Multiple sequence alignment - TraesCS5D01G195300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G195300 chr5D 100.000 2133 0 0 687 2819 298933513 298935645 0.000000e+00 3940.0
1 TraesCS5D01G195300 chr5D 100.000 120 0 0 1 120 298932827 298932946 3.660000e-54 222.0
2 TraesCS5D01G195300 chr5A 93.819 1440 60 13 699 2120 398922833 398921405 0.000000e+00 2139.0
3 TraesCS5D01G195300 chr5A 88.994 527 30 5 2264 2789 398890465 398889966 6.630000e-176 627.0
4 TraesCS5D01G195300 chr5A 90.244 123 7 5 2129 2249 398890566 398890447 3.760000e-34 156.0
5 TraesCS5D01G195300 chr5B 92.063 1449 80 23 687 2116 339539200 339540632 0.000000e+00 2006.0
6 TraesCS5D01G195300 chr7B 83.146 89 13 2 1 87 422909778 422909690 2.330000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G195300 chr5D 298932827 298935645 2818 False 2081.0 3940 100.000 1 2819 2 chr5D.!!$F1 2818
1 TraesCS5D01G195300 chr5A 398921405 398922833 1428 True 2139.0 2139 93.819 699 2120 1 chr5A.!!$R1 1421
2 TraesCS5D01G195300 chr5A 398889966 398890566 600 True 391.5 627 89.619 2129 2789 2 chr5A.!!$R2 660
3 TraesCS5D01G195300 chr5B 339539200 339540632 1432 False 2006.0 2006 92.063 687 2116 1 chr5B.!!$F1 1429

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.890683 CATTTCTGGCTTTCGGGCTT 59.109 50.0 0.0 0.0 41.48 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 1878 0.45339 GCTGCTGTGCCTACCAAATC 59.547 55.0 0.0 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.948964 ATTGATCATATTCGAGGTATTGAATCA 57.051 29.630 0.00 0.00 39.72 2.57
52 53 9.777297 TTGATCATATTCGAGGTATTGAATCAA 57.223 29.630 0.00 0.00 39.72 2.57
53 54 9.948964 TGATCATATTCGAGGTATTGAATCAAT 57.051 29.630 13.43 13.43 39.72 2.57
111 112 1.512694 CCATTTCTGGCTTTCGGGC 59.487 57.895 0.00 0.00 35.23 6.13
112 113 0.967380 CCATTTCTGGCTTTCGGGCT 60.967 55.000 0.00 0.00 41.48 5.19
113 114 0.890683 CATTTCTGGCTTTCGGGCTT 59.109 50.000 0.00 0.00 41.48 4.35
114 115 0.890683 ATTTCTGGCTTTCGGGCTTG 59.109 50.000 0.00 0.00 41.48 4.01
115 116 1.178534 TTTCTGGCTTTCGGGCTTGG 61.179 55.000 0.00 0.00 41.48 3.61
116 117 3.064324 CTGGCTTTCGGGCTTGGG 61.064 66.667 0.00 0.00 41.48 4.12
733 737 7.417911 CCACTCACACCATGTTATATGTACTCT 60.418 40.741 0.00 0.00 0.00 3.24
736 740 7.489160 TCACACCATGTTATATGTACTCTGAC 58.511 38.462 0.00 0.00 0.00 3.51
743 747 1.842052 TATGTACTCTGACCGCACCA 58.158 50.000 0.00 0.00 0.00 4.17
795 805 7.440523 TCTGCTAAAAATCTCTGGAAGAAAC 57.559 36.000 0.00 0.00 46.34 2.78
803 813 9.591792 AAAAATCTCTGGAAGAAACAAAGAAAG 57.408 29.630 0.00 0.00 46.34 2.62
804 814 5.757850 TCTCTGGAAGAAACAAAGAAAGC 57.242 39.130 0.00 0.00 46.34 3.51
805 815 5.440610 TCTCTGGAAGAAACAAAGAAAGCT 58.559 37.500 0.00 0.00 46.34 3.74
807 817 7.227156 TCTCTGGAAGAAACAAAGAAAGCTAT 58.773 34.615 0.00 0.00 46.34 2.97
1037 1049 4.288105 AGATGAGGCCAAGAAGAAGAAGAA 59.712 41.667 5.01 0.00 0.00 2.52
1066 1078 4.687215 AGCGCGCAAGGCTCAAGA 62.687 61.111 35.10 0.00 39.18 3.02
1067 1079 3.726517 GCGCGCAAGGCTCAAGAA 61.727 61.111 29.10 0.00 40.44 2.52
1329 1350 4.143333 CCGACCGCCGTTCCTGAT 62.143 66.667 0.00 0.00 36.31 2.90
1407 1428 3.620785 GAGAGCGATGGGGGCGAT 61.621 66.667 0.00 0.00 35.00 4.58
1446 1467 1.192146 CCAAGAAGGTGGTCTCCGGA 61.192 60.000 2.93 2.93 33.63 5.14
1857 1878 1.198408 CTGGCAAGCATGTGTGTGTAG 59.802 52.381 0.00 0.00 0.00 2.74
2047 2076 3.407424 TTTCACTCCATGTGGACTGAG 57.593 47.619 10.08 0.00 46.20 3.35
2057 2086 1.412710 TGTGGACTGAGGTGTCAAGTC 59.587 52.381 0.00 0.00 38.61 3.01
2058 2087 1.412710 GTGGACTGAGGTGTCAAGTCA 59.587 52.381 5.08 0.00 38.61 3.41
2060 2089 2.503765 TGGACTGAGGTGTCAAGTCAAA 59.496 45.455 5.08 0.00 38.61 2.69
2104 2134 5.904362 AAGGATCTGTATTTGCTTTGGAC 57.096 39.130 0.00 0.00 0.00 4.02
2157 2187 2.582172 TGTTTGTGATCATCCCATCCCT 59.418 45.455 0.00 0.00 0.00 4.20
2162 2192 0.322975 GATCATCCCATCCCTCGTGG 59.677 60.000 0.00 0.00 36.47 4.94
2177 2207 0.179124 CGTGGTGCTTCTCTAGGAGC 60.179 60.000 3.11 3.11 42.40 4.70
2183 2213 1.272704 TGCTTCTCTAGGAGCACAGGA 60.273 52.381 8.94 0.00 31.84 3.86
2184 2214 1.827969 GCTTCTCTAGGAGCACAGGAA 59.172 52.381 5.34 0.00 0.00 3.36
2188 2218 4.744795 TCTCTAGGAGCACAGGAAATTC 57.255 45.455 0.00 0.00 0.00 2.17
2200 2230 5.920840 GCACAGGAAATTCTTTTAGACCAAC 59.079 40.000 0.00 0.00 0.00 3.77
2221 2252 3.119849 ACGGCACAAAAGATCACTAATGC 60.120 43.478 0.00 0.00 0.00 3.56
2223 2254 3.429085 GCACAAAAGATCACTAATGCCG 58.571 45.455 0.00 0.00 0.00 5.69
2226 2257 1.680338 AAAGATCACTAATGCCGGGC 58.320 50.000 13.32 13.32 0.00 6.13
2227 2258 0.839946 AAGATCACTAATGCCGGGCT 59.160 50.000 21.46 2.87 0.00 5.19
2229 2260 0.947244 GATCACTAATGCCGGGCTTG 59.053 55.000 21.46 9.75 0.00 4.01
2230 2261 0.466189 ATCACTAATGCCGGGCTTGG 60.466 55.000 21.46 15.26 0.00 3.61
2231 2262 1.077787 CACTAATGCCGGGCTTGGA 60.078 57.895 21.46 0.00 0.00 3.53
2232 2263 0.679640 CACTAATGCCGGGCTTGGAA 60.680 55.000 21.46 0.00 0.00 3.53
2233 2264 0.039035 ACTAATGCCGGGCTTGGAAA 59.961 50.000 21.46 0.00 0.00 3.13
2234 2265 0.455815 CTAATGCCGGGCTTGGAAAC 59.544 55.000 21.46 0.00 0.00 2.78
2235 2266 0.251386 TAATGCCGGGCTTGGAAACA 60.251 50.000 21.46 0.00 39.83 2.83
2273 2304 2.570415 TGCGGGTGAGGAAACAATAA 57.430 45.000 0.00 0.00 0.00 1.40
2300 2331 5.216566 TCTTGAATATACGCTGCACAAAC 57.783 39.130 0.00 0.00 0.00 2.93
2325 2356 9.334947 ACTTAAATTCATAGTCAGATCCACATG 57.665 33.333 0.00 0.00 0.00 3.21
2341 2372 9.736414 AGATCCACATGATAAGAAATATGAAGG 57.264 33.333 0.00 0.00 32.41 3.46
2360 2391 6.923012 TGAAGGACCATAAACATTCACAATG 58.077 36.000 0.00 0.00 44.48 2.82
2364 2395 6.835488 AGGACCATAAACATTCACAATGCTAT 59.165 34.615 0.00 0.00 42.69 2.97
2382 2413 3.068732 GCTATGAGGATGATGGCGCTATA 59.931 47.826 6.12 0.00 0.00 1.31
2410 2441 6.149308 CGGCAATAATAGGATGTCAAAGCATA 59.851 38.462 0.00 0.00 0.00 3.14
2418 2449 5.086621 AGGATGTCAAAGCATAGGGTTTTT 58.913 37.500 1.14 0.00 42.47 1.94
2419 2450 5.047092 AGGATGTCAAAGCATAGGGTTTTTG 60.047 40.000 1.14 0.00 42.47 2.44
2425 2457 7.772757 TGTCAAAGCATAGGGTTTTTGAAAAAT 59.227 29.630 6.35 0.00 42.47 1.82
2454 2486 9.460019 TTTCAAAGAAACTTCCATTGGAATTTT 57.540 25.926 25.39 25.39 43.76 1.82
2462 2494 7.454260 ACTTCCATTGGAATTTTCAGTCTAC 57.546 36.000 18.28 0.00 41.23 2.59
2504 2536 5.187772 TGTTCTGTATAGATGAAGCCACACT 59.812 40.000 0.00 0.00 31.81 3.55
2564 2596 4.620803 CGTGTTCTTGACCTATGCTAACCT 60.621 45.833 0.00 0.00 0.00 3.50
2583 2615 2.032550 CCTGAGTCAAGTTGTTGTGCAG 59.967 50.000 2.11 5.18 34.98 4.41
2592 2624 5.176774 TCAAGTTGTTGTGCAGTTATAGACG 59.823 40.000 2.11 0.00 34.98 4.18
2593 2625 3.432252 AGTTGTTGTGCAGTTATAGACGC 59.568 43.478 0.00 0.00 0.00 5.19
2604 2636 5.633601 GCAGTTATAGACGCACTATGCATAA 59.366 40.000 8.00 0.00 45.36 1.90
2812 2844 6.422344 TTTTTATTAACCAGGTTGAACCCC 57.578 37.500 15.82 0.00 39.75 4.95
2813 2845 5.342361 TTTATTAACCAGGTTGAACCCCT 57.658 39.130 15.82 0.00 39.75 4.79
2814 2846 3.915346 ATTAACCAGGTTGAACCCCTT 57.085 42.857 15.82 2.49 39.75 3.95
2815 2847 3.691698 TTAACCAGGTTGAACCCCTTT 57.308 42.857 15.82 4.04 39.75 3.11
2816 2848 2.082140 AACCAGGTTGAACCCCTTTC 57.918 50.000 11.41 0.00 39.75 2.62
2817 2849 0.187606 ACCAGGTTGAACCCCTTTCC 59.812 55.000 11.41 0.00 39.75 3.13
2818 2850 0.187361 CCAGGTTGAACCCCTTTCCA 59.813 55.000 11.41 0.00 39.75 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.948964 TGATTCAATACCTCGAATATGATCAAT 57.051 29.630 0.00 0.00 32.05 2.57
26 27 9.777297 TTGATTCAATACCTCGAATATGATCAA 57.223 29.630 0.00 12.85 32.05 2.57
27 28 9.948964 ATTGATTCAATACCTCGAATATGATCA 57.051 29.630 10.16 0.00 31.77 2.92
76 77 8.840321 CCAGAAATGGTCACGAATAGATATTTT 58.160 33.333 0.00 0.00 0.00 1.82
77 78 7.041098 GCCAGAAATGGTCACGAATAGATATTT 60.041 37.037 0.00 0.00 0.00 1.40
78 79 6.428159 GCCAGAAATGGTCACGAATAGATATT 59.572 38.462 0.00 0.00 0.00 1.28
79 80 5.934625 GCCAGAAATGGTCACGAATAGATAT 59.065 40.000 0.00 0.00 0.00 1.63
80 81 5.070446 AGCCAGAAATGGTCACGAATAGATA 59.930 40.000 0.00 0.00 0.00 1.98
81 82 4.130118 GCCAGAAATGGTCACGAATAGAT 58.870 43.478 0.00 0.00 0.00 1.98
82 83 3.197766 AGCCAGAAATGGTCACGAATAGA 59.802 43.478 0.00 0.00 0.00 1.98
83 84 3.535561 AGCCAGAAATGGTCACGAATAG 58.464 45.455 0.00 0.00 0.00 1.73
84 85 3.627395 AGCCAGAAATGGTCACGAATA 57.373 42.857 0.00 0.00 0.00 1.75
85 86 2.496899 AGCCAGAAATGGTCACGAAT 57.503 45.000 0.00 0.00 0.00 3.34
86 87 2.270352 AAGCCAGAAATGGTCACGAA 57.730 45.000 0.00 0.00 0.00 3.85
87 88 2.151202 GAAAGCCAGAAATGGTCACGA 58.849 47.619 0.00 0.00 0.00 4.35
88 89 1.135972 CGAAAGCCAGAAATGGTCACG 60.136 52.381 0.00 0.00 0.00 4.35
89 90 1.200020 CCGAAAGCCAGAAATGGTCAC 59.800 52.381 0.00 0.00 0.00 3.67
90 91 1.533625 CCGAAAGCCAGAAATGGTCA 58.466 50.000 0.00 0.00 0.00 4.02
91 92 0.811281 CCCGAAAGCCAGAAATGGTC 59.189 55.000 0.00 0.00 0.00 4.02
92 93 1.250840 GCCCGAAAGCCAGAAATGGT 61.251 55.000 0.00 0.00 0.00 3.55
93 94 0.967380 AGCCCGAAAGCCAGAAATGG 60.967 55.000 0.00 0.00 0.00 3.16
94 95 0.890683 AAGCCCGAAAGCCAGAAATG 59.109 50.000 0.00 0.00 0.00 2.32
95 96 0.890683 CAAGCCCGAAAGCCAGAAAT 59.109 50.000 0.00 0.00 0.00 2.17
96 97 1.178534 CCAAGCCCGAAAGCCAGAAA 61.179 55.000 0.00 0.00 0.00 2.52
97 98 1.603455 CCAAGCCCGAAAGCCAGAA 60.603 57.895 0.00 0.00 0.00 3.02
98 99 2.034066 CCAAGCCCGAAAGCCAGA 59.966 61.111 0.00 0.00 0.00 3.86
99 100 3.064324 CCCAAGCCCGAAAGCCAG 61.064 66.667 0.00 0.00 0.00 4.85
695 696 9.474313 ACATGGTGTGAGTGGTATTAATAAAAT 57.526 29.630 0.00 0.00 0.00 1.82
696 697 8.871629 ACATGGTGTGAGTGGTATTAATAAAA 57.128 30.769 0.00 0.00 0.00 1.52
708 712 7.436376 CAGAGTACATATAACATGGTGTGAGTG 59.564 40.741 0.00 0.00 0.00 3.51
733 737 2.203280 CCCTTTGTGGTGCGGTCA 60.203 61.111 0.00 0.00 0.00 4.02
736 740 3.673484 CTGCCCTTTGTGGTGCGG 61.673 66.667 0.00 0.00 35.60 5.69
743 747 3.777522 AGAGATAGCTAACTGCCCTTTGT 59.222 43.478 8.44 0.00 44.23 2.83
787 797 8.023706 CCAAGTATAGCTTTCTTTGTTTCTTCC 58.976 37.037 0.00 0.00 34.69 3.46
802 812 8.685838 TTGTTGACTTTTTACCAAGTATAGCT 57.314 30.769 0.00 0.00 37.11 3.32
803 813 9.908152 ATTTGTTGACTTTTTACCAAGTATAGC 57.092 29.630 0.00 0.00 37.11 2.97
1037 1049 2.125753 CGCGCTTCTTGCTCCTCT 60.126 61.111 5.56 0.00 40.11 3.69
1066 1078 2.225369 CCTTGGGGAAGTGGAGGAATTT 60.225 50.000 0.00 0.00 33.58 1.82
1067 1079 1.359130 CCTTGGGGAAGTGGAGGAATT 59.641 52.381 0.00 0.00 33.58 2.17
1119 1131 3.284449 GGGTTGTCGTTGGCGCTT 61.284 61.111 7.64 0.00 38.14 4.68
1430 1451 1.305381 CCTCCGGAGACCACCTTCT 60.305 63.158 33.39 0.00 0.00 2.85
1857 1878 0.453390 GCTGCTGTGCCTACCAAATC 59.547 55.000 0.00 0.00 0.00 2.17
1927 1953 3.530535 GGGGCGTTAGTTAATCGGTTAA 58.469 45.455 0.00 0.00 0.00 2.01
2047 2076 7.396540 AATATCCTTGATTTGACTTGACACC 57.603 36.000 0.00 0.00 0.00 4.16
2080 2109 6.374333 TGTCCAAAGCAAATACAGATCCTTAC 59.626 38.462 0.00 0.00 0.00 2.34
2120 2150 8.862325 ATCACAAACAAGAATAATGGACACTA 57.138 30.769 0.00 0.00 0.00 2.74
2121 2151 7.448161 TGATCACAAACAAGAATAATGGACACT 59.552 33.333 0.00 0.00 0.00 3.55
2122 2152 7.592938 TGATCACAAACAAGAATAATGGACAC 58.407 34.615 0.00 0.00 0.00 3.67
2123 2153 7.757941 TGATCACAAACAAGAATAATGGACA 57.242 32.000 0.00 0.00 0.00 4.02
2124 2154 7.917505 GGATGATCACAAACAAGAATAATGGAC 59.082 37.037 0.00 0.00 0.00 4.02
2125 2155 7.068593 GGGATGATCACAAACAAGAATAATGGA 59.931 37.037 0.00 0.00 0.00 3.41
2126 2156 7.147863 TGGGATGATCACAAACAAGAATAATGG 60.148 37.037 0.00 0.00 0.00 3.16
2127 2157 7.774134 TGGGATGATCACAAACAAGAATAATG 58.226 34.615 0.00 0.00 0.00 1.90
2157 2187 1.464734 CTCCTAGAGAAGCACCACGA 58.535 55.000 0.00 0.00 0.00 4.35
2177 2207 6.142817 CGTTGGTCTAAAAGAATTTCCTGTG 58.857 40.000 0.00 0.00 37.28 3.66
2181 2211 4.022676 TGCCGTTGGTCTAAAAGAATTTCC 60.023 41.667 0.00 0.00 37.28 3.13
2183 2213 4.339814 TGTGCCGTTGGTCTAAAAGAATTT 59.660 37.500 0.00 0.00 42.41 1.82
2184 2214 3.886505 TGTGCCGTTGGTCTAAAAGAATT 59.113 39.130 0.00 0.00 0.00 2.17
2188 2218 3.701532 TTTGTGCCGTTGGTCTAAAAG 57.298 42.857 0.00 0.00 0.00 2.27
2200 2230 3.429085 GCATTAGTGATCTTTTGTGCCG 58.571 45.455 0.00 0.00 0.00 5.69
2221 2252 3.669251 TTTTATTGTTTCCAAGCCCGG 57.331 42.857 0.00 0.00 33.17 5.73
2250 2281 1.475403 TGTTTCCTCACCCGCAAAAA 58.525 45.000 0.00 0.00 0.00 1.94
2251 2282 1.475403 TTGTTTCCTCACCCGCAAAA 58.525 45.000 0.00 0.00 0.00 2.44
2252 2283 1.698506 ATTGTTTCCTCACCCGCAAA 58.301 45.000 0.00 0.00 0.00 3.68
2253 2284 2.570415 TATTGTTTCCTCACCCGCAA 57.430 45.000 0.00 0.00 0.00 4.85
2254 2285 2.570415 TTATTGTTTCCTCACCCGCA 57.430 45.000 0.00 0.00 0.00 5.69
2255 2286 3.926821 TTTTATTGTTTCCTCACCCGC 57.073 42.857 0.00 0.00 0.00 6.13
2273 2304 6.851609 TGTGCAGCGTATATTCAAGATTTTT 58.148 32.000 0.00 0.00 0.00 1.94
2279 2310 5.221891 AGTTTGTGCAGCGTATATTCAAG 57.778 39.130 0.00 0.00 0.00 3.02
2300 2331 9.551734 TCATGTGGATCTGACTATGAATTTAAG 57.448 33.333 0.00 0.00 0.00 1.85
2341 2372 7.706159 TCATAGCATTGTGAATGTTTATGGTC 58.294 34.615 15.32 0.00 41.01 4.02
2360 2391 0.036577 AGCGCCATCATCCTCATAGC 60.037 55.000 2.29 0.00 0.00 2.97
2364 2395 2.493675 GTCTATAGCGCCATCATCCTCA 59.506 50.000 2.29 0.00 0.00 3.86
2382 2413 4.955811 TGACATCCTATTATTGCCGTCT 57.044 40.909 0.00 0.00 0.00 4.18
2395 2426 4.322057 AAACCCTATGCTTTGACATCCT 57.678 40.909 0.00 0.00 0.00 3.24
2418 2449 9.717942 TGGAAGTTTCTTTGAAAGAATTTTTCA 57.282 25.926 19.81 17.38 46.15 2.69
2425 2457 7.416964 TCCAATGGAAGTTTCTTTGAAAGAA 57.583 32.000 15.81 15.81 45.30 2.52
2440 2472 8.477419 AAAGTAGACTGAAAATTCCAATGGAA 57.523 30.769 17.95 17.95 46.39 3.53
2442 2474 9.626045 GTAAAAGTAGACTGAAAATTCCAATGG 57.374 33.333 0.00 0.00 0.00 3.16
2454 2486 8.332996 AGACTAATCGTGTAAAAGTAGACTGA 57.667 34.615 0.00 0.00 0.00 3.41
2462 2494 8.073355 ACAGAACAAGACTAATCGTGTAAAAG 57.927 34.615 0.00 0.00 45.43 2.27
2504 2536 3.204606 AGAGTATAGTGCCCTCACCTACA 59.795 47.826 0.00 0.00 44.16 2.74
2564 2596 2.710377 ACTGCACAACAACTTGACTCA 58.290 42.857 0.00 0.00 0.00 3.41
2728 2760 9.912634 GGATTGAAACTGAAATTCATTGACTTA 57.087 29.630 0.00 0.00 36.72 2.24
2729 2761 8.645110 AGGATTGAAACTGAAATTCATTGACTT 58.355 29.630 0.00 0.00 36.72 3.01
2730 2762 8.186709 AGGATTGAAACTGAAATTCATTGACT 57.813 30.769 0.00 0.00 36.72 3.41
2731 2763 8.822652 AAGGATTGAAACTGAAATTCATTGAC 57.177 30.769 0.00 0.00 36.72 3.18
2789 2821 6.144625 AGGGGTTCAACCTGGTTAATAAAAA 58.855 36.000 12.53 0.00 38.64 1.94
2790 2822 5.718039 AGGGGTTCAACCTGGTTAATAAAA 58.282 37.500 12.53 0.00 38.64 1.52
2791 2823 5.342361 AGGGGTTCAACCTGGTTAATAAA 57.658 39.130 12.53 2.06 38.64 1.40
2792 2824 5.342361 AAGGGGTTCAACCTGGTTAATAA 57.658 39.130 12.53 4.53 38.63 1.40
2793 2825 5.326900 GAAAGGGGTTCAACCTGGTTAATA 58.673 41.667 12.53 0.00 38.63 0.98
2794 2826 3.915346 AAGGGGTTCAACCTGGTTAAT 57.085 42.857 12.53 0.00 38.63 1.40
2795 2827 3.568443 GAAAGGGGTTCAACCTGGTTAA 58.432 45.455 12.53 0.00 38.63 2.01
2796 2828 2.158430 GGAAAGGGGTTCAACCTGGTTA 60.158 50.000 12.53 0.00 38.63 2.85
2797 2829 1.412505 GGAAAGGGGTTCAACCTGGTT 60.413 52.381 6.51 6.18 38.63 3.67
2798 2830 0.187606 GGAAAGGGGTTCAACCTGGT 59.812 55.000 6.51 0.00 38.63 4.00
2799 2831 0.187361 TGGAAAGGGGTTCAACCTGG 59.813 55.000 6.51 0.00 38.63 4.45
2800 2832 3.839979 TGGAAAGGGGTTCAACCTG 57.160 52.632 6.51 0.00 38.63 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.