGCTAACACGGCA 61.918 55.000 0.00 0.00 37.98 5.69
859 880 1.261619 GCATCATCGGGCTTAGTTTCG 59.738 52.381 0.00 0.00 0.00 3.46
868 889 2.031420 GGGCTTAGTTTCGTCCACAAAC 60.031 50.000 0.00 0.00 34.47 2.93
886 907 3.062466 CACCTCCTCGTCTCGCCA 61.062 66.667 0.00 0.00 0.00 5.69
902 923 0.390735 GCCAAGCATCCAAAGGCAAG 60.391 55.000 0.00 0.00 44.59 4.01
905 926 0.114954 AAGCATCCAAAGGCAAGGGA 59.885 50.000 0.00 0.00 33.71 4.20
906 927 0.114954 AGCATCCAAAGGCAAGGGAA 59.885 50.000 0.00 0.00 33.71 3.97
907 928 0.247460 GCATCCAAAGGCAAGGGAAC 59.753 55.000 0.00 0.00 33.73 3.62
908 929 1.631405 CATCCAAAGGCAAGGGAACA 58.369 50.000 0.00 0.00 33.73 3.18
909 930 1.969923 CATCCAAAGGCAAGGGAACAA 59.030 47.619 0.00 0.00 33.73 2.83
936 957 0.386985 AAACGCGGAGAAGACGAGAC 60.387 55.000 12.47 0.00 35.15 3.36
937 958 2.276743 CGCGGAGAAGACGAGACG 60.277 66.667 0.00 0.00 32.84 4.18
938 959 2.737688 CGCGGAGAAGACGAGACGA 61.738 63.158 0.00 0.00 32.84 4.20
939 960 1.226073 GCGGAGAAGACGAGACGAC 60.226 63.158 0.00 0.00 0.00 4.34
940 961 1.909141 GCGGAGAAGACGAGACGACA 61.909 60.000 0.00 0.00 0.00 4.35
975 997 1.005215 AGAGCCAATCCAAGAACTGGG 59.995 52.381 0.00 0.00 46.44 4.45
977 999 0.613012 GCCAATCCAAGAACTGGGCT 60.613 55.000 0.00 0.00 46.44 5.19
980 1002 2.232208 CCAATCCAAGAACTGGGCTTTC 59.768 50.000 0.00 0.00 46.44 2.62
1004 1026 3.585990 CAACGGATCGGCCATGGC 61.586 66.667 29.47 29.47 41.06 4.40
1160 1182 2.610859 TCCCCCTCTTCCTGCACC 60.611 66.667 0.00 0.00 0.00 5.01
1161 1183 2.612115 CCCCCTCTTCCTGCACCT 60.612 66.667 0.00 0.00 0.00 4.00
1162 1184 2.673523 CCCCTCTTCCTGCACCTG 59.326 66.667 0.00 0.00 0.00 4.00
1163 1185 2.045536 CCCTCTTCCTGCACCTGC 60.046 66.667 0.00 0.00 42.50 4.85
1209 1241 0.462375 TGCCTGTTGTACGTCTGTGT 59.538 50.000 0.00 0.00 0.00 3.72
1215 1247 2.291190 TGTTGTACGTCTGTGTCGATCA 59.709 45.455 0.00 0.00 0.00 2.92
1216 1248 3.243134 TGTTGTACGTCTGTGTCGATCAA 60.243 43.478 0.00 0.00 0.00 2.57
1217 1249 3.197434 TGTACGTCTGTGTCGATCAAG 57.803 47.619 0.00 0.00 0.00 3.02
1218 1250 2.551032 TGTACGTCTGTGTCGATCAAGT 59.449 45.455 0.00 0.00 0.00 3.16
1219 1251 2.333389 ACGTCTGTGTCGATCAAGTC 57.667 50.000 0.00 0.00 0.00 3.01
1220 1252 1.068472 ACGTCTGTGTCGATCAAGTCC 60.068 52.381 0.00 0.00 0.00 3.85
1221 1253 1.618861 GTCTGTGTCGATCAAGTCCG 58.381 55.000 0.00 0.00 0.00 4.79
1222 1254 1.068472 GTCTGTGTCGATCAAGTCCGT 60.068 52.381 0.00 0.00 0.00 4.69
1223 1255 1.611977 TCTGTGTCGATCAAGTCCGTT 59.388 47.619 0.00 0.00 0.00 4.44
1224 1256 2.035449 TCTGTGTCGATCAAGTCCGTTT 59.965 45.455 0.00 0.00 0.00 3.60
1225 1257 2.131972 TGTGTCGATCAAGTCCGTTTG 58.868 47.619 0.00 0.00 0.00 2.93
1226 1258 2.223852 TGTGTCGATCAAGTCCGTTTGA 60.224 45.455 0.00 0.00 41.00 2.69
1227 1259 2.408704 GTGTCGATCAAGTCCGTTTGAG 59.591 50.000 0.00 0.00 40.16 3.02
1228 1260 1.390463 GTCGATCAAGTCCGTTTGAGC 59.610 52.381 0.00 1.22 40.16 4.26
1229 1261 1.272490 TCGATCAAGTCCGTTTGAGCT 59.728 47.619 0.00 0.00 40.38 4.09
1230 1262 1.656095 CGATCAAGTCCGTTTGAGCTC 59.344 52.381 6.82 6.82 40.38 4.09
1231 1263 2.003301 GATCAAGTCCGTTTGAGCTCC 58.997 52.381 12.15 0.00 39.66 4.70
1232 1264 0.034896 TCAAGTCCGTTTGAGCTCCC 59.965 55.000 12.15 0.00 32.39 4.30
1233 1265 0.955919 CAAGTCCGTTTGAGCTCCCC 60.956 60.000 12.15 0.00 0.00 4.81
1234 1266 2.434359 GTCCGTTTGAGCTCCCCG 60.434 66.667 12.15 10.34 0.00 5.73
1266 1302 2.669391 CGCCTTCTGAAGCACAAAATCC 60.669 50.000 11.93 0.00 0.00 3.01
1273 1310 4.005650 CTGAAGCACAAAATCCTGAGCTA 58.994 43.478 0.00 0.00 41.61 3.32
1295 1332 7.663905 AGCTATTTGTGTTTTGGTCAGTGTATA 59.336 33.333 0.00 0.00 0.00 1.47
1296 1333 8.458843 GCTATTTGTGTTTTGGTCAGTGTATAT 58.541 33.333 0.00 0.00 0.00 0.86
1308 1347 5.928839 GGTCAGTGTATATGCAATAGGAGTG 59.071 44.000 0.00 0.00 28.50 3.51
1310 1349 5.602561 TCAGTGTATATGCAATAGGAGTGGT 59.397 40.000 0.00 0.00 28.50 4.16
1311 1350 6.780522 TCAGTGTATATGCAATAGGAGTGGTA 59.219 38.462 0.00 0.00 28.50 3.25
1446 1485 1.122019 AGGGCCTCAACGTCAAGTCT 61.122 55.000 0.00 0.00 0.00 3.24
1488 1527 1.353694 ACTTGCTCCATCAGAAGCCTT 59.646 47.619 0.00 0.00 0.00 4.35
1615 1667 5.820423 TGTGTACATACATGCCTGATAAACC 59.180 40.000 0.00 0.00 38.63 3.27
1657 1709 7.927092 TGTGCAGTTGTACAGTTATACACTTTA 59.073 33.333 13.38 0.00 35.76 1.85
1658 1710 8.932791 GTGCAGTTGTACAGTTATACACTTTAT 58.067 33.333 0.00 0.00 34.79 1.40
1744 1801 6.832520 TCAAAATCTGCTATTGCCACTTTA 57.167 33.333 0.00 0.00 38.71 1.85
1800 1871 3.378112 TCAAAGCCATTAAGCTCAATCCG 59.622 43.478 0.00 0.00 44.11 4.18
1819 1890 2.455032 CGACCGAGATAAACTCAGCAG 58.545 52.381 0.00 0.00 45.14 4.24
1829 1900 6.963796 AGATAAACTCAGCAGAAAACACAAG 58.036 36.000 0.00 0.00 0.00 3.16
1844 1915 2.079158 CACAAGCACCATAGTGGAGTG 58.921 52.381 2.45 0.00 44.69 3.51
1898 1969 0.964358 ATCCAGGCTCACTTGCAAGC 60.964 55.000 26.27 13.13 37.80 4.01
1982 2053 9.504708 GCAAGTCTGATTATCTAGGTAGTAGTA 57.495 37.037 0.00 0.00 0.00 1.82
2016 2087 9.109533 CCATGTAAAATTCACAACTTAACGTAC 57.890 33.333 0.00 0.00 0.00 3.67
2063 2134 3.270027 TCACGACCTTGCCAAATATCTG 58.730 45.455 0.00 0.00 0.00 2.90
2085 2156 7.851508 TCTGTCGCATAAAATATGTTCTTAGC 58.148 34.615 0.00 0.00 0.00 3.09
2441 2512 1.343069 ACTTTGACTCGGCTTCTCCT 58.657 50.000 0.00 0.00 0.00 3.69
2449 2520 0.613292 TCGGCTTCTCCTTCTGCTCT 60.613 55.000 0.00 0.00 0.00 4.09
2459 2530 6.611613 TCTCCTTCTGCTCTTTTAATCTGA 57.388 37.500 0.00 0.00 0.00 3.27
2477 2548 4.961435 CTGAAGAATCTTTTCAGCCTCC 57.039 45.455 0.00 0.00 43.38 4.30
2495 2566 1.286570 CGCTTTGTCATTGGCTGCA 59.713 52.632 0.50 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.937304 CCAAACGGATAGATGCCACG 59.063 55.000 0.00 0.00 0.00 4.94
1 2 1.308998 CCCAAACGGATAGATGCCAC 58.691 55.000 0.00 0.00 0.00 5.01
2 3 0.465460 GCCCAAACGGATAGATGCCA 60.465 55.000 0.00 0.00 0.00 4.92
3 4 1.172812 GGCCCAAACGGATAGATGCC 61.173 60.000 0.00 0.00 0.00 4.40
4 5 0.179018 AGGCCCAAACGGATAGATGC 60.179 55.000 0.00 0.00 0.00 3.91
5 6 3.703001 ATAGGCCCAAACGGATAGATG 57.297 47.619 0.00 0.00 0.00 2.90
6 7 3.194968 CGTATAGGCCCAAACGGATAGAT 59.805 47.826 12.25 0.00 0.00 1.98
7 8 2.559668 CGTATAGGCCCAAACGGATAGA 59.440 50.000 12.25 0.00 0.00 1.98
8 9 2.955614 CGTATAGGCCCAAACGGATAG 58.044 52.381 12.25 0.00 0.00 2.08
13 14 0.176219 TGTCCGTATAGGCCCAAACG 59.824 55.000 12.95 12.95 40.77 3.60
14 15 1.208776 AGTGTCCGTATAGGCCCAAAC 59.791 52.381 0.00 0.00 40.77 2.93
15 16 1.483415 GAGTGTCCGTATAGGCCCAAA 59.517 52.381 0.00 0.00 40.77 3.28
16 17 1.117150 GAGTGTCCGTATAGGCCCAA 58.883 55.000 0.00 0.00 40.77 4.12
17 18 1.105167 CGAGTGTCCGTATAGGCCCA 61.105 60.000 0.00 0.00 40.77 5.36
18 19 1.658673 CGAGTGTCCGTATAGGCCC 59.341 63.158 0.00 0.00 40.77 5.80
19 20 1.007618 GCGAGTGTCCGTATAGGCC 60.008 63.158 0.00 0.00 40.77 5.19
20 21 1.370172 CGCGAGTGTCCGTATAGGC 60.370 63.158 0.00 0.00 40.77 3.93
21 22 1.162181 TCCGCGAGTGTCCGTATAGG 61.162 60.000 8.23 0.00 42.97 2.57
22 23 0.041488 GTCCGCGAGTGTCCGTATAG 60.041 60.000 8.23 0.00 0.00 1.31
23 24 1.439353 GGTCCGCGAGTGTCCGTATA 61.439 60.000 8.23 0.00 0.00 1.47
24 25 2.768492 GGTCCGCGAGTGTCCGTAT 61.768 63.158 8.23 0.00 0.00 3.06
25 26 3.434319 GGTCCGCGAGTGTCCGTA 61.434 66.667 8.23 0.00 0.00 4.02
27 28 4.778415 CTGGTCCGCGAGTGTCCG 62.778 72.222 8.23 0.00 0.00 4.79
28 29 2.711922 ATCTGGTCCGCGAGTGTCC 61.712 63.158 8.23 0.00 0.00 4.02
29 30 1.517257 CATCTGGTCCGCGAGTGTC 60.517 63.158 8.23 0.00 0.00 3.67
30 31 1.938657 CTCATCTGGTCCGCGAGTGT 61.939 60.000 8.23 0.00 0.00 3.55
31 32 1.226802 CTCATCTGGTCCGCGAGTG 60.227 63.158 8.23 0.00 0.00 3.51
32 33 2.418910 CCTCATCTGGTCCGCGAGT 61.419 63.158 8.23 0.00 0.00 4.18
33 34 1.101635 TACCTCATCTGGTCCGCGAG 61.102 60.000 8.23 0.00 41.22 5.03
34 35 1.077285 TACCTCATCTGGTCCGCGA 60.077 57.895 8.23 0.00 41.22 5.87
35 36 1.360551 CTACCTCATCTGGTCCGCG 59.639 63.158 0.00 0.00 41.22 6.46
36 37 0.103208 CACTACCTCATCTGGTCCGC 59.897 60.000 0.00 0.00 41.22 5.54
37 38 0.103208 GCACTACCTCATCTGGTCCG 59.897 60.000 0.00 0.00 41.22 4.79
38 39 0.103208 CGCACTACCTCATCTGGTCC 59.897 60.000 0.00 0.00 41.22 4.46
39 40 0.818296 ACGCACTACCTCATCTGGTC 59.182 55.000 0.00 0.00 41.22 4.02
40 41 1.066858 CAACGCACTACCTCATCTGGT 60.067 52.381 0.00 0.00 43.66 4.00
41 42 1.645034 CAACGCACTACCTCATCTGG 58.355 55.000 0.00 0.00 0.00 3.86
42 43 1.204704 TCCAACGCACTACCTCATCTG 59.795 52.381 0.00 0.00 0.00 2.90
43 44 1.478510 CTCCAACGCACTACCTCATCT 59.521 52.381 0.00 0.00 0.00 2.90
44 45 1.204941 ACTCCAACGCACTACCTCATC 59.795 52.381 0.00 0.00 0.00 2.92
45 46 1.267121 ACTCCAACGCACTACCTCAT 58.733 50.000 0.00 0.00 0.00 2.90
46 47 1.045407 AACTCCAACGCACTACCTCA 58.955 50.000 0.00 0.00 0.00 3.86
47 48 1.270147 ACAACTCCAACGCACTACCTC 60.270 52.381 0.00 0.00 0.00 3.85
48 49 0.756903 ACAACTCCAACGCACTACCT 59.243 50.000 0.00 0.00 0.00 3.08
49 50 1.145803 GACAACTCCAACGCACTACC 58.854 55.000 0.00 0.00 0.00 3.18
50 51 1.145803 GGACAACTCCAACGCACTAC 58.854 55.000 0.00 0.00 36.42 2.73
51 52 1.045407 AGGACAACTCCAACGCACTA 58.955 50.000 0.00 0.00 39.39 2.74
52 53 0.532862 CAGGACAACTCCAACGCACT 60.533 55.000 0.00 0.00 39.39 4.40
53 54 0.531974 TCAGGACAACTCCAACGCAC 60.532 55.000 0.00 0.00 39.39 5.34
54 55 0.179234 TTCAGGACAACTCCAACGCA 59.821 50.000 0.00 0.00 39.39 5.24
55 56 0.868406 CTTCAGGACAACTCCAACGC 59.132 55.000 0.00 0.00 39.39 4.84
56 57 1.512926 CCTTCAGGACAACTCCAACG 58.487 55.000 0.00 0.00 39.39 4.10
57 58 1.239347 GCCTTCAGGACAACTCCAAC 58.761 55.000 0.00 0.00 39.39 3.77
58 59 0.110486 GGCCTTCAGGACAACTCCAA 59.890 55.000 0.00 0.00 44.76 3.53
59 60 1.761174 GGCCTTCAGGACAACTCCA 59.239 57.895 0.00 0.00 44.76 3.86
60 61 4.724262 GGCCTTCAGGACAACTCC 57.276 61.111 0.00 0.00 44.76 3.85
66 67 2.183555 CGTACGGGCCTTCAGGAC 59.816 66.667 7.57 0.00 44.61 3.85
67 68 3.766691 GCGTACGGGCCTTCAGGA 61.767 66.667 18.39 0.00 37.39 3.86
96 97 4.318021 GTGCTGGCGTGTGTGCTG 62.318 66.667 0.00 0.00 34.52 4.41
123 124 1.524621 ATGTGCTGGCCGTCATAGC 60.525 57.895 5.08 5.08 37.93 2.97
124 125 1.779025 GCATGTGCTGGCCGTCATAG 61.779 60.000 0.00 0.00 38.21 2.23
125 126 1.819208 GCATGTGCTGGCCGTCATA 60.819 57.895 0.00 0.00 38.21 2.15
126 127 3.136123 GCATGTGCTGGCCGTCAT 61.136 61.111 0.00 0.00 38.21 3.06
169 170 2.052237 GTGGAGCACGCAACAACG 60.052 61.111 0.00 0.00 39.50 4.10
234 235 0.539518 TGTCATACCCGTCCACATGG 59.460 55.000 0.00 0.00 0.00 3.66
236 237 1.140852 CCATGTCATACCCGTCCACAT 59.859 52.381 0.00 0.00 0.00 3.21
259 260 3.948086 GACACGCTCGGACACCTCG 62.948 68.421 0.00 0.00 0.00 4.63
261 262 3.681835 GGACACGCTCGGACACCT 61.682 66.667 0.00 0.00 0.00 4.00
294 295 3.704545 AATTTGGGGGCAATATGAGGA 57.295 42.857 0.00 0.00 0.00 3.71
295 296 3.181452 CCAAATTTGGGGGCAATATGAGG 60.181 47.826 26.87 0.00 44.70 3.86
309 310 4.053295 CAGGCAAGTCTTGTCCAAATTTG 58.947 43.478 20.96 11.40 35.39 2.32
310 311 3.493176 GCAGGCAAGTCTTGTCCAAATTT 60.493 43.478 20.96 0.00 35.39 1.82
311 312 2.036346 GCAGGCAAGTCTTGTCCAAATT 59.964 45.455 20.96 0.57 35.39 1.82
312 313 1.615392 GCAGGCAAGTCTTGTCCAAAT 59.385 47.619 20.96 0.89 35.39 2.32
313 314 1.032014 GCAGGCAAGTCTTGTCCAAA 58.968 50.000 20.96 0.00 35.39 3.28
314 315 0.183492 AGCAGGCAAGTCTTGTCCAA 59.817 50.000 20.96 0.00 35.39 3.53
315 316 0.250467 GAGCAGGCAAGTCTTGTCCA 60.250 55.000 20.96 0.00 35.39 4.02
316 317 0.957888 GGAGCAGGCAAGTCTTGTCC 60.958 60.000 13.59 14.22 35.39 4.02
317 318 0.957888 GGGAGCAGGCAAGTCTTGTC 60.958 60.000 9.25 9.25 34.90 3.18
318 319 1.073897 GGGAGCAGGCAAGTCTTGT 59.926 57.895 14.03 0.00 0.00 3.16
319 320 0.251077 AAGGGAGCAGGCAAGTCTTG 60.251 55.000 8.31 8.31 0.00 3.02
320 321 0.037447 GAAGGGAGCAGGCAAGTCTT 59.963 55.000 0.00 0.00 0.00 3.01
321 322 1.682257 GAAGGGAGCAGGCAAGTCT 59.318 57.895 0.00 0.00 0.00 3.24
322 323 1.377856 GGAAGGGAGCAGGCAAGTC 60.378 63.158 0.00 0.00 0.00 3.01
323 324 2.759795 GGAAGGGAGCAGGCAAGT 59.240 61.111 0.00 0.00 0.00 3.16
324 325 2.044551 GGGAAGGGAGCAGGCAAG 60.045 66.667 0.00 0.00 0.00 4.01
325 326 2.240918 ATGGGAAGGGAGCAGGCAA 61.241 57.895 0.00 0.00 0.00 4.52
326 327 2.614969 ATGGGAAGGGAGCAGGCA 60.615 61.111 0.00 0.00 0.00 4.75
327 328 2.123982 CATGGGAAGGGAGCAGGC 60.124 66.667 0.00 0.00 0.00 4.85
328 329 2.123982 GCATGGGAAGGGAGCAGG 60.124 66.667 0.00 0.00 0.00 4.85
329 330 1.153005 GAGCATGGGAAGGGAGCAG 60.153 63.158 0.00 0.00 0.00 4.24
330 331 1.617536 AGAGCATGGGAAGGGAGCA 60.618 57.895 0.00 0.00 0.00 4.26
331 332 1.148048 GAGAGCATGGGAAGGGAGC 59.852 63.158 0.00 0.00 0.00 4.70
332 333 1.072015 GATGAGAGCATGGGAAGGGAG 59.928 57.143 0.00 0.00 34.11 4.30
333 334 1.135094 GATGAGAGCATGGGAAGGGA 58.865 55.000 0.00 0.00 34.11 4.20
334 335 0.110104 GGATGAGAGCATGGGAAGGG 59.890 60.000 0.00 0.00 34.11 3.95
335 336 0.250209 CGGATGAGAGCATGGGAAGG 60.250 60.000 0.00 0.00 34.11 3.46
336 337 0.467384 ACGGATGAGAGCATGGGAAG 59.533 55.000 0.00 0.00 34.11 3.46
337 338 0.178767 CACGGATGAGAGCATGGGAA 59.821 55.000 0.00 0.00 34.11 3.97
338 339 1.825341 CACGGATGAGAGCATGGGA 59.175 57.895 0.00 0.00 34.11 4.37
339 340 1.890979 GCACGGATGAGAGCATGGG 60.891 63.158 0.00 0.00 34.11 4.00
340 341 0.879400 GAGCACGGATGAGAGCATGG 60.879 60.000 0.00 0.00 34.11 3.66
341 342 0.879400 GGAGCACGGATGAGAGCATG 60.879 60.000 0.00 0.00 34.11 4.06
342 343 1.445095 GGAGCACGGATGAGAGCAT 59.555 57.895 0.00 0.00 37.47 3.79
343 344 2.725312 GGGAGCACGGATGAGAGCA 61.725 63.158 0.00 0.00 0.00 4.26
344 345 2.107953 GGGAGCACGGATGAGAGC 59.892 66.667 0.00 0.00 0.00 4.09
345 346 2.415010 CGGGAGCACGGATGAGAG 59.585 66.667 0.00 0.00 0.00 3.20
357 358 0.179048 TCAAGCCACATATGCGGGAG 60.179 55.000 16.14 6.68 0.00 4.30
358 359 0.473755 ATCAAGCCACATATGCGGGA 59.526 50.000 16.14 4.31 0.00 5.14
359 360 1.321474 AATCAAGCCACATATGCGGG 58.679 50.000 11.69 10.35 0.00 6.13
360 361 2.358582 TCAAATCAAGCCACATATGCGG 59.641 45.455 5.33 5.33 0.00 5.69
361 362 3.696281 TCAAATCAAGCCACATATGCG 57.304 42.857 1.58 0.00 0.00 4.73
362 363 4.748102 CCAATCAAATCAAGCCACATATGC 59.252 41.667 1.58 0.00 0.00 3.14
363 364 6.151663 TCCAATCAAATCAAGCCACATATG 57.848 37.500 0.00 0.00 0.00 1.78
364 365 6.608405 TCTTCCAATCAAATCAAGCCACATAT 59.392 34.615 0.00 0.00 0.00 1.78
365 366 5.951148 TCTTCCAATCAAATCAAGCCACATA 59.049 36.000 0.00 0.00 0.00 2.29
366 367 4.773674 TCTTCCAATCAAATCAAGCCACAT 59.226 37.500 0.00 0.00 0.00 3.21
367 368 4.151121 TCTTCCAATCAAATCAAGCCACA 58.849 39.130 0.00 0.00 0.00 4.17
368 369 4.789012 TCTTCCAATCAAATCAAGCCAC 57.211 40.909 0.00 0.00 0.00 5.01
369 370 5.804944 TTTCTTCCAATCAAATCAAGCCA 57.195 34.783 0.00 0.00 0.00 4.75
370 371 8.776376 TTATTTTCTTCCAATCAAATCAAGCC 57.224 30.769 0.00 0.00 0.00 4.35
371 372 8.876790 CCTTATTTTCTTCCAATCAAATCAAGC 58.123 33.333 0.00 0.00 0.00 4.01
372 373 8.876790 GCCTTATTTTCTTCCAATCAAATCAAG 58.123 33.333 0.00 0.00 0.00 3.02
373 374 7.823799 GGCCTTATTTTCTTCCAATCAAATCAA 59.176 33.333 0.00 0.00 0.00 2.57
374 375 7.330262 GGCCTTATTTTCTTCCAATCAAATCA 58.670 34.615 0.00 0.00 0.00 2.57
375 376 6.763135 GGGCCTTATTTTCTTCCAATCAAATC 59.237 38.462 0.84 0.00 0.00 2.17
376 377 6.630188 CGGGCCTTATTTTCTTCCAATCAAAT 60.630 38.462 0.84 0.00 0.00 2.32
377 378 5.337169 CGGGCCTTATTTTCTTCCAATCAAA 60.337 40.000 0.84 0.00 0.00 2.69
378 379 4.159506 CGGGCCTTATTTTCTTCCAATCAA 59.840 41.667 0.84 0.00 0.00 2.57
379 380 3.699038 CGGGCCTTATTTTCTTCCAATCA 59.301 43.478 0.84 0.00 0.00 2.57
380 381 3.068165 CCGGGCCTTATTTTCTTCCAATC 59.932 47.826 0.84 0.00 0.00 2.67
381 382 3.031013 CCGGGCCTTATTTTCTTCCAAT 58.969 45.455 0.84 0.00 0.00 3.16
382 383 2.452505 CCGGGCCTTATTTTCTTCCAA 58.547 47.619 0.84 0.00 0.00 3.53
383 384 1.958069 GCCGGGCCTTATTTTCTTCCA 60.958 52.381 8.12 0.00 0.00 3.53
384 385 0.744874 GCCGGGCCTTATTTTCTTCC 59.255 55.000 8.12 0.00 0.00 3.46
385 386 0.744874 GGCCGGGCCTTATTTTCTTC 59.255 55.000 30.86 0.00 46.69 2.87
386 387 2.896278 GGCCGGGCCTTATTTTCTT 58.104 52.632 30.86 0.00 46.69 2.52
387 388 4.678423 GGCCGGGCCTTATTTTCT 57.322 55.556 30.86 0.00 46.69 2.52
401 402 3.252585 ATTTTCAGGGGGTGGGGCC 62.253 63.158 0.00 0.00 0.00 5.80
402 403 1.685765 GATTTTCAGGGGGTGGGGC 60.686 63.158 0.00 0.00 0.00 5.80
403 404 0.324645 CTGATTTTCAGGGGGTGGGG 60.325 60.000 0.00 0.00 40.71 4.96
404 405 3.288099 CTGATTTTCAGGGGGTGGG 57.712 57.895 0.00 0.00 40.71 4.61
412 413 3.939740 TCATCTCCCCCTGATTTTCAG 57.060 47.619 0.00 0.00 43.91 3.02
413 414 4.886755 AATCATCTCCCCCTGATTTTCA 57.113 40.909 0.00 0.00 38.60 2.69
414 415 6.192970 TCTAATCATCTCCCCCTGATTTTC 57.807 41.667 3.40 0.00 41.22 2.29
415 416 6.793518 ATCTAATCATCTCCCCCTGATTTT 57.206 37.500 3.40 0.00 41.22 1.82
416 417 6.793518 AATCTAATCATCTCCCCCTGATTT 57.206 37.500 3.40 0.00 41.22 2.17
417 418 7.259391 TCTAATCTAATCATCTCCCCCTGATT 58.741 38.462 3.57 3.57 42.92 2.57
418 419 6.820205 TCTAATCTAATCATCTCCCCCTGAT 58.180 40.000 0.00 0.00 33.59 2.90
419 420 6.233045 TCTAATCTAATCATCTCCCCCTGA 57.767 41.667 0.00 0.00 0.00 3.86
420 421 6.942163 TTCTAATCTAATCATCTCCCCCTG 57.058 41.667 0.00 0.00 0.00 4.45
421 422 7.796637 TCTTTTCTAATCTAATCATCTCCCCCT 59.203 37.037 0.00 0.00 0.00 4.79
422 423 7.978925 TCTTTTCTAATCTAATCATCTCCCCC 58.021 38.462 0.00 0.00 0.00 5.40
423 424 9.853177 TTTCTTTTCTAATCTAATCATCTCCCC 57.147 33.333 0.00 0.00 0.00 4.81
439 440 9.366216 GCTGTTCTTTTTCCTTTTTCTTTTCTA 57.634 29.630 0.00 0.00 0.00 2.10
440 441 7.334421 GGCTGTTCTTTTTCCTTTTTCTTTTCT 59.666 33.333 0.00 0.00 0.00 2.52
441 442 7.464358 GGCTGTTCTTTTTCCTTTTTCTTTTC 58.536 34.615 0.00 0.00 0.00 2.29
442 443 6.092122 CGGCTGTTCTTTTTCCTTTTTCTTTT 59.908 34.615 0.00 0.00 0.00 2.27
443 444 5.580691 CGGCTGTTCTTTTTCCTTTTTCTTT 59.419 36.000 0.00 0.00 0.00 2.52
444 445 5.109210 CGGCTGTTCTTTTTCCTTTTTCTT 58.891 37.500 0.00 0.00 0.00 2.52
445 446 4.159693 ACGGCTGTTCTTTTTCCTTTTTCT 59.840 37.500 0.00 0.00 0.00 2.52
446 447 4.430007 ACGGCTGTTCTTTTTCCTTTTTC 58.570 39.130 0.00 0.00 0.00 2.29
447 448 4.465632 ACGGCTGTTCTTTTTCCTTTTT 57.534 36.364 0.00 0.00 0.00 1.94
448 449 4.037565 CCTACGGCTGTTCTTTTTCCTTTT 59.962 41.667 1.99 0.00 0.00 2.27
449 450 3.568430 CCTACGGCTGTTCTTTTTCCTTT 59.432 43.478 1.99 0.00 0.00 3.11
450 451 3.146847 CCTACGGCTGTTCTTTTTCCTT 58.853 45.455 1.99 0.00 0.00 3.36
451 452 2.370849 TCCTACGGCTGTTCTTTTTCCT 59.629 45.455 1.99 0.00 0.00 3.36
452 453 2.774687 TCCTACGGCTGTTCTTTTTCC 58.225 47.619 1.99 0.00 0.00 3.13
453 454 4.000988 TCATCCTACGGCTGTTCTTTTTC 58.999 43.478 1.99 0.00 0.00 2.29
454 455 4.015872 TCATCCTACGGCTGTTCTTTTT 57.984 40.909 1.99 0.00 0.00 1.94
455 456 3.695830 TCATCCTACGGCTGTTCTTTT 57.304 42.857 1.99 0.00 0.00 2.27
456 457 3.008049 ACTTCATCCTACGGCTGTTCTTT 59.992 43.478 1.99 0.00 0.00 2.52
457 458 2.567615 ACTTCATCCTACGGCTGTTCTT 59.432 45.455 1.99 0.00 0.00 2.52
458 459 2.093973 CACTTCATCCTACGGCTGTTCT 60.094 50.000 1.99 0.00 0.00 3.01
459 460 2.271800 CACTTCATCCTACGGCTGTTC 58.728 52.381 1.99 0.00 0.00 3.18
460 461 1.066143 CCACTTCATCCTACGGCTGTT 60.066 52.381 1.99 0.00 0.00 3.16
461 462 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
462 463 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
463 464 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
464 465 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
465 466 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
466 467 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
467 468 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
468 469 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
469 470 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
470 471 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
471 472 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
472 473 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
473 474 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
474 475 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
475 476 2.671070 CCATCCGTGCTCCCACTT 59.329 61.111 0.00 0.00 39.86 3.16
476 477 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
477 478 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
478 479 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
479 480 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
480 481 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
481 482 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
482 483 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
483 484 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
484 485 1.227764 CTCCATGCTCCCATCCGTG 60.228 63.158 0.00 0.00 0.00 4.94
485 486 1.383109 TCTCCATGCTCCCATCCGT 60.383 57.895 0.00 0.00 0.00 4.69
486 487 1.370437 CTCTCCATGCTCCCATCCG 59.630 63.158 0.00 0.00 0.00 4.18
487 488 1.759881 CCTCTCCATGCTCCCATCC 59.240 63.158 0.00 0.00 0.00 3.51
488 489 0.765903 TCCCTCTCCATGCTCCCATC 60.766 60.000 0.00 0.00 0.00 3.51
489 490 0.767446 CTCCCTCTCCATGCTCCCAT 60.767 60.000 0.00 0.00 0.00 4.00
490 491 1.383664 CTCCCTCTCCATGCTCCCA 60.384 63.158 0.00 0.00 0.00 4.37
491 492 2.817056 GCTCCCTCTCCATGCTCCC 61.817 68.421 0.00 0.00 0.00 4.30
492 493 2.042404 CTGCTCCCTCTCCATGCTCC 62.042 65.000 0.00 0.00 0.00 4.70
493 494 1.446791 CTGCTCCCTCTCCATGCTC 59.553 63.158 0.00 0.00 0.00 4.26
494 495 2.071262 CCTGCTCCCTCTCCATGCT 61.071 63.158 0.00 0.00 0.00 3.79
495 496 2.509916 CCTGCTCCCTCTCCATGC 59.490 66.667 0.00 0.00 0.00 4.06
496 497 1.918467 TTGCCTGCTCCCTCTCCATG 61.918 60.000 0.00 0.00 0.00 3.66
497 498 1.617536 TTGCCTGCTCCCTCTCCAT 60.618 57.895 0.00 0.00 0.00 3.41
498 499 2.203983 TTGCCTGCTCCCTCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
499 500 2.588989 CTTGCCTGCTCCCTCTCC 59.411 66.667 0.00 0.00 0.00 3.71
500 501 2.124778 GCTTGCCTGCTCCCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
501 502 3.726144 GGCTTGCCTGCTCCCTCT 61.726 66.667 4.11 0.00 0.00 3.69
505 506 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
506 507 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
507 508 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
509 510 4.883354 GGGGATCCGGCTTGCCTG 62.883 72.222 5.45 3.29 0.00 4.85
512 513 3.955543 TTTGGGGGATCCGGCTTGC 62.956 63.158 5.45 0.00 38.76 4.01
513 514 0.687427 AATTTGGGGGATCCGGCTTG 60.687 55.000 5.45 0.00 38.76 4.01
514 515 0.042581 AAATTTGGGGGATCCGGCTT 59.957 50.000 5.45 0.00 38.76 4.35
515 516 0.930726 TAAATTTGGGGGATCCGGCT 59.069 50.000 5.45 0.00 38.76 5.52
516 517 1.328279 CTAAATTTGGGGGATCCGGC 58.672 55.000 5.45 0.00 38.76 6.13
517 518 2.174854 AGACTAAATTTGGGGGATCCGG 59.825 50.000 5.45 0.00 38.76 5.14
518 519 3.118038 TGAGACTAAATTTGGGGGATCCG 60.118 47.826 5.45 0.00 38.76 4.18
519 520 4.079730 ACTGAGACTAAATTTGGGGGATCC 60.080 45.833 1.92 1.92 0.00 3.36
520 521 5.117406 ACTGAGACTAAATTTGGGGGATC 57.883 43.478 6.50 0.00 0.00 3.36
521 522 5.536497 AACTGAGACTAAATTTGGGGGAT 57.464 39.130 6.50 0.00 0.00 3.85
522 523 5.076873 CAAACTGAGACTAAATTTGGGGGA 58.923 41.667 6.50 0.00 0.00 4.81
563 564 4.790718 ATCACCCCTAACCTAAATGGAC 57.209 45.455 0.00 0.00 39.71 4.02
579 583 0.107361 CCCAACCGAACCCTATCACC 60.107 60.000 0.00 0.00 0.00 4.02
580 584 0.616891 ACCCAACCGAACCCTATCAC 59.383 55.000 0.00 0.00 0.00 3.06
585 589 0.481128 AAATGACCCAACCGAACCCT 59.519 50.000 0.00 0.00 0.00 4.34
605 609 2.419574 CCCGATTAGTGACCGGACAAAT 60.420 50.000 9.46 5.93 45.58 2.32
606 610 1.066716 CCCGATTAGTGACCGGACAAA 60.067 52.381 9.46 0.00 45.58 2.83
612 616 0.384669 GTCCTCCCGATTAGTGACCG 59.615 60.000 0.00 0.00 0.00 4.79
614 618 3.821421 AATGTCCTCCCGATTAGTGAC 57.179 47.619 0.00 0.00 0.00 3.67
615 619 3.772572 TGAAATGTCCTCCCGATTAGTGA 59.227 43.478 0.00 0.00 0.00 3.41
616 620 4.122776 CTGAAATGTCCTCCCGATTAGTG 58.877 47.826 0.00 0.00 0.00 2.74
617 621 4.030913 TCTGAAATGTCCTCCCGATTAGT 58.969 43.478 0.00 0.00 0.00 2.24
618 622 4.372656 GTCTGAAATGTCCTCCCGATTAG 58.627 47.826 0.00 0.00 0.00 1.73
619 623 3.181479 CGTCTGAAATGTCCTCCCGATTA 60.181 47.826 0.00 0.00 0.00 1.75
621 625 1.137086 CGTCTGAAATGTCCTCCCGAT 59.863 52.381 0.00 0.00 0.00 4.18
622 626 0.530744 CGTCTGAAATGTCCTCCCGA 59.469 55.000 0.00 0.00 0.00 5.14
627 631 3.581332 TCCCTAAACGTCTGAAATGTCCT 59.419 43.478 0.00 0.00 0.00 3.85
632 636 4.903045 TTCCTCCCTAAACGTCTGAAAT 57.097 40.909 0.00 0.00 0.00 2.17
633 637 4.141665 TGTTTCCTCCCTAAACGTCTGAAA 60.142 41.667 0.00 0.00 39.23 2.69
638 642 4.070009 ACAATGTTTCCTCCCTAAACGTC 58.930 43.478 0.00 0.00 39.23 4.34
651 657 4.697352 ACAGCATCTAGGACACAATGTTTC 59.303 41.667 0.00 0.00 0.00 2.78
656 662 6.239217 TGATTACAGCATCTAGGACACAAT 57.761 37.500 0.00 0.00 0.00 2.71
658 664 5.046663 TGTTGATTACAGCATCTAGGACACA 60.047 40.000 0.00 0.00 32.65 3.72
715 721 2.037136 GCAGATGTGTCTTGCGGCT 61.037 57.895 0.00 0.00 30.42 5.52
730 736 1.815003 GGGAAGGTGATGTTTCTGCAG 59.185 52.381 7.63 7.63 0.00 4.41
798 811 0.449388 GAAATCAGGAGGCGTGCTTG 59.551 55.000 0.00 0.00 0.00 4.01
841 854 2.483188 GGACGAAACTAAGCCCGATGAT 60.483 50.000 0.00 0.00 0.00 2.45
859 880 0.602905 CGAGGAGGTGGTTTGTGGAC 60.603 60.000 0.00 0.00 0.00 4.02
868 889 3.827898 GGCGAGACGAGGAGGTGG 61.828 72.222 0.00 0.00 0.00 4.61
886 907 0.114954 TCCCTTGCCTTTGGATGCTT 59.885 50.000 0.00 0.00 0.00 3.91
902 923 2.131972 GCGTTTGATTGGTTTGTTCCC 58.868 47.619 0.00 0.00 0.00 3.97
905 926 1.405821 TCCGCGTTTGATTGGTTTGTT 59.594 42.857 4.92 0.00 0.00 2.83
906 927 1.001815 CTCCGCGTTTGATTGGTTTGT 60.002 47.619 4.92 0.00 0.00 2.83
907 928 1.265635 TCTCCGCGTTTGATTGGTTTG 59.734 47.619 4.92 0.00 0.00 2.93
908 929 1.600023 TCTCCGCGTTTGATTGGTTT 58.400 45.000 4.92 0.00 0.00 3.27
909 930 1.535462 CTTCTCCGCGTTTGATTGGTT 59.465 47.619 4.92 0.00 0.00 3.67
936 957 2.690497 TCTAGAAATCCTGGAGCTGTCG 59.310 50.000 1.52 0.00 0.00 4.35
937 958 4.320608 CTCTAGAAATCCTGGAGCTGTC 57.679 50.000 1.52 0.00 42.37 3.51
975 997 1.468914 GATCCGTTGTCCCAAGAAAGC 59.531 52.381 0.00 0.00 0.00 3.51
977 999 1.609580 CCGATCCGTTGTCCCAAGAAA 60.610 52.381 0.00 0.00 0.00 2.52
980 1002 2.106683 GCCGATCCGTTGTCCCAAG 61.107 63.158 0.00 0.00 0.00 3.61
1196 1218 3.004002 ACTTGATCGACACAGACGTACAA 59.996 43.478 0.00 0.00 0.00 2.41
1209 1241 1.272490 AGCTCAAACGGACTTGATCGA 59.728 47.619 0.00 0.00 34.86 3.59
1215 1247 1.375326 GGGGAGCTCAAACGGACTT 59.625 57.895 17.19 0.00 0.00 3.01
1216 1248 2.943978 CGGGGAGCTCAAACGGACT 61.944 63.158 17.19 0.00 0.00 3.85
1217 1249 2.434359 CGGGGAGCTCAAACGGAC 60.434 66.667 17.19 0.00 0.00 4.79
1218 1250 2.211410 TTCGGGGAGCTCAAACGGA 61.211 57.895 17.19 8.44 0.00 4.69
1219 1251 2.033194 GTTCGGGGAGCTCAAACGG 61.033 63.158 17.19 9.49 0.00 4.44
1220 1252 0.602905 AAGTTCGGGGAGCTCAAACG 60.603 55.000 17.19 15.97 0.00 3.60
1221 1253 2.074576 GTAAGTTCGGGGAGCTCAAAC 58.925 52.381 17.19 13.22 0.00 2.93
1222 1254 1.337447 CGTAAGTTCGGGGAGCTCAAA 60.337 52.381 17.19 0.93 0.00 2.69
1223 1255 0.245539 CGTAAGTTCGGGGAGCTCAA 59.754 55.000 17.19 0.00 0.00 3.02
1224 1256 1.601419 CCGTAAGTTCGGGGAGCTCA 61.601 60.000 17.19 0.00 45.88 4.26
1225 1257 1.141234 CCGTAAGTTCGGGGAGCTC 59.859 63.158 4.71 4.71 45.88 4.09
1226 1258 3.295800 CCGTAAGTTCGGGGAGCT 58.704 61.111 0.00 0.00 45.88 4.09
1233 1265 0.109412 AGAAGGCGTCCGTAAGTTCG 60.109 55.000 0.00 0.00 35.33 3.95
1234 1266 1.068055 TCAGAAGGCGTCCGTAAGTTC 60.068 52.381 0.00 0.00 0.00 3.01
1266 1302 5.009010 ACTGACCAAAACACAAATAGCTCAG 59.991 40.000 0.00 0.00 0.00 3.35
1273 1310 7.090173 GCATATACACTGACCAAAACACAAAT 58.910 34.615 0.00 0.00 0.00 2.32
1295 1332 9.420118 TCAAAAATAATACCACTCCTATTGCAT 57.580 29.630 0.00 0.00 0.00 3.96
1296 1333 8.815565 TCAAAAATAATACCACTCCTATTGCA 57.184 30.769 0.00 0.00 0.00 4.08
1431 1470 3.512680 GGTATCAGACTTGACGTTGAGG 58.487 50.000 0.00 0.00 35.83 3.86
1446 1485 1.005037 GCATGGCGATCGGGTATCA 60.005 57.895 18.30 0.00 33.87 2.15
1615 1667 5.927030 ACTGCACACTGTAAATTCAATACG 58.073 37.500 0.00 0.00 0.00 3.06
1657 1709 6.014242 TCCACGCTCTTAATTCCTGATGATAT 60.014 38.462 0.00 0.00 0.00 1.63
1658 1710 5.304357 TCCACGCTCTTAATTCCTGATGATA 59.696 40.000 0.00 0.00 0.00 2.15
1659 1711 4.101585 TCCACGCTCTTAATTCCTGATGAT 59.898 41.667 0.00 0.00 0.00 2.45
1660 1712 3.450817 TCCACGCTCTTAATTCCTGATGA 59.549 43.478 0.00 0.00 0.00 2.92
1661 1713 3.557595 GTCCACGCTCTTAATTCCTGATG 59.442 47.826 0.00 0.00 0.00 3.07
1677 1734 1.155889 TGCTACAATTGCAGTCCACG 58.844 50.000 5.05 0.00 35.31 4.94
1744 1801 5.008331 AGAATGATGTGCAGTTGTTCTCAT 58.992 37.500 0.00 0.00 0.00 2.90
1778 1846 3.378112 CGGATTGAGCTTAATGGCTTTGA 59.622 43.478 8.68 0.00 43.20 2.69
1787 1855 2.097036 TCTCGGTCGGATTGAGCTTAA 58.903 47.619 0.00 0.00 43.02 1.85
1819 1890 3.568007 TCCACTATGGTGCTTGTGTTTTC 59.432 43.478 3.19 0.00 41.75 2.29
1829 1900 1.676014 GGTGACACTCCACTATGGTGC 60.676 57.143 3.19 0.00 41.75 5.01
1898 1969 3.411446 TCCTGAATGGTACTTGTTGCTG 58.589 45.455 0.00 0.00 37.07 4.41
1982 2053 6.707440 TGTGAATTTTACATGGTGTGAACT 57.293 33.333 0.00 0.00 0.00 3.01
1983 2054 6.978080 AGTTGTGAATTTTACATGGTGTGAAC 59.022 34.615 0.00 0.00 0.00 3.18
1984 2055 7.106439 AGTTGTGAATTTTACATGGTGTGAA 57.894 32.000 0.00 0.00 0.00 3.18
1985 2056 6.707440 AGTTGTGAATTTTACATGGTGTGA 57.293 33.333 0.00 0.00 0.00 3.58
1986 2057 8.751335 GTTAAGTTGTGAATTTTACATGGTGTG 58.249 33.333 0.00 0.00 0.00 3.82
2016 2087 9.784680 AGTAATTTATCTACGTGTGTGAACTAG 57.215 33.333 0.00 0.00 0.00 2.57
2063 2134 6.646636 ACGCTAAGAACATATTTTATGCGAC 58.353 36.000 0.00 0.00 41.79 5.19
2080 2151 6.479990 TCTTCATCATTCACCATTACGCTAAG 59.520 38.462 0.00 0.00 0.00 2.18
2085 2156 6.668541 AGTTCTTCATCATTCACCATTACG 57.331 37.500 0.00 0.00 0.00 3.18
2441 2512 9.512588 AAGATTCTTCAGATTAAAAGAGCAGAA 57.487 29.630 0.00 0.00 33.32 3.02
2459 2530 2.087646 GCGGAGGCTGAAAAGATTCTT 58.912 47.619 0.00 0.00 36.48 2.52
2477 2548 0.731514 CTGCAGCCAATGACAAAGCG 60.732 55.000 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.