Multiple sequence alignment - TraesCS5D01G195800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G195800 chr5D 100.000 7229 0 0 1 7229 299408411 299415639 0.000000e+00 13350
1 TraesCS5D01G195800 chr5A 93.786 3090 102 38 7 3048 396683213 396686260 0.000000e+00 4560
2 TraesCS5D01G195800 chr5A 95.500 1489 51 6 3907 5388 396687083 396688562 0.000000e+00 2364
3 TraesCS5D01G195800 chr5A 89.865 1332 62 28 5538 6831 396688828 396690124 0.000000e+00 1644
4 TraesCS5D01G195800 chr5A 92.593 297 21 1 3406 3702 396686601 396686896 6.700000e-115 425
5 TraesCS5D01G195800 chr5A 90.031 321 24 5 3099 3419 396686274 396686586 6.750000e-110 409
6 TraesCS5D01G195800 chr5A 87.179 312 16 7 6830 7127 396690168 396690469 4.180000e-87 333
7 TraesCS5D01G195800 chr5A 93.443 122 8 0 5421 5542 396688564 396688685 1.600000e-41 182
8 TraesCS5D01G195800 chr5B 94.708 2343 81 19 729 3045 340625788 340628113 0.000000e+00 3600
9 TraesCS5D01G195800 chr5B 95.280 1949 54 11 3907 5838 340628992 340630919 0.000000e+00 3055
10 TraesCS5D01G195800 chr5B 89.645 985 45 29 5797 6780 340630914 340631842 0.000000e+00 1201
11 TraesCS5D01G195800 chr5B 91.549 568 19 9 7 556 340624798 340625354 0.000000e+00 756
12 TraesCS5D01G195800 chr5B 85.876 531 39 10 3084 3587 340628123 340628644 3.840000e-147 532
13 TraesCS5D01G195800 chr5B 87.624 202 11 4 6931 7127 340635634 340635826 9.440000e-54 222
14 TraesCS5D01G195800 chr5B 95.413 109 4 1 3594 3702 340628698 340628805 9.640000e-39 172
15 TraesCS5D01G195800 chr4A 95.181 332 16 0 4155 4486 200168952 200169283 6.420000e-145 525
16 TraesCS5D01G195800 chr4A 93.458 107 7 0 3805 3911 666944574 666944680 7.510000e-35 159
17 TraesCS5D01G195800 chr7B 97.030 101 3 0 3812 3912 589348417 589348317 3.470000e-38 171
18 TraesCS5D01G195800 chr7A 96.154 104 3 1 3812 3915 178029851 178029749 1.250000e-37 169
19 TraesCS5D01G195800 chr1A 95.283 106 5 0 3805 3910 351606753 351606858 1.250000e-37 169
20 TraesCS5D01G195800 chr6B 93.694 111 7 0 3807 3917 529769695 529769805 4.490000e-37 167
21 TraesCS5D01G195800 chr2B 93.636 110 7 0 3814 3923 53476114 53476223 1.610000e-36 165
22 TraesCS5D01G195800 chr2B 93.578 109 6 1 3809 3917 63293192 63293085 2.090000e-35 161
23 TraesCS5D01G195800 chr3B 92.241 116 8 1 3799 3913 548551265 548551150 5.800000e-36 163
24 TraesCS5D01G195800 chr1B 92.105 114 9 0 3807 3920 368408260 368408373 2.090000e-35 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G195800 chr5D 299408411 299415639 7228 False 13350.000000 13350 100.000000 1 7229 1 chr5D.!!$F1 7228
1 TraesCS5D01G195800 chr5A 396683213 396690469 7256 False 1416.714286 4560 91.771000 7 7127 7 chr5A.!!$F1 7120
2 TraesCS5D01G195800 chr5B 340624798 340635826 11028 False 1362.571429 3600 91.442143 7 7127 7 chr5B.!!$F1 7120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 270 0.248866 CTCAACCAAACGCAACCACC 60.249 55.0 0.00 0.0 0.00 4.61 F
927 1232 0.924090 GAGCTGATTCGACGCGATTT 59.076 50.0 15.93 0.0 35.23 2.17 F
1389 1720 0.546122 TGTGCCTCTTCCACAGTGTT 59.454 50.0 0.00 0.0 38.21 3.32 F
2236 2574 0.613260 TGTGGGACTAGTGGCATGAC 59.387 55.0 0.00 0.0 0.00 3.06 F
3830 4353 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.0 0.00 0.0 0.00 3.28 F
3831 4354 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.0 0.00 0.0 0.00 2.44 F
5598 6275 0.963962 AGGCAATGTTGGTGCTTGAG 59.036 50.0 0.00 0.0 41.88 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1373 1704 0.536006 AGCAACACTGTGGAAGAGGC 60.536 55.0 13.09 6.18 0.00 4.70 R
2879 3221 1.021202 CTGGCTAGACTCAGTCCTCG 58.979 60.0 0.00 0.00 32.18 4.63 R
3301 3645 0.817654 TCGAGTGCAGATACCTGGTG 59.182 55.0 10.23 0.00 40.72 4.17 R
3482 3881 0.042131 AGGACGTAGGTGGGGAATCA 59.958 55.0 0.00 0.00 0.00 2.57 R
5598 6275 0.610232 AACCAAGCAGCATCCCAGTC 60.610 55.0 0.00 0.00 0.00 3.51 R
5604 6281 5.229423 TGAACAATTTAACCAAGCAGCATC 58.771 37.5 0.00 0.00 0.00 3.91 R
7173 11627 0.036010 GCAGCTGGACTCAAGCCTAA 60.036 55.0 17.12 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 206 5.557136 GCATGCATAAACTAGTCATCACGTC 60.557 44.000 14.21 0.00 0.00 4.34
197 209 1.992170 AAACTAGTCATCACGTCGCC 58.008 50.000 0.00 0.00 0.00 5.54
258 270 0.248866 CTCAACCAAACGCAACCACC 60.249 55.000 0.00 0.00 0.00 4.61
259 271 0.965866 TCAACCAAACGCAACCACCA 60.966 50.000 0.00 0.00 0.00 4.17
567 610 5.810034 GCTTATTATTATTCCCCACTCCCCC 60.810 48.000 0.00 0.00 0.00 5.40
594 637 2.287427 TCCCTCCCTCCCCGACTA 60.287 66.667 0.00 0.00 0.00 2.59
800 1104 1.002659 TGTGATTTGACGGGATTCGGT 59.997 47.619 0.00 0.00 44.45 4.69
866 1171 3.292159 GGGGACGTGGGTGTTTGC 61.292 66.667 0.00 0.00 0.00 3.68
927 1232 0.924090 GAGCTGATTCGACGCGATTT 59.076 50.000 15.93 0.00 35.23 2.17
968 1282 1.733041 CGTGAGGCTCTTTTCGCGA 60.733 57.895 16.72 3.71 46.91 5.87
969 1283 1.678269 CGTGAGGCTCTTTTCGCGAG 61.678 60.000 16.72 0.00 46.91 5.03
970 1284 1.079819 TGAGGCTCTTTTCGCGAGG 60.080 57.895 16.72 4.10 0.00 4.63
971 1285 1.811679 GAGGCTCTTTTCGCGAGGG 60.812 63.158 9.59 0.00 0.00 4.30
972 1286 2.820037 GGCTCTTTTCGCGAGGGG 60.820 66.667 9.59 5.07 0.00 4.79
973 1287 2.820037 GCTCTTTTCGCGAGGGGG 60.820 66.667 9.59 4.68 0.00 5.40
1370 1701 3.485394 TGTTAATGCTGATGGTGTGTGT 58.515 40.909 0.00 0.00 0.00 3.72
1371 1702 3.252944 TGTTAATGCTGATGGTGTGTGTG 59.747 43.478 0.00 0.00 0.00 3.82
1372 1703 1.985473 AATGCTGATGGTGTGTGTGT 58.015 45.000 0.00 0.00 0.00 3.72
1373 1704 1.241165 ATGCTGATGGTGTGTGTGTG 58.759 50.000 0.00 0.00 0.00 3.82
1389 1720 0.546122 TGTGCCTCTTCCACAGTGTT 59.454 50.000 0.00 0.00 38.21 3.32
1559 1893 1.078201 GGCGGTTACGGTTCGTTAGG 61.078 60.000 0.00 0.00 41.54 2.69
1822 2156 3.000041 TCTGTTAATGGTGATGACGTGC 59.000 45.455 0.00 0.00 0.00 5.34
1902 2236 4.282195 AGCTGAGCTGTTAGTCTGTTAGTT 59.718 41.667 5.97 0.00 37.57 2.24
1923 2257 7.417496 AGTTGGTTACAGTTCGTTAGATTTC 57.583 36.000 0.00 0.00 0.00 2.17
2084 2422 3.880490 AGTATGACAAGCCGACAAAACAA 59.120 39.130 0.00 0.00 0.00 2.83
2236 2574 0.613260 TGTGGGACTAGTGGCATGAC 59.387 55.000 0.00 0.00 0.00 3.06
2417 2755 7.167535 TGATTTTGTTGATGTCATCTCCTGTA 58.832 34.615 13.90 0.00 0.00 2.74
2523 2863 6.260493 GGAATGCATGAGAGATCAATATAGCC 59.740 42.308 0.00 0.00 0.00 3.93
2610 2951 9.261035 TGGATCTCAGATAGATAATTTAGGTCC 57.739 37.037 0.00 0.00 45.35 4.46
2754 3095 8.758633 TTGTAATCTAAAGTAGACAAGAGCAC 57.241 34.615 0.00 0.00 37.69 4.40
2809 3151 3.681897 CAGTCCTTGTTGATTCTTCTCCG 59.318 47.826 0.00 0.00 0.00 4.63
2816 3158 1.730501 TGATTCTTCTCCGCTTGCTG 58.269 50.000 0.00 0.00 0.00 4.41
2879 3221 7.011109 GCATATTAACATGGTACCGGATGATAC 59.989 40.741 16.94 0.00 0.00 2.24
3048 3392 8.932791 CCGTAGTTTCTGTCATGTTTATTAACT 58.067 33.333 0.00 0.00 35.24 2.24
3049 3393 9.953825 CGTAGTTTCTGTCATGTTTATTAACTC 57.046 33.333 0.00 0.00 35.24 3.01
3056 3400 9.391006 TCTGTCATGTTTATTAACTCATAACCC 57.609 33.333 0.00 0.00 35.24 4.11
3057 3401 9.396022 CTGTCATGTTTATTAACTCATAACCCT 57.604 33.333 0.00 0.00 35.24 4.34
3058 3402 9.747898 TGTCATGTTTATTAACTCATAACCCTT 57.252 29.630 0.00 0.00 35.24 3.95
3071 3415 9.901172 AACTCATAACCCTTATAACTACCTTTG 57.099 33.333 0.00 0.00 0.00 2.77
3072 3416 9.054580 ACTCATAACCCTTATAACTACCTTTGT 57.945 33.333 0.00 0.00 0.00 2.83
3073 3417 9.543783 CTCATAACCCTTATAACTACCTTTGTC 57.456 37.037 0.00 0.00 0.00 3.18
3074 3418 9.049050 TCATAACCCTTATAACTACCTTTGTCA 57.951 33.333 0.00 0.00 0.00 3.58
3075 3419 9.326413 CATAACCCTTATAACTACCTTTGTCAG 57.674 37.037 0.00 0.00 0.00 3.51
3092 3436 1.693606 TCAGGTGCTCACAGTGAATCA 59.306 47.619 4.41 2.99 0.00 2.57
3134 3478 9.965902 TTCAGAGAAGCCTATTTCTATTTCTTT 57.034 29.630 0.00 0.00 37.53 2.52
3201 3545 4.141914 ACCTAGGTATTTGAAGGAGAAGCG 60.142 45.833 14.41 0.00 33.16 4.68
3301 3645 4.569719 TTCCTGATCCTTGAAAGGTACC 57.430 45.455 2.73 2.73 46.54 3.34
3319 3663 0.179100 CCACCAGGTATCTGCACTCG 60.179 60.000 0.00 0.00 39.61 4.18
3334 3678 0.172803 ACTCGACGATACCAGCAACC 59.827 55.000 0.00 0.00 0.00 3.77
3336 3680 1.153901 CGACGATACCAGCAACCGT 60.154 57.895 0.00 0.00 36.08 4.83
3363 3707 2.592102 AATGGCATTCTGGTGTGAGT 57.408 45.000 6.96 0.00 0.00 3.41
3468 3867 4.440880 CATTTCTGTTGAGCCTCTCCTAG 58.559 47.826 0.00 0.00 0.00 3.02
3470 3869 4.317530 TTCTGTTGAGCCTCTCCTAGTA 57.682 45.455 0.00 0.00 0.00 1.82
3482 3881 5.806406 GCCTCTCCTAGTACATCTATGCTCT 60.806 48.000 0.00 0.00 0.00 4.09
3497 3896 0.105039 GCTCTGATTCCCCACCTACG 59.895 60.000 0.00 0.00 0.00 3.51
3518 3917 3.117046 GTCCTCGCATTACTACTTGCTC 58.883 50.000 0.00 0.00 36.71 4.26
3529 3928 1.736681 CTACTTGCTCCTTCAAGCTGC 59.263 52.381 3.67 0.00 45.43 5.25
3543 3942 4.905429 TCAAGCTGCCAGAAATTGTAGTA 58.095 39.130 0.00 0.00 0.00 1.82
3563 3962 6.707599 AGTACTTTCTAATCAAGAACGTGC 57.292 37.500 7.03 5.95 44.11 5.34
3573 3972 1.529438 CAAGAACGTGCGTAACCACAT 59.471 47.619 0.00 0.00 35.47 3.21
3592 3991 2.842208 TCAACTTGCAAGGTCGTTTG 57.158 45.000 29.18 22.18 0.00 2.93
3599 4045 0.920664 GCAAGGTCGTTTGTTTGTGC 59.079 50.000 0.00 0.00 0.00 4.57
3612 4058 0.540923 TTTGTGCCTGCCAGCTTTTT 59.459 45.000 0.00 0.00 0.00 1.94
3635 4081 6.194796 TGTAATTTGCTCTTCTGTAATGCC 57.805 37.500 0.00 0.00 0.00 4.40
3677 4123 8.033626 AGGTTTACTTCGGTTACTTAGATTCAG 58.966 37.037 0.00 0.00 0.00 3.02
3719 4232 9.359653 GGTATACATTTCTACCAGTACCTCTTA 57.640 37.037 5.01 0.00 37.83 2.10
3739 4252 9.621629 CCTCTTACTCTAGACATCGGATTATAT 57.378 37.037 0.00 0.00 0.00 0.86
3764 4287 0.954452 GAACAGACCCAAGCACCAAG 59.046 55.000 0.00 0.00 0.00 3.61
3777 4300 3.177228 AGCACCAAGACATCTCTTAGGT 58.823 45.455 0.00 1.03 37.92 3.08
3782 4305 6.702329 CACCAAGACATCTCTTAGGTAGTTT 58.298 40.000 5.13 0.00 36.53 2.66
3784 4307 6.109359 CCAAGACATCTCTTAGGTAGTTTGG 58.891 44.000 0.00 0.00 34.74 3.28
3820 4343 8.375493 TGAGTTGATTGTATTTAGTACTCCCT 57.625 34.615 0.00 0.00 34.27 4.20
3821 4344 8.475639 TGAGTTGATTGTATTTAGTACTCCCTC 58.524 37.037 0.00 0.00 34.27 4.30
3822 4345 7.793036 AGTTGATTGTATTTAGTACTCCCTCC 58.207 38.462 0.00 0.00 34.27 4.30
3823 4346 6.401047 TGATTGTATTTAGTACTCCCTCCG 57.599 41.667 0.00 0.00 34.27 4.63
3824 4347 5.895534 TGATTGTATTTAGTACTCCCTCCGT 59.104 40.000 0.00 0.00 34.27 4.69
3825 4348 5.841957 TTGTATTTAGTACTCCCTCCGTC 57.158 43.478 0.00 0.00 34.27 4.79
3826 4349 4.210331 TGTATTTAGTACTCCCTCCGTCC 58.790 47.826 0.00 0.00 34.27 4.79
3827 4350 2.149973 TTTAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
3828 4351 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3829 4352 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
3830 4353 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3831 4354 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3832 4355 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3833 4356 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3834 4357 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3835 4358 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3836 4359 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3837 4360 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3838 4361 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3839 4362 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3840 4363 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3841 4364 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3842 4365 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3843 4366 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3844 4367 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
3845 4368 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
3846 4369 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
3847 4370 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
3848 4371 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
3849 4372 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
3850 4373 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
3851 4374 7.301054 CCAAAATAAGTGTCTCAAGCTTAGTG 58.699 38.462 0.00 0.00 0.00 2.74
3852 4375 6.487689 AAATAAGTGTCTCAAGCTTAGTGC 57.512 37.500 0.00 0.00 43.29 4.40
3853 4376 3.475566 AAGTGTCTCAAGCTTAGTGCA 57.524 42.857 0.00 0.00 45.94 4.57
3854 4377 3.475566 AGTGTCTCAAGCTTAGTGCAA 57.524 42.857 0.00 0.00 45.94 4.08
3855 4378 3.134458 AGTGTCTCAAGCTTAGTGCAAC 58.866 45.455 0.00 0.00 45.94 4.17
3868 4391 2.688364 GTGCAACTTTGTACTGGAGC 57.312 50.000 3.22 0.00 40.10 4.70
3869 4392 2.222027 GTGCAACTTTGTACTGGAGCT 58.778 47.619 3.22 0.00 40.10 4.09
3870 4393 3.399330 GTGCAACTTTGTACTGGAGCTA 58.601 45.455 3.22 0.00 40.10 3.32
3871 4394 3.433615 GTGCAACTTTGTACTGGAGCTAG 59.566 47.826 3.22 0.00 40.10 3.42
3872 4395 3.071023 TGCAACTTTGTACTGGAGCTAGT 59.929 43.478 0.00 0.00 34.71 2.57
3873 4396 4.282449 TGCAACTTTGTACTGGAGCTAGTA 59.718 41.667 0.00 0.00 32.19 1.82
3883 4406 5.140747 ACTGGAGCTAGTACAAAGTTGAG 57.859 43.478 0.00 0.00 0.00 3.02
3884 4407 4.833380 ACTGGAGCTAGTACAAAGTTGAGA 59.167 41.667 0.00 0.00 0.00 3.27
3885 4408 5.135508 TGGAGCTAGTACAAAGTTGAGAC 57.864 43.478 0.00 0.00 0.00 3.36
3886 4409 4.587262 TGGAGCTAGTACAAAGTTGAGACA 59.413 41.667 0.00 0.00 0.00 3.41
3887 4410 4.924462 GGAGCTAGTACAAAGTTGAGACAC 59.076 45.833 0.00 0.00 0.00 3.67
3888 4411 5.279056 GGAGCTAGTACAAAGTTGAGACACT 60.279 44.000 0.00 0.00 0.00 3.55
3889 4412 6.163135 AGCTAGTACAAAGTTGAGACACTT 57.837 37.500 0.00 0.00 38.74 3.16
3890 4413 7.286215 AGCTAGTACAAAGTTGAGACACTTA 57.714 36.000 0.00 0.00 35.87 2.24
3891 4414 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
3892 4415 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
3893 4416 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
3896 4419 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
3897 4420 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
3898 4421 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
3899 4422 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3900 4423 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
3901 4424 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3902 4425 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3903 4426 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3904 4427 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3905 4428 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3943 4473 8.856103 GTGTATGCCCCATACTTAAAATTACAT 58.144 33.333 14.35 0.00 44.76 2.29
3950 4480 9.665719 CCCCATACTTAAAATTACATTTTGCTT 57.334 29.630 4.96 0.00 42.08 3.91
4153 4683 4.023107 GGCTCGACATCTACTAGTAATGCA 60.023 45.833 17.67 0.00 0.00 3.96
4372 4902 4.119862 GTCTTACAGTTGCTGTCAAGACA 58.880 43.478 25.24 2.56 41.21 3.41
4519 5049 4.592942 TCTATTTGCAGGCAGAAGTTGAT 58.407 39.130 0.00 0.00 0.00 2.57
4704 5234 7.544804 AAAATTTTCATAGAGCCTTTGTCCT 57.455 32.000 0.00 0.00 0.00 3.85
4822 5352 8.188139 GGAAATTCGGAGCTTACATAAATTTCA 58.812 33.333 20.08 0.00 40.66 2.69
5025 5555 2.798847 CGCATCACATGACTCACATAGG 59.201 50.000 0.00 0.00 37.46 2.57
5344 5874 8.790718 AGATATGAAATGATGCTTGTTGGATAC 58.209 33.333 0.00 0.00 0.00 2.24
5362 5892 5.535783 TGGATACTGGTAAATGGCATGAATG 59.464 40.000 0.00 0.00 37.61 2.67
5396 5926 8.806146 ACAGTTTGAGCAATTTCTTGGTATTAT 58.194 29.630 0.00 0.00 42.91 1.28
5437 5967 1.883926 GTTGGCTTTGTCGGGTGTAAT 59.116 47.619 0.00 0.00 0.00 1.89
5598 6275 0.963962 AGGCAATGTTGGTGCTTGAG 59.036 50.000 0.00 0.00 41.88 3.02
5604 6281 0.179020 TGTTGGTGCTTGAGACTGGG 60.179 55.000 0.00 0.00 0.00 4.45
5874 6617 2.092838 GCAGCGTTTCTACAAGCTAGTG 59.907 50.000 0.00 0.00 37.94 2.74
5883 6626 1.153549 CAAGCTAGTGGACCCTCGC 60.154 63.158 0.00 0.00 0.00 5.03
5913 6656 3.005155 GCAATTTCTCTGTCAAAGGTGCT 59.995 43.478 0.00 0.00 30.45 4.40
5988 6731 1.009829 CGCTTATGAGCCAAGTGGTC 58.990 55.000 3.57 0.00 46.42 4.02
6090 6833 1.065102 GCACATTCGAGCAGCATGAAT 59.935 47.619 0.00 6.36 39.69 2.57
6220 6963 1.876416 GCTACTCACCAAAGCCGAACA 60.876 52.381 0.00 0.00 0.00 3.18
6260 7003 1.674817 CGTCGCTTGGTAATCCTGGTT 60.675 52.381 0.00 0.00 34.23 3.67
6491 7243 5.933617 TGGATGCTGCTATACATCTCTTTT 58.066 37.500 0.00 0.00 41.93 2.27
6492 7244 5.994054 TGGATGCTGCTATACATCTCTTTTC 59.006 40.000 0.00 0.00 41.93 2.29
6493 7245 6.183361 TGGATGCTGCTATACATCTCTTTTCT 60.183 38.462 0.00 0.00 41.93 2.52
6494 7246 6.368516 GGATGCTGCTATACATCTCTTTTCTC 59.631 42.308 0.00 0.00 41.93 2.87
6495 7247 6.477053 TGCTGCTATACATCTCTTTTCTCT 57.523 37.500 0.00 0.00 0.00 3.10
6496 7248 6.882656 TGCTGCTATACATCTCTTTTCTCTT 58.117 36.000 0.00 0.00 0.00 2.85
6497 7249 7.334090 TGCTGCTATACATCTCTTTTCTCTTT 58.666 34.615 0.00 0.00 0.00 2.52
6498 7250 7.826252 TGCTGCTATACATCTCTTTTCTCTTTT 59.174 33.333 0.00 0.00 0.00 2.27
6576 7328 1.609208 AACAGTCCATGTGCCACTTC 58.391 50.000 0.00 0.00 43.00 3.01
6589 7341 1.205893 GCCACTTCGAGAAGAGATGGT 59.794 52.381 18.54 0.00 40.79 3.55
6662 7414 1.506025 AGGAGAGGAGGCATCTTTCC 58.494 55.000 0.00 3.40 0.00 3.13
6671 7423 1.767681 AGGCATCTTTCCTCTAGCTGG 59.232 52.381 0.00 0.00 0.00 4.85
6733 7496 0.443869 CGCTTGCTTCTTGCGTACAT 59.556 50.000 0.00 0.00 46.63 2.29
6757 7520 9.062524 CATAGAGATAGGATAGGACCTTTATCG 57.937 40.741 0.00 0.00 41.00 2.92
6758 7521 5.889289 AGAGATAGGATAGGACCTTTATCGC 59.111 44.000 0.00 5.20 41.00 4.58
6792 7555 0.455633 CAAGCAAAGCATCGCCTCAC 60.456 55.000 0.00 0.00 0.00 3.51
6826 7589 4.158764 CGTCTACAAGAAGAGAGAATGGGT 59.841 45.833 0.00 0.00 0.00 4.51
6827 7590 5.357314 CGTCTACAAGAAGAGAGAATGGGTA 59.643 44.000 0.00 0.00 0.00 3.69
6828 7591 6.459024 CGTCTACAAGAAGAGAGAATGGGTAG 60.459 46.154 0.00 0.00 0.00 3.18
6849 7658 2.555199 CCATTTTAGACGCCTGAGGAG 58.445 52.381 0.65 0.00 0.00 3.69
6871 7680 3.619030 AGGTCCGGGGGTTAGGGT 61.619 66.667 0.00 0.00 0.00 4.34
6894 7703 0.687354 ACGGTGAAGCTGATGGAACT 59.313 50.000 0.00 0.00 0.00 3.01
6921 7730 2.029290 CCCTGATTACCCGGTTCTATCG 60.029 54.545 0.00 0.00 0.00 2.92
7023 11472 2.178876 CTGCCGTGGTGGTGGTATGA 62.179 60.000 0.00 0.00 41.21 2.15
7073 11527 1.000938 GCAAAGCCTTCCAGTTCTGTG 60.001 52.381 0.00 0.00 0.00 3.66
7074 11528 1.610522 CAAAGCCTTCCAGTTCTGTGG 59.389 52.381 0.00 0.00 39.19 4.17
7075 11529 0.538287 AAGCCTTCCAGTTCTGTGGC 60.538 55.000 15.41 15.41 37.53 5.01
7076 11530 1.073897 GCCTTCCAGTTCTGTGGCT 59.926 57.895 15.71 0.00 37.53 4.75
7077 11531 0.538287 GCCTTCCAGTTCTGTGGCTT 60.538 55.000 15.71 0.00 37.53 4.35
7078 11532 1.528129 CCTTCCAGTTCTGTGGCTTC 58.472 55.000 0.00 0.00 37.53 3.86
7079 11533 1.072965 CCTTCCAGTTCTGTGGCTTCT 59.927 52.381 0.00 0.00 37.53 2.85
7080 11534 2.149578 CTTCCAGTTCTGTGGCTTCTG 58.850 52.381 0.00 0.00 37.53 3.02
7081 11535 1.131638 TCCAGTTCTGTGGCTTCTGT 58.868 50.000 0.00 0.00 37.53 3.41
7135 11589 4.012895 CACACCGCACCGCAGTTC 62.013 66.667 0.00 0.00 0.00 3.01
7138 11592 4.329545 ACCGCACCGCAGTTCCAT 62.330 61.111 0.00 0.00 0.00 3.41
7139 11593 3.499737 CCGCACCGCAGTTCCATC 61.500 66.667 0.00 0.00 0.00 3.51
7140 11594 2.434884 CGCACCGCAGTTCCATCT 60.435 61.111 0.00 0.00 0.00 2.90
7141 11595 2.034879 CGCACCGCAGTTCCATCTT 61.035 57.895 0.00 0.00 0.00 2.40
7142 11596 1.577328 CGCACCGCAGTTCCATCTTT 61.577 55.000 0.00 0.00 0.00 2.52
7143 11597 0.109597 GCACCGCAGTTCCATCTTTG 60.110 55.000 0.00 0.00 0.00 2.77
7144 11598 0.523072 CACCGCAGTTCCATCTTTGG 59.477 55.000 0.00 0.00 45.15 3.28
7145 11599 0.609131 ACCGCAGTTCCATCTTTGGG 60.609 55.000 0.00 0.00 43.81 4.12
7146 11600 0.322456 CCGCAGTTCCATCTTTGGGA 60.322 55.000 0.00 0.00 43.81 4.37
7147 11601 1.683011 CCGCAGTTCCATCTTTGGGAT 60.683 52.381 0.00 0.00 43.81 3.85
7148 11602 1.672881 CGCAGTTCCATCTTTGGGATC 59.327 52.381 0.00 0.00 43.81 3.36
7149 11603 2.681976 CGCAGTTCCATCTTTGGGATCT 60.682 50.000 0.00 0.00 43.81 2.75
7150 11604 2.948315 GCAGTTCCATCTTTGGGATCTC 59.052 50.000 0.00 0.00 43.81 2.75
7151 11605 3.549794 CAGTTCCATCTTTGGGATCTCC 58.450 50.000 0.00 0.00 43.81 3.71
7167 11621 5.749462 GGATCTCCCCCTGTTATTATGATG 58.251 45.833 0.00 0.00 0.00 3.07
7168 11622 5.339530 GGATCTCCCCCTGTTATTATGATGG 60.340 48.000 0.00 0.00 0.00 3.51
7169 11623 3.330701 TCTCCCCCTGTTATTATGATGGC 59.669 47.826 0.00 0.00 0.00 4.40
7170 11624 2.039746 TCCCCCTGTTATTATGATGGCG 59.960 50.000 0.00 0.00 0.00 5.69
7171 11625 2.039746 CCCCCTGTTATTATGATGGCGA 59.960 50.000 0.00 0.00 0.00 5.54
7172 11626 3.338249 CCCCTGTTATTATGATGGCGAG 58.662 50.000 0.00 0.00 0.00 5.03
7173 11627 3.244561 CCCCTGTTATTATGATGGCGAGT 60.245 47.826 0.00 0.00 0.00 4.18
7174 11628 4.389374 CCCTGTTATTATGATGGCGAGTT 58.611 43.478 0.00 0.00 0.00 3.01
7175 11629 5.512404 CCCCTGTTATTATGATGGCGAGTTA 60.512 44.000 0.00 0.00 0.00 2.24
7176 11630 5.639506 CCCTGTTATTATGATGGCGAGTTAG 59.360 44.000 0.00 0.00 0.00 2.34
7177 11631 5.639506 CCTGTTATTATGATGGCGAGTTAGG 59.360 44.000 0.00 0.00 0.00 2.69
7178 11632 4.994852 TGTTATTATGATGGCGAGTTAGGC 59.005 41.667 0.00 0.00 37.19 3.93
7179 11633 5.221641 TGTTATTATGATGGCGAGTTAGGCT 60.222 40.000 0.00 0.00 37.59 4.58
7180 11634 3.838244 TTATGATGGCGAGTTAGGCTT 57.162 42.857 0.00 0.00 37.59 4.35
7181 11635 1.959042 ATGATGGCGAGTTAGGCTTG 58.041 50.000 0.00 0.00 37.59 4.01
7182 11636 0.901827 TGATGGCGAGTTAGGCTTGA 59.098 50.000 0.00 0.00 37.59 3.02
7183 11637 1.134699 TGATGGCGAGTTAGGCTTGAG 60.135 52.381 0.00 0.00 37.59 3.02
7184 11638 0.905357 ATGGCGAGTTAGGCTTGAGT 59.095 50.000 0.00 0.00 37.59 3.41
7185 11639 0.246635 TGGCGAGTTAGGCTTGAGTC 59.753 55.000 0.00 0.00 37.59 3.36
7186 11640 0.460459 GGCGAGTTAGGCTTGAGTCC 60.460 60.000 0.00 0.00 0.00 3.85
7187 11641 0.246635 GCGAGTTAGGCTTGAGTCCA 59.753 55.000 0.00 0.00 0.00 4.02
7188 11642 1.737363 GCGAGTTAGGCTTGAGTCCAG 60.737 57.143 0.00 0.00 0.00 3.86
7189 11643 1.737363 CGAGTTAGGCTTGAGTCCAGC 60.737 57.143 7.68 7.68 0.00 4.85
7190 11644 1.552792 GAGTTAGGCTTGAGTCCAGCT 59.447 52.381 15.24 5.09 0.00 4.24
7191 11645 1.277557 AGTTAGGCTTGAGTCCAGCTG 59.722 52.381 15.24 6.78 0.00 4.24
7192 11646 0.036010 TTAGGCTTGAGTCCAGCTGC 60.036 55.000 15.24 0.00 0.00 5.25
7193 11647 1.194121 TAGGCTTGAGTCCAGCTGCA 61.194 55.000 15.24 0.00 0.00 4.41
7194 11648 1.601759 GGCTTGAGTCCAGCTGCAA 60.602 57.895 15.24 6.25 0.00 4.08
7195 11649 0.964358 GGCTTGAGTCCAGCTGCAAT 60.964 55.000 15.24 0.00 0.00 3.56
7196 11650 0.450983 GCTTGAGTCCAGCTGCAATC 59.549 55.000 8.66 2.27 0.00 2.67
7197 11651 1.093159 CTTGAGTCCAGCTGCAATCC 58.907 55.000 8.66 0.00 0.00 3.01
7198 11652 0.401356 TTGAGTCCAGCTGCAATCCA 59.599 50.000 8.66 0.00 0.00 3.41
7199 11653 0.622136 TGAGTCCAGCTGCAATCCAT 59.378 50.000 8.66 0.00 0.00 3.41
7200 11654 1.307097 GAGTCCAGCTGCAATCCATC 58.693 55.000 8.66 0.00 0.00 3.51
7201 11655 0.106819 AGTCCAGCTGCAATCCATCC 60.107 55.000 8.66 0.00 0.00 3.51
7202 11656 1.153107 TCCAGCTGCAATCCATCCG 60.153 57.895 8.66 0.00 0.00 4.18
7203 11657 1.452651 CCAGCTGCAATCCATCCGT 60.453 57.895 8.66 0.00 0.00 4.69
7204 11658 1.033746 CCAGCTGCAATCCATCCGTT 61.034 55.000 8.66 0.00 0.00 4.44
7205 11659 1.667236 CAGCTGCAATCCATCCGTTA 58.333 50.000 0.00 0.00 0.00 3.18
7206 11660 2.016318 CAGCTGCAATCCATCCGTTAA 58.984 47.619 0.00 0.00 0.00 2.01
7207 11661 2.017049 AGCTGCAATCCATCCGTTAAC 58.983 47.619 1.02 0.00 0.00 2.01
7208 11662 1.065551 GCTGCAATCCATCCGTTAACC 59.934 52.381 0.00 0.00 0.00 2.85
7209 11663 1.330521 CTGCAATCCATCCGTTAACCG 59.669 52.381 0.00 0.00 0.00 4.44
7210 11664 1.339247 TGCAATCCATCCGTTAACCGT 60.339 47.619 0.00 0.00 33.66 4.83
7211 11665 1.329599 GCAATCCATCCGTTAACCGTC 59.670 52.381 0.00 0.00 33.66 4.79
7212 11666 1.937899 CAATCCATCCGTTAACCGTCC 59.062 52.381 0.00 0.00 33.66 4.79
7213 11667 0.103572 ATCCATCCGTTAACCGTCCG 59.896 55.000 0.00 0.00 33.66 4.79
7214 11668 1.519898 CCATCCGTTAACCGTCCGG 60.520 63.158 3.76 3.76 43.03 5.14
7215 11669 2.169146 CATCCGTTAACCGTCCGGC 61.169 63.158 5.47 0.00 41.46 6.13
7216 11670 3.375472 ATCCGTTAACCGTCCGGCC 62.375 63.158 5.47 0.00 41.46 6.13
7217 11671 4.073200 CCGTTAACCGTCCGGCCT 62.073 66.667 5.47 0.00 39.32 5.19
7218 11672 2.507769 CGTTAACCGTCCGGCCTC 60.508 66.667 5.47 0.00 39.32 4.70
7219 11673 2.976356 GTTAACCGTCCGGCCTCT 59.024 61.111 5.47 0.00 39.32 3.69
7220 11674 1.153686 GTTAACCGTCCGGCCTCTC 60.154 63.158 5.47 0.00 39.32 3.20
7221 11675 1.607178 TTAACCGTCCGGCCTCTCA 60.607 57.895 5.47 0.00 39.32 3.27
7222 11676 1.186917 TTAACCGTCCGGCCTCTCAA 61.187 55.000 5.47 0.00 39.32 3.02
7223 11677 1.186917 TAACCGTCCGGCCTCTCAAA 61.187 55.000 5.47 0.00 39.32 2.69
7224 11678 2.047213 AACCGTCCGGCCTCTCAAAA 62.047 55.000 5.47 0.00 39.32 2.44
7225 11679 2.033194 CCGTCCGGCCTCTCAAAAC 61.033 63.158 0.00 0.00 0.00 2.43
7226 11680 2.033194 CGTCCGGCCTCTCAAAACC 61.033 63.158 0.00 0.00 0.00 3.27
7227 11681 1.072505 GTCCGGCCTCTCAAAACCA 59.927 57.895 0.00 0.00 0.00 3.67
7228 11682 0.322546 GTCCGGCCTCTCAAAACCAT 60.323 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.557317 CACCGAACAACCACTACTGTT 58.443 47.619 0.00 0.00 38.46 3.16
1 2 1.202604 CCACCGAACAACCACTACTGT 60.203 52.381 0.00 0.00 0.00 3.55
2 3 1.202604 ACCACCGAACAACCACTACTG 60.203 52.381 0.00 0.00 0.00 2.74
3 4 1.069668 GACCACCGAACAACCACTACT 59.930 52.381 0.00 0.00 0.00 2.57
4 5 1.069668 AGACCACCGAACAACCACTAC 59.930 52.381 0.00 0.00 0.00 2.73
5 6 1.416243 AGACCACCGAACAACCACTA 58.584 50.000 0.00 0.00 0.00 2.74
56 57 4.546829 AATCAGCAATGCAAATGACCTT 57.453 36.364 8.35 0.00 0.00 3.50
106 109 4.989168 CAGTAGGCACGTACTTCTTTTTCT 59.011 41.667 0.42 0.00 30.40 2.52
107 110 4.748600 ACAGTAGGCACGTACTTCTTTTTC 59.251 41.667 0.42 0.00 30.40 2.29
567 610 0.478507 GAGGGAGGGAGAGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
571 614 2.015726 GGGGAGGGAGGGAGAGAGA 61.016 68.421 0.00 0.00 0.00 3.10
579 622 2.522193 GCTAGTCGGGGAGGGAGG 60.522 72.222 0.00 0.00 0.00 4.30
800 1104 4.697756 CGAAACCCAGCGCCTCCA 62.698 66.667 2.29 0.00 0.00 3.86
866 1171 3.160047 ATCGGCCTCAGGGAGCAG 61.160 66.667 0.00 0.00 33.58 4.24
970 1284 2.334279 ACCTCCTCCTCCTACCCCC 61.334 68.421 0.00 0.00 0.00 5.40
971 1285 1.075151 CACCTCCTCCTCCTACCCC 60.075 68.421 0.00 0.00 0.00 4.95
972 1286 1.075151 CCACCTCCTCCTCCTACCC 60.075 68.421 0.00 0.00 0.00 3.69
973 1287 0.688087 CACCACCTCCTCCTCCTACC 60.688 65.000 0.00 0.00 0.00 3.18
974 1288 0.688087 CCACCACCTCCTCCTCCTAC 60.688 65.000 0.00 0.00 0.00 3.18
975 1289 1.153695 ACCACCACCTCCTCCTCCTA 61.154 60.000 0.00 0.00 0.00 2.94
979 1293 1.306226 GCTACCACCACCTCCTCCT 60.306 63.158 0.00 0.00 0.00 3.69
1026 1340 3.296709 CTCCCACCCGTCGAACTGG 62.297 68.421 0.00 0.00 0.00 4.00
1149 1478 2.187685 CGGATGCAGCAGCCAGTA 59.812 61.111 28.84 0.00 40.32 2.74
1155 1484 2.895865 CAGAGGCGGATGCAGCAG 60.896 66.667 3.51 0.00 45.35 4.24
1370 1701 0.546122 AACACTGTGGAAGAGGCACA 59.454 50.000 13.09 0.00 0.00 4.57
1371 1702 0.947244 CAACACTGTGGAAGAGGCAC 59.053 55.000 13.09 0.00 0.00 5.01
1372 1703 0.819259 GCAACACTGTGGAAGAGGCA 60.819 55.000 13.09 0.00 0.00 4.75
1373 1704 0.536006 AGCAACACTGTGGAAGAGGC 60.536 55.000 13.09 6.18 0.00 4.70
1389 1720 4.654915 TCTGAATCTGAACATCCAAAGCA 58.345 39.130 0.00 0.00 0.00 3.91
1559 1893 6.540189 ACACACATCCTCAGCATTATAAGAAC 59.460 38.462 0.00 0.00 0.00 3.01
1700 2034 5.527951 TGTTTTGTCGGCTTGTCATACTAAA 59.472 36.000 0.00 0.00 0.00 1.85
1778 2112 2.775911 ACAGCTCAGCTAGAAATGCA 57.224 45.000 0.00 0.00 36.40 3.96
1902 2236 9.146984 CATTAGAAATCTAACGAACTGTAACCA 57.853 33.333 5.07 0.00 40.81 3.67
1923 2257 4.134379 ACAGACACATCCTCAGCATTAG 57.866 45.455 0.00 0.00 0.00 1.73
2374 2712 4.864483 ATCAGAGTCAGGTAGGTGAGTA 57.136 45.455 0.00 0.00 29.81 2.59
2417 2755 9.783256 GAAAGCGGTTACTATTTTAAACATCAT 57.217 29.630 0.00 0.00 0.00 2.45
2491 2830 7.448748 TGATCTCTCATGCATTCCAAATATG 57.551 36.000 0.00 0.00 0.00 1.78
2498 2838 6.260493 GGCTATATTGATCTCTCATGCATTCC 59.740 42.308 0.00 0.00 0.00 3.01
2751 3092 3.215975 TGTTACTTACCCAAACCAGTGC 58.784 45.455 0.00 0.00 0.00 4.40
2754 3095 6.459670 AAAGTTGTTACTTACCCAAACCAG 57.540 37.500 0.00 0.00 43.74 4.00
2809 3151 7.545362 TTCTGAAATAATCTAGTCAGCAAGC 57.455 36.000 1.81 0.00 37.90 4.01
2853 3195 5.242434 TCATCCGGTACCATGTTAATATGC 58.758 41.667 13.54 0.00 0.00 3.14
2879 3221 1.021202 CTGGCTAGACTCAGTCCTCG 58.979 60.000 0.00 0.00 32.18 4.63
3048 3392 9.049050 TGACAAAGGTAGTTATAAGGGTTATGA 57.951 33.333 0.00 0.00 0.00 2.15
3049 3393 9.326413 CTGACAAAGGTAGTTATAAGGGTTATG 57.674 37.037 0.00 0.00 0.00 1.90
3050 3394 8.491958 CCTGACAAAGGTAGTTATAAGGGTTAT 58.508 37.037 0.00 0.00 41.74 1.89
3052 3396 6.718294 CCTGACAAAGGTAGTTATAAGGGTT 58.282 40.000 0.00 0.00 41.74 4.11
3053 3397 6.309389 CCTGACAAAGGTAGTTATAAGGGT 57.691 41.667 0.00 0.00 41.74 4.34
3067 3411 1.600957 CACTGTGAGCACCTGACAAAG 59.399 52.381 0.32 0.00 25.67 2.77
3068 3412 1.209261 TCACTGTGAGCACCTGACAAA 59.791 47.619 6.36 0.00 25.67 2.83
3069 3413 0.829990 TCACTGTGAGCACCTGACAA 59.170 50.000 6.36 0.00 25.67 3.18
3070 3414 0.829990 TTCACTGTGAGCACCTGACA 59.170 50.000 10.77 0.00 0.00 3.58
3071 3415 2.072298 GATTCACTGTGAGCACCTGAC 58.928 52.381 10.77 0.00 0.00 3.51
3072 3416 1.693606 TGATTCACTGTGAGCACCTGA 59.306 47.619 10.77 0.00 0.00 3.86
3073 3417 1.802960 GTGATTCACTGTGAGCACCTG 59.197 52.381 23.83 0.00 31.58 4.00
3074 3418 1.696336 AGTGATTCACTGTGAGCACCT 59.304 47.619 27.44 18.31 43.63 4.00
3075 3419 2.175878 AGTGATTCACTGTGAGCACC 57.824 50.000 27.44 17.06 43.63 5.01
3076 3420 3.397482 AGAAGTGATTCACTGTGAGCAC 58.603 45.455 25.51 25.51 44.62 4.40
3077 3421 3.555795 GGAGAAGTGATTCACTGTGAGCA 60.556 47.826 19.65 10.45 44.62 4.26
3078 3422 2.999355 GGAGAAGTGATTCACTGTGAGC 59.001 50.000 19.65 8.02 44.62 4.26
3079 3423 3.594134 GGGAGAAGTGATTCACTGTGAG 58.406 50.000 19.65 0.00 44.62 3.51
3080 3424 2.303022 GGGGAGAAGTGATTCACTGTGA 59.697 50.000 19.65 6.36 44.62 3.58
3081 3425 2.304180 AGGGGAGAAGTGATTCACTGTG 59.696 50.000 19.65 0.17 44.62 3.66
3082 3426 2.625639 AGGGGAGAAGTGATTCACTGT 58.374 47.619 19.65 10.48 44.62 3.55
3092 3436 2.112691 TCTGAAGGAGAAGGGGAGAAGT 59.887 50.000 0.00 0.00 0.00 3.01
3164 3508 3.830121 ACCTAGGTGAATAGTCTACCCG 58.170 50.000 15.42 1.96 35.03 5.28
3172 3516 8.251383 TCTCCTTCAAATACCTAGGTGAATAG 57.749 38.462 25.33 16.79 29.93 1.73
3179 3523 4.141914 ACGCTTCTCCTTCAAATACCTAGG 60.142 45.833 7.41 7.41 0.00 3.02
3201 3545 9.481340 AATTTCCAAAAGAAGAAGCAGAAATAC 57.519 29.630 0.00 0.00 35.40 1.89
3218 3562 8.782144 GCAACCATTTAATCAGAAATTTCCAAA 58.218 29.630 14.61 7.94 0.00 3.28
3301 3645 0.817654 TCGAGTGCAGATACCTGGTG 59.182 55.000 10.23 0.00 40.72 4.17
3319 3663 2.282701 TAACGGTTGCTGGTATCGTC 57.717 50.000 3.07 0.00 33.34 4.20
3334 3678 4.142403 ACCAGAATGCCATTTCACATAACG 60.142 41.667 0.00 0.00 31.97 3.18
3336 3680 4.771577 ACACCAGAATGCCATTTCACATAA 59.228 37.500 0.00 0.00 31.97 1.90
3394 3738 3.071167 AGTGTTGGACTTGGAGAGGTTAC 59.929 47.826 0.00 0.00 0.00 2.50
3397 3741 1.417890 CAGTGTTGGACTTGGAGAGGT 59.582 52.381 0.00 0.00 29.75 3.85
3468 3867 4.284490 TGGGGAATCAGAGCATAGATGTAC 59.716 45.833 0.00 0.00 0.00 2.90
3470 3869 3.072184 GTGGGGAATCAGAGCATAGATGT 59.928 47.826 0.00 0.00 0.00 3.06
3482 3881 0.042131 AGGACGTAGGTGGGGAATCA 59.958 55.000 0.00 0.00 0.00 2.57
3497 3896 3.117046 GAGCAAGTAGTAATGCGAGGAC 58.883 50.000 4.12 0.00 46.98 3.85
3518 3917 2.298163 ACAATTTCTGGCAGCTTGAAGG 59.702 45.455 22.50 8.40 0.00 3.46
3558 3957 0.863144 GTTGATGTGGTTACGCACGT 59.137 50.000 0.00 0.00 40.41 4.49
3563 3962 3.554524 CTTGCAAGTTGATGTGGTTACG 58.445 45.455 18.65 0.00 0.00 3.18
3573 3972 2.088423 ACAAACGACCTTGCAAGTTGA 58.912 42.857 25.12 0.00 0.00 3.18
3592 3991 0.179076 AAAAGCTGGCAGGCACAAAC 60.179 50.000 17.64 0.00 34.17 2.93
3599 4045 3.187022 GCAAATTACAAAAAGCTGGCAGG 59.813 43.478 17.64 0.16 0.00 4.85
3612 4058 5.163764 CGGCATTACAGAAGAGCAAATTACA 60.164 40.000 0.00 0.00 0.00 2.41
3677 4123 3.508845 ATACCCACAAGGCCACATATC 57.491 47.619 5.01 0.00 40.58 1.63
3680 4126 1.919654 TGTATACCCACAAGGCCACAT 59.080 47.619 5.01 0.00 40.58 3.21
3739 4252 2.622942 GTGCTTGGGTCTGTTCATCAAA 59.377 45.455 0.00 0.00 0.00 2.69
3764 4287 8.258708 ACAATACCAAACTACCTAAGAGATGTC 58.741 37.037 0.00 0.00 0.00 3.06
3801 4324 6.402456 ACGGAGGGAGTACTAAATACAATC 57.598 41.667 0.00 0.00 36.09 2.67
3811 4334 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
3812 4335 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3813 4336 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3814 4337 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3815 4338 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3816 4339 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3817 4340 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3818 4341 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3819 4342 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3820 4343 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3821 4344 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3822 4345 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
3823 4346 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
3824 4347 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
3825 4348 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
3826 4349 7.301054 CACTAAGCTTGAGACACTTATTTTGG 58.699 38.462 9.86 0.00 0.00 3.28
3827 4350 6.798959 GCACTAAGCTTGAGACACTTATTTTG 59.201 38.462 9.86 0.00 41.15 2.44
3828 4351 6.486657 TGCACTAAGCTTGAGACACTTATTTT 59.513 34.615 9.86 0.00 45.94 1.82
3829 4352 5.997746 TGCACTAAGCTTGAGACACTTATTT 59.002 36.000 9.86 0.00 45.94 1.40
3830 4353 5.551233 TGCACTAAGCTTGAGACACTTATT 58.449 37.500 9.86 0.00 45.94 1.40
3831 4354 5.152623 TGCACTAAGCTTGAGACACTTAT 57.847 39.130 9.86 0.00 45.94 1.73
3832 4355 4.600692 TGCACTAAGCTTGAGACACTTA 57.399 40.909 9.86 0.00 45.94 2.24
3833 4356 3.475566 TGCACTAAGCTTGAGACACTT 57.524 42.857 9.86 0.00 45.94 3.16
3834 4357 3.134458 GTTGCACTAAGCTTGAGACACT 58.866 45.455 9.86 0.00 45.94 3.55
3835 4358 3.134458 AGTTGCACTAAGCTTGAGACAC 58.866 45.455 9.86 0.00 45.94 3.67
3836 4359 3.475566 AGTTGCACTAAGCTTGAGACA 57.524 42.857 9.86 0.00 45.94 3.41
3837 4360 4.035675 ACAAAGTTGCACTAAGCTTGAGAC 59.964 41.667 9.86 0.00 45.94 3.36
3838 4361 4.199310 ACAAAGTTGCACTAAGCTTGAGA 58.801 39.130 9.86 0.00 45.94 3.27
3839 4362 4.558538 ACAAAGTTGCACTAAGCTTGAG 57.441 40.909 9.86 5.36 45.94 3.02
3840 4363 5.007626 CAGTACAAAGTTGCACTAAGCTTGA 59.992 40.000 9.86 0.00 45.94 3.02
3841 4364 5.207768 CAGTACAAAGTTGCACTAAGCTTG 58.792 41.667 9.86 1.57 45.94 4.01
3842 4365 4.275936 CCAGTACAAAGTTGCACTAAGCTT 59.724 41.667 3.48 3.48 45.94 3.74
3843 4366 3.815401 CCAGTACAAAGTTGCACTAAGCT 59.185 43.478 0.00 0.00 45.94 3.74
3844 4367 3.813166 TCCAGTACAAAGTTGCACTAAGC 59.187 43.478 0.00 0.00 45.96 3.09
3845 4368 4.083802 GCTCCAGTACAAAGTTGCACTAAG 60.084 45.833 0.00 0.65 33.18 2.18
3846 4369 3.813166 GCTCCAGTACAAAGTTGCACTAA 59.187 43.478 0.00 0.00 33.18 2.24
3847 4370 3.071023 AGCTCCAGTACAAAGTTGCACTA 59.929 43.478 0.00 0.00 33.18 2.74
3848 4371 2.158755 AGCTCCAGTACAAAGTTGCACT 60.159 45.455 0.00 0.00 35.22 4.40
3849 4372 2.222027 AGCTCCAGTACAAAGTTGCAC 58.778 47.619 0.00 0.00 0.00 4.57
3850 4373 2.638480 AGCTCCAGTACAAAGTTGCA 57.362 45.000 0.00 0.00 0.00 4.08
3851 4374 3.665190 ACTAGCTCCAGTACAAAGTTGC 58.335 45.455 0.00 0.00 0.00 4.17
3860 4383 6.008331 TCTCAACTTTGTACTAGCTCCAGTA 58.992 40.000 0.00 0.00 0.00 2.74
3861 4384 4.833380 TCTCAACTTTGTACTAGCTCCAGT 59.167 41.667 0.00 0.00 0.00 4.00
3862 4385 5.164954 GTCTCAACTTTGTACTAGCTCCAG 58.835 45.833 0.00 0.00 0.00 3.86
3863 4386 4.587262 TGTCTCAACTTTGTACTAGCTCCA 59.413 41.667 0.00 0.00 0.00 3.86
3864 4387 4.924462 GTGTCTCAACTTTGTACTAGCTCC 59.076 45.833 0.00 0.00 0.00 4.70
3865 4388 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
3866 4389 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
3867 4390 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
3870 4393 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3871 4394 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
3872 4395 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
3873 4396 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
3874 4397 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3875 4398 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3876 4399 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3877 4400 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3878 4401 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3879 4402 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3880 4403 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3881 4404 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3882 4405 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3883 4406 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3884 4407 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3885 4408 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3886 4409 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3887 4410 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3888 4411 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3889 4412 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3890 4413 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3891 4414 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
3892 4415 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
3893 4416 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3894 4417 0.686441 CACATACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
3895 4418 0.686769 ACACATACTCCCTCCGTCCC 60.687 60.000 0.00 0.00 0.00 4.46
3896 4419 1.192428 AACACATACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
3897 4420 2.028385 ACAAACACATACTCCCTCCGTC 60.028 50.000 0.00 0.00 0.00 4.79
3898 4421 1.975680 ACAAACACATACTCCCTCCGT 59.024 47.619 0.00 0.00 0.00 4.69
3899 4422 2.289444 ACACAAACACATACTCCCTCCG 60.289 50.000 0.00 0.00 0.00 4.63
3900 4423 3.418684 ACACAAACACATACTCCCTCC 57.581 47.619 0.00 0.00 0.00 4.30
3901 4424 4.332819 GCATACACAAACACATACTCCCTC 59.667 45.833 0.00 0.00 0.00 4.30
3902 4425 4.261801 GCATACACAAACACATACTCCCT 58.738 43.478 0.00 0.00 0.00 4.20
3903 4426 3.377172 GGCATACACAAACACATACTCCC 59.623 47.826 0.00 0.00 0.00 4.30
3904 4427 3.377172 GGGCATACACAAACACATACTCC 59.623 47.826 0.00 0.00 0.00 3.85
3905 4428 3.377172 GGGGCATACACAAACACATACTC 59.623 47.826 0.00 0.00 0.00 2.59
3956 4486 1.879575 CCAAGTCTGAGGTATCCCCA 58.120 55.000 0.00 0.00 34.66 4.96
4041 4571 9.554724 CACGCAATGAATAACAGTTTTAGTATT 57.445 29.630 0.00 0.00 0.00 1.89
4065 4595 2.287248 GCTGACTTTTCTGCTGTTCCAC 60.287 50.000 0.00 0.00 42.07 4.02
4153 4683 2.767394 AGATGCTGATGAACTGCTCTCT 59.233 45.455 0.00 0.00 42.58 3.10
4372 4902 5.191426 CCTTGAAGACCATCATGATTGAGT 58.809 41.667 13.42 7.98 34.73 3.41
4476 5006 8.691194 ATAGAATATGGAGGAGAATCATTGGA 57.309 34.615 0.00 0.00 36.25 3.53
4519 5049 3.955524 TGGTGAAGGTTACCAAGGAAA 57.044 42.857 3.51 0.00 44.79 3.13
4822 5352 7.079048 AGAGGAAGAGACCCTATGTATGAATT 58.921 38.462 0.00 0.00 33.36 2.17
4830 5360 2.091055 TGGGAGAGGAAGAGACCCTATG 60.091 54.545 0.00 0.00 40.98 2.23
5025 5555 2.346803 ACACGTATGAACAGGATGCAC 58.653 47.619 0.00 0.00 42.53 4.57
5362 5892 4.691860 ATTGCTCAAACTGTATGTCTGC 57.308 40.909 0.00 0.00 0.00 4.26
5398 5928 8.186709 AGCCAACACTACTAGTTAAACTTCTA 57.813 34.615 0.00 0.00 0.00 2.10
5437 5967 8.750515 TGAATGGATAGATGCACTCAAATTAA 57.249 30.769 0.00 0.00 31.64 1.40
5598 6275 0.610232 AACCAAGCAGCATCCCAGTC 60.610 55.000 0.00 0.00 0.00 3.51
5604 6281 5.229423 TGAACAATTTAACCAAGCAGCATC 58.771 37.500 0.00 0.00 0.00 3.91
5650 6340 6.533819 TTAGAACAAACATCGTGTAACTGG 57.466 37.500 0.00 0.00 31.75 4.00
5656 6363 7.724305 AGTAACATTAGAACAAACATCGTGT 57.276 32.000 0.00 0.00 0.00 4.49
5658 6365 7.817962 AGCTAGTAACATTAGAACAAACATCGT 59.182 33.333 0.00 0.00 0.00 3.73
5701 6408 6.897706 TGATGTCAAATGACCTGAAATTCA 57.102 33.333 10.83 0.00 44.15 2.57
5853 6596 2.092838 CACTAGCTTGTAGAAACGCTGC 59.907 50.000 0.00 0.00 34.14 5.25
5883 6626 1.005215 ACAGAGAAATTGCCCTCCAGG 59.995 52.381 0.00 0.00 39.47 4.45
5913 6656 1.250328 CCAATTGTGCTGCCTTCTGA 58.750 50.000 4.43 0.00 0.00 3.27
5973 6716 1.405526 GCTTCGACCACTTGGCTCATA 60.406 52.381 0.00 0.00 39.32 2.15
6260 7003 4.228438 TGATCTGGAGAGACTCTAGGTTCA 59.772 45.833 4.57 6.70 39.16 3.18
6492 7244 9.339492 GCAACTTCAGATCATTCTTTAAAAGAG 57.661 33.333 0.00 0.00 39.03 2.85
6493 7245 9.071276 AGCAACTTCAGATCATTCTTTAAAAGA 57.929 29.630 0.00 0.00 35.26 2.52
6494 7246 9.339492 GAGCAACTTCAGATCATTCTTTAAAAG 57.661 33.333 0.00 0.00 0.00 2.27
6495 7247 9.071276 AGAGCAACTTCAGATCATTCTTTAAAA 57.929 29.630 0.00 0.00 0.00 1.52
6496 7248 8.627208 AGAGCAACTTCAGATCATTCTTTAAA 57.373 30.769 0.00 0.00 0.00 1.52
6497 7249 8.627208 AAGAGCAACTTCAGATCATTCTTTAA 57.373 30.769 0.00 0.00 32.91 1.52
6576 7328 2.477021 CGTGACTCACCATCTCTTCTCG 60.477 54.545 3.50 0.00 0.00 4.04
6589 7341 1.375908 GATTGGCTGCCGTGACTCA 60.376 57.895 14.98 0.00 0.00 3.41
6662 7414 0.179105 CTGCAGCACTCCAGCTAGAG 60.179 60.000 7.69 7.69 44.54 2.43
6664 7416 0.459934 GACTGCAGCACTCCAGCTAG 60.460 60.000 15.27 0.00 44.54 3.42
6671 7423 3.117171 CCGCAGACTGCAGCACTC 61.117 66.667 26.32 3.87 45.36 3.51
6688 7449 0.462581 TGGAATCGAGCTCATGTGCC 60.463 55.000 15.40 7.28 0.00 5.01
6733 7496 7.055378 GCGATAAAGGTCCTATCCTATCTCTA 58.945 42.308 0.00 0.00 36.74 2.43
6792 7555 2.069273 CTTGTAGACGTTGCCTCCTTG 58.931 52.381 0.00 0.00 0.00 3.61
6828 7591 1.017387 CCTCAGGCGTCTAAAATGGC 58.983 55.000 0.00 0.00 39.72 4.40
6853 7662 3.087906 CCCTAACCCCCGGACCTG 61.088 72.222 0.73 0.00 0.00 4.00
6871 7680 0.321564 CCATCAGCTTCACCGTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
6894 7703 1.209621 CCGGGTAATCAGGGAGGAAA 58.790 55.000 0.00 0.00 0.00 3.13
6909 7718 2.380081 GTGCAACGATAGAACCGGG 58.620 57.895 6.32 0.00 41.38 5.73
6921 7730 4.166011 GCGATGGAGCCGTGCAAC 62.166 66.667 0.00 0.00 0.00 4.17
6994 11429 1.375396 CCACGGCAGTTCATCGGAA 60.375 57.895 0.00 0.00 0.00 4.30
7023 11472 1.599797 CGCAACCGGGTCTTCCTTT 60.600 57.895 6.32 0.00 0.00 3.11
7079 11533 2.051518 GCGCAATTCCATGGGGACA 61.052 57.895 13.02 0.00 44.89 4.02
7080 11534 2.807622 GCGCAATTCCATGGGGAC 59.192 61.111 13.02 0.00 44.89 4.46
7081 11535 2.828095 CGCGCAATTCCATGGGGA 60.828 61.111 13.02 0.95 43.03 4.81
7144 11598 5.339530 CCATCATAATAACAGGGGGAGATCC 60.340 48.000 0.00 0.00 0.00 3.36
7145 11599 5.749462 CCATCATAATAACAGGGGGAGATC 58.251 45.833 0.00 0.00 0.00 2.75
7146 11600 4.018050 GCCATCATAATAACAGGGGGAGAT 60.018 45.833 0.00 0.00 0.00 2.75
7147 11601 3.330701 GCCATCATAATAACAGGGGGAGA 59.669 47.826 0.00 0.00 0.00 3.71
7148 11602 3.690460 GCCATCATAATAACAGGGGGAG 58.310 50.000 0.00 0.00 0.00 4.30
7149 11603 2.039746 CGCCATCATAATAACAGGGGGA 59.960 50.000 0.00 0.00 0.00 4.81
7150 11604 2.039746 TCGCCATCATAATAACAGGGGG 59.960 50.000 0.00 0.00 0.00 5.40
7151 11605 3.244561 ACTCGCCATCATAATAACAGGGG 60.245 47.826 0.00 0.00 0.00 4.79
7152 11606 4.008074 ACTCGCCATCATAATAACAGGG 57.992 45.455 0.00 0.00 0.00 4.45
7153 11607 5.639506 CCTAACTCGCCATCATAATAACAGG 59.360 44.000 0.00 0.00 0.00 4.00
7154 11608 5.120830 GCCTAACTCGCCATCATAATAACAG 59.879 44.000 0.00 0.00 0.00 3.16
7155 11609 4.994852 GCCTAACTCGCCATCATAATAACA 59.005 41.667 0.00 0.00 0.00 2.41
7156 11610 5.238583 AGCCTAACTCGCCATCATAATAAC 58.761 41.667 0.00 0.00 0.00 1.89
7157 11611 5.483685 AGCCTAACTCGCCATCATAATAA 57.516 39.130 0.00 0.00 0.00 1.40
7158 11612 5.011635 TCAAGCCTAACTCGCCATCATAATA 59.988 40.000 0.00 0.00 0.00 0.98
7159 11613 4.067896 CAAGCCTAACTCGCCATCATAAT 58.932 43.478 0.00 0.00 0.00 1.28
7160 11614 3.133901 TCAAGCCTAACTCGCCATCATAA 59.866 43.478 0.00 0.00 0.00 1.90
7161 11615 2.698274 TCAAGCCTAACTCGCCATCATA 59.302 45.455 0.00 0.00 0.00 2.15
7162 11616 1.486310 TCAAGCCTAACTCGCCATCAT 59.514 47.619 0.00 0.00 0.00 2.45
7163 11617 0.901827 TCAAGCCTAACTCGCCATCA 59.098 50.000 0.00 0.00 0.00 3.07
7164 11618 1.134670 ACTCAAGCCTAACTCGCCATC 60.135 52.381 0.00 0.00 0.00 3.51
7165 11619 0.905357 ACTCAAGCCTAACTCGCCAT 59.095 50.000 0.00 0.00 0.00 4.40
7166 11620 0.246635 GACTCAAGCCTAACTCGCCA 59.753 55.000 0.00 0.00 0.00 5.69
7167 11621 0.460459 GGACTCAAGCCTAACTCGCC 60.460 60.000 0.00 0.00 0.00 5.54
7168 11622 0.246635 TGGACTCAAGCCTAACTCGC 59.753 55.000 0.00 0.00 0.00 5.03
7169 11623 1.737363 GCTGGACTCAAGCCTAACTCG 60.737 57.143 0.00 0.00 0.00 4.18
7170 11624 1.552792 AGCTGGACTCAAGCCTAACTC 59.447 52.381 1.37 0.00 0.00 3.01
7171 11625 1.277557 CAGCTGGACTCAAGCCTAACT 59.722 52.381 5.57 0.00 0.00 2.24
7172 11626 1.731720 CAGCTGGACTCAAGCCTAAC 58.268 55.000 5.57 0.00 0.00 2.34
7173 11627 0.036010 GCAGCTGGACTCAAGCCTAA 60.036 55.000 17.12 0.00 0.00 2.69
7174 11628 1.194121 TGCAGCTGGACTCAAGCCTA 61.194 55.000 17.12 0.00 0.00 3.93
7175 11629 2.060567 TTGCAGCTGGACTCAAGCCT 62.061 55.000 17.12 0.00 0.00 4.58
7176 11630 0.964358 ATTGCAGCTGGACTCAAGCC 60.964 55.000 17.12 0.00 0.00 4.35
7177 11631 0.450983 GATTGCAGCTGGACTCAAGC 59.549 55.000 18.72 11.63 0.00 4.01
7178 11632 1.093159 GGATTGCAGCTGGACTCAAG 58.907 55.000 23.56 0.00 0.00 3.02
7179 11633 0.401356 TGGATTGCAGCTGGACTCAA 59.599 50.000 23.56 12.68 0.00 3.02
7180 11634 0.622136 ATGGATTGCAGCTGGACTCA 59.378 50.000 23.56 15.18 0.00 3.41
7181 11635 1.307097 GATGGATTGCAGCTGGACTC 58.693 55.000 17.12 16.46 0.00 3.36
7182 11636 0.106819 GGATGGATTGCAGCTGGACT 60.107 55.000 17.12 6.86 0.00 3.85
7183 11637 1.442526 CGGATGGATTGCAGCTGGAC 61.443 60.000 17.12 0.92 0.00 4.02
7184 11638 1.153107 CGGATGGATTGCAGCTGGA 60.153 57.895 17.12 10.66 0.00 3.86
7185 11639 1.033746 AACGGATGGATTGCAGCTGG 61.034 55.000 17.12 0.00 0.00 4.85
7186 11640 1.667236 TAACGGATGGATTGCAGCTG 58.333 50.000 10.11 10.11 0.00 4.24
7187 11641 2.017049 GTTAACGGATGGATTGCAGCT 58.983 47.619 0.00 0.00 0.00 4.24
7188 11642 1.065551 GGTTAACGGATGGATTGCAGC 59.934 52.381 0.00 0.00 0.00 5.25
7189 11643 1.330521 CGGTTAACGGATGGATTGCAG 59.669 52.381 7.35 0.00 39.42 4.41
7190 11644 1.374560 CGGTTAACGGATGGATTGCA 58.625 50.000 7.35 0.00 39.42 4.08
7202 11656 1.153686 GAGAGGCCGGACGGTTAAC 60.154 63.158 5.05 0.00 37.65 2.01
7203 11657 1.186917 TTGAGAGGCCGGACGGTTAA 61.187 55.000 5.05 0.00 37.65 2.01
7204 11658 1.186917 TTTGAGAGGCCGGACGGTTA 61.187 55.000 5.05 0.00 37.65 2.85
7205 11659 2.047213 TTTTGAGAGGCCGGACGGTT 62.047 55.000 5.05 0.00 37.65 4.44
7206 11660 2.513259 TTTTGAGAGGCCGGACGGT 61.513 57.895 5.05 0.00 37.65 4.83
7207 11661 2.033194 GTTTTGAGAGGCCGGACGG 61.033 63.158 5.05 6.35 38.57 4.79
7208 11662 2.033194 GGTTTTGAGAGGCCGGACG 61.033 63.158 5.05 0.00 0.00 4.79
7209 11663 0.322546 ATGGTTTTGAGAGGCCGGAC 60.323 55.000 5.05 0.00 0.00 4.79
7210 11664 2.074967 ATGGTTTTGAGAGGCCGGA 58.925 52.632 5.05 0.00 0.00 5.14
7211 11665 4.743018 ATGGTTTTGAGAGGCCGG 57.257 55.556 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.