Multiple sequence alignment - TraesCS5D01G195100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G195100 chr5D 100.000 6811 0 0 1 6811 298856811 298863621 0.000000e+00 12578
1 TraesCS5D01G195100 chr5D 94.356 567 26 5 1 562 298791415 298791980 0.000000e+00 865
2 TraesCS5D01G195100 chr5D 96.667 300 10 0 2299 2598 355310812 355311111 3.670000e-137 499
3 TraesCS5D01G195100 chr5A 92.276 3871 195 43 2994 6811 398930128 398926309 0.000000e+00 5397
4 TraesCS5D01G195100 chr5A 89.673 1588 108 25 745 2308 398931676 398930121 0.000000e+00 1973
5 TraesCS5D01G195100 chr5A 91.573 178 15 0 564 741 502803564 502803741 5.280000e-61 246
6 TraesCS5D01G195100 chr5B 96.397 2276 77 4 4514 6785 339533747 339536021 0.000000e+00 3744
7 TraesCS5D01G195100 chr5B 96.937 751 19 1 3766 4516 339532878 339533624 0.000000e+00 1256
8 TraesCS5D01G195100 chr5B 92.468 770 37 12 1555 2310 339530846 339531608 0.000000e+00 1081
9 TraesCS5D01G195100 chr5B 89.186 786 43 9 2990 3760 339531597 339532355 0.000000e+00 942
10 TraesCS5D01G195100 chr5B 91.284 631 37 6 932 1556 339530145 339530763 0.000000e+00 845
11 TraesCS5D01G195100 chr5B 97.194 392 10 1 2609 2999 656783294 656783685 0.000000e+00 662
12 TraesCS5D01G195100 chr5B 97.000 300 9 0 2299 2598 656783705 656783406 7.880000e-139 505
13 TraesCS5D01G195100 chr3D 92.609 663 40 7 2332 2989 441366537 441367195 0.000000e+00 944
14 TraesCS5D01G195100 chr3D 97.667 300 7 0 2299 2598 404001480 404001779 3.640000e-142 516
15 TraesCS5D01G195100 chr6D 94.709 567 23 6 1 562 291357130 291356566 0.000000e+00 874
16 TraesCS5D01G195100 chr3B 94.552 569 23 7 1 563 175061652 175061086 0.000000e+00 872
17 TraesCS5D01G195100 chr1D 94.376 569 26 6 1 564 126596406 126596973 0.000000e+00 869
18 TraesCS5D01G195100 chr1D 94.190 568 27 6 1 562 89332163 89331596 0.000000e+00 861
19 TraesCS5D01G195100 chr1D 94.180 567 27 5 1 562 228885695 228885130 0.000000e+00 859
20 TraesCS5D01G195100 chr4D 94.180 567 28 4 1 562 124227861 124227295 0.000000e+00 859
21 TraesCS5D01G195100 chr4D 94.652 561 19 8 1 555 479948252 479947697 0.000000e+00 859
22 TraesCS5D01G195100 chr2D 94.180 567 26 6 1 562 93664382 93663818 0.000000e+00 857
23 TraesCS5D01G195100 chr2D 91.011 178 16 0 564 741 548269361 548269184 2.450000e-59 241
24 TraesCS5D01G195100 chr4B 97.442 391 9 1 2609 2998 560235793 560235403 0.000000e+00 665
25 TraesCS5D01G195100 chr4B 92.135 178 14 0 564 741 656685622 656685799 1.130000e-62 252
26 TraesCS5D01G195100 chr7A 97.194 392 10 1 2609 2999 104653386 104653777 0.000000e+00 662
27 TraesCS5D01G195100 chr7A 97.194 392 10 1 2609 2999 586277992 586277601 0.000000e+00 662
28 TraesCS5D01G195100 chr7A 96.667 300 10 0 2299 2598 586198007 586197708 3.670000e-137 499
29 TraesCS5D01G195100 chr1B 97.194 392 10 1 2609 2999 313489942 313489551 0.000000e+00 662
30 TraesCS5D01G195100 chr1B 97.423 388 8 2 2609 2995 670857956 670858342 0.000000e+00 660
31 TraesCS5D01G195100 chr1B 96.939 392 10 2 2609 2999 39718988 39718598 0.000000e+00 656
32 TraesCS5D01G195100 chr1B 97.000 300 9 0 2299 2598 313489531 313489830 7.880000e-139 505
33 TraesCS5D01G195100 chr1B 92.000 175 14 0 563 737 341397622 341397796 5.280000e-61 246
34 TraesCS5D01G195100 chr1B 91.954 174 14 0 564 737 228570266 228570439 1.900000e-60 244
35 TraesCS5D01G195100 chr1B 91.011 178 16 0 564 741 190528670 190528493 2.450000e-59 241
36 TraesCS5D01G195100 chr6A 96.939 392 10 2 2609 2999 568003345 568002955 0.000000e+00 656
37 TraesCS5D01G195100 chr6A 96.990 299 8 1 2300 2598 568002936 568003233 1.020000e-137 501
38 TraesCS5D01G195100 chr2B 97.000 300 8 1 2299 2598 97978057 97978355 2.840000e-138 503
39 TraesCS5D01G195100 chr2B 91.061 179 16 0 563 741 694214879 694214701 6.820000e-60 243
40 TraesCS5D01G195100 chrUn 96.091 307 8 4 2299 2602 67785579 67785884 1.320000e-136 497
41 TraesCS5D01G195100 chr6B 92.179 179 14 0 563 741 56384774 56384596 3.150000e-63 254
42 TraesCS5D01G195100 chr4A 91.620 179 15 0 563 741 710344558 710344380 1.470000e-61 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G195100 chr5D 298856811 298863621 6810 False 12578.0 12578 100.0000 1 6811 1 chr5D.!!$F2 6810
1 TraesCS5D01G195100 chr5D 298791415 298791980 565 False 865.0 865 94.3560 1 562 1 chr5D.!!$F1 561
2 TraesCS5D01G195100 chr5A 398926309 398931676 5367 True 3685.0 5397 90.9745 745 6811 2 chr5A.!!$R1 6066
3 TraesCS5D01G195100 chr5B 339530145 339536021 5876 False 1573.6 3744 93.2544 932 6785 5 chr5B.!!$F2 5853
4 TraesCS5D01G195100 chr3D 441366537 441367195 658 False 944.0 944 92.6090 2332 2989 1 chr3D.!!$F2 657
5 TraesCS5D01G195100 chr6D 291356566 291357130 564 True 874.0 874 94.7090 1 562 1 chr6D.!!$R1 561
6 TraesCS5D01G195100 chr3B 175061086 175061652 566 True 872.0 872 94.5520 1 563 1 chr3B.!!$R1 562
7 TraesCS5D01G195100 chr1D 126596406 126596973 567 False 869.0 869 94.3760 1 564 1 chr1D.!!$F1 563
8 TraesCS5D01G195100 chr1D 89331596 89332163 567 True 861.0 861 94.1900 1 562 1 chr1D.!!$R1 561
9 TraesCS5D01G195100 chr1D 228885130 228885695 565 True 859.0 859 94.1800 1 562 1 chr1D.!!$R2 561
10 TraesCS5D01G195100 chr4D 124227295 124227861 566 True 859.0 859 94.1800 1 562 1 chr4D.!!$R1 561
11 TraesCS5D01G195100 chr4D 479947697 479948252 555 True 859.0 859 94.6520 1 555 1 chr4D.!!$R2 554
12 TraesCS5D01G195100 chr2D 93663818 93664382 564 True 857.0 857 94.1800 1 562 1 chr2D.!!$R1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 715 0.036732 AGATTCGGCTTCACTGGCAA 59.963 50.0 0.00 0.0 0.0 4.52 F
1175 1203 0.108774 CCCCTCCGCTTTATCCCTTC 59.891 60.0 0.00 0.0 0.0 3.46 F
3104 3245 0.106167 AGGGTCAGCTATCCTGCGTA 60.106 55.0 6.36 0.0 41.5 4.42 F
3909 4579 0.175760 TAGGCCACGCATTGACTCTC 59.824 55.0 5.01 0.0 0.0 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2599 2734 1.067295 ACATTTGTCCTGAGGGCTCA 58.933 50.0 4.08 0.00 38.06 4.26 R
3152 3293 0.673333 TACCTGGCATGCGTGAACAG 60.673 55.0 18.77 18.77 33.96 3.16 R
3923 4593 1.054231 TGCAATGTCATTTTGGCCCA 58.946 45.0 0.00 0.00 0.00 5.36 R
5848 6662 0.249489 CTATGGAGCCCAGTACACGC 60.249 60.0 0.00 0.00 36.75 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
325 334 5.925509 TCTGGTAGTTATTGGCTCCAATAC 58.074 41.667 18.19 11.01 45.23 1.89
467 477 5.385509 GGTGTGTACCTTGCAAATTATGT 57.614 39.130 0.00 0.00 43.97 2.29
476 486 7.288810 ACCTTGCAAATTATGTGAGAAAAGA 57.711 32.000 0.00 0.00 0.00 2.52
477 487 7.899973 ACCTTGCAAATTATGTGAGAAAAGAT 58.100 30.769 0.00 0.00 0.00 2.40
573 583 5.973651 TGAACGTATCATGAATCAGCTTC 57.026 39.130 0.00 0.00 31.50 3.86
574 584 4.504097 TGAACGTATCATGAATCAGCTTCG 59.496 41.667 0.00 0.00 32.75 3.79
575 585 2.797156 ACGTATCATGAATCAGCTTCGC 59.203 45.455 0.00 0.00 36.60 4.70
576 586 2.156504 CGTATCATGAATCAGCTTCGCC 59.843 50.000 0.00 0.00 36.60 5.54
577 587 2.336945 ATCATGAATCAGCTTCGCCA 57.663 45.000 0.00 0.00 36.60 5.69
578 588 1.372582 TCATGAATCAGCTTCGCCAC 58.627 50.000 0.00 0.00 36.60 5.01
579 589 1.065926 TCATGAATCAGCTTCGCCACT 60.066 47.619 0.00 0.00 36.60 4.00
580 590 2.168313 TCATGAATCAGCTTCGCCACTA 59.832 45.455 0.00 0.00 36.60 2.74
581 591 2.760634 TGAATCAGCTTCGCCACTAA 57.239 45.000 0.00 0.00 36.60 2.24
582 592 3.052455 TGAATCAGCTTCGCCACTAAA 57.948 42.857 0.00 0.00 36.60 1.85
583 593 3.002791 TGAATCAGCTTCGCCACTAAAG 58.997 45.455 0.00 0.00 36.60 1.85
584 594 2.770164 ATCAGCTTCGCCACTAAAGT 57.230 45.000 0.00 0.00 0.00 2.66
585 595 3.887621 ATCAGCTTCGCCACTAAAGTA 57.112 42.857 0.00 0.00 0.00 2.24
586 596 2.955614 TCAGCTTCGCCACTAAAGTAC 58.044 47.619 0.00 0.00 0.00 2.73
587 597 2.297880 TCAGCTTCGCCACTAAAGTACA 59.702 45.455 0.00 0.00 0.00 2.90
588 598 2.412089 CAGCTTCGCCACTAAAGTACAC 59.588 50.000 0.00 0.00 0.00 2.90
589 599 2.299297 AGCTTCGCCACTAAAGTACACT 59.701 45.455 0.00 0.00 0.00 3.55
590 600 3.064931 GCTTCGCCACTAAAGTACACTT 58.935 45.455 0.00 0.00 37.91 3.16
591 601 3.497262 GCTTCGCCACTAAAGTACACTTT 59.503 43.478 11.78 11.78 46.78 2.66
592 602 4.610680 GCTTCGCCACTAAAGTACACTTTG 60.611 45.833 15.87 9.27 45.01 2.77
593 603 4.325028 TCGCCACTAAAGTACACTTTGA 57.675 40.909 15.87 2.71 45.01 2.69
594 604 4.304110 TCGCCACTAAAGTACACTTTGAG 58.696 43.478 15.87 11.57 45.01 3.02
595 605 3.432252 CGCCACTAAAGTACACTTTGAGG 59.568 47.826 15.87 14.41 45.01 3.86
596 606 4.386711 GCCACTAAAGTACACTTTGAGGT 58.613 43.478 15.87 9.72 45.01 3.85
597 607 4.213482 GCCACTAAAGTACACTTTGAGGTG 59.787 45.833 15.87 17.85 45.01 4.00
598 608 4.213482 CCACTAAAGTACACTTTGAGGTGC 59.787 45.833 15.87 0.00 45.01 5.01
599 609 5.057149 CACTAAAGTACACTTTGAGGTGCT 58.943 41.667 15.87 0.00 45.01 4.40
600 610 5.527582 CACTAAAGTACACTTTGAGGTGCTT 59.472 40.000 15.87 0.00 45.01 3.91
601 611 5.758784 ACTAAAGTACACTTTGAGGTGCTTC 59.241 40.000 15.87 0.00 45.01 3.86
602 612 3.838244 AGTACACTTTGAGGTGCTTCA 57.162 42.857 0.00 0.00 40.52 3.02
603 613 3.733337 AGTACACTTTGAGGTGCTTCAG 58.267 45.455 0.00 0.00 40.52 3.02
604 614 3.388024 AGTACACTTTGAGGTGCTTCAGA 59.612 43.478 0.00 0.00 40.52 3.27
605 615 3.281727 ACACTTTGAGGTGCTTCAGAA 57.718 42.857 0.00 0.00 40.52 3.02
606 616 3.620488 ACACTTTGAGGTGCTTCAGAAA 58.380 40.909 0.00 0.00 40.52 2.52
607 617 4.016444 ACACTTTGAGGTGCTTCAGAAAA 58.984 39.130 0.00 0.00 40.52 2.29
608 618 4.646492 ACACTTTGAGGTGCTTCAGAAAAT 59.354 37.500 0.00 0.00 40.52 1.82
609 619 5.127682 ACACTTTGAGGTGCTTCAGAAAATT 59.872 36.000 0.00 0.00 40.52 1.82
610 620 5.461078 CACTTTGAGGTGCTTCAGAAAATTG 59.539 40.000 0.00 0.00 0.00 2.32
611 621 3.648339 TGAGGTGCTTCAGAAAATTGC 57.352 42.857 0.00 0.00 0.00 3.56
612 622 2.957680 TGAGGTGCTTCAGAAAATTGCA 59.042 40.909 0.00 0.00 0.00 4.08
621 631 7.853524 TGCTTCAGAAAATTGCACTAAAAATG 58.146 30.769 0.00 0.00 0.00 2.32
622 632 7.041916 TGCTTCAGAAAATTGCACTAAAAATGG 60.042 33.333 0.00 0.00 0.00 3.16
623 633 6.783892 TCAGAAAATTGCACTAAAAATGGC 57.216 33.333 0.00 0.00 0.00 4.40
624 634 5.700373 TCAGAAAATTGCACTAAAAATGGCC 59.300 36.000 0.00 0.00 0.00 5.36
625 635 5.003160 AGAAAATTGCACTAAAAATGGCCC 58.997 37.500 0.00 0.00 0.00 5.80
626 636 4.363991 AAATTGCACTAAAAATGGCCCA 57.636 36.364 0.00 0.00 0.00 5.36
627 637 4.363991 AATTGCACTAAAAATGGCCCAA 57.636 36.364 0.00 0.00 0.00 4.12
628 638 3.845781 TTGCACTAAAAATGGCCCAAA 57.154 38.095 0.00 0.00 0.00 3.28
629 639 3.845781 TGCACTAAAAATGGCCCAAAA 57.154 38.095 0.00 0.00 0.00 2.44
630 640 4.156455 TGCACTAAAAATGGCCCAAAAA 57.844 36.364 0.00 0.00 0.00 1.94
631 641 3.879892 TGCACTAAAAATGGCCCAAAAAC 59.120 39.130 0.00 0.00 0.00 2.43
632 642 3.879892 GCACTAAAAATGGCCCAAAAACA 59.120 39.130 0.00 0.00 0.00 2.83
633 643 4.024133 GCACTAAAAATGGCCCAAAAACAG 60.024 41.667 0.00 0.00 0.00 3.16
634 644 5.363939 CACTAAAAATGGCCCAAAAACAGA 58.636 37.500 0.00 0.00 0.00 3.41
635 645 5.997129 CACTAAAAATGGCCCAAAAACAGAT 59.003 36.000 0.00 0.00 0.00 2.90
636 646 6.486320 CACTAAAAATGGCCCAAAAACAGATT 59.514 34.615 0.00 0.00 0.00 2.40
637 647 6.710295 ACTAAAAATGGCCCAAAAACAGATTC 59.290 34.615 0.00 0.00 0.00 2.52
638 648 4.703379 AAATGGCCCAAAAACAGATTCA 57.297 36.364 0.00 0.00 0.00 2.57
639 649 3.967332 ATGGCCCAAAAACAGATTCAG 57.033 42.857 0.00 0.00 0.00 3.02
640 650 1.344114 TGGCCCAAAAACAGATTCAGC 59.656 47.619 0.00 0.00 0.00 4.26
641 651 1.620323 GGCCCAAAAACAGATTCAGCT 59.380 47.619 0.00 0.00 0.00 4.24
642 652 2.037641 GGCCCAAAAACAGATTCAGCTT 59.962 45.455 0.00 0.00 0.00 3.74
643 653 3.320626 GCCCAAAAACAGATTCAGCTTC 58.679 45.455 0.00 0.00 0.00 3.86
644 654 3.243839 GCCCAAAAACAGATTCAGCTTCA 60.244 43.478 0.00 0.00 0.00 3.02
645 655 4.562143 GCCCAAAAACAGATTCAGCTTCAT 60.562 41.667 0.00 0.00 0.00 2.57
646 656 5.544650 CCCAAAAACAGATTCAGCTTCATT 58.455 37.500 0.00 0.00 0.00 2.57
647 657 5.407387 CCCAAAAACAGATTCAGCTTCATTG 59.593 40.000 0.00 0.00 0.00 2.82
648 658 5.407387 CCAAAAACAGATTCAGCTTCATTGG 59.593 40.000 0.00 0.00 0.00 3.16
649 659 5.796424 AAAACAGATTCAGCTTCATTGGT 57.204 34.783 0.00 0.00 0.00 3.67
650 660 6.899393 AAAACAGATTCAGCTTCATTGGTA 57.101 33.333 0.00 0.00 0.00 3.25
651 661 6.899393 AAACAGATTCAGCTTCATTGGTAA 57.101 33.333 0.00 0.00 0.00 2.85
652 662 6.899393 AACAGATTCAGCTTCATTGGTAAA 57.101 33.333 0.00 0.00 0.00 2.01
653 663 6.506500 ACAGATTCAGCTTCATTGGTAAAG 57.493 37.500 0.00 0.00 0.00 1.85
654 664 5.105997 ACAGATTCAGCTTCATTGGTAAAGC 60.106 40.000 0.00 0.00 46.52 3.51
661 671 4.676546 GCTTCATTGGTAAAGCTGATTCC 58.323 43.478 0.00 0.00 43.57 3.01
662 672 4.158394 GCTTCATTGGTAAAGCTGATTCCA 59.842 41.667 0.00 0.00 43.57 3.53
663 673 5.336690 GCTTCATTGGTAAAGCTGATTCCAA 60.337 40.000 11.60 11.60 43.57 3.53
664 674 6.662865 TTCATTGGTAAAGCTGATTCCAAA 57.337 33.333 12.77 0.00 40.71 3.28
665 675 6.855763 TCATTGGTAAAGCTGATTCCAAAT 57.144 33.333 12.77 2.85 40.71 2.32
666 676 7.953005 TCATTGGTAAAGCTGATTCCAAATA 57.047 32.000 12.77 4.32 40.71 1.40
667 677 7.999679 TCATTGGTAAAGCTGATTCCAAATAG 58.000 34.615 12.77 7.92 40.71 1.73
668 678 5.835113 TGGTAAAGCTGATTCCAAATAGC 57.165 39.130 0.00 0.00 36.45 2.97
670 680 5.357878 TGGTAAAGCTGATTCCAAATAGCTG 59.642 40.000 0.00 0.00 45.09 4.24
671 681 5.358160 GGTAAAGCTGATTCCAAATAGCTGT 59.642 40.000 0.00 0.00 45.09 4.40
672 682 5.990120 AAAGCTGATTCCAAATAGCTGTT 57.010 34.783 0.00 0.00 45.09 3.16
673 683 5.990120 AAGCTGATTCCAAATAGCTGTTT 57.010 34.783 2.11 2.11 45.09 2.83
674 684 5.320549 AGCTGATTCCAAATAGCTGTTTG 57.679 39.130 24.49 24.49 44.23 2.93
675 685 4.768968 AGCTGATTCCAAATAGCTGTTTGT 59.231 37.500 27.61 14.32 44.23 2.83
676 686 5.244626 AGCTGATTCCAAATAGCTGTTTGTT 59.755 36.000 27.61 15.85 44.23 2.83
677 687 5.928264 GCTGATTCCAAATAGCTGTTTGTTT 59.072 36.000 27.61 15.56 37.37 2.83
678 688 6.089954 GCTGATTCCAAATAGCTGTTTGTTTC 59.910 38.462 27.61 21.33 37.37 2.78
679 689 6.148948 TGATTCCAAATAGCTGTTTGTTTCG 58.851 36.000 27.61 16.11 37.37 3.46
680 690 4.497473 TCCAAATAGCTGTTTGTTTCGG 57.503 40.909 27.61 16.15 37.37 4.30
681 691 4.138290 TCCAAATAGCTGTTTGTTTCGGA 58.862 39.130 27.61 17.85 37.37 4.55
682 692 4.764823 TCCAAATAGCTGTTTGTTTCGGAT 59.235 37.500 27.61 0.00 37.37 4.18
683 693 5.242838 TCCAAATAGCTGTTTGTTTCGGATT 59.757 36.000 27.61 0.14 37.37 3.01
684 694 5.572896 CCAAATAGCTGTTTGTTTCGGATTC 59.427 40.000 27.61 0.00 37.37 2.52
685 695 6.381801 CAAATAGCTGTTTGTTTCGGATTCT 58.618 36.000 23.49 0.00 35.02 2.40
686 696 7.361713 CCAAATAGCTGTTTGTTTCGGATTCTA 60.362 37.037 27.61 0.00 37.37 2.10
687 697 6.910536 ATAGCTGTTTGTTTCGGATTCTAG 57.089 37.500 0.00 0.00 0.00 2.43
688 698 4.894784 AGCTGTTTGTTTCGGATTCTAGA 58.105 39.130 0.00 0.00 0.00 2.43
689 699 5.491982 AGCTGTTTGTTTCGGATTCTAGAT 58.508 37.500 0.00 0.00 0.00 1.98
690 700 5.940470 AGCTGTTTGTTTCGGATTCTAGATT 59.060 36.000 0.00 0.00 0.00 2.40
691 701 6.092807 AGCTGTTTGTTTCGGATTCTAGATTC 59.907 38.462 6.14 6.14 0.00 2.52
692 702 6.403333 TGTTTGTTTCGGATTCTAGATTCG 57.597 37.500 8.21 6.16 0.00 3.34
693 703 5.350365 TGTTTGTTTCGGATTCTAGATTCGG 59.650 40.000 13.28 13.28 0.00 4.30
694 704 3.454375 TGTTTCGGATTCTAGATTCGGC 58.546 45.455 14.21 5.05 0.00 5.54
695 705 3.132289 TGTTTCGGATTCTAGATTCGGCT 59.868 43.478 14.21 0.00 0.00 5.52
696 706 4.120589 GTTTCGGATTCTAGATTCGGCTT 58.879 43.478 14.21 0.00 0.00 4.35
697 707 3.644884 TCGGATTCTAGATTCGGCTTC 57.355 47.619 14.21 0.00 0.00 3.86
698 708 2.956333 TCGGATTCTAGATTCGGCTTCA 59.044 45.455 14.21 0.00 0.00 3.02
699 709 3.053455 CGGATTCTAGATTCGGCTTCAC 58.947 50.000 8.21 0.00 0.00 3.18
700 710 3.243569 CGGATTCTAGATTCGGCTTCACT 60.244 47.826 8.21 0.00 0.00 3.41
701 711 4.054671 GGATTCTAGATTCGGCTTCACTG 58.945 47.826 8.21 0.00 0.00 3.66
702 712 3.526931 TTCTAGATTCGGCTTCACTGG 57.473 47.619 0.00 0.00 0.00 4.00
703 713 1.137086 TCTAGATTCGGCTTCACTGGC 59.863 52.381 0.00 0.00 0.00 4.85
704 714 0.901827 TAGATTCGGCTTCACTGGCA 59.098 50.000 0.00 0.00 0.00 4.92
705 715 0.036732 AGATTCGGCTTCACTGGCAA 59.963 50.000 0.00 0.00 0.00 4.52
706 716 0.881118 GATTCGGCTTCACTGGCAAA 59.119 50.000 0.00 0.00 0.00 3.68
707 717 1.269448 GATTCGGCTTCACTGGCAAAA 59.731 47.619 0.00 0.00 0.00 2.44
708 718 0.383949 TTCGGCTTCACTGGCAAAAC 59.616 50.000 0.00 0.00 0.00 2.43
709 719 0.465460 TCGGCTTCACTGGCAAAACT 60.465 50.000 0.00 0.00 0.00 2.66
710 720 0.318107 CGGCTTCACTGGCAAAACTG 60.318 55.000 0.00 0.00 0.00 3.16
711 721 1.032014 GGCTTCACTGGCAAAACTGA 58.968 50.000 0.00 0.00 0.00 3.41
712 722 1.408702 GGCTTCACTGGCAAAACTGAA 59.591 47.619 0.00 0.00 0.00 3.02
713 723 2.036346 GGCTTCACTGGCAAAACTGAAT 59.964 45.455 0.00 0.00 0.00 2.57
714 724 3.311966 GCTTCACTGGCAAAACTGAATC 58.688 45.455 0.00 0.00 0.00 2.52
715 725 3.005155 GCTTCACTGGCAAAACTGAATCT 59.995 43.478 0.00 0.00 0.00 2.40
716 726 4.543692 CTTCACTGGCAAAACTGAATCTG 58.456 43.478 0.00 0.00 0.00 2.90
717 727 2.886523 TCACTGGCAAAACTGAATCTGG 59.113 45.455 0.00 0.00 0.00 3.86
718 728 2.624838 CACTGGCAAAACTGAATCTGGT 59.375 45.455 0.00 0.00 0.00 4.00
719 729 2.887152 ACTGGCAAAACTGAATCTGGTC 59.113 45.455 0.00 0.00 0.00 4.02
720 730 3.152341 CTGGCAAAACTGAATCTGGTCT 58.848 45.455 0.00 0.00 0.00 3.85
721 731 3.149196 TGGCAAAACTGAATCTGGTCTC 58.851 45.455 0.00 0.00 0.00 3.36
722 732 3.149196 GGCAAAACTGAATCTGGTCTCA 58.851 45.455 0.00 0.00 0.00 3.27
723 733 3.190118 GGCAAAACTGAATCTGGTCTCAG 59.810 47.826 0.00 0.00 43.90 3.35
733 743 3.594603 TCTGGTCTCAGAATCCGAAAC 57.405 47.619 0.00 0.00 46.08 2.78
734 744 2.897326 TCTGGTCTCAGAATCCGAAACA 59.103 45.455 0.00 0.00 46.08 2.83
735 745 3.323691 TCTGGTCTCAGAATCCGAAACAA 59.676 43.478 0.00 0.00 46.08 2.83
736 746 4.065088 CTGGTCTCAGAATCCGAAACAAA 58.935 43.478 0.00 0.00 43.49 2.83
737 747 4.065088 TGGTCTCAGAATCCGAAACAAAG 58.935 43.478 0.00 0.00 0.00 2.77
738 748 4.202315 TGGTCTCAGAATCCGAAACAAAGA 60.202 41.667 0.00 0.00 0.00 2.52
739 749 4.390297 GGTCTCAGAATCCGAAACAAAGAG 59.610 45.833 0.00 0.00 0.00 2.85
740 750 4.390297 GTCTCAGAATCCGAAACAAAGAGG 59.610 45.833 0.00 0.00 0.00 3.69
741 751 4.283467 TCTCAGAATCCGAAACAAAGAGGA 59.717 41.667 0.00 0.00 37.17 3.71
742 752 4.315803 TCAGAATCCGAAACAAAGAGGAC 58.684 43.478 0.00 0.00 35.36 3.85
743 753 3.123621 CAGAATCCGAAACAAAGAGGACG 59.876 47.826 0.00 0.00 35.36 4.79
751 761 4.743644 CGAAACAAAGAGGACGTTAGAGTT 59.256 41.667 0.00 0.00 0.00 3.01
755 765 5.855045 ACAAAGAGGACGTTAGAGTTTCAT 58.145 37.500 0.00 0.00 0.00 2.57
760 770 5.357596 AGAGGACGTTAGAGTTTCATCCTAC 59.642 44.000 0.00 0.00 35.23 3.18
795 807 3.521524 AAGTTCAAATCGACTCGTTGC 57.478 42.857 0.00 0.00 0.00 4.17
799 811 0.165944 CAAATCGACTCGTTGCCACC 59.834 55.000 0.00 0.00 0.00 4.61
873 886 8.412608 TGTGTTAAATTTTGCGAGAAATTTGA 57.587 26.923 21.90 15.56 44.53 2.69
878 891 5.905480 ATTTTGCGAGAAATTTGACCAAC 57.095 34.783 0.00 0.00 0.00 3.77
885 898 4.158394 CGAGAAATTTGACCAACCATCCAT 59.842 41.667 0.00 0.00 0.00 3.41
886 899 5.654497 GAGAAATTTGACCAACCATCCATC 58.346 41.667 0.00 0.00 0.00 3.51
887 900 4.467438 AGAAATTTGACCAACCATCCATCC 59.533 41.667 0.00 0.00 0.00 3.51
888 901 2.988636 TTTGACCAACCATCCATCCA 57.011 45.000 0.00 0.00 0.00 3.41
889 902 2.988636 TTGACCAACCATCCATCCAA 57.011 45.000 0.00 0.00 0.00 3.53
890 903 2.988636 TGACCAACCATCCATCCAAA 57.011 45.000 0.00 0.00 0.00 3.28
891 904 2.806434 TGACCAACCATCCATCCAAAG 58.194 47.619 0.00 0.00 0.00 2.77
892 905 2.109834 TGACCAACCATCCATCCAAAGT 59.890 45.455 0.00 0.00 0.00 2.66
935 948 4.315941 CCCCTCGCCTATTCCGCC 62.316 72.222 0.00 0.00 0.00 6.13
936 949 4.664677 CCCTCGCCTATTCCGCCG 62.665 72.222 0.00 0.00 0.00 6.46
979 1002 0.874607 GGCGTATCTTTCGGCGACAT 60.875 55.000 10.16 4.63 43.07 3.06
982 1005 1.707117 CGTATCTTTCGGCGACATACG 59.293 52.381 26.91 26.91 45.66 3.06
1006 1034 3.610619 CTGCCACACGCCATGGAGA 62.611 63.158 23.45 0.00 39.87 3.71
1029 1057 0.739813 CCGAGGCTAAGAAACCCACG 60.740 60.000 0.00 0.00 0.00 4.94
1167 1195 1.212195 GAGGTATTTCCCCTCCGCTTT 59.788 52.381 0.00 0.00 42.29 3.51
1174 1202 0.327191 TCCCCTCCGCTTTATCCCTT 60.327 55.000 0.00 0.00 0.00 3.95
1175 1203 0.108774 CCCCTCCGCTTTATCCCTTC 59.891 60.000 0.00 0.00 0.00 3.46
1176 1204 1.132500 CCCTCCGCTTTATCCCTTCT 58.868 55.000 0.00 0.00 0.00 2.85
1177 1205 1.490910 CCCTCCGCTTTATCCCTTCTT 59.509 52.381 0.00 0.00 0.00 2.52
1178 1206 2.565841 CCTCCGCTTTATCCCTTCTTG 58.434 52.381 0.00 0.00 0.00 3.02
1179 1207 1.943340 CTCCGCTTTATCCCTTCTTGC 59.057 52.381 0.00 0.00 0.00 4.01
1180 1208 1.559682 TCCGCTTTATCCCTTCTTGCT 59.440 47.619 0.00 0.00 0.00 3.91
1181 1209 1.943340 CCGCTTTATCCCTTCTTGCTC 59.057 52.381 0.00 0.00 0.00 4.26
1182 1210 2.420687 CCGCTTTATCCCTTCTTGCTCT 60.421 50.000 0.00 0.00 0.00 4.09
1183 1211 3.274288 CGCTTTATCCCTTCTTGCTCTT 58.726 45.455 0.00 0.00 0.00 2.85
1186 1214 4.335037 GCTTTATCCCTTCTTGCTCTTCTG 59.665 45.833 0.00 0.00 0.00 3.02
1197 1225 0.389687 GCTCTTCTGCGTGCTCTTCT 60.390 55.000 0.00 0.00 0.00 2.85
1198 1226 1.938926 GCTCTTCTGCGTGCTCTTCTT 60.939 52.381 0.00 0.00 0.00 2.52
1204 1232 2.740055 CGTGCTCTTCTTGGCGCT 60.740 61.111 7.64 0.00 36.89 5.92
1210 1238 1.946283 GCTCTTCTTGGCGCTAGGTTT 60.946 52.381 7.64 0.00 0.00 3.27
1227 1255 6.207614 GCTAGGTTTGATCTCTCCTTTGTTTT 59.792 38.462 8.05 0.00 0.00 2.43
1310 1338 5.236478 CCTATCGATTTACAAGGTGCGATTT 59.764 40.000 1.71 0.00 39.02 2.17
1320 1348 3.004752 AGGTGCGATTTAGAAATGCCT 57.995 42.857 0.00 0.00 0.00 4.75
1324 1352 3.003378 GTGCGATTTAGAAATGCCTACCC 59.997 47.826 0.00 0.00 0.00 3.69
1368 1396 1.728971 CGCTCTGTAGTCCAGCAAAAG 59.271 52.381 0.00 0.00 41.25 2.27
1384 1412 5.006165 CAGCAAAAGCTGTAGAGTATGCTAC 59.994 44.000 9.20 0.00 40.62 3.58
1385 1413 4.870426 GCAAAAGCTGTAGAGTATGCTACA 59.130 41.667 0.00 0.00 46.14 2.74
1402 1430 1.238439 ACAATTCCGGTGTGCAAGAG 58.762 50.000 0.00 0.00 0.00 2.85
1412 1440 0.468226 TGTGCAAGAGAAAGACGGGT 59.532 50.000 0.00 0.00 0.00 5.28
1463 1497 1.426041 AACCCGCGTATGACGAATGC 61.426 55.000 4.92 0.00 46.05 3.56
1551 1585 4.201822 CCTCGGTGCTTATTTTACTTCTGC 60.202 45.833 0.00 0.00 0.00 4.26
1556 1590 6.455646 CGGTGCTTATTTTACTTCTGCACTAG 60.456 42.308 13.52 6.14 45.63 2.57
1690 1815 1.338105 TGCGAACTGAAGTGAGGATGG 60.338 52.381 0.00 0.00 0.00 3.51
1692 1817 2.872038 GCGAACTGAAGTGAGGATGGTT 60.872 50.000 0.00 0.00 0.00 3.67
1703 1828 4.229123 AGTGAGGATGGTTGGATCAAGATT 59.771 41.667 0.00 0.00 0.00 2.40
1746 1871 2.221169 TGGCTGTTGCAGAACTGTTAG 58.779 47.619 0.00 0.00 41.91 2.34
1877 2002 9.429359 ACAACAGTCAACAACATTTGATAAAAA 57.571 25.926 0.00 0.00 37.80 1.94
1965 2093 8.938801 TCATATATGCCTTTTGATGTAATGGT 57.061 30.769 7.92 0.00 0.00 3.55
2243 2375 8.774546 TTATTGGTTATGCAAATATCTTCCCA 57.225 30.769 0.00 0.00 0.00 4.37
2253 2385 5.128919 CAAATATCTTCCCAGAGTTCAGGG 58.871 45.833 3.31 3.31 43.44 4.45
2287 2419 4.185467 TGCAACAACATTTTGTGTGACT 57.815 36.364 0.00 0.00 45.69 3.41
2289 2421 4.388165 TGCAACAACATTTTGTGTGACTTG 59.612 37.500 0.00 0.00 45.69 3.16
2354 2488 2.424379 GGGAAAATCCATCCTACCACCC 60.424 54.545 0.00 0.00 38.64 4.61
2559 2694 6.743575 AAGAGCATACTCAAAACATGGTAC 57.256 37.500 0.00 0.00 46.09 3.34
2609 2744 5.719085 ACTACCTAATCATATGAGCCCTCAG 59.281 44.000 11.78 6.99 43.61 3.35
2680 2815 9.511144 TTTGTATGTTGTATGTAGTATCTGTCG 57.489 33.333 0.00 0.00 0.00 4.35
2686 2821 6.762702 TGTATGTAGTATCTGTCGAAACCA 57.237 37.500 0.00 0.00 0.00 3.67
2989 3127 9.225682 GATGGTAGGATGGATTTTCCCTATATA 57.774 37.037 0.00 0.00 35.03 0.86
2990 3128 9.764776 ATGGTAGGATGGATTTTCCCTATATAT 57.235 33.333 0.00 0.00 35.03 0.86
3051 3192 5.180680 GTCACCGTTGTTTTAGATTAGCCTT 59.819 40.000 0.00 0.00 0.00 4.35
3075 3216 8.617290 TTAGTTGAGTTACCAGGATTTCTTTC 57.383 34.615 0.00 0.00 0.00 2.62
3077 3218 4.000988 TGAGTTACCAGGATTTCTTTCGC 58.999 43.478 0.00 0.00 0.00 4.70
3104 3245 0.106167 AGGGTCAGCTATCCTGCGTA 60.106 55.000 6.36 0.00 41.50 4.42
3114 3255 4.106197 GCTATCCTGCGTATACTGCATAC 58.894 47.826 18.22 0.00 42.32 2.39
3152 3293 2.935955 GTGGCGTACACTGCACAC 59.064 61.111 5.33 0.00 46.72 3.82
3171 3312 0.673333 CTGTTCACGCATGCCAGGTA 60.673 55.000 13.15 0.00 0.00 3.08
3236 3377 5.497464 TTGTCATGATGTTAGAGGTGGAA 57.503 39.130 0.00 0.00 0.00 3.53
3309 3450 5.861251 CGAGCAATCATAGATGGAAGTAGTC 59.139 44.000 0.00 0.00 0.00 2.59
3324 3465 7.155328 TGGAAGTAGTCTTTTTCAGTCAGATC 58.845 38.462 0.00 0.00 33.64 2.75
3406 3548 6.670695 AGCAAAATTCTTATTCCACCTTGT 57.329 33.333 0.00 0.00 0.00 3.16
3413 3555 7.693969 ATTCTTATTCCACCTTGTTTCTCAG 57.306 36.000 0.00 0.00 0.00 3.35
3430 3572 0.250513 CAGTAGGGCCTCACAACCTC 59.749 60.000 10.74 0.00 35.84 3.85
3465 3607 3.842925 GACTGTTCAAGGGCGGGCA 62.843 63.158 3.27 0.00 0.00 5.36
3494 3636 1.686110 CCCCTCGGAGCTGTACCTT 60.686 63.158 0.00 0.00 0.00 3.50
3503 3656 1.804748 GAGCTGTACCTTTTCCCAACG 59.195 52.381 0.00 0.00 0.00 4.10
3600 3753 5.447757 TCATCATGATCTTTGTTGGGCATA 58.552 37.500 4.86 0.00 0.00 3.14
3697 3850 9.214953 GTTATGATTGATCAAGAAACGATGAAC 57.785 33.333 14.54 4.98 40.69 3.18
3733 3886 2.880890 AGTCTGTTTGTTCATGCTCACC 59.119 45.455 0.00 0.00 0.00 4.02
3738 3891 3.243468 TGTTTGTTCATGCTCACCACATG 60.243 43.478 0.00 0.00 45.08 3.21
3768 4438 2.579410 TACCAAGGGAAGCAAGAACC 57.421 50.000 0.00 0.00 0.00 3.62
3797 4467 6.618811 AGACTTCATGAAACATTGCAGAATC 58.381 36.000 9.88 0.00 0.00 2.52
3909 4579 0.175760 TAGGCCACGCATTGACTCTC 59.824 55.000 5.01 0.00 0.00 3.20
3923 4593 7.144000 GCATTGACTCTCTTCTTGTGAAATTT 58.856 34.615 0.00 0.00 0.00 1.82
4006 4681 6.231211 ACCGCTATTCCAAACTTATATGGAG 58.769 40.000 0.00 0.00 45.94 3.86
4055 4730 5.408880 TCTTTCACCATATTCCACACGTA 57.591 39.130 0.00 0.00 0.00 3.57
4090 4765 3.899052 ATGCTGGCGTAAACTAACCTA 57.101 42.857 0.00 0.00 0.00 3.08
4104 4779 7.569599 AAACTAACCTATTCTCCTCCTTCAA 57.430 36.000 0.00 0.00 0.00 2.69
4114 4789 9.936759 CTATTCTCCTCCTTCAACCTATTTATC 57.063 37.037 0.00 0.00 0.00 1.75
4229 4904 3.913548 TTGCAGCATGTTTTGTCGTAT 57.086 38.095 0.00 0.00 39.31 3.06
4373 5048 4.643784 CACGTACTAGAGGTGGGATACTTT 59.356 45.833 0.00 0.00 39.74 2.66
4510 5192 5.376625 TCTCTCTTCTCTCTCCAGCTAATC 58.623 45.833 0.00 0.00 0.00 1.75
4629 5429 7.710907 TGGTACATTCAGATAGTTGCTTACATC 59.289 37.037 0.00 0.00 0.00 3.06
4722 5522 7.783119 GGTATATTAATCTGTTTCCCCCTTTGT 59.217 37.037 0.00 0.00 0.00 2.83
4864 5665 9.897744 CAAATGTAAAAGCTAATCTGTTGAAGA 57.102 29.630 0.00 0.00 39.94 2.87
4883 5684 7.621428 TGAAGAAATCATCTCAAGGAACATC 57.379 36.000 0.00 0.00 37.42 3.06
4897 5698 5.144159 AGGAACATCCACATCTAGGAGTA 57.856 43.478 0.00 0.00 39.61 2.59
4945 5746 7.041984 GGAGTGAAATCGACAAGTTACTTCTTT 60.042 37.037 0.00 0.00 0.00 2.52
4970 5771 4.723309 GGAGATGCTGTCCAGGATAAAAT 58.277 43.478 0.98 0.00 39.68 1.82
4982 5783 7.282224 TGTCCAGGATAAAATAACCAATCTTCG 59.718 37.037 0.00 0.00 0.00 3.79
5112 5913 7.662897 ACATCCGAGATCTTCCTTTACTATTC 58.337 38.462 0.00 0.00 0.00 1.75
5396 6200 7.043656 GGTTGGAGAAAAACGTCAATACTTTTG 60.044 37.037 0.00 0.00 28.45 2.44
5397 6201 7.090953 TGGAGAAAAACGTCAATACTTTTGT 57.909 32.000 0.00 0.00 28.45 2.83
5398 6202 8.211116 TGGAGAAAAACGTCAATACTTTTGTA 57.789 30.769 0.00 0.00 39.50 2.41
5399 6203 8.124199 TGGAGAAAAACGTCAATACTTTTGTAC 58.876 33.333 0.00 0.00 37.78 2.90
5400 6204 8.124199 GGAGAAAAACGTCAATACTTTTGTACA 58.876 33.333 0.00 0.00 37.78 2.90
5401 6205 9.155053 GAGAAAAACGTCAATACTTTTGTACAG 57.845 33.333 0.00 0.00 37.78 2.74
5402 6206 8.671028 AGAAAAACGTCAATACTTTTGTACAGT 58.329 29.630 0.00 0.00 37.78 3.55
5540 6351 9.457436 TGTGTTTTATAAGATAGGAAAGGAACC 57.543 33.333 0.00 0.00 0.00 3.62
5621 6432 3.449746 AACCATAGGCCAGCTGTTTAA 57.550 42.857 13.81 0.00 0.00 1.52
5652 6466 3.758023 TGCACGACTTTGGATTCATGATT 59.242 39.130 0.00 0.00 0.00 2.57
5698 6512 1.340568 TGTTGTGGTGTCCATGCATTG 59.659 47.619 0.00 0.00 35.28 2.82
5732 6546 3.813166 TCTTTTCTTGTCCTTTAGGTGCG 59.187 43.478 0.00 0.00 36.34 5.34
5829 6643 0.179062 GACTAGCATGGCCTCTGTGG 60.179 60.000 3.32 0.00 39.35 4.17
5856 6671 5.830000 TGTATCAGATACAAGCGTGTACT 57.170 39.130 19.29 10.98 42.99 2.73
5867 6682 0.249489 GCGTGTACTGGGCTCCATAG 60.249 60.000 0.00 0.00 30.82 2.23
5894 6709 0.517316 GTGTGAGCCTTGGTTTAGCG 59.483 55.000 0.00 0.00 0.00 4.26
5938 6753 6.414987 GCACTGTTAGTTTCAAGTTGATTGTC 59.585 38.462 6.36 0.00 40.05 3.18
6238 7055 2.773661 TGTCCAGATGCCATGATACACT 59.226 45.455 0.00 0.00 0.00 3.55
6304 7127 4.706962 ACAAGATAATTTTGGGAGAGGTGC 59.293 41.667 0.00 0.00 0.00 5.01
6477 7304 0.318360 TACTGCTGTGTTGTCCGTCG 60.318 55.000 6.48 0.00 0.00 5.12
6697 7527 3.186047 CTGAACGGTAAGGCGGCG 61.186 66.667 0.51 0.51 0.00 6.46
6744 7574 0.464870 CTCAGGTGGAGCAGGATCAG 59.535 60.000 0.00 0.00 36.69 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 200 1.811558 CGGTGCCCATCTTCTGGTATG 60.812 57.143 0.00 0.00 44.30 2.39
299 307 4.298626 TGGAGCCAATAACTACCAGAGAT 58.701 43.478 0.00 0.00 0.00 2.75
521 531 9.409312 TGCATCATGTTTTCTTACTGTTATTTG 57.591 29.630 0.00 0.00 0.00 2.32
565 575 8.685863 AAGTGTACTTTAGTGGCGAAGCTGAT 62.686 42.308 0.00 0.00 44.10 2.90
566 576 7.469039 AAGTGTACTTTAGTGGCGAAGCTGA 62.469 44.000 0.00 0.00 44.10 4.26
567 577 5.328113 AAGTGTACTTTAGTGGCGAAGCTG 61.328 45.833 0.00 0.00 44.10 4.24
568 578 3.244112 AAGTGTACTTTAGTGGCGAAGCT 60.244 43.478 0.00 0.00 44.10 3.74
569 579 3.064931 AAGTGTACTTTAGTGGCGAAGC 58.935 45.455 0.00 0.00 43.96 3.86
570 580 4.748102 TCAAAGTGTACTTTAGTGGCGAAG 59.252 41.667 9.47 0.00 43.72 3.79
571 581 4.695396 TCAAAGTGTACTTTAGTGGCGAA 58.305 39.130 9.47 0.00 43.72 4.70
572 582 4.304110 CTCAAAGTGTACTTTAGTGGCGA 58.696 43.478 9.47 2.22 43.72 5.54
573 583 3.432252 CCTCAAAGTGTACTTTAGTGGCG 59.568 47.826 9.47 0.00 43.72 5.69
574 584 4.213482 CACCTCAAAGTGTACTTTAGTGGC 59.787 45.833 17.75 0.00 43.72 5.01
575 585 4.213482 GCACCTCAAAGTGTACTTTAGTGG 59.787 45.833 22.30 19.62 43.72 4.00
576 586 5.057149 AGCACCTCAAAGTGTACTTTAGTG 58.943 41.667 19.54 19.54 43.72 2.74
577 587 5.291905 AGCACCTCAAAGTGTACTTTAGT 57.708 39.130 9.47 5.68 43.72 2.24
578 588 5.758296 TGAAGCACCTCAAAGTGTACTTTAG 59.242 40.000 9.47 7.87 43.72 1.85
579 589 5.676552 TGAAGCACCTCAAAGTGTACTTTA 58.323 37.500 9.47 0.00 43.72 1.85
580 590 4.523083 TGAAGCACCTCAAAGTGTACTTT 58.477 39.130 4.25 4.25 46.23 2.66
581 591 4.130118 CTGAAGCACCTCAAAGTGTACTT 58.870 43.478 0.00 0.00 40.04 2.24
582 592 3.388024 TCTGAAGCACCTCAAAGTGTACT 59.612 43.478 0.00 0.00 40.04 2.73
583 593 3.728845 TCTGAAGCACCTCAAAGTGTAC 58.271 45.455 0.00 0.00 40.04 2.90
584 594 4.415881 TTCTGAAGCACCTCAAAGTGTA 57.584 40.909 0.00 0.00 40.04 2.90
585 595 3.281727 TTCTGAAGCACCTCAAAGTGT 57.718 42.857 0.00 0.00 40.04 3.55
586 596 4.637483 TTTTCTGAAGCACCTCAAAGTG 57.363 40.909 0.00 0.00 40.88 3.16
587 597 5.594926 CAATTTTCTGAAGCACCTCAAAGT 58.405 37.500 0.00 0.00 0.00 2.66
588 598 4.446719 GCAATTTTCTGAAGCACCTCAAAG 59.553 41.667 0.00 0.00 0.00 2.77
589 599 4.141981 TGCAATTTTCTGAAGCACCTCAAA 60.142 37.500 0.00 0.00 0.00 2.69
590 600 3.384146 TGCAATTTTCTGAAGCACCTCAA 59.616 39.130 0.00 0.00 0.00 3.02
591 601 2.957680 TGCAATTTTCTGAAGCACCTCA 59.042 40.909 0.00 0.00 0.00 3.86
592 602 3.648339 TGCAATTTTCTGAAGCACCTC 57.352 42.857 0.00 0.00 0.00 3.85
596 606 7.041916 CCATTTTTAGTGCAATTTTCTGAAGCA 60.042 33.333 0.00 0.00 0.00 3.91
597 607 7.293018 CCATTTTTAGTGCAATTTTCTGAAGC 58.707 34.615 0.00 0.00 0.00 3.86
598 608 7.293018 GCCATTTTTAGTGCAATTTTCTGAAG 58.707 34.615 0.00 0.00 0.00 3.02
599 609 6.204495 GGCCATTTTTAGTGCAATTTTCTGAA 59.796 34.615 0.00 0.00 0.00 3.02
600 610 5.700373 GGCCATTTTTAGTGCAATTTTCTGA 59.300 36.000 0.00 0.00 0.00 3.27
601 611 5.106594 GGGCCATTTTTAGTGCAATTTTCTG 60.107 40.000 4.39 0.00 0.00 3.02
602 612 5.003160 GGGCCATTTTTAGTGCAATTTTCT 58.997 37.500 4.39 0.00 0.00 2.52
603 613 4.759183 TGGGCCATTTTTAGTGCAATTTTC 59.241 37.500 0.00 0.00 0.00 2.29
604 614 4.723309 TGGGCCATTTTTAGTGCAATTTT 58.277 34.783 0.00 0.00 0.00 1.82
605 615 4.363991 TGGGCCATTTTTAGTGCAATTT 57.636 36.364 0.00 0.00 0.00 1.82
606 616 4.363991 TTGGGCCATTTTTAGTGCAATT 57.636 36.364 7.26 0.00 0.00 2.32
607 617 4.363991 TTTGGGCCATTTTTAGTGCAAT 57.636 36.364 7.26 0.00 0.00 3.56
608 618 3.845781 TTTGGGCCATTTTTAGTGCAA 57.154 38.095 7.26 0.00 0.00 4.08
609 619 3.845781 TTTTGGGCCATTTTTAGTGCA 57.154 38.095 7.26 0.00 0.00 4.57
610 620 3.879892 TGTTTTTGGGCCATTTTTAGTGC 59.120 39.130 7.26 0.00 0.00 4.40
611 621 5.363939 TCTGTTTTTGGGCCATTTTTAGTG 58.636 37.500 7.26 0.00 0.00 2.74
612 622 5.622346 TCTGTTTTTGGGCCATTTTTAGT 57.378 34.783 7.26 0.00 0.00 2.24
613 623 6.709846 TGAATCTGTTTTTGGGCCATTTTTAG 59.290 34.615 7.26 4.08 0.00 1.85
614 624 6.595682 TGAATCTGTTTTTGGGCCATTTTTA 58.404 32.000 7.26 0.00 0.00 1.52
615 625 5.444176 TGAATCTGTTTTTGGGCCATTTTT 58.556 33.333 7.26 0.00 0.00 1.94
616 626 5.046288 TGAATCTGTTTTTGGGCCATTTT 57.954 34.783 7.26 0.00 0.00 1.82
617 627 4.644498 CTGAATCTGTTTTTGGGCCATTT 58.356 39.130 7.26 0.00 0.00 2.32
618 628 3.557686 GCTGAATCTGTTTTTGGGCCATT 60.558 43.478 7.26 0.00 0.00 3.16
619 629 2.027837 GCTGAATCTGTTTTTGGGCCAT 60.028 45.455 7.26 0.00 0.00 4.40
620 630 1.344114 GCTGAATCTGTTTTTGGGCCA 59.656 47.619 0.00 0.00 0.00 5.36
621 631 1.620323 AGCTGAATCTGTTTTTGGGCC 59.380 47.619 0.00 0.00 0.00 5.80
622 632 3.243839 TGAAGCTGAATCTGTTTTTGGGC 60.244 43.478 0.00 0.00 0.00 5.36
623 633 4.589216 TGAAGCTGAATCTGTTTTTGGG 57.411 40.909 0.00 0.00 0.00 4.12
624 634 5.407387 CCAATGAAGCTGAATCTGTTTTTGG 59.593 40.000 6.05 6.05 0.00 3.28
625 635 5.987347 ACCAATGAAGCTGAATCTGTTTTTG 59.013 36.000 0.00 0.00 0.00 2.44
626 636 6.165700 ACCAATGAAGCTGAATCTGTTTTT 57.834 33.333 0.00 0.00 0.00 1.94
627 637 5.796424 ACCAATGAAGCTGAATCTGTTTT 57.204 34.783 0.00 0.00 0.00 2.43
628 638 6.899393 TTACCAATGAAGCTGAATCTGTTT 57.101 33.333 0.00 0.00 0.00 2.83
629 639 6.571150 GCTTTACCAATGAAGCTGAATCTGTT 60.571 38.462 0.00 0.00 42.66 3.16
630 640 5.105997 GCTTTACCAATGAAGCTGAATCTGT 60.106 40.000 0.00 0.00 42.66 3.41
631 641 5.338365 GCTTTACCAATGAAGCTGAATCTG 58.662 41.667 0.00 0.00 42.66 2.90
632 642 5.573337 GCTTTACCAATGAAGCTGAATCT 57.427 39.130 0.00 0.00 42.66 2.40
639 649 4.158394 TGGAATCAGCTTTACCAATGAAGC 59.842 41.667 0.07 0.07 45.51 3.86
640 650 5.902613 TGGAATCAGCTTTACCAATGAAG 57.097 39.130 0.00 0.00 0.00 3.02
641 651 6.662865 TTTGGAATCAGCTTTACCAATGAA 57.337 33.333 10.73 0.00 39.75 2.57
642 652 6.855763 ATTTGGAATCAGCTTTACCAATGA 57.144 33.333 10.73 0.94 39.75 2.57
643 653 6.698766 GCTATTTGGAATCAGCTTTACCAATG 59.301 38.462 10.73 7.10 39.75 2.82
644 654 6.608808 AGCTATTTGGAATCAGCTTTACCAAT 59.391 34.615 10.73 0.17 41.50 3.16
645 655 5.951747 AGCTATTTGGAATCAGCTTTACCAA 59.048 36.000 7.15 7.15 41.50 3.67
646 656 5.357878 CAGCTATTTGGAATCAGCTTTACCA 59.642 40.000 0.00 0.00 42.33 3.25
647 657 5.358160 ACAGCTATTTGGAATCAGCTTTACC 59.642 40.000 0.00 0.00 42.33 2.85
648 658 6.442513 ACAGCTATTTGGAATCAGCTTTAC 57.557 37.500 0.00 0.00 42.33 2.01
649 659 7.039784 ACAAACAGCTATTTGGAATCAGCTTTA 60.040 33.333 20.90 0.00 42.33 1.85
650 660 5.990120 AACAGCTATTTGGAATCAGCTTT 57.010 34.783 0.00 0.00 42.33 3.51
651 661 5.244626 ACAAACAGCTATTTGGAATCAGCTT 59.755 36.000 20.90 0.00 42.33 3.74
652 662 4.768968 ACAAACAGCTATTTGGAATCAGCT 59.231 37.500 20.90 0.00 45.01 4.24
653 663 5.064441 ACAAACAGCTATTTGGAATCAGC 57.936 39.130 20.90 0.00 42.74 4.26
654 664 6.306356 CGAAACAAACAGCTATTTGGAATCAG 59.694 38.462 20.90 8.78 42.74 2.90
655 665 6.148948 CGAAACAAACAGCTATTTGGAATCA 58.851 36.000 20.90 0.00 42.74 2.57
656 666 5.572896 CCGAAACAAACAGCTATTTGGAATC 59.427 40.000 20.90 13.87 42.74 2.52
657 667 5.242838 TCCGAAACAAACAGCTATTTGGAAT 59.757 36.000 20.90 6.98 42.74 3.01
658 668 4.580995 TCCGAAACAAACAGCTATTTGGAA 59.419 37.500 20.90 0.00 42.74 3.53
659 669 4.138290 TCCGAAACAAACAGCTATTTGGA 58.862 39.130 20.90 5.94 42.74 3.53
660 670 4.497473 TCCGAAACAAACAGCTATTTGG 57.503 40.909 20.90 3.55 42.74 3.28
661 671 6.381801 AGAATCCGAAACAAACAGCTATTTG 58.618 36.000 15.81 15.81 43.81 2.32
662 672 6.575162 AGAATCCGAAACAAACAGCTATTT 57.425 33.333 0.00 0.00 0.00 1.40
663 673 7.103641 TCTAGAATCCGAAACAAACAGCTATT 58.896 34.615 0.00 0.00 0.00 1.73
664 674 6.640518 TCTAGAATCCGAAACAAACAGCTAT 58.359 36.000 0.00 0.00 0.00 2.97
665 675 6.032956 TCTAGAATCCGAAACAAACAGCTA 57.967 37.500 0.00 0.00 0.00 3.32
666 676 4.894784 TCTAGAATCCGAAACAAACAGCT 58.105 39.130 0.00 0.00 0.00 4.24
667 677 5.803020 ATCTAGAATCCGAAACAAACAGC 57.197 39.130 0.00 0.00 0.00 4.40
668 678 6.455646 CCGAATCTAGAATCCGAAACAAACAG 60.456 42.308 11.68 0.00 0.00 3.16
669 679 5.350365 CCGAATCTAGAATCCGAAACAAACA 59.650 40.000 11.68 0.00 0.00 2.83
670 680 5.726963 GCCGAATCTAGAATCCGAAACAAAC 60.727 44.000 11.68 0.00 0.00 2.93
671 681 4.331717 GCCGAATCTAGAATCCGAAACAAA 59.668 41.667 11.68 0.00 0.00 2.83
672 682 3.869246 GCCGAATCTAGAATCCGAAACAA 59.131 43.478 11.68 0.00 0.00 2.83
673 683 3.132289 AGCCGAATCTAGAATCCGAAACA 59.868 43.478 11.68 0.00 0.00 2.83
674 684 3.718815 AGCCGAATCTAGAATCCGAAAC 58.281 45.455 11.68 3.66 0.00 2.78
675 685 4.142026 TGAAGCCGAATCTAGAATCCGAAA 60.142 41.667 11.68 0.00 0.00 3.46
676 686 3.383505 TGAAGCCGAATCTAGAATCCGAA 59.616 43.478 11.68 0.00 0.00 4.30
677 687 2.956333 TGAAGCCGAATCTAGAATCCGA 59.044 45.455 11.68 0.00 0.00 4.55
678 688 3.053455 GTGAAGCCGAATCTAGAATCCG 58.947 50.000 0.00 0.55 0.00 4.18
679 689 4.054671 CAGTGAAGCCGAATCTAGAATCC 58.945 47.826 0.00 0.00 0.00 3.01
680 690 4.054671 CCAGTGAAGCCGAATCTAGAATC 58.945 47.826 0.00 0.00 0.00 2.52
681 691 3.742640 GCCAGTGAAGCCGAATCTAGAAT 60.743 47.826 0.00 0.00 0.00 2.40
682 692 2.418746 GCCAGTGAAGCCGAATCTAGAA 60.419 50.000 0.00 0.00 0.00 2.10
683 693 1.137086 GCCAGTGAAGCCGAATCTAGA 59.863 52.381 0.00 0.00 0.00 2.43
684 694 1.134699 TGCCAGTGAAGCCGAATCTAG 60.135 52.381 0.00 0.00 0.00 2.43
685 695 0.901827 TGCCAGTGAAGCCGAATCTA 59.098 50.000 0.00 0.00 0.00 1.98
686 696 0.036732 TTGCCAGTGAAGCCGAATCT 59.963 50.000 0.00 0.00 0.00 2.40
687 697 0.881118 TTTGCCAGTGAAGCCGAATC 59.119 50.000 0.00 0.00 0.00 2.52
688 698 1.000274 GTTTTGCCAGTGAAGCCGAAT 60.000 47.619 0.00 0.00 0.00 3.34
689 699 0.383949 GTTTTGCCAGTGAAGCCGAA 59.616 50.000 0.00 0.00 0.00 4.30
690 700 0.465460 AGTTTTGCCAGTGAAGCCGA 60.465 50.000 0.00 0.00 0.00 5.54
691 701 0.318107 CAGTTTTGCCAGTGAAGCCG 60.318 55.000 0.00 0.00 0.00 5.52
692 702 1.032014 TCAGTTTTGCCAGTGAAGCC 58.968 50.000 0.00 0.00 0.00 4.35
693 703 2.869233 TTCAGTTTTGCCAGTGAAGC 57.131 45.000 0.00 0.00 32.21 3.86
694 704 4.543692 CAGATTCAGTTTTGCCAGTGAAG 58.456 43.478 0.00 0.00 39.07 3.02
695 705 3.318839 CCAGATTCAGTTTTGCCAGTGAA 59.681 43.478 0.00 1.58 39.81 3.18
696 706 2.886523 CCAGATTCAGTTTTGCCAGTGA 59.113 45.455 0.00 0.00 0.00 3.41
697 707 2.624838 ACCAGATTCAGTTTTGCCAGTG 59.375 45.455 0.00 0.00 0.00 3.66
698 708 2.887152 GACCAGATTCAGTTTTGCCAGT 59.113 45.455 0.00 0.00 0.00 4.00
699 709 3.152341 AGACCAGATTCAGTTTTGCCAG 58.848 45.455 0.00 0.00 0.00 4.85
700 710 3.149196 GAGACCAGATTCAGTTTTGCCA 58.851 45.455 0.00 0.00 0.00 4.92
701 711 3.149196 TGAGACCAGATTCAGTTTTGCC 58.851 45.455 0.00 0.00 0.00 4.52
702 712 4.067896 TCTGAGACCAGATTCAGTTTTGC 58.932 43.478 1.90 0.00 44.01 3.68
713 723 2.897326 TGTTTCGGATTCTGAGACCAGA 59.103 45.455 12.29 0.00 46.95 3.86
714 724 3.319137 TGTTTCGGATTCTGAGACCAG 57.681 47.619 12.29 0.00 41.74 4.00
715 725 3.762407 TTGTTTCGGATTCTGAGACCA 57.238 42.857 12.29 0.67 0.00 4.02
716 726 4.315803 TCTTTGTTTCGGATTCTGAGACC 58.684 43.478 12.29 0.00 0.00 3.85
717 727 4.390297 CCTCTTTGTTTCGGATTCTGAGAC 59.610 45.833 8.81 8.81 0.00 3.36
718 728 4.283467 TCCTCTTTGTTTCGGATTCTGAGA 59.717 41.667 0.00 0.00 0.00 3.27
719 729 4.390297 GTCCTCTTTGTTTCGGATTCTGAG 59.610 45.833 0.00 0.00 0.00 3.35
720 730 4.315803 GTCCTCTTTGTTTCGGATTCTGA 58.684 43.478 0.00 0.00 0.00 3.27
721 731 3.123621 CGTCCTCTTTGTTTCGGATTCTG 59.876 47.826 0.00 0.00 0.00 3.02
722 732 3.244112 ACGTCCTCTTTGTTTCGGATTCT 60.244 43.478 0.00 0.00 0.00 2.40
723 733 3.064931 ACGTCCTCTTTGTTTCGGATTC 58.935 45.455 0.00 0.00 0.00 2.52
724 734 3.121738 ACGTCCTCTTTGTTTCGGATT 57.878 42.857 0.00 0.00 0.00 3.01
725 735 2.833631 ACGTCCTCTTTGTTTCGGAT 57.166 45.000 0.00 0.00 0.00 4.18
726 736 2.607631 AACGTCCTCTTTGTTTCGGA 57.392 45.000 0.00 0.00 0.00 4.55
727 737 3.645884 TCTAACGTCCTCTTTGTTTCGG 58.354 45.455 0.00 0.00 0.00 4.30
728 738 4.296690 ACTCTAACGTCCTCTTTGTTTCG 58.703 43.478 0.00 0.00 0.00 3.46
729 739 6.257193 TGAAACTCTAACGTCCTCTTTGTTTC 59.743 38.462 15.09 15.09 40.28 2.78
730 740 6.110707 TGAAACTCTAACGTCCTCTTTGTTT 58.889 36.000 0.00 0.00 0.00 2.83
731 741 5.667466 TGAAACTCTAACGTCCTCTTTGTT 58.333 37.500 0.00 0.00 0.00 2.83
732 742 5.272283 TGAAACTCTAACGTCCTCTTTGT 57.728 39.130 0.00 0.00 0.00 2.83
733 743 5.348997 GGATGAAACTCTAACGTCCTCTTTG 59.651 44.000 0.00 0.00 36.94 2.77
734 744 5.246429 AGGATGAAACTCTAACGTCCTCTTT 59.754 40.000 0.00 0.00 43.80 2.52
735 745 4.773149 AGGATGAAACTCTAACGTCCTCTT 59.227 41.667 0.00 0.00 43.80 2.85
736 746 4.345854 AGGATGAAACTCTAACGTCCTCT 58.654 43.478 0.00 0.00 43.80 3.69
737 747 4.722361 AGGATGAAACTCTAACGTCCTC 57.278 45.455 0.00 0.00 43.80 3.71
739 749 4.159135 TGGTAGGATGAAACTCTAACGTCC 59.841 45.833 0.00 0.00 39.26 4.79
740 750 5.125097 TCTGGTAGGATGAAACTCTAACGTC 59.875 44.000 0.00 0.00 0.00 4.34
741 751 5.014858 TCTGGTAGGATGAAACTCTAACGT 58.985 41.667 0.00 0.00 0.00 3.99
742 752 5.578005 TCTGGTAGGATGAAACTCTAACG 57.422 43.478 0.00 0.00 0.00 3.18
743 753 9.886132 TTAATTCTGGTAGGATGAAACTCTAAC 57.114 33.333 0.00 0.00 0.00 2.34
755 765 9.053472 TGAACTTTATCCTTAATTCTGGTAGGA 57.947 33.333 0.00 0.00 40.82 2.94
760 770 9.722056 CGATTTGAACTTTATCCTTAATTCTGG 57.278 33.333 0.00 0.00 0.00 3.86
773 783 4.084223 GGCAACGAGTCGATTTGAACTTTA 60.084 41.667 21.50 0.00 0.00 1.85
795 807 4.599047 TTATCTTGTTTTGCCAAGGTGG 57.401 40.909 0.00 0.00 41.72 4.61
817 829 2.101640 ACCAACCAGCCAAGGATTTT 57.898 45.000 0.00 0.00 0.00 1.82
818 830 2.990740 TACCAACCAGCCAAGGATTT 57.009 45.000 0.00 0.00 0.00 2.17
819 831 2.990740 TTACCAACCAGCCAAGGATT 57.009 45.000 0.00 0.00 0.00 3.01
820 832 2.807676 CTTTACCAACCAGCCAAGGAT 58.192 47.619 0.00 0.00 0.00 3.24
822 834 0.603065 GCTTTACCAACCAGCCAAGG 59.397 55.000 0.00 0.00 0.00 3.61
847 860 8.873830 TCAAATTTCTCGCAAAATTTAACACAA 58.126 25.926 15.42 1.97 43.50 3.33
863 876 5.394553 GGATGGATGGTTGGTCAAATTTCTC 60.395 44.000 0.00 0.00 0.00 2.87
873 886 2.999185 ACTTTGGATGGATGGTTGGT 57.001 45.000 0.00 0.00 0.00 3.67
878 891 3.055891 GGTTTGGAACTTTGGATGGATGG 60.056 47.826 0.00 0.00 0.00 3.51
885 898 2.604139 GGGATGGTTTGGAACTTTGGA 58.396 47.619 0.00 0.00 0.00 3.53
886 899 1.623311 GGGGATGGTTTGGAACTTTGG 59.377 52.381 0.00 0.00 0.00 3.28
887 900 2.037121 GTGGGGATGGTTTGGAACTTTG 59.963 50.000 0.00 0.00 0.00 2.77
888 901 2.325484 GTGGGGATGGTTTGGAACTTT 58.675 47.619 0.00 0.00 0.00 2.66
889 902 1.482365 GGTGGGGATGGTTTGGAACTT 60.482 52.381 0.00 0.00 0.00 2.66
890 903 0.114364 GGTGGGGATGGTTTGGAACT 59.886 55.000 0.00 0.00 0.00 3.01
891 904 0.902984 GGGTGGGGATGGTTTGGAAC 60.903 60.000 0.00 0.00 0.00 3.62
892 905 1.467432 GGGTGGGGATGGTTTGGAA 59.533 57.895 0.00 0.00 0.00 3.53
961 984 1.450905 GTATGTCGCCGAAAGATACGC 59.549 52.381 0.00 0.00 0.00 4.42
1006 1034 1.278413 GGGTTTCTTAGCCTCGGTCTT 59.722 52.381 0.00 0.00 41.39 3.01
1167 1195 2.159043 CGCAGAAGAGCAAGAAGGGATA 60.159 50.000 0.00 0.00 0.00 2.59
1174 1202 0.668706 GAGCACGCAGAAGAGCAAGA 60.669 55.000 0.00 0.00 0.00 3.02
1175 1203 0.669932 AGAGCACGCAGAAGAGCAAG 60.670 55.000 0.00 0.00 0.00 4.01
1176 1204 0.250038 AAGAGCACGCAGAAGAGCAA 60.250 50.000 0.00 0.00 0.00 3.91
1177 1205 0.668706 GAAGAGCACGCAGAAGAGCA 60.669 55.000 0.00 0.00 0.00 4.26
1178 1206 0.389687 AGAAGAGCACGCAGAAGAGC 60.390 55.000 0.00 0.00 0.00 4.09
1179 1207 1.725706 CAAGAAGAGCACGCAGAAGAG 59.274 52.381 0.00 0.00 0.00 2.85
1180 1208 1.606480 CCAAGAAGAGCACGCAGAAGA 60.606 52.381 0.00 0.00 0.00 2.87
1181 1209 0.795085 CCAAGAAGAGCACGCAGAAG 59.205 55.000 0.00 0.00 0.00 2.85
1182 1210 1.230635 GCCAAGAAGAGCACGCAGAA 61.231 55.000 0.00 0.00 0.00 3.02
1183 1211 1.669115 GCCAAGAAGAGCACGCAGA 60.669 57.895 0.00 0.00 0.00 4.26
1186 1214 4.451652 GCGCCAAGAAGAGCACGC 62.452 66.667 0.00 0.00 39.49 5.34
1197 1225 1.555075 AGAGATCAAACCTAGCGCCAA 59.445 47.619 2.29 0.00 0.00 4.52
1198 1226 1.137086 GAGAGATCAAACCTAGCGCCA 59.863 52.381 2.29 0.00 0.00 5.69
1204 1232 6.715264 GGAAAACAAAGGAGAGATCAAACCTA 59.285 38.462 0.00 0.00 32.06 3.08
1210 1238 4.520492 GCAAGGAAAACAAAGGAGAGATCA 59.480 41.667 0.00 0.00 0.00 2.92
1310 1338 4.331968 CAAACACAGGGTAGGCATTTCTA 58.668 43.478 0.00 0.00 0.00 2.10
1320 1348 1.883275 CATTTCCGCAAACACAGGGTA 59.117 47.619 0.00 0.00 0.00 3.69
1324 1352 0.314935 AGGCATTTCCGCAAACACAG 59.685 50.000 0.00 0.00 40.77 3.66
1368 1396 4.681942 CGGAATTGTAGCATACTCTACAGC 59.318 45.833 4.18 0.00 46.50 4.40
1384 1412 1.522668 TCTCTTGCACACCGGAATTG 58.477 50.000 9.46 2.40 0.00 2.32
1385 1413 2.270352 TTCTCTTGCACACCGGAATT 57.730 45.000 9.46 0.00 0.00 2.17
1402 1430 4.814234 TGCATACATTATGACCCGTCTTTC 59.186 41.667 0.00 0.00 38.45 2.62
1551 1585 3.441222 TGGCATGCAAATGAGAACTAGTG 59.559 43.478 21.36 0.00 0.00 2.74
1556 1590 2.991190 CAACTGGCATGCAAATGAGAAC 59.009 45.455 21.36 0.00 0.00 3.01
1690 1815 4.883585 TGGTATGCTCAATCTTGATCCAAC 59.116 41.667 0.00 0.00 36.46 3.77
1692 1817 4.776435 TGGTATGCTCAATCTTGATCCA 57.224 40.909 0.00 0.00 36.46 3.41
1703 1828 6.294675 CCAAAGAAACTCATTTGGTATGCTCA 60.295 38.462 8.24 0.00 46.79 4.26
1746 1871 1.407025 GGTAACTACTGCAAGCTCCCC 60.407 57.143 0.00 0.00 37.60 4.81
1800 1925 9.989869 TTTTAAATACAATCGAACATCGCATAA 57.010 25.926 0.00 0.00 40.21 1.90
1845 1970 8.731605 TCAAATGTTGTTGACTGTTGTTTACTA 58.268 29.630 0.00 0.00 32.56 1.82
1914 2041 6.296026 AGCTAAGAAACAAATGTACCTGACA 58.704 36.000 0.00 0.00 43.97 3.58
1958 2086 7.595819 TCAATGGGGATAATCAAACCATTAC 57.404 36.000 6.89 0.00 46.92 1.89
1965 2093 8.703743 CCTACAATTTCAATGGGGATAATCAAA 58.296 33.333 0.00 0.00 0.00 2.69
2093 2221 7.114095 ACCAACTAACTGGAAAAGACTACAAA 58.886 34.615 0.00 0.00 38.96 2.83
2190 2322 4.845225 GGGGGAAAAGGGTAAAATTTACCA 59.155 41.667 29.45 0.00 38.55 3.25
2202 2334 3.263170 CCAATAAAACAGGGGGAAAAGGG 59.737 47.826 0.00 0.00 0.00 3.95
2242 2374 3.871485 CTTCCTCATTCCCTGAACTCTG 58.129 50.000 0.00 0.00 32.14 3.35
2243 2375 2.238395 GCTTCCTCATTCCCTGAACTCT 59.762 50.000 0.00 0.00 32.14 3.24
2253 2385 3.243501 TGTTGTTGCAAGCTTCCTCATTC 60.244 43.478 0.00 0.00 0.00 2.67
2326 2460 9.004231 GTGGTAGGATGGATTTTCCCTATATAT 57.996 37.037 0.00 0.00 35.03 0.86
2327 2461 7.404980 GGTGGTAGGATGGATTTTCCCTATATA 59.595 40.741 0.00 0.00 35.03 0.86
2328 2462 6.217693 GGTGGTAGGATGGATTTTCCCTATAT 59.782 42.308 0.00 0.00 35.03 0.86
2329 2463 5.550403 GGTGGTAGGATGGATTTTCCCTATA 59.450 44.000 0.00 0.00 35.03 1.31
2330 2464 4.354087 GGTGGTAGGATGGATTTTCCCTAT 59.646 45.833 0.00 0.00 35.03 2.57
2475 2609 5.421693 ACAAAAACTATGGGCTCATATGCAA 59.578 36.000 6.77 0.00 35.53 4.08
2554 2689 7.557875 ACTACTTTTTGGGTAGTATGTACCA 57.442 36.000 4.94 0.00 45.22 3.25
2598 2733 1.637553 ACATTTGTCCTGAGGGCTCAT 59.362 47.619 4.08 0.00 39.13 2.90
2599 2734 1.067295 ACATTTGTCCTGAGGGCTCA 58.933 50.000 4.08 0.00 38.06 4.26
2600 2735 2.206576 AACATTTGTCCTGAGGGCTC 57.793 50.000 4.08 0.00 0.00 4.70
2601 2736 2.519013 GAAACATTTGTCCTGAGGGCT 58.481 47.619 4.08 0.00 0.00 5.19
2602 2737 1.546029 GGAAACATTTGTCCTGAGGGC 59.454 52.381 0.00 0.00 0.00 5.19
2603 2738 3.160679 AGGAAACATTTGTCCTGAGGG 57.839 47.619 0.00 0.00 42.87 4.30
2604 2739 4.651778 TGTAGGAAACATTTGTCCTGAGG 58.348 43.478 0.35 0.00 44.25 3.86
2605 2740 5.335191 GCTTGTAGGAAACATTTGTCCTGAG 60.335 44.000 0.35 0.00 44.25 3.35
2606 2741 4.518970 GCTTGTAGGAAACATTTGTCCTGA 59.481 41.667 0.35 0.00 44.25 3.86
2609 2744 4.278419 ACTGCTTGTAGGAAACATTTGTCC 59.722 41.667 0.00 0.00 38.10 4.02
2678 2813 4.022935 ACACGTACATACTCTTGGTTTCGA 60.023 41.667 0.00 0.00 0.00 3.71
2680 2815 6.385033 ACTACACGTACATACTCTTGGTTTC 58.615 40.000 0.00 0.00 0.00 2.78
2686 2821 8.954950 ACTACATACTACACGTACATACTCTT 57.045 34.615 0.00 0.00 0.00 2.85
2758 2893 6.743575 AAGAGCATACTCAAAACATGGTAC 57.256 37.500 0.00 0.00 46.09 3.34
2962 3100 3.399305 AGGGAAAATCCATCCTACCATCC 59.601 47.826 0.00 0.00 38.64 3.51
2964 3102 9.764776 ATATATAGGGAAAATCCATCCTACCAT 57.235 33.333 0.00 0.00 38.64 3.55
2994 3132 9.899661 ACACAGCTTACCAAAATAGAACATATA 57.100 29.630 0.00 0.00 0.00 0.86
2995 3133 8.807948 ACACAGCTTACCAAAATAGAACATAT 57.192 30.769 0.00 0.00 0.00 1.78
2996 3134 8.630054 AACACAGCTTACCAAAATAGAACATA 57.370 30.769 0.00 0.00 0.00 2.29
2997 3135 7.524717 AACACAGCTTACCAAAATAGAACAT 57.475 32.000 0.00 0.00 0.00 2.71
2998 3136 6.952773 AACACAGCTTACCAAAATAGAACA 57.047 33.333 0.00 0.00 0.00 3.18
2999 3137 7.200455 ACAAACACAGCTTACCAAAATAGAAC 58.800 34.615 0.00 0.00 0.00 3.01
3051 3192 6.872020 CGAAAGAAATCCTGGTAACTCAACTA 59.128 38.462 0.00 0.00 37.61 2.24
3075 3216 4.381079 GGATAGCTGACCCTAATCTTAGCG 60.381 50.000 0.00 0.00 36.36 4.26
3077 3218 5.337169 GCAGGATAGCTGACCCTAATCTTAG 60.337 48.000 0.00 0.00 0.00 2.18
3104 3245 6.902974 TGGGATGAGGTATATGTATGCAGTAT 59.097 38.462 0.00 0.00 0.00 2.12
3114 3255 6.409704 CCACTGTTATGGGATGAGGTATATG 58.590 44.000 0.00 0.00 35.95 1.78
3152 3293 0.673333 TACCTGGCATGCGTGAACAG 60.673 55.000 18.77 18.77 33.96 3.16
3171 3312 1.211457 CTGTTGGCTGAGATTAGGGCT 59.789 52.381 0.00 0.00 0.00 5.19
3236 3377 5.057149 GTCGTTGAGGTATTGCCATCTTAT 58.943 41.667 0.00 0.00 40.61 1.73
3282 3423 4.285517 ACTTCCATCTATGATTGCTCGGAT 59.714 41.667 0.00 0.00 0.00 4.18
3309 3450 5.757320 AGCCGATATGATCTGACTGAAAAAG 59.243 40.000 0.00 0.00 0.00 2.27
3315 3456 8.296000 CCTTATATAGCCGATATGATCTGACTG 58.704 40.741 0.00 0.00 32.67 3.51
3324 3465 9.751542 CCTTTTAGTCCTTATATAGCCGATATG 57.248 37.037 0.00 0.00 32.67 1.78
3399 3541 2.427506 GCCCTACTGAGAAACAAGGTG 58.572 52.381 0.00 0.00 0.00 4.00
3404 3546 1.623811 GTGAGGCCCTACTGAGAAACA 59.376 52.381 0.00 0.00 0.00 2.83
3406 3548 2.024176 TGTGAGGCCCTACTGAGAAA 57.976 50.000 0.00 0.00 0.00 2.52
3413 3555 1.218316 CGAGGTTGTGAGGCCCTAC 59.782 63.158 0.00 0.00 0.00 3.18
3430 3572 4.021631 CAGCCACACAGCACAGCG 62.022 66.667 0.00 0.00 34.23 5.18
3469 3611 4.899239 GCTCCGAGGGGCGACATG 62.899 72.222 0.00 0.00 44.57 3.21
3477 3619 0.613777 AAAAGGTACAGCTCCGAGGG 59.386 55.000 0.00 0.00 0.00 4.30
3503 3656 7.970614 CAGCCTAATCATACAAAGAAAACTTCC 59.029 37.037 0.00 0.00 0.00 3.46
3575 3728 3.698040 GCCCAACAAAGATCATGATGAGT 59.302 43.478 14.30 3.10 0.00 3.41
3600 3753 6.758886 CGCTTTTTCTCCATACTTACAGATCT 59.241 38.462 0.00 0.00 0.00 2.75
3724 3877 1.170442 TCAAGCATGTGGTGAGCATG 58.830 50.000 0.00 0.00 44.62 4.06
3738 3891 2.446435 TCCCTTGGTAAAGCATCAAGC 58.554 47.619 0.00 0.00 46.19 4.01
3768 4438 5.645067 TGCAATGTTTCATGAAGTCTCCTAG 59.355 40.000 8.41 0.00 0.00 3.02
3797 4467 4.511826 GGTGGGAAGATTAGCGTATTCAAG 59.488 45.833 0.00 0.00 0.00 3.02
3909 4579 3.749665 TGGCCCAAATTTCACAAGAAG 57.250 42.857 0.00 0.00 34.71 2.85
3923 4593 1.054231 TGCAATGTCATTTTGGCCCA 58.946 45.000 0.00 0.00 0.00 5.36
3984 4659 8.088981 ACTACTCCATATAAGTTTGGAATAGCG 58.911 37.037 9.47 0.00 42.72 4.26
4055 4730 4.455606 GCCAGCATAAGGATCTAACAACT 58.544 43.478 0.00 0.00 0.00 3.16
4090 4765 8.337118 TGATAAATAGGTTGAAGGAGGAGAAT 57.663 34.615 0.00 0.00 0.00 2.40
4104 4779 6.906901 TGTTAACTCTCCCCTGATAAATAGGT 59.093 38.462 7.22 0.00 33.31 3.08
4114 4789 2.234908 CAGAGGTGTTAACTCTCCCCTG 59.765 54.545 18.96 14.60 43.15 4.45
4229 4904 6.463614 CCCATGGAAATTGTTAGGTTCACAAA 60.464 38.462 15.22 0.00 37.67 2.83
4510 5192 9.899661 AAGCTAGATATCCTAGTAGAGTACATG 57.100 37.037 0.00 0.00 45.26 3.21
4607 5407 8.209584 AGATGATGTAAGCAACTATCTGAATGT 58.790 33.333 0.00 0.00 31.97 2.71
4864 5665 5.573219 TGTGGATGTTCCTTGAGATGATTT 58.427 37.500 0.00 0.00 37.46 2.17
4883 5684 8.840321 CATAAAAACCAATACTCCTAGATGTGG 58.160 37.037 0.00 0.00 0.00 4.17
4897 5698 5.248020 TCCAATCACCAGCATAAAAACCAAT 59.752 36.000 0.00 0.00 0.00 3.16
4945 5746 2.580815 CTGGACAGCATCTCCGCA 59.419 61.111 0.00 0.00 0.00 5.69
4970 5771 5.471797 TCATTTTCTGTGCGAAGATTGGTTA 59.528 36.000 0.00 0.00 32.21 2.85
4982 5783 5.529060 CCTCTATACCCTTCATTTTCTGTGC 59.471 44.000 0.00 0.00 0.00 4.57
5112 5913 7.913674 AGCAAACTAGAGTAATGGAAGAAAG 57.086 36.000 0.00 0.00 0.00 2.62
5355 6159 8.592529 TTTCTCCAACCATTCATCATATCAAA 57.407 30.769 0.00 0.00 0.00 2.69
5356 6160 8.592529 TTTTCTCCAACCATTCATCATATCAA 57.407 30.769 0.00 0.00 0.00 2.57
5369 6173 5.127491 AGTATTGACGTTTTTCTCCAACCA 58.873 37.500 0.00 0.00 0.00 3.67
5422 6231 9.349713 ACATGTAGTTTGATAGAGGAAAAACAA 57.650 29.630 0.00 0.00 35.46 2.83
5621 6432 2.138320 CAAAGTCGTGCATCTGAGTGT 58.862 47.619 0.00 0.00 0.00 3.55
5652 6466 6.214191 TGCAACTCTTAACACCAAATTCAA 57.786 33.333 0.00 0.00 0.00 2.69
5660 6474 4.202010 ACAACACATGCAACTCTTAACACC 60.202 41.667 0.00 0.00 0.00 4.16
5698 6512 5.507482 GGACAAGAAAAGAACCAGTAAAGCC 60.507 44.000 0.00 0.00 0.00 4.35
5848 6662 0.249489 CTATGGAGCCCAGTACACGC 60.249 60.000 0.00 0.00 36.75 5.34
5856 6671 1.291033 ACTCTACCACTATGGAGCCCA 59.709 52.381 0.84 0.00 40.96 5.36
5867 6682 1.338200 CCAAGGCTCACACTCTACCAC 60.338 57.143 0.00 0.00 0.00 4.16
5894 6709 6.035843 CAGTGCATTAAAACACCATGATACC 58.964 40.000 0.00 0.00 37.51 2.73
5938 6753 3.606595 TGACTTCTCAAGAGCTCATGG 57.393 47.619 18.26 9.60 0.00 3.66
6084 6901 3.554934 TCTTTGCTACCATGGGCAATAG 58.445 45.455 23.70 21.34 45.82 1.73
6264 7087 1.189524 TGTGGGGGTACGTTGGAGAG 61.190 60.000 0.00 0.00 0.00 3.20
6265 7088 0.763604 TTGTGGGGGTACGTTGGAGA 60.764 55.000 0.00 0.00 0.00 3.71
6304 7127 0.176680 CCATGTCCCTTCCTCACTCG 59.823 60.000 0.00 0.00 0.00 4.18
6676 7503 0.179134 CCGCCTTACCGTTCAGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
6697 7527 3.006247 GAGATGGAAGAAACAGGAGCAC 58.994 50.000 0.00 0.00 0.00 4.40
6706 7536 5.233083 TGAGCTTCTTGAGATGGAAGAAA 57.767 39.130 6.85 0.00 40.74 2.52
6744 7574 1.376037 CTTGGCAGGAGGACCGAAC 60.376 63.158 0.00 0.00 41.83 3.95
6775 7605 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.