Multiple sequence alignment - TraesCS5D01G194400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G194400 chr5D 100.000 4277 0 0 1 4277 298283371 298279095 0.000000e+00 7899.0
1 TraesCS5D01G194400 chr5D 90.871 2892 179 49 650 3485 298463804 298460942 0.000000e+00 3799.0
2 TraesCS5D01G194400 chr5D 88.419 3048 221 68 661 3666 298142659 298145616 0.000000e+00 3552.0
3 TraesCS5D01G194400 chr5D 91.866 2090 124 15 1601 3656 307094055 307096132 0.000000e+00 2876.0
4 TraesCS5D01G194400 chr5D 86.997 969 80 23 649 1600 307093082 307094021 0.000000e+00 1050.0
5 TraesCS5D01G194400 chr5D 89.876 484 25 10 3245 3717 307344283 307344753 6.120000e-168 601.0
6 TraesCS5D01G194400 chr5D 89.441 483 24 11 3245 3717 307184097 307184562 6.160000e-163 584.0
7 TraesCS5D01G194400 chr5D 93.493 292 18 1 3718 4008 284116796 284116505 2.360000e-117 433.0
8 TraesCS5D01G194400 chr5D 94.048 84 5 0 4035 4118 307096439 307096522 1.250000e-25 128.0
9 TraesCS5D01G194400 chr5D 92.683 82 6 0 4035 4116 307344748 307344829 7.510000e-23 119.0
10 TraesCS5D01G194400 chr5D 100.000 45 0 0 938 982 298282376 298282332 2.740000e-12 84.2
11 TraesCS5D01G194400 chr5B 94.324 2907 119 23 832 3717 338959314 338962195 0.000000e+00 4412.0
12 TraesCS5D01G194400 chr5B 94.324 2907 119 23 832 3717 338964818 338967699 0.000000e+00 4412.0
13 TraesCS5D01G194400 chr5B 93.205 1928 83 20 1599 3485 339288069 339286149 0.000000e+00 2791.0
14 TraesCS5D01G194400 chr5B 90.947 1690 124 10 1601 3281 352383002 352384671 0.000000e+00 2246.0
15 TraesCS5D01G194400 chr5B 90.992 1543 106 16 1935 3466 339080295 339078775 0.000000e+00 2049.0
16 TraesCS5D01G194400 chr5B 91.318 956 55 15 650 1600 339289033 339288101 0.000000e+00 1280.0
17 TraesCS5D01G194400 chr5B 92.782 665 42 2 996 1654 339089743 339089079 0.000000e+00 957.0
18 TraesCS5D01G194400 chr5B 94.027 452 23 2 188 636 338950743 338951193 0.000000e+00 682.0
19 TraesCS5D01G194400 chr5B 87.267 322 20 14 823 1131 338957669 338957982 8.800000e-92 348.0
20 TraesCS5D01G194400 chr5B 94.667 150 8 0 665 814 338956266 338956415 2.570000e-57 233.0
21 TraesCS5D01G194400 chr5B 86.603 209 16 8 3467 3666 339078616 339078411 2.000000e-53 220.0
22 TraesCS5D01G194400 chr5B 93.939 132 8 0 4146 4277 338962585 338962716 2.610000e-47 200.0
23 TraesCS5D01G194400 chr5B 93.939 132 8 0 4146 4277 338968089 338968220 2.610000e-47 200.0
24 TraesCS5D01G194400 chr5B 94.737 114 6 0 4035 4148 338962190 338962303 1.220000e-40 178.0
25 TraesCS5D01G194400 chr5B 94.737 114 6 0 4035 4148 338967694 338967807 1.220000e-40 178.0
26 TraesCS5D01G194400 chr5B 92.105 76 3 3 582 654 339289133 339289058 2.100000e-18 104.0
27 TraesCS5D01G194400 chr5B 90.000 70 7 0 4208 4277 21385245 21385314 1.640000e-14 91.6
28 TraesCS5D01G194400 chr5B 100.000 40 0 0 938 977 352381035 352381074 1.650000e-09 75.0
29 TraesCS5D01G194400 chr5B 93.617 47 1 2 938 982 338957844 338957890 7.670000e-08 69.4
30 TraesCS5D01G194400 chr5A 93.501 2631 150 12 996 3612 400573491 400576114 0.000000e+00 3892.0
31 TraesCS5D01G194400 chr5A 90.118 1690 140 9 1601 3281 390243800 390242129 0.000000e+00 2170.0
32 TraesCS5D01G194400 chr5A 92.205 1347 52 16 2383 3717 400769942 400768637 0.000000e+00 1857.0
33 TraesCS5D01G194400 chr5A 94.611 965 38 5 647 1601 400777979 400777019 0.000000e+00 1482.0
34 TraesCS5D01G194400 chr5A 95.199 729 35 0 1667 2395 400773700 400772972 0.000000e+00 1153.0
35 TraesCS5D01G194400 chr5A 87.680 763 61 17 845 1600 390244570 390243834 0.000000e+00 857.0
36 TraesCS5D01G194400 chr5A 95.745 282 7 3 371 650 400778298 400778020 2.350000e-122 449.0
37 TraesCS5D01G194400 chr5A 90.535 243 17 4 4035 4277 400768642 400768406 2.480000e-82 316.0
38 TraesCS5D01G194400 chr5A 93.284 134 8 1 47 180 400778430 400778298 3.370000e-46 196.0
39 TraesCS5D01G194400 chr5A 91.000 100 8 1 460 559 400572815 400572913 2.680000e-27 134.0
40 TraesCS5D01G194400 chr5A 100.000 46 0 0 937 982 400777625 400777580 7.620000e-13 86.1
41 TraesCS5D01G194400 chr5A 97.778 45 1 0 833 877 400573386 400573430 1.280000e-10 78.7
42 TraesCS5D01G194400 chr5A 100.000 36 0 0 1 36 400778450 400778415 2.760000e-07 67.6
43 TraesCS5D01G194400 chr5A 91.111 45 4 0 416 460 390364574 390364530 1.280000e-05 62.1
44 TraesCS5D01G194400 chr2A 94.502 291 16 0 3718 4008 689530136 689530426 2.350000e-122 449.0
45 TraesCS5D01G194400 chr7D 93.603 297 18 1 3712 4008 432695204 432694909 3.930000e-120 442.0
46 TraesCS5D01G194400 chr7D 93.836 292 18 0 3717 4008 207910941 207910650 1.410000e-119 440.0
47 TraesCS5D01G194400 chr7D 93.220 295 20 0 3711 4005 617107475 617107769 6.570000e-118 435.0
48 TraesCS5D01G194400 chr1D 93.793 290 18 0 3719 4008 410600577 410600866 1.830000e-118 436.0
49 TraesCS5D01G194400 chr1D 93.220 295 19 1 3715 4008 377577481 377577775 2.360000e-117 433.0
50 TraesCS5D01G194400 chr4D 93.493 292 19 0 3717 4008 95811405 95811114 6.570000e-118 435.0
51 TraesCS5D01G194400 chr2D 92.929 297 21 0 3718 4014 127369887 127370183 2.360000e-117 433.0
52 TraesCS5D01G194400 chr2B 85.915 71 8 2 4208 4277 475630666 475630735 1.650000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G194400 chr5D 298279095 298283371 4276 True 3991.600000 7899 100.000000 1 4277 2 chr5D.!!$R3 4276
1 TraesCS5D01G194400 chr5D 298460942 298463804 2862 True 3799.000000 3799 90.871000 650 3485 1 chr5D.!!$R2 2835
2 TraesCS5D01G194400 chr5D 298142659 298145616 2957 False 3552.000000 3552 88.419000 661 3666 1 chr5D.!!$F1 3005
3 TraesCS5D01G194400 chr5D 307093082 307096522 3440 False 1351.333333 2876 90.970333 649 4118 3 chr5D.!!$F3 3469
4 TraesCS5D01G194400 chr5D 307344283 307344829 546 False 360.000000 601 91.279500 3245 4116 2 chr5D.!!$F4 871
5 TraesCS5D01G194400 chr5B 339286149 339289133 2984 True 1391.666667 2791 92.209333 582 3485 3 chr5B.!!$R3 2903
6 TraesCS5D01G194400 chr5B 352381035 352384671 3636 False 1160.500000 2246 95.473500 938 3281 2 chr5B.!!$F4 2343
7 TraesCS5D01G194400 chr5B 338956266 338968220 11954 False 1136.711111 4412 93.505667 665 4277 9 chr5B.!!$F3 3612
8 TraesCS5D01G194400 chr5B 339078411 339080295 1884 True 1134.500000 2049 88.797500 1935 3666 2 chr5B.!!$R2 1731
9 TraesCS5D01G194400 chr5B 339089079 339089743 664 True 957.000000 957 92.782000 996 1654 1 chr5B.!!$R1 658
10 TraesCS5D01G194400 chr5A 390242129 390244570 2441 True 1513.500000 2170 88.899000 845 3281 2 chr5A.!!$R2 2436
11 TraesCS5D01G194400 chr5A 400572815 400576114 3299 False 1368.233333 3892 94.093000 460 3612 3 chr5A.!!$F1 3152
12 TraesCS5D01G194400 chr5A 400768406 400778450 10044 True 700.837500 1857 95.197375 1 4277 8 chr5A.!!$R3 4276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.028770 CGACAAGAGGCTAGCGAGAG 59.971 60.0 9.00 0.00 0.00 3.20 F
216 217 0.033991 ACAAGAGGCTAGCGAGAGGA 60.034 55.0 9.00 0.00 0.00 3.71 F
336 337 0.038599 TAGGTACACGAGCTGGGTCA 59.961 55.0 0.00 0.00 37.09 4.02 F
690 869 0.039256 TGTTTCGAGGCTGCATTTGC 60.039 50.0 0.50 0.00 42.50 3.68 F
884 3966 0.094216 CTTGCTGATCTGAACACGCG 59.906 55.0 3.53 3.53 0.00 6.01 F
988 4072 0.108662 CGCTGCTCACTCCACACATA 60.109 55.0 0.00 0.00 0.00 2.29 F
1455 5896 0.594028 GCGTCATCATCGGCTTCGTA 60.594 55.0 0.00 0.00 35.06 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1124 4221 0.034896 GGTGTTCGAGCTGGAAGGAA 59.965 55.000 11.84 0.0 0.00 3.36 R
1232 4335 0.529992 GTAGGTGTACTGGATGCGGC 60.530 60.000 0.00 0.0 0.00 6.53 R
2330 15630 1.277842 TGTAATCGGCCAGCTTCTTGA 59.722 47.619 2.24 0.0 0.00 3.02 R
2583 18926 1.818363 CATCGACGTCCCCGAGAGA 60.818 63.158 10.58 0.0 39.55 3.10 R
2697 19040 3.311110 TTCTTGTCGAGCGGGCCT 61.311 61.111 0.84 0.0 0.00 5.19 R
3213 19556 2.516448 CCTGTTCTCCCAGGCGATA 58.484 57.895 0.00 0.0 45.19 2.92 R
3285 19628 0.970937 CTCAGAGTCCCGGCCTACAA 60.971 60.000 0.00 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 5.752036 AGATGTCAAATCTCACTCCTTCA 57.248 39.130 0.00 0.00 0.00 3.02
99 100 8.646004 TCTCACTCCTTCAGATTAATAAGATGG 58.354 37.037 12.09 12.09 0.00 3.51
159 160 4.384647 GCAGACCAGATGGAAAGGATTAGT 60.385 45.833 5.72 0.00 38.94 2.24
160 161 5.163301 GCAGACCAGATGGAAAGGATTAGTA 60.163 44.000 5.72 0.00 38.94 1.82
163 164 7.659390 CAGACCAGATGGAAAGGATTAGTAATC 59.341 40.741 13.60 13.60 38.94 1.75
196 197 4.760047 CGGTTCAGGCTGGGGACG 62.760 72.222 15.73 10.66 0.00 4.79
197 198 3.319198 GGTTCAGGCTGGGGACGA 61.319 66.667 15.73 0.00 0.00 4.20
198 199 2.047179 GTTCAGGCTGGGGACGAC 60.047 66.667 15.73 0.94 0.00 4.34
199 200 2.525629 TTCAGGCTGGGGACGACA 60.526 61.111 15.73 0.00 0.00 4.35
200 201 2.144078 TTCAGGCTGGGGACGACAA 61.144 57.895 15.73 0.00 0.00 3.18
201 202 2.046892 CAGGCTGGGGACGACAAG 60.047 66.667 6.61 0.00 0.00 3.16
202 203 2.203788 AGGCTGGGGACGACAAGA 60.204 61.111 0.00 0.00 0.00 3.02
203 204 2.266055 GGCTGGGGACGACAAGAG 59.734 66.667 0.00 0.00 0.00 2.85
204 205 2.266055 GCTGGGGACGACAAGAGG 59.734 66.667 0.00 0.00 0.00 3.69
205 206 2.266055 CTGGGGACGACAAGAGGC 59.734 66.667 0.00 0.00 0.00 4.70
206 207 2.203788 TGGGGACGACAAGAGGCT 60.204 61.111 0.00 0.00 0.00 4.58
207 208 0.970937 CTGGGGACGACAAGAGGCTA 60.971 60.000 0.00 0.00 0.00 3.93
208 209 0.970937 TGGGGACGACAAGAGGCTAG 60.971 60.000 0.00 0.00 0.00 3.42
209 210 1.142097 GGGACGACAAGAGGCTAGC 59.858 63.158 6.04 6.04 0.00 3.42
210 211 1.226717 GGACGACAAGAGGCTAGCG 60.227 63.158 9.00 0.00 0.00 4.26
211 212 1.654954 GGACGACAAGAGGCTAGCGA 61.655 60.000 9.00 0.00 0.00 4.93
212 213 0.248296 GACGACAAGAGGCTAGCGAG 60.248 60.000 9.00 0.00 0.00 5.03
213 214 0.677098 ACGACAAGAGGCTAGCGAGA 60.677 55.000 9.00 0.00 0.00 4.04
214 215 0.028770 CGACAAGAGGCTAGCGAGAG 59.971 60.000 9.00 0.00 0.00 3.20
215 216 0.383949 GACAAGAGGCTAGCGAGAGG 59.616 60.000 9.00 0.58 0.00 3.69
216 217 0.033991 ACAAGAGGCTAGCGAGAGGA 60.034 55.000 9.00 0.00 0.00 3.71
217 218 0.383949 CAAGAGGCTAGCGAGAGGAC 59.616 60.000 9.00 0.00 0.00 3.85
218 219 0.033991 AAGAGGCTAGCGAGAGGACA 60.034 55.000 9.00 0.00 0.00 4.02
219 220 0.184933 AGAGGCTAGCGAGAGGACAT 59.815 55.000 9.00 0.00 0.00 3.06
220 221 0.596082 GAGGCTAGCGAGAGGACATC 59.404 60.000 9.00 0.00 0.00 3.06
221 222 0.106469 AGGCTAGCGAGAGGACATCA 60.106 55.000 9.00 0.00 0.00 3.07
222 223 0.965439 GGCTAGCGAGAGGACATCAT 59.035 55.000 9.00 0.00 0.00 2.45
223 224 1.342819 GGCTAGCGAGAGGACATCATT 59.657 52.381 9.00 0.00 0.00 2.57
224 225 2.402305 GCTAGCGAGAGGACATCATTG 58.598 52.381 0.00 0.00 0.00 2.82
225 226 2.035193 GCTAGCGAGAGGACATCATTGA 59.965 50.000 0.00 0.00 0.00 2.57
226 227 2.886862 AGCGAGAGGACATCATTGAG 57.113 50.000 0.00 0.00 0.00 3.02
227 228 1.202510 AGCGAGAGGACATCATTGAGC 60.203 52.381 0.00 0.00 0.00 4.26
228 229 1.472201 GCGAGAGGACATCATTGAGCA 60.472 52.381 0.00 0.00 0.00 4.26
229 230 2.897436 CGAGAGGACATCATTGAGCAA 58.103 47.619 0.00 0.00 0.00 3.91
230 231 3.464907 CGAGAGGACATCATTGAGCAAT 58.535 45.455 0.00 0.00 0.00 3.56
231 232 3.493877 CGAGAGGACATCATTGAGCAATC 59.506 47.826 0.00 0.00 0.00 2.67
232 233 4.449131 GAGAGGACATCATTGAGCAATCA 58.551 43.478 0.00 0.00 0.00 2.57
233 234 4.452825 AGAGGACATCATTGAGCAATCAG 58.547 43.478 0.00 0.00 0.00 2.90
234 235 4.080469 AGAGGACATCATTGAGCAATCAGT 60.080 41.667 0.00 0.00 0.00 3.41
235 236 4.597004 AGGACATCATTGAGCAATCAGTT 58.403 39.130 0.00 0.00 0.00 3.16
236 237 5.014858 AGGACATCATTGAGCAATCAGTTT 58.985 37.500 0.00 0.00 0.00 2.66
237 238 5.479375 AGGACATCATTGAGCAATCAGTTTT 59.521 36.000 0.00 0.00 0.00 2.43
238 239 6.014840 AGGACATCATTGAGCAATCAGTTTTT 60.015 34.615 0.00 0.00 0.00 1.94
300 301 8.740123 TTTTAGAACTCACACCACTTTATTGA 57.260 30.769 0.00 0.00 0.00 2.57
301 302 8.918202 TTTAGAACTCACACCACTTTATTGAT 57.082 30.769 0.00 0.00 0.00 2.57
302 303 8.918202 TTAGAACTCACACCACTTTATTGATT 57.082 30.769 0.00 0.00 0.00 2.57
303 304 7.440523 AGAACTCACACCACTTTATTGATTC 57.559 36.000 0.00 0.00 0.00 2.52
304 305 5.862924 ACTCACACCACTTTATTGATTCG 57.137 39.130 0.00 0.00 0.00 3.34
305 306 5.305585 ACTCACACCACTTTATTGATTCGT 58.694 37.500 0.00 0.00 0.00 3.85
306 307 6.460781 ACTCACACCACTTTATTGATTCGTA 58.539 36.000 0.00 0.00 0.00 3.43
307 308 6.932400 ACTCACACCACTTTATTGATTCGTAA 59.068 34.615 0.00 0.00 0.00 3.18
308 309 7.095355 ACTCACACCACTTTATTGATTCGTAAC 60.095 37.037 0.00 0.00 0.00 2.50
309 310 6.706716 TCACACCACTTTATTGATTCGTAACA 59.293 34.615 0.00 0.00 0.00 2.41
310 311 7.226918 TCACACCACTTTATTGATTCGTAACAA 59.773 33.333 0.00 0.00 0.00 2.83
311 312 8.020819 CACACCACTTTATTGATTCGTAACAAT 58.979 33.333 3.24 3.24 39.53 2.71
312 313 8.020819 ACACCACTTTATTGATTCGTAACAATG 58.979 33.333 7.62 0.00 37.32 2.82
313 314 8.020819 CACCACTTTATTGATTCGTAACAATGT 58.979 33.333 7.62 0.00 37.32 2.71
314 315 8.573035 ACCACTTTATTGATTCGTAACAATGTT 58.427 29.630 3.43 3.43 37.32 2.71
315 316 9.061610 CCACTTTATTGATTCGTAACAATGTTC 57.938 33.333 0.22 0.00 37.32 3.18
316 317 9.605955 CACTTTATTGATTCGTAACAATGTTCA 57.394 29.630 0.22 0.00 37.32 3.18
321 322 7.915293 TTGATTCGTAACAATGTTCATAGGT 57.085 32.000 0.22 0.00 0.00 3.08
322 323 9.607988 ATTGATTCGTAACAATGTTCATAGGTA 57.392 29.630 0.22 0.00 35.75 3.08
323 324 8.415192 TGATTCGTAACAATGTTCATAGGTAC 57.585 34.615 0.22 0.00 0.00 3.34
324 325 8.035984 TGATTCGTAACAATGTTCATAGGTACA 58.964 33.333 0.22 0.00 0.00 2.90
325 326 7.585286 TTCGTAACAATGTTCATAGGTACAC 57.415 36.000 0.22 0.00 0.00 2.90
326 327 5.801444 TCGTAACAATGTTCATAGGTACACG 59.199 40.000 0.22 3.94 0.00 4.49
327 328 5.801444 CGTAACAATGTTCATAGGTACACGA 59.199 40.000 0.22 0.00 0.00 4.35
328 329 6.020916 CGTAACAATGTTCATAGGTACACGAG 60.021 42.308 0.22 0.00 0.00 4.18
329 330 4.181578 ACAATGTTCATAGGTACACGAGC 58.818 43.478 0.00 0.00 0.00 5.03
330 331 4.081642 ACAATGTTCATAGGTACACGAGCT 60.082 41.667 0.00 0.00 39.82 4.09
331 332 3.503827 TGTTCATAGGTACACGAGCTG 57.496 47.619 0.00 0.00 37.09 4.24
332 333 2.165641 TGTTCATAGGTACACGAGCTGG 59.834 50.000 0.00 0.00 37.09 4.85
333 334 1.399714 TCATAGGTACACGAGCTGGG 58.600 55.000 0.00 0.00 37.09 4.45
334 335 1.112113 CATAGGTACACGAGCTGGGT 58.888 55.000 0.00 0.00 37.09 4.51
335 336 1.067212 CATAGGTACACGAGCTGGGTC 59.933 57.143 0.00 0.00 37.09 4.46
336 337 0.038599 TAGGTACACGAGCTGGGTCA 59.961 55.000 0.00 0.00 37.09 4.02
337 338 0.614979 AGGTACACGAGCTGGGTCAT 60.615 55.000 0.00 0.00 33.53 3.06
338 339 0.460284 GGTACACGAGCTGGGTCATG 60.460 60.000 0.00 0.00 0.00 3.07
339 340 0.460284 GTACACGAGCTGGGTCATGG 60.460 60.000 0.00 0.00 0.00 3.66
340 341 1.613317 TACACGAGCTGGGTCATGGG 61.613 60.000 0.00 0.00 0.00 4.00
341 342 3.402681 ACGAGCTGGGTCATGGGG 61.403 66.667 0.00 0.00 0.00 4.96
342 343 3.083349 CGAGCTGGGTCATGGGGA 61.083 66.667 0.00 0.00 0.00 4.81
343 344 2.446848 CGAGCTGGGTCATGGGGAT 61.447 63.158 0.00 0.00 0.00 3.85
344 345 1.925888 GAGCTGGGTCATGGGGATT 59.074 57.895 0.00 0.00 0.00 3.01
345 346 0.259938 GAGCTGGGTCATGGGGATTT 59.740 55.000 0.00 0.00 0.00 2.17
346 347 0.259938 AGCTGGGTCATGGGGATTTC 59.740 55.000 0.00 0.00 0.00 2.17
347 348 0.756815 GCTGGGTCATGGGGATTTCC 60.757 60.000 0.00 0.00 0.00 3.13
361 362 3.925379 GGATTTCCCAACCAAACATGTC 58.075 45.455 0.00 0.00 34.14 3.06
362 363 3.578282 GGATTTCCCAACCAAACATGTCT 59.422 43.478 0.00 0.00 34.14 3.41
363 364 4.770010 GGATTTCCCAACCAAACATGTCTA 59.230 41.667 0.00 0.00 34.14 2.59
364 365 5.336451 GGATTTCCCAACCAAACATGTCTAC 60.336 44.000 0.00 0.00 34.14 2.59
365 366 3.149005 TCCCAACCAAACATGTCTACC 57.851 47.619 0.00 0.00 0.00 3.18
366 367 2.443632 TCCCAACCAAACATGTCTACCA 59.556 45.455 0.00 0.00 0.00 3.25
367 368 2.819608 CCCAACCAAACATGTCTACCAG 59.180 50.000 0.00 0.00 0.00 4.00
368 369 2.819608 CCAACCAAACATGTCTACCAGG 59.180 50.000 0.00 0.00 0.00 4.45
369 370 3.497763 CCAACCAAACATGTCTACCAGGA 60.498 47.826 0.00 0.00 0.00 3.86
387 388 5.116882 CCAGGACCTAAGTTACAAGCATAC 58.883 45.833 0.00 0.00 0.00 2.39
388 389 5.104900 CCAGGACCTAAGTTACAAGCATACT 60.105 44.000 0.00 0.00 0.00 2.12
389 390 6.407202 CAGGACCTAAGTTACAAGCATACTT 58.593 40.000 0.00 0.00 36.23 2.24
415 416 3.538591 AGATTTCATCAAGCAGCGATCA 58.461 40.909 0.00 0.00 0.00 2.92
451 454 1.168714 CTAAACTTCACCAGGGCTGC 58.831 55.000 0.00 0.00 0.00 5.25
525 528 3.806949 AGGCAGTTTGTTTCATCCCTA 57.193 42.857 0.00 0.00 0.00 3.53
530 533 3.191371 CAGTTTGTTTCATCCCTAGGTGC 59.809 47.826 8.29 0.00 0.00 5.01
689 868 2.030893 TCTTGTTTCGAGGCTGCATTTG 60.031 45.455 0.50 0.00 0.00 2.32
690 869 0.039256 TGTTTCGAGGCTGCATTTGC 60.039 50.000 0.50 0.00 42.50 3.68
791 971 8.781196 GCATGCATGATGATATATTTAGGGTAG 58.219 37.037 30.64 0.00 33.31 3.18
884 3966 0.094216 CTTGCTGATCTGAACACGCG 59.906 55.000 3.53 3.53 0.00 6.01
957 4041 2.173519 CAACAATGGCTTCCATGGTCT 58.826 47.619 12.58 0.00 46.54 3.85
975 4059 2.124819 CCATCCTCTTGCGCTGCT 60.125 61.111 9.73 0.00 0.00 4.24
979 4063 1.897225 ATCCTCTTGCGCTGCTCACT 61.897 55.000 9.73 0.00 0.00 3.41
981 4065 2.047844 TCTTGCGCTGCTCACTCC 60.048 61.111 9.73 0.00 0.00 3.85
982 4066 2.357881 CTTGCGCTGCTCACTCCA 60.358 61.111 9.73 0.00 0.00 3.86
984 4068 3.459148 TTGCGCTGCTCACTCCACA 62.459 57.895 9.73 0.00 0.00 4.17
985 4069 3.418068 GCGCTGCTCACTCCACAC 61.418 66.667 0.00 0.00 0.00 3.82
986 4070 2.029518 CGCTGCTCACTCCACACA 59.970 61.111 0.00 0.00 0.00 3.72
987 4071 1.375140 CGCTGCTCACTCCACACAT 60.375 57.895 0.00 0.00 0.00 3.21
988 4072 0.108662 CGCTGCTCACTCCACACATA 60.109 55.000 0.00 0.00 0.00 2.29
990 4074 2.636830 GCTGCTCACTCCACACATAAT 58.363 47.619 0.00 0.00 0.00 1.28
1228 4331 1.303236 TCCATGGTGGGCAAGAACG 60.303 57.895 12.58 0.00 38.32 3.95
1455 5896 0.594028 GCGTCATCATCGGCTTCGTA 60.594 55.000 0.00 0.00 35.06 3.43
1461 5902 1.460504 TCATCGGCTTCGTAGACACT 58.539 50.000 0.00 0.00 34.32 3.55
1704 9444 4.612412 TTCAAGTTCGCGGGCGGT 62.612 61.111 13.60 0.00 40.25 5.68
1848 9594 0.760567 TCTCCATGTCCATCGGAGGG 60.761 60.000 17.85 1.39 45.40 4.30
1939 9685 4.015406 TCATGTCGGGCGGCAACT 62.015 61.111 12.47 0.00 31.67 3.16
1950 9696 2.124860 GGCAACTACGGCCCGAAT 60.125 61.111 11.71 0.00 45.87 3.34
2158 15455 3.222354 GACCTGACGCCCGACAAGT 62.222 63.158 0.00 0.00 0.00 3.16
2583 18926 2.353803 GCGGAGAGTGGAGTACAACATT 60.354 50.000 0.00 0.00 0.00 2.71
3040 19383 2.079020 GACGGTGACCTTGGTGTCGA 62.079 60.000 0.00 0.00 38.11 4.20
3213 19556 3.319198 ACGTGGGACTTCGGCCAT 61.319 61.111 2.24 0.00 0.00 4.40
3285 19628 0.682209 GGGACAACTGATGCCATGCT 60.682 55.000 0.00 0.00 0.00 3.79
3296 19641 2.516930 CCATGCTTGTAGGCCGGG 60.517 66.667 2.18 0.00 0.00 5.73
3322 19667 2.495270 TGAGAGTGAGTCTGATTGCCTC 59.505 50.000 0.00 0.00 34.71 4.70
3368 19782 8.988064 TTGATACTTGAGAGTTGATCTGTAAC 57.012 34.615 0.00 0.00 38.84 2.50
3464 19884 4.842531 TTCTCCTGTCCAATTGCATCTA 57.157 40.909 0.00 0.00 0.00 1.98
3465 19885 4.142609 TCTCCTGTCCAATTGCATCTAC 57.857 45.455 0.00 0.00 0.00 2.59
3471 20054 5.065218 CCTGTCCAATTGCATCTACAGTAAC 59.935 44.000 0.00 0.00 34.02 2.50
3537 20143 1.589779 GTTTTAATCCGTAGACCCGCG 59.410 52.381 0.00 0.00 0.00 6.46
3656 20273 3.793797 TCATGGATGGTACTGTACGTG 57.206 47.619 11.52 0.84 0.00 4.49
3657 20274 3.093814 TCATGGATGGTACTGTACGTGT 58.906 45.455 11.52 0.58 0.00 4.49
3658 20275 4.271661 TCATGGATGGTACTGTACGTGTA 58.728 43.478 11.52 0.00 0.00 2.90
3659 20276 4.096833 TCATGGATGGTACTGTACGTGTAC 59.903 45.833 16.11 16.11 39.43 2.90
3660 20277 2.419673 TGGATGGTACTGTACGTGTACG 59.580 50.000 17.16 2.43 40.63 3.67
3716 20588 2.159099 ACATCATCTGCCGTCGTATTGT 60.159 45.455 0.00 0.00 0.00 2.71
3717 20589 1.921243 TCATCTGCCGTCGTATTGTG 58.079 50.000 0.00 0.00 0.00 3.33
3718 20590 0.930310 CATCTGCCGTCGTATTGTGG 59.070 55.000 0.00 0.00 0.00 4.17
3721 20593 3.199891 GCCGTCGTATTGTGGCCC 61.200 66.667 0.00 0.00 41.70 5.80
3722 20594 2.582436 CCGTCGTATTGTGGCCCT 59.418 61.111 0.00 0.00 0.00 5.19
3723 20595 1.813753 CCGTCGTATTGTGGCCCTG 60.814 63.158 0.00 0.00 0.00 4.45
3724 20596 1.079405 CGTCGTATTGTGGCCCTGT 60.079 57.895 0.00 0.00 0.00 4.00
3725 20597 0.672401 CGTCGTATTGTGGCCCTGTT 60.672 55.000 0.00 0.00 0.00 3.16
3726 20598 1.530323 GTCGTATTGTGGCCCTGTTT 58.470 50.000 0.00 0.00 0.00 2.83
3727 20599 1.199097 GTCGTATTGTGGCCCTGTTTG 59.801 52.381 0.00 0.00 0.00 2.93
3728 20600 0.525761 CGTATTGTGGCCCTGTTTGG 59.474 55.000 0.00 0.00 0.00 3.28
3729 20601 1.627864 GTATTGTGGCCCTGTTTGGT 58.372 50.000 0.00 0.00 0.00 3.67
3730 20602 1.967779 GTATTGTGGCCCTGTTTGGTT 59.032 47.619 0.00 0.00 0.00 3.67
3731 20603 1.047801 ATTGTGGCCCTGTTTGGTTC 58.952 50.000 0.00 0.00 0.00 3.62
3732 20604 1.388065 TTGTGGCCCTGTTTGGTTCG 61.388 55.000 0.00 0.00 0.00 3.95
3733 20605 2.203422 TGGCCCTGTTTGGTTCGG 60.203 61.111 0.00 0.00 0.00 4.30
3734 20606 3.680786 GGCCCTGTTTGGTTCGGC 61.681 66.667 0.00 0.00 38.96 5.54
3735 20607 2.597510 GCCCTGTTTGGTTCGGCT 60.598 61.111 0.00 0.00 36.65 5.52
3736 20608 2.919494 GCCCTGTTTGGTTCGGCTG 61.919 63.158 0.00 0.00 36.65 4.85
3737 20609 1.528309 CCCTGTTTGGTTCGGCTGT 60.528 57.895 0.00 0.00 0.00 4.40
3738 20610 1.654220 CCTGTTTGGTTCGGCTGTG 59.346 57.895 0.00 0.00 0.00 3.66
3739 20611 1.654220 CTGTTTGGTTCGGCTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
3740 20612 0.817634 CTGTTTGGTTCGGCTGTGGA 60.818 55.000 0.00 0.00 0.00 4.02
3741 20613 0.179004 TGTTTGGTTCGGCTGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
3742 20614 0.958822 GTTTGGTTCGGCTGTGGATT 59.041 50.000 0.00 0.00 0.00 3.01
3743 20615 1.339929 GTTTGGTTCGGCTGTGGATTT 59.660 47.619 0.00 0.00 0.00 2.17
3744 20616 1.243902 TTGGTTCGGCTGTGGATTTC 58.756 50.000 0.00 0.00 0.00 2.17
3745 20617 0.400213 TGGTTCGGCTGTGGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
3746 20618 1.626321 TGGTTCGGCTGTGGATTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
3747 20619 2.039216 TGGTTCGGCTGTGGATTTCTAA 59.961 45.455 0.00 0.00 0.00 2.10
3748 20620 3.078837 GGTTCGGCTGTGGATTTCTAAA 58.921 45.455 0.00 0.00 0.00 1.85
3749 20621 3.504520 GGTTCGGCTGTGGATTTCTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
3750 20622 4.379499 GGTTCGGCTGTGGATTTCTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
3751 20623 2.747446 TCGGCTGTGGATTTCTAAAAGC 59.253 45.455 0.00 0.00 0.00 3.51
3752 20624 2.487762 CGGCTGTGGATTTCTAAAAGCA 59.512 45.455 0.00 0.00 0.00 3.91
3753 20625 3.426695 CGGCTGTGGATTTCTAAAAGCAG 60.427 47.826 0.00 0.00 0.00 4.24
3754 20626 3.505836 GCTGTGGATTTCTAAAAGCAGC 58.494 45.455 0.00 0.00 40.66 5.25
3755 20627 3.192212 GCTGTGGATTTCTAAAAGCAGCT 59.808 43.478 0.00 0.00 43.08 4.24
3756 20628 4.730657 CTGTGGATTTCTAAAAGCAGCTG 58.269 43.478 10.11 10.11 0.00 4.24
3757 20629 4.144297 TGTGGATTTCTAAAAGCAGCTGT 58.856 39.130 16.64 0.00 0.00 4.40
3758 20630 5.312895 TGTGGATTTCTAAAAGCAGCTGTA 58.687 37.500 16.64 0.00 0.00 2.74
3759 20631 5.767665 TGTGGATTTCTAAAAGCAGCTGTAA 59.232 36.000 16.64 0.00 0.00 2.41
3760 20632 6.264292 TGTGGATTTCTAAAAGCAGCTGTAAA 59.736 34.615 16.64 5.54 0.00 2.01
3761 20633 7.145323 GTGGATTTCTAAAAGCAGCTGTAAAA 58.855 34.615 16.64 6.21 0.00 1.52
3762 20634 7.651704 GTGGATTTCTAAAAGCAGCTGTAAAAA 59.348 33.333 16.64 7.20 0.00 1.94
3786 20658 9.570488 AAAATTTGTTGTGGAAAATTTGATGTG 57.430 25.926 6.82 0.00 0.00 3.21
3787 20659 8.503458 AATTTGTTGTGGAAAATTTGATGTGA 57.497 26.923 0.00 0.00 0.00 3.58
3788 20660 7.912056 TTTGTTGTGGAAAATTTGATGTGAA 57.088 28.000 0.00 0.00 0.00 3.18
3789 20661 7.912056 TTGTTGTGGAAAATTTGATGTGAAA 57.088 28.000 0.00 0.00 0.00 2.69
3790 20662 7.912056 TGTTGTGGAAAATTTGATGTGAAAA 57.088 28.000 0.00 0.00 0.00 2.29
3791 20663 8.327941 TGTTGTGGAAAATTTGATGTGAAAAA 57.672 26.923 0.00 0.00 0.00 1.94
3792 20664 8.449397 TGTTGTGGAAAATTTGATGTGAAAAAG 58.551 29.630 0.00 0.00 0.00 2.27
3793 20665 8.663911 GTTGTGGAAAATTTGATGTGAAAAAGA 58.336 29.630 0.00 0.00 0.00 2.52
3794 20666 8.961294 TGTGGAAAATTTGATGTGAAAAAGAT 57.039 26.923 0.00 0.00 0.00 2.40
3795 20667 8.828644 TGTGGAAAATTTGATGTGAAAAAGATG 58.171 29.630 0.00 0.00 0.00 2.90
3796 20668 8.829612 GTGGAAAATTTGATGTGAAAAAGATGT 58.170 29.630 0.00 0.00 0.00 3.06
3797 20669 8.828644 TGGAAAATTTGATGTGAAAAAGATGTG 58.171 29.630 0.00 0.00 0.00 3.21
3798 20670 9.044150 GGAAAATTTGATGTGAAAAAGATGTGA 57.956 29.630 0.00 0.00 0.00 3.58
3800 20672 9.603921 AAAATTTGATGTGAAAAAGATGTGAGT 57.396 25.926 0.00 0.00 0.00 3.41
3801 20673 8.807667 AATTTGATGTGAAAAAGATGTGAGTC 57.192 30.769 0.00 0.00 0.00 3.36
3802 20674 6.940831 TTGATGTGAAAAAGATGTGAGTCA 57.059 33.333 0.00 0.00 0.00 3.41
3803 20675 7.514784 TTGATGTGAAAAAGATGTGAGTCAT 57.485 32.000 0.00 0.00 39.77 3.06
3804 20676 7.514784 TGATGTGAAAAAGATGTGAGTCATT 57.485 32.000 0.00 0.00 36.83 2.57
3805 20677 7.944061 TGATGTGAAAAAGATGTGAGTCATTT 58.056 30.769 0.00 0.00 36.83 2.32
3806 20678 7.863877 TGATGTGAAAAAGATGTGAGTCATTTG 59.136 33.333 0.00 0.00 36.83 2.32
3807 20679 6.506147 TGTGAAAAAGATGTGAGTCATTTGG 58.494 36.000 0.00 0.00 36.83 3.28
3808 20680 5.403466 GTGAAAAAGATGTGAGTCATTTGGC 59.597 40.000 0.00 0.00 36.83 4.52
3809 20681 5.068855 TGAAAAAGATGTGAGTCATTTGGCA 59.931 36.000 0.00 0.00 36.83 4.92
3810 20682 5.534207 AAAAGATGTGAGTCATTTGGCAA 57.466 34.783 0.00 0.00 36.83 4.52
3811 20683 5.534207 AAAGATGTGAGTCATTTGGCAAA 57.466 34.783 16.01 16.01 36.83 3.68
3812 20684 4.510038 AGATGTGAGTCATTTGGCAAAC 57.490 40.909 16.00 3.35 36.83 2.93
3813 20685 3.256631 AGATGTGAGTCATTTGGCAAACC 59.743 43.478 16.00 6.42 36.83 3.27
3814 20686 3.005684 GATGTGAGTCATTTGGCAAACCA 59.994 43.478 16.00 1.33 39.74 3.67
3815 20687 4.853332 GATGTGAGTCATTTGGCAAACCAG 60.853 45.833 16.00 8.58 41.40 4.00
3824 20696 1.825090 TGGCAAACCAGCTGATACAG 58.175 50.000 17.39 0.00 42.67 2.74
3840 20712 7.807687 CTGATACAGCTTTTTCAGATTTTGG 57.192 36.000 13.26 0.00 38.25 3.28
3841 20713 6.158598 TGATACAGCTTTTTCAGATTTTGGC 58.841 36.000 0.00 0.00 0.00 4.52
3842 20714 3.732212 ACAGCTTTTTCAGATTTTGGCC 58.268 40.909 0.00 0.00 0.00 5.36
3843 20715 3.069289 CAGCTTTTTCAGATTTTGGCCC 58.931 45.455 0.00 0.00 0.00 5.80
3844 20716 2.068519 GCTTTTTCAGATTTTGGCCCG 58.931 47.619 0.00 0.00 0.00 6.13
3845 20717 2.068519 CTTTTTCAGATTTTGGCCCGC 58.931 47.619 0.00 0.00 0.00 6.13
3846 20718 1.043816 TTTTCAGATTTTGGCCCGCA 58.956 45.000 0.00 0.00 0.00 5.69
3847 20719 0.602562 TTTCAGATTTTGGCCCGCAG 59.397 50.000 0.00 0.00 0.00 5.18
3848 20720 1.876497 TTCAGATTTTGGCCCGCAGC 61.876 55.000 0.00 0.00 42.60 5.25
3849 20721 3.443045 AGATTTTGGCCCGCAGCG 61.443 61.111 8.18 8.18 45.17 5.18
3862 20734 1.818850 CGCAGCGGAATCAGATTTTG 58.181 50.000 7.00 0.00 0.00 2.44
3863 20735 1.532505 CGCAGCGGAATCAGATTTTGG 60.533 52.381 7.00 0.00 0.00 3.28
3864 20736 1.745087 GCAGCGGAATCAGATTTTGGA 59.255 47.619 0.00 0.00 0.00 3.53
3865 20737 2.164219 GCAGCGGAATCAGATTTTGGAA 59.836 45.455 0.00 0.00 0.00 3.53
3866 20738 3.367292 GCAGCGGAATCAGATTTTGGAAA 60.367 43.478 0.00 0.00 0.00 3.13
3867 20739 4.418392 CAGCGGAATCAGATTTTGGAAAG 58.582 43.478 0.00 0.00 0.00 2.62
3868 20740 3.119352 AGCGGAATCAGATTTTGGAAAGC 60.119 43.478 0.00 0.00 0.00 3.51
3869 20741 3.774066 CGGAATCAGATTTTGGAAAGCC 58.226 45.455 0.00 0.00 0.00 4.35
3870 20742 3.429410 CGGAATCAGATTTTGGAAAGCCC 60.429 47.826 0.00 0.00 0.00 5.19
3871 20743 3.429410 GGAATCAGATTTTGGAAAGCCCG 60.429 47.826 0.00 0.00 37.93 6.13
3872 20744 2.286365 TCAGATTTTGGAAAGCCCGT 57.714 45.000 0.00 0.00 37.93 5.28
3873 20745 2.159382 TCAGATTTTGGAAAGCCCGTC 58.841 47.619 0.00 0.00 37.93 4.79
3874 20746 1.202348 CAGATTTTGGAAAGCCCGTCC 59.798 52.381 0.00 0.00 37.93 4.79
3875 20747 1.075536 AGATTTTGGAAAGCCCGTCCT 59.924 47.619 0.17 0.00 37.93 3.85
3876 20748 1.202348 GATTTTGGAAAGCCCGTCCTG 59.798 52.381 0.17 0.00 37.93 3.86
3877 20749 0.825840 TTTTGGAAAGCCCGTCCTGG 60.826 55.000 0.00 0.00 37.93 4.45
3886 20758 4.785453 CCGTCCTGGGCTGCTTCC 62.785 72.222 0.00 0.00 0.00 3.46
3890 20762 4.729918 CCTGGGCTGCTTCCGCTT 62.730 66.667 0.00 0.00 36.97 4.68
3891 20763 2.674380 CTGGGCTGCTTCCGCTTT 60.674 61.111 0.00 0.00 36.97 3.51
3892 20764 2.203480 TGGGCTGCTTCCGCTTTT 60.203 55.556 0.00 0.00 36.97 2.27
3893 20765 2.259511 GGGCTGCTTCCGCTTTTG 59.740 61.111 0.00 0.00 36.97 2.44
3894 20766 2.259511 GGCTGCTTCCGCTTTTGG 59.740 61.111 0.00 0.00 36.97 3.28
3895 20767 2.564721 GGCTGCTTCCGCTTTTGGT 61.565 57.895 0.00 0.00 36.97 3.67
3896 20768 1.363807 GCTGCTTCCGCTTTTGGTT 59.636 52.632 0.00 0.00 36.97 3.67
3897 20769 0.664466 GCTGCTTCCGCTTTTGGTTC 60.664 55.000 0.00 0.00 36.97 3.62
3898 20770 0.667993 CTGCTTCCGCTTTTGGTTCA 59.332 50.000 0.00 0.00 36.97 3.18
3899 20771 0.667993 TGCTTCCGCTTTTGGTTCAG 59.332 50.000 0.00 0.00 36.97 3.02
3900 20772 0.951558 GCTTCCGCTTTTGGTTCAGA 59.048 50.000 0.00 0.00 0.00 3.27
3901 20773 1.541588 GCTTCCGCTTTTGGTTCAGAT 59.458 47.619 0.00 0.00 0.00 2.90
3902 20774 2.029918 GCTTCCGCTTTTGGTTCAGATT 60.030 45.455 0.00 0.00 0.00 2.40
3903 20775 3.552890 GCTTCCGCTTTTGGTTCAGATTT 60.553 43.478 0.00 0.00 0.00 2.17
3904 20776 4.620982 CTTCCGCTTTTGGTTCAGATTTT 58.379 39.130 0.00 0.00 0.00 1.82
3905 20777 3.976169 TCCGCTTTTGGTTCAGATTTTG 58.024 40.909 0.00 0.00 0.00 2.44
3906 20778 3.059166 CCGCTTTTGGTTCAGATTTTGG 58.941 45.455 0.00 0.00 0.00 3.28
3907 20779 2.476241 CGCTTTTGGTTCAGATTTTGGC 59.524 45.455 0.00 0.00 0.00 4.52
3908 20780 3.465871 GCTTTTGGTTCAGATTTTGGCA 58.534 40.909 0.00 0.00 0.00 4.92
3909 20781 3.495753 GCTTTTGGTTCAGATTTTGGCAG 59.504 43.478 0.00 0.00 0.00 4.85
3910 20782 2.818130 TTGGTTCAGATTTTGGCAGC 57.182 45.000 0.00 0.00 0.00 5.25
3911 20783 0.597568 TGGTTCAGATTTTGGCAGCG 59.402 50.000 0.00 0.00 0.00 5.18
3912 20784 0.109132 GGTTCAGATTTTGGCAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
3913 20785 0.881118 GTTCAGATTTTGGCAGCGGA 59.119 50.000 0.00 0.00 0.00 5.54
3914 20786 1.474077 GTTCAGATTTTGGCAGCGGAT 59.526 47.619 0.00 0.00 0.00 4.18
3915 20787 1.838112 TCAGATTTTGGCAGCGGATT 58.162 45.000 0.00 0.00 0.00 3.01
3916 20788 2.170166 TCAGATTTTGGCAGCGGATTT 58.830 42.857 0.00 0.00 0.00 2.17
3917 20789 2.164219 TCAGATTTTGGCAGCGGATTTC 59.836 45.455 0.00 0.00 0.00 2.17
3918 20790 2.165030 CAGATTTTGGCAGCGGATTTCT 59.835 45.455 0.00 0.00 0.00 2.52
3919 20791 2.165030 AGATTTTGGCAGCGGATTTCTG 59.835 45.455 0.00 0.00 34.79 3.02
3920 20792 0.602562 TTTTGGCAGCGGATTTCTGG 59.397 50.000 0.00 0.00 32.41 3.86
3921 20793 0.251121 TTTGGCAGCGGATTTCTGGA 60.251 50.000 0.00 0.00 32.41 3.86
3922 20794 0.251121 TTGGCAGCGGATTTCTGGAA 60.251 50.000 0.00 0.00 32.41 3.53
3923 20795 0.034186 TGGCAGCGGATTTCTGGAAT 60.034 50.000 0.00 0.00 32.41 3.01
3924 20796 0.665298 GGCAGCGGATTTCTGGAATC 59.335 55.000 0.00 0.00 42.84 2.52
3925 20797 0.305922 GCAGCGGATTTCTGGAATCG 59.694 55.000 2.68 0.40 44.21 3.34
3926 20798 0.940126 CAGCGGATTTCTGGAATCGG 59.060 55.000 10.90 10.90 44.21 4.18
3927 20799 0.830648 AGCGGATTTCTGGAATCGGA 59.169 50.000 17.58 0.00 44.21 4.55
3928 20800 1.417890 AGCGGATTTCTGGAATCGGAT 59.582 47.619 17.58 10.19 44.21 4.18
3929 20801 2.158755 AGCGGATTTCTGGAATCGGATT 60.159 45.455 17.58 2.19 44.21 3.01
3930 20802 2.224314 GCGGATTTCTGGAATCGGATTC 59.776 50.000 20.01 20.01 44.21 2.52
3931 20803 3.733337 CGGATTTCTGGAATCGGATTCT 58.267 45.455 25.29 8.76 44.21 2.40
3932 20804 3.496130 CGGATTTCTGGAATCGGATTCTG 59.504 47.826 25.29 19.01 44.21 3.02
3933 20805 4.455606 GGATTTCTGGAATCGGATTCTGT 58.544 43.478 25.29 9.27 44.21 3.41
3934 20806 4.884164 GGATTTCTGGAATCGGATTCTGTT 59.116 41.667 25.29 8.96 44.21 3.16
3935 20807 5.220931 GGATTTCTGGAATCGGATTCTGTTG 60.221 44.000 25.29 14.88 44.21 3.33
3936 20808 3.266510 TCTGGAATCGGATTCTGTTGG 57.733 47.619 25.29 13.47 39.24 3.77
3937 20809 2.092968 TCTGGAATCGGATTCTGTTGGG 60.093 50.000 25.29 12.15 39.24 4.12
3938 20810 1.633432 TGGAATCGGATTCTGTTGGGT 59.367 47.619 25.29 0.00 39.24 4.51
3939 20811 2.041081 TGGAATCGGATTCTGTTGGGTT 59.959 45.455 25.29 0.00 39.24 4.11
3940 20812 2.683362 GGAATCGGATTCTGTTGGGTTC 59.317 50.000 25.29 6.43 39.24 3.62
3941 20813 2.024176 ATCGGATTCTGTTGGGTTCG 57.976 50.000 0.00 0.00 0.00 3.95
3942 20814 0.672401 TCGGATTCTGTTGGGTTCGC 60.672 55.000 0.00 0.00 0.00 4.70
3943 20815 1.644786 CGGATTCTGTTGGGTTCGCC 61.645 60.000 0.00 0.00 0.00 5.54
3953 20825 4.167597 GGTTCGCCCTTTGGTTCA 57.832 55.556 0.00 0.00 0.00 3.18
3954 20826 1.956802 GGTTCGCCCTTTGGTTCAG 59.043 57.895 0.00 0.00 0.00 3.02
3955 20827 0.536460 GGTTCGCCCTTTGGTTCAGA 60.536 55.000 0.00 0.00 0.00 3.27
3956 20828 1.534729 GTTCGCCCTTTGGTTCAGAT 58.465 50.000 0.00 0.00 0.00 2.90
3957 20829 1.886542 GTTCGCCCTTTGGTTCAGATT 59.113 47.619 0.00 0.00 0.00 2.40
3958 20830 1.821216 TCGCCCTTTGGTTCAGATTC 58.179 50.000 0.00 0.00 0.00 2.52
3959 20831 1.351017 TCGCCCTTTGGTTCAGATTCT 59.649 47.619 0.00 0.00 0.00 2.40
3960 20832 1.470098 CGCCCTTTGGTTCAGATTCTG 59.530 52.381 7.38 7.38 0.00 3.02
3961 20833 2.519013 GCCCTTTGGTTCAGATTCTGT 58.481 47.619 13.23 0.00 32.61 3.41
3962 20834 2.893489 GCCCTTTGGTTCAGATTCTGTT 59.107 45.455 13.23 0.00 32.61 3.16
3963 20835 3.305608 GCCCTTTGGTTCAGATTCTGTTG 60.306 47.826 13.23 0.00 32.61 3.33
3964 20836 3.305608 CCCTTTGGTTCAGATTCTGTTGC 60.306 47.826 13.23 5.24 32.61 4.17
3965 20837 3.558505 CTTTGGTTCAGATTCTGTTGCG 58.441 45.455 13.23 0.00 32.61 4.85
3966 20838 0.874390 TGGTTCAGATTCTGTTGCGC 59.126 50.000 13.23 0.00 32.61 6.09
3967 20839 0.179215 GGTTCAGATTCTGTTGCGCG 60.179 55.000 13.23 0.00 32.61 6.86
3968 20840 0.790207 GTTCAGATTCTGTTGCGCGA 59.210 50.000 12.10 0.00 32.61 5.87
3969 20841 0.790207 TTCAGATTCTGTTGCGCGAC 59.210 50.000 21.27 21.27 32.61 5.19
3970 20842 1.057822 CAGATTCTGTTGCGCGACG 59.942 57.895 22.38 16.56 0.00 5.12
3971 20843 2.094659 AGATTCTGTTGCGCGACGG 61.095 57.895 27.78 27.78 0.00 4.79
3972 20844 3.702334 GATTCTGTTGCGCGACGGC 62.702 63.158 28.65 13.47 0.00 5.68
3988 20860 3.390003 GGCGGAATCCGTCCATAAA 57.610 52.632 23.56 0.00 46.90 1.40
3989 20861 1.670791 GGCGGAATCCGTCCATAAAA 58.329 50.000 23.56 0.00 46.90 1.52
3990 20862 1.602377 GGCGGAATCCGTCCATAAAAG 59.398 52.381 23.56 0.00 46.90 2.27
3991 20863 4.202393 GGCGGAATCCGTCCATAAAAGC 62.202 54.545 23.56 1.64 46.90 3.51
3993 20865 3.971032 GGAATCCGTCCATAAAAGCTG 57.029 47.619 0.00 0.00 46.97 4.24
3994 20866 3.541632 GGAATCCGTCCATAAAAGCTGA 58.458 45.455 0.00 0.00 46.97 4.26
3995 20867 3.945285 GGAATCCGTCCATAAAAGCTGAA 59.055 43.478 0.00 0.00 46.97 3.02
3996 20868 4.201920 GGAATCCGTCCATAAAAGCTGAAC 60.202 45.833 0.00 0.00 46.97 3.18
3997 20869 2.706890 TCCGTCCATAAAAGCTGAACC 58.293 47.619 0.00 0.00 0.00 3.62
3998 20870 2.039216 TCCGTCCATAAAAGCTGAACCA 59.961 45.455 0.00 0.00 0.00 3.67
3999 20871 2.817258 CCGTCCATAAAAGCTGAACCAA 59.183 45.455 0.00 0.00 0.00 3.67
4000 20872 3.254657 CCGTCCATAAAAGCTGAACCAAA 59.745 43.478 0.00 0.00 0.00 3.28
4001 20873 4.226761 CGTCCATAAAAGCTGAACCAAAC 58.773 43.478 0.00 0.00 0.00 2.93
4002 20874 4.261405 CGTCCATAAAAGCTGAACCAAACA 60.261 41.667 0.00 0.00 0.00 2.83
4003 20875 5.222631 GTCCATAAAAGCTGAACCAAACAG 58.777 41.667 0.00 0.00 38.27 3.16
4004 20876 4.280677 TCCATAAAAGCTGAACCAAACAGG 59.719 41.667 0.00 0.00 45.67 4.00
4005 20877 4.559153 CATAAAAGCTGAACCAAACAGGG 58.441 43.478 0.00 0.00 43.89 4.45
4006 20878 0.752658 AAAGCTGAACCAAACAGGGC 59.247 50.000 0.00 0.00 43.89 5.19
4007 20879 1.115326 AAGCTGAACCAAACAGGGCC 61.115 55.000 0.00 0.00 43.89 5.80
4008 20880 1.832167 GCTGAACCAAACAGGGCCA 60.832 57.895 6.18 0.00 43.89 5.36
4009 20881 2.041153 CTGAACCAAACAGGGCCAC 58.959 57.895 6.18 0.00 43.89 5.01
4010 20882 0.754957 CTGAACCAAACAGGGCCACA 60.755 55.000 6.18 0.00 43.89 4.17
4011 20883 0.754957 TGAACCAAACAGGGCCACAG 60.755 55.000 6.18 0.00 43.89 3.66
4012 20884 1.457455 AACCAAACAGGGCCACAGG 60.457 57.895 6.18 2.32 43.89 4.00
4013 20885 1.943730 AACCAAACAGGGCCACAGGA 61.944 55.000 6.18 0.00 43.89 3.86
4014 20886 1.077265 CCAAACAGGGCCACAGGAT 59.923 57.895 6.18 0.00 0.00 3.24
4015 20887 0.331278 CCAAACAGGGCCACAGGATA 59.669 55.000 6.18 0.00 0.00 2.59
4016 20888 1.063717 CCAAACAGGGCCACAGGATAT 60.064 52.381 6.18 0.00 0.00 1.63
4017 20889 2.174639 CCAAACAGGGCCACAGGATATA 59.825 50.000 6.18 0.00 0.00 0.86
4018 20890 3.372566 CCAAACAGGGCCACAGGATATAA 60.373 47.826 6.18 0.00 0.00 0.98
4019 20891 3.864789 AACAGGGCCACAGGATATAAG 57.135 47.619 6.18 0.00 0.00 1.73
4020 20892 3.060479 ACAGGGCCACAGGATATAAGA 57.940 47.619 6.18 0.00 0.00 2.10
4021 20893 3.393687 ACAGGGCCACAGGATATAAGAA 58.606 45.455 6.18 0.00 0.00 2.52
4022 20894 3.785887 ACAGGGCCACAGGATATAAGAAA 59.214 43.478 6.18 0.00 0.00 2.52
4023 20895 4.416848 ACAGGGCCACAGGATATAAGAAAT 59.583 41.667 6.18 0.00 0.00 2.17
4024 20896 4.763793 CAGGGCCACAGGATATAAGAAATG 59.236 45.833 6.18 0.00 0.00 2.32
4025 20897 4.416848 AGGGCCACAGGATATAAGAAATGT 59.583 41.667 6.18 0.00 0.00 2.71
4026 20898 4.762251 GGGCCACAGGATATAAGAAATGTC 59.238 45.833 4.39 0.00 0.00 3.06
4027 20899 5.456763 GGGCCACAGGATATAAGAAATGTCT 60.457 44.000 4.39 0.00 34.72 3.41
4028 20900 6.239887 GGGCCACAGGATATAAGAAATGTCTA 60.240 42.308 4.39 0.00 32.16 2.59
4029 20901 7.224297 GGCCACAGGATATAAGAAATGTCTAA 58.776 38.462 0.00 0.00 32.16 2.10
4030 20902 7.173390 GGCCACAGGATATAAGAAATGTCTAAC 59.827 40.741 0.00 0.00 32.16 2.34
4031 20903 7.715249 GCCACAGGATATAAGAAATGTCTAACA 59.285 37.037 0.00 0.00 32.16 2.41
4032 20904 9.613428 CCACAGGATATAAGAAATGTCTAACAA 57.387 33.333 0.00 0.00 32.16 2.83
4062 20934 4.265904 TCGAGACAAATGCTACTTGGAA 57.734 40.909 0.00 0.00 0.00 3.53
4091 20963 6.151648 AGCAGATTTGAAAATAGCTAACAGCA 59.848 34.615 11.40 0.00 45.56 4.41
4182 21338 8.229253 TGGTACTGTATGTCGTATGTCTAAAT 57.771 34.615 0.00 0.00 0.00 1.40
4197 21353 5.345702 TGTCTAAATAGAACATTCGGGTCG 58.654 41.667 0.00 0.00 33.47 4.79
4205 21361 0.677731 ACATTCGGGTCGGTCGACTA 60.678 55.000 20.55 0.83 44.04 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.171877 GAGTGAGATTTGACATCTTAAATTCCT 57.828 33.333 0.00 0.00 0.00 3.36
55 56 8.401709 GGAGTGAGATTTGACATCTTAAATTCC 58.598 37.037 0.00 0.00 0.00 3.01
56 57 9.171877 AGGAGTGAGATTTGACATCTTAAATTC 57.828 33.333 0.00 0.00 0.00 2.17
57 58 9.525826 AAGGAGTGAGATTTGACATCTTAAATT 57.474 29.630 0.00 0.00 0.00 1.82
58 59 9.171877 GAAGGAGTGAGATTTGACATCTTAAAT 57.828 33.333 0.00 0.00 0.00 1.40
59 60 8.156820 TGAAGGAGTGAGATTTGACATCTTAAA 58.843 33.333 0.00 0.00 0.00 1.52
60 61 7.679783 TGAAGGAGTGAGATTTGACATCTTAA 58.320 34.615 0.00 0.00 0.00 1.85
61 62 7.179160 TCTGAAGGAGTGAGATTTGACATCTTA 59.821 37.037 0.00 0.00 0.00 2.10
128 129 1.211212 CCATCTGGTCTGCAGATCCAA 59.789 52.381 27.20 20.83 37.30 3.53
179 180 4.760047 CGTCCCCAGCCTGAACCG 62.760 72.222 0.00 0.00 0.00 4.44
180 181 3.319198 TCGTCCCCAGCCTGAACC 61.319 66.667 0.00 0.00 0.00 3.62
181 182 2.047179 GTCGTCCCCAGCCTGAAC 60.047 66.667 0.00 0.00 0.00 3.18
182 183 2.111999 CTTGTCGTCCCCAGCCTGAA 62.112 60.000 0.00 0.00 0.00 3.02
183 184 2.525629 TTGTCGTCCCCAGCCTGA 60.526 61.111 0.00 0.00 0.00 3.86
184 185 2.046892 CTTGTCGTCCCCAGCCTG 60.047 66.667 0.00 0.00 0.00 4.85
185 186 2.203788 TCTTGTCGTCCCCAGCCT 60.204 61.111 0.00 0.00 0.00 4.58
186 187 2.266055 CTCTTGTCGTCCCCAGCC 59.734 66.667 0.00 0.00 0.00 4.85
187 188 2.266055 CCTCTTGTCGTCCCCAGC 59.734 66.667 0.00 0.00 0.00 4.85
188 189 0.970937 TAGCCTCTTGTCGTCCCCAG 60.971 60.000 0.00 0.00 0.00 4.45
189 190 0.970937 CTAGCCTCTTGTCGTCCCCA 60.971 60.000 0.00 0.00 0.00 4.96
190 191 1.817209 CTAGCCTCTTGTCGTCCCC 59.183 63.158 0.00 0.00 0.00 4.81
191 192 1.142097 GCTAGCCTCTTGTCGTCCC 59.858 63.158 2.29 0.00 0.00 4.46
192 193 1.226717 CGCTAGCCTCTTGTCGTCC 60.227 63.158 9.66 0.00 0.00 4.79
193 194 0.248296 CTCGCTAGCCTCTTGTCGTC 60.248 60.000 9.66 0.00 0.00 4.20
194 195 0.677098 TCTCGCTAGCCTCTTGTCGT 60.677 55.000 9.66 0.00 0.00 4.34
195 196 0.028770 CTCTCGCTAGCCTCTTGTCG 59.971 60.000 9.66 0.00 0.00 4.35
196 197 0.383949 CCTCTCGCTAGCCTCTTGTC 59.616 60.000 9.66 0.00 0.00 3.18
197 198 0.033991 TCCTCTCGCTAGCCTCTTGT 60.034 55.000 9.66 0.00 0.00 3.16
198 199 0.383949 GTCCTCTCGCTAGCCTCTTG 59.616 60.000 9.66 0.00 0.00 3.02
199 200 0.033991 TGTCCTCTCGCTAGCCTCTT 60.034 55.000 9.66 0.00 0.00 2.85
200 201 0.184933 ATGTCCTCTCGCTAGCCTCT 59.815 55.000 9.66 0.00 0.00 3.69
201 202 0.596082 GATGTCCTCTCGCTAGCCTC 59.404 60.000 9.66 0.00 0.00 4.70
202 203 0.106469 TGATGTCCTCTCGCTAGCCT 60.106 55.000 9.66 0.00 0.00 4.58
203 204 0.965439 ATGATGTCCTCTCGCTAGCC 59.035 55.000 9.66 0.00 0.00 3.93
204 205 2.035193 TCAATGATGTCCTCTCGCTAGC 59.965 50.000 4.06 4.06 0.00 3.42
205 206 3.856638 GCTCAATGATGTCCTCTCGCTAG 60.857 52.174 0.00 0.00 0.00 3.42
206 207 2.035193 GCTCAATGATGTCCTCTCGCTA 59.965 50.000 0.00 0.00 0.00 4.26
207 208 1.202510 GCTCAATGATGTCCTCTCGCT 60.203 52.381 0.00 0.00 0.00 4.93
208 209 1.216122 GCTCAATGATGTCCTCTCGC 58.784 55.000 0.00 0.00 0.00 5.03
209 210 2.591571 TGCTCAATGATGTCCTCTCG 57.408 50.000 0.00 0.00 0.00 4.04
210 211 4.449131 TGATTGCTCAATGATGTCCTCTC 58.551 43.478 0.00 0.00 0.00 3.20
211 212 4.080469 ACTGATTGCTCAATGATGTCCTCT 60.080 41.667 0.00 0.00 0.00 3.69
212 213 4.197750 ACTGATTGCTCAATGATGTCCTC 58.802 43.478 0.00 0.00 0.00 3.71
213 214 4.232188 ACTGATTGCTCAATGATGTCCT 57.768 40.909 0.00 0.00 0.00 3.85
214 215 4.978083 AACTGATTGCTCAATGATGTCC 57.022 40.909 0.00 0.00 0.00 4.02
274 275 9.179909 TCAATAAAGTGGTGTGAGTTCTAAAAA 57.820 29.630 0.00 0.00 0.00 1.94
275 276 8.740123 TCAATAAAGTGGTGTGAGTTCTAAAA 57.260 30.769 0.00 0.00 0.00 1.52
276 277 8.918202 ATCAATAAAGTGGTGTGAGTTCTAAA 57.082 30.769 0.00 0.00 0.00 1.85
277 278 8.918202 AATCAATAAAGTGGTGTGAGTTCTAA 57.082 30.769 0.00 0.00 0.00 2.10
278 279 7.330946 CGAATCAATAAAGTGGTGTGAGTTCTA 59.669 37.037 0.00 0.00 0.00 2.10
279 280 6.147821 CGAATCAATAAAGTGGTGTGAGTTCT 59.852 38.462 0.00 0.00 0.00 3.01
280 281 6.073222 ACGAATCAATAAAGTGGTGTGAGTTC 60.073 38.462 0.00 0.00 0.00 3.01
281 282 5.763204 ACGAATCAATAAAGTGGTGTGAGTT 59.237 36.000 0.00 0.00 0.00 3.01
282 283 5.305585 ACGAATCAATAAAGTGGTGTGAGT 58.694 37.500 0.00 0.00 0.00 3.41
283 284 5.862924 ACGAATCAATAAAGTGGTGTGAG 57.137 39.130 0.00 0.00 0.00 3.51
284 285 6.706716 TGTTACGAATCAATAAAGTGGTGTGA 59.293 34.615 0.00 0.00 0.00 3.58
285 286 6.893759 TGTTACGAATCAATAAAGTGGTGTG 58.106 36.000 0.00 0.00 0.00 3.82
286 287 7.499321 TTGTTACGAATCAATAAAGTGGTGT 57.501 32.000 0.00 0.00 0.00 4.16
287 288 8.020819 ACATTGTTACGAATCAATAAAGTGGTG 58.979 33.333 0.00 0.00 33.69 4.17
288 289 8.106247 ACATTGTTACGAATCAATAAAGTGGT 57.894 30.769 0.00 0.00 33.69 4.16
289 290 8.964420 AACATTGTTACGAATCAATAAAGTGG 57.036 30.769 0.00 0.00 33.69 4.00
290 291 9.605955 TGAACATTGTTACGAATCAATAAAGTG 57.394 29.630 1.15 0.00 33.69 3.16
295 296 9.607988 ACCTATGAACATTGTTACGAATCAATA 57.392 29.630 1.15 0.00 33.69 1.90
296 297 8.506168 ACCTATGAACATTGTTACGAATCAAT 57.494 30.769 1.15 0.00 35.08 2.57
297 298 7.915293 ACCTATGAACATTGTTACGAATCAA 57.085 32.000 1.15 0.00 0.00 2.57
298 299 8.035984 TGTACCTATGAACATTGTTACGAATCA 58.964 33.333 1.15 0.00 0.00 2.57
299 300 8.325997 GTGTACCTATGAACATTGTTACGAATC 58.674 37.037 1.15 0.00 0.00 2.52
300 301 7.009815 CGTGTACCTATGAACATTGTTACGAAT 59.990 37.037 1.15 0.00 0.00 3.34
301 302 6.308524 CGTGTACCTATGAACATTGTTACGAA 59.691 38.462 1.15 0.00 0.00 3.85
302 303 5.801444 CGTGTACCTATGAACATTGTTACGA 59.199 40.000 1.15 0.00 0.00 3.43
303 304 5.801444 TCGTGTACCTATGAACATTGTTACG 59.199 40.000 1.15 5.78 0.00 3.18
304 305 6.237755 GCTCGTGTACCTATGAACATTGTTAC 60.238 42.308 1.15 0.00 0.00 2.50
305 306 5.808540 GCTCGTGTACCTATGAACATTGTTA 59.191 40.000 1.15 0.00 0.00 2.41
306 307 4.630069 GCTCGTGTACCTATGAACATTGTT 59.370 41.667 0.63 0.63 0.00 2.83
307 308 4.081642 AGCTCGTGTACCTATGAACATTGT 60.082 41.667 0.00 0.00 0.00 2.71
308 309 4.268644 CAGCTCGTGTACCTATGAACATTG 59.731 45.833 0.00 0.00 0.00 2.82
309 310 4.433615 CAGCTCGTGTACCTATGAACATT 58.566 43.478 0.00 0.00 0.00 2.71
310 311 3.181475 CCAGCTCGTGTACCTATGAACAT 60.181 47.826 0.00 0.00 0.00 2.71
311 312 2.165641 CCAGCTCGTGTACCTATGAACA 59.834 50.000 0.00 0.00 0.00 3.18
312 313 2.481449 CCCAGCTCGTGTACCTATGAAC 60.481 54.545 0.00 0.00 0.00 3.18
313 314 1.754803 CCCAGCTCGTGTACCTATGAA 59.245 52.381 0.00 0.00 0.00 2.57
314 315 1.341679 ACCCAGCTCGTGTACCTATGA 60.342 52.381 0.00 0.00 0.00 2.15
315 316 1.067212 GACCCAGCTCGTGTACCTATG 59.933 57.143 0.00 0.00 0.00 2.23
316 317 1.341679 TGACCCAGCTCGTGTACCTAT 60.342 52.381 0.00 0.00 0.00 2.57
317 318 0.038599 TGACCCAGCTCGTGTACCTA 59.961 55.000 0.00 0.00 0.00 3.08
318 319 0.614979 ATGACCCAGCTCGTGTACCT 60.615 55.000 0.00 0.00 0.00 3.08
319 320 0.460284 CATGACCCAGCTCGTGTACC 60.460 60.000 0.00 0.00 0.00 3.34
320 321 0.460284 CCATGACCCAGCTCGTGTAC 60.460 60.000 0.00 0.00 0.00 2.90
321 322 1.613317 CCCATGACCCAGCTCGTGTA 61.613 60.000 0.00 0.00 0.00 2.90
322 323 2.665000 CCATGACCCAGCTCGTGT 59.335 61.111 0.00 0.00 0.00 4.49
323 324 2.124983 CCCATGACCCAGCTCGTG 60.125 66.667 0.00 0.00 0.00 4.35
324 325 3.402681 CCCCATGACCCAGCTCGT 61.403 66.667 0.00 0.00 0.00 4.18
325 326 1.987807 AATCCCCATGACCCAGCTCG 61.988 60.000 0.00 0.00 0.00 5.03
326 327 0.259938 AAATCCCCATGACCCAGCTC 59.740 55.000 0.00 0.00 0.00 4.09
327 328 0.259938 GAAATCCCCATGACCCAGCT 59.740 55.000 0.00 0.00 0.00 4.24
328 329 0.756815 GGAAATCCCCATGACCCAGC 60.757 60.000 0.00 0.00 0.00 4.85
329 330 3.520623 GGAAATCCCCATGACCCAG 57.479 57.895 0.00 0.00 0.00 4.45
340 341 3.578282 AGACATGTTTGGTTGGGAAATCC 59.422 43.478 0.00 0.00 0.00 3.01
341 342 4.871933 AGACATGTTTGGTTGGGAAATC 57.128 40.909 0.00 0.00 0.00 2.17
342 343 4.526650 GGTAGACATGTTTGGTTGGGAAAT 59.473 41.667 0.00 0.00 0.00 2.17
343 344 3.892588 GGTAGACATGTTTGGTTGGGAAA 59.107 43.478 0.00 0.00 0.00 3.13
344 345 3.117474 TGGTAGACATGTTTGGTTGGGAA 60.117 43.478 0.00 0.00 0.00 3.97
345 346 2.443632 TGGTAGACATGTTTGGTTGGGA 59.556 45.455 0.00 0.00 0.00 4.37
346 347 2.819608 CTGGTAGACATGTTTGGTTGGG 59.180 50.000 0.00 0.00 0.00 4.12
347 348 2.819608 CCTGGTAGACATGTTTGGTTGG 59.180 50.000 0.00 0.00 0.00 3.77
348 349 3.502211 GTCCTGGTAGACATGTTTGGTTG 59.498 47.826 0.00 0.00 36.73 3.77
349 350 3.497942 GGTCCTGGTAGACATGTTTGGTT 60.498 47.826 0.00 0.00 38.59 3.67
350 351 2.039879 GGTCCTGGTAGACATGTTTGGT 59.960 50.000 0.00 0.00 38.59 3.67
351 352 2.305927 AGGTCCTGGTAGACATGTTTGG 59.694 50.000 0.00 0.00 38.59 3.28
352 353 3.703001 AGGTCCTGGTAGACATGTTTG 57.297 47.619 0.00 0.00 38.59 2.93
353 354 4.844655 ACTTAGGTCCTGGTAGACATGTTT 59.155 41.667 0.00 0.00 38.59 2.83
354 355 4.426704 ACTTAGGTCCTGGTAGACATGTT 58.573 43.478 0.00 0.00 38.59 2.71
355 356 4.062490 ACTTAGGTCCTGGTAGACATGT 57.938 45.455 0.00 0.00 38.59 3.21
356 357 5.421056 TGTAACTTAGGTCCTGGTAGACATG 59.579 44.000 0.00 0.00 38.59 3.21
357 358 5.586877 TGTAACTTAGGTCCTGGTAGACAT 58.413 41.667 0.00 0.00 38.59 3.06
358 359 5.001833 TGTAACTTAGGTCCTGGTAGACA 57.998 43.478 0.00 6.12 38.59 3.41
359 360 5.624052 GCTTGTAACTTAGGTCCTGGTAGAC 60.624 48.000 0.00 3.82 35.95 2.59
360 361 4.465305 GCTTGTAACTTAGGTCCTGGTAGA 59.535 45.833 0.00 0.00 0.00 2.59
361 362 4.222145 TGCTTGTAACTTAGGTCCTGGTAG 59.778 45.833 0.00 0.00 0.00 3.18
362 363 4.161876 TGCTTGTAACTTAGGTCCTGGTA 58.838 43.478 0.00 0.00 0.00 3.25
363 364 2.976882 TGCTTGTAACTTAGGTCCTGGT 59.023 45.455 0.00 0.00 0.00 4.00
364 365 3.695830 TGCTTGTAACTTAGGTCCTGG 57.304 47.619 0.00 0.00 0.00 4.45
365 366 5.978814 AGTATGCTTGTAACTTAGGTCCTG 58.021 41.667 0.00 0.00 0.00 3.86
366 367 6.407202 CAAGTATGCTTGTAACTTAGGTCCT 58.593 40.000 14.75 0.00 45.18 3.85
367 368 6.663944 CAAGTATGCTTGTAACTTAGGTCC 57.336 41.667 14.75 0.00 45.18 4.46
387 388 4.857588 GCTGCTTGATGAAATCTTGTCAAG 59.142 41.667 6.21 6.21 45.81 3.02
388 389 4.614306 CGCTGCTTGATGAAATCTTGTCAA 60.614 41.667 0.00 0.00 45.81 3.18
389 390 3.120095 CGCTGCTTGATGAAATCTTGTCA 60.120 43.478 0.00 0.00 45.81 3.58
391 392 3.076621 TCGCTGCTTGATGAAATCTTGT 58.923 40.909 0.00 0.00 45.81 3.16
392 393 3.752412 TCGCTGCTTGATGAAATCTTG 57.248 42.857 0.00 0.00 45.81 3.02
393 394 3.943381 TGATCGCTGCTTGATGAAATCTT 59.057 39.130 0.00 0.00 45.81 2.40
415 416 6.380079 AGTTTAGGATGAAATGAGACCAGT 57.620 37.500 0.00 0.00 0.00 4.00
451 454 3.356529 AGGCTATTTTCAGTCCCTGTG 57.643 47.619 0.00 0.00 32.61 3.66
525 528 3.146104 ACATTCTAGCTTTGTGCACCT 57.854 42.857 15.69 6.48 45.94 4.00
530 533 7.324616 GCTTTCAGTTTACATTCTAGCTTTGTG 59.675 37.037 0.00 0.00 0.00 3.33
689 868 3.351794 AAACCTTAGCTAGTGGAAGGC 57.648 47.619 18.14 0.00 43.05 4.35
690 869 5.422650 AGACTAAACCTTAGCTAGTGGAAGG 59.577 44.000 18.14 14.44 44.53 3.46
791 971 4.439305 TTGAAGCTTGCATTACCATGTC 57.561 40.909 2.10 0.00 32.28 3.06
884 3966 1.369091 CTACCGGACAAGGCATGCAC 61.369 60.000 21.36 9.10 33.69 4.57
957 4041 2.124983 GCAGCGCAAGAGGATGGA 60.125 61.111 11.47 0.00 43.02 3.41
975 4059 4.632327 TGTTGGATTATGTGTGGAGTGA 57.368 40.909 0.00 0.00 0.00 3.41
979 4063 5.047448 CCATTGTTGTTGGATTATGTGTGGA 60.047 40.000 0.00 0.00 36.26 4.02
981 4065 4.626604 GCCATTGTTGTTGGATTATGTGTG 59.373 41.667 0.00 0.00 36.26 3.82
982 4066 4.527816 AGCCATTGTTGTTGGATTATGTGT 59.472 37.500 0.00 0.00 36.26 3.72
984 4068 5.337491 GGAAGCCATTGTTGTTGGATTATGT 60.337 40.000 0.00 0.00 42.63 2.29
985 4069 5.111293 GGAAGCCATTGTTGTTGGATTATG 58.889 41.667 0.00 0.00 42.63 1.90
986 4070 4.776837 TGGAAGCCATTGTTGTTGGATTAT 59.223 37.500 0.00 0.00 42.63 1.28
987 4071 4.155709 TGGAAGCCATTGTTGTTGGATTA 58.844 39.130 0.00 0.00 42.63 1.75
988 4072 2.971330 TGGAAGCCATTGTTGTTGGATT 59.029 40.909 0.00 0.00 45.11 3.01
990 4074 2.079170 TGGAAGCCATTGTTGTTGGA 57.921 45.000 0.00 0.00 36.26 3.53
1124 4221 0.034896 GGTGTTCGAGCTGGAAGGAA 59.965 55.000 11.84 0.00 0.00 3.36
1228 4331 2.897350 GTACTGGATGCGGCTGGC 60.897 66.667 0.00 0.00 43.96 4.85
1232 4335 0.529992 GTAGGTGTACTGGATGCGGC 60.530 60.000 0.00 0.00 0.00 6.53
1848 9594 1.449778 GTAGAAGGCTTCCACGGGC 60.450 63.158 23.09 4.39 0.00 6.13
1939 9685 3.298115 TTGACGCATTCGGGCCGTA 62.298 57.895 27.32 18.24 40.69 4.02
2158 15455 1.303236 CCACGACCTTGCCCATGAA 60.303 57.895 0.00 0.00 0.00 2.57
2232 15529 2.515991 GCGGAAATCATCCCGGCA 60.516 61.111 0.00 0.00 46.39 5.69
2330 15630 1.277842 TGTAATCGGCCAGCTTCTTGA 59.722 47.619 2.24 0.00 0.00 3.02
2583 18926 1.818363 CATCGACGTCCCCGAGAGA 60.818 63.158 10.58 0.00 39.55 3.10
2697 19040 3.311110 TTCTTGTCGAGCGGGCCT 61.311 61.111 0.84 0.00 0.00 5.19
3213 19556 2.516448 CCTGTTCTCCCAGGCGATA 58.484 57.895 0.00 0.00 45.19 2.92
3285 19628 0.970937 CTCAGAGTCCCGGCCTACAA 60.971 60.000 0.00 0.00 0.00 2.41
3322 19667 7.482654 TCAAAACATTACACTCTCAGAGTTG 57.517 36.000 3.92 3.42 41.37 3.16
3368 19782 6.419980 AATGCTGATTCTTCTTCTTCTTCG 57.580 37.500 0.00 0.00 0.00 3.79
3464 19884 5.067413 ACGATGATCCATACGAAGTTACTGT 59.933 40.000 0.00 0.00 37.78 3.55
3465 19885 5.520632 ACGATGATCCATACGAAGTTACTG 58.479 41.667 0.00 0.00 37.78 2.74
3471 20054 3.643159 TGGACGATGATCCATACGAAG 57.357 47.619 0.00 0.00 44.14 3.79
3663 20280 3.319972 AGCAACACCAGTCTTAGACGTAA 59.680 43.478 6.73 0.00 37.67 3.18
3664 20281 2.889045 AGCAACACCAGTCTTAGACGTA 59.111 45.455 6.73 0.00 37.67 3.57
3665 20282 1.687123 AGCAACACCAGTCTTAGACGT 59.313 47.619 6.73 0.00 37.67 4.34
3667 20284 3.067833 GGAAGCAACACCAGTCTTAGAC 58.932 50.000 3.85 3.85 0.00 2.59
3668 20285 2.288825 CGGAAGCAACACCAGTCTTAGA 60.289 50.000 0.00 0.00 0.00 2.10
3669 20286 2.069273 CGGAAGCAACACCAGTCTTAG 58.931 52.381 0.00 0.00 0.00 2.18
3671 20288 3.006672 CGGAAGCAACACCAGTCTT 57.993 52.632 0.00 0.00 0.00 3.01
3693 20565 0.527600 TACGACGGCAGATGATGTGC 60.528 55.000 5.94 5.94 40.42 4.57
3694 20566 2.140065 ATACGACGGCAGATGATGTG 57.860 50.000 0.00 0.00 0.00 3.21
3695 20567 2.159099 ACAATACGACGGCAGATGATGT 60.159 45.455 0.00 0.00 0.00 3.06
3696 20568 2.219445 CACAATACGACGGCAGATGATG 59.781 50.000 0.00 0.00 0.00 3.07
3716 20588 2.203422 CCGAACCAAACAGGGCCA 60.203 61.111 6.18 0.00 43.89 5.36
3717 20589 3.680786 GCCGAACCAAACAGGGCC 61.681 66.667 0.00 0.00 43.89 5.80
3718 20590 2.597510 AGCCGAACCAAACAGGGC 60.598 61.111 0.00 0.00 43.89 5.19
3719 20591 1.528309 ACAGCCGAACCAAACAGGG 60.528 57.895 0.00 0.00 43.89 4.45
3720 20592 1.654220 CACAGCCGAACCAAACAGG 59.346 57.895 0.00 0.00 45.67 4.00
3721 20593 0.817634 TCCACAGCCGAACCAAACAG 60.818 55.000 0.00 0.00 0.00 3.16
3722 20594 0.179004 ATCCACAGCCGAACCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
3723 20595 0.958822 AATCCACAGCCGAACCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
3724 20596 1.611491 GAAATCCACAGCCGAACCAAA 59.389 47.619 0.00 0.00 0.00 3.28
3725 20597 1.202879 AGAAATCCACAGCCGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
3726 20598 0.400213 AGAAATCCACAGCCGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
3727 20599 2.396590 TAGAAATCCACAGCCGAACC 57.603 50.000 0.00 0.00 0.00 3.62
3728 20600 4.723248 CTTTTAGAAATCCACAGCCGAAC 58.277 43.478 0.00 0.00 0.00 3.95
3729 20601 3.190535 GCTTTTAGAAATCCACAGCCGAA 59.809 43.478 0.00 0.00 0.00 4.30
3730 20602 2.747446 GCTTTTAGAAATCCACAGCCGA 59.253 45.455 0.00 0.00 0.00 5.54
3731 20603 2.487762 TGCTTTTAGAAATCCACAGCCG 59.512 45.455 0.00 0.00 0.00 5.52
3732 20604 3.674410 GCTGCTTTTAGAAATCCACAGCC 60.674 47.826 0.00 0.00 42.58 4.85
3733 20605 3.505836 GCTGCTTTTAGAAATCCACAGC 58.494 45.455 0.00 0.00 42.00 4.40
3734 20606 4.217118 ACAGCTGCTTTTAGAAATCCACAG 59.783 41.667 15.27 0.00 0.00 3.66
3735 20607 4.144297 ACAGCTGCTTTTAGAAATCCACA 58.856 39.130 15.27 0.00 0.00 4.17
3736 20608 4.773323 ACAGCTGCTTTTAGAAATCCAC 57.227 40.909 15.27 0.00 0.00 4.02
3737 20609 6.892658 TTTACAGCTGCTTTTAGAAATCCA 57.107 33.333 15.27 0.00 0.00 3.41
3760 20632 9.570488 CACATCAAATTTTCCACAACAAATTTT 57.430 25.926 0.00 0.00 39.49 1.82
3761 20633 8.954350 TCACATCAAATTTTCCACAACAAATTT 58.046 25.926 0.00 0.00 41.27 1.82
3762 20634 8.503458 TCACATCAAATTTTCCACAACAAATT 57.497 26.923 0.00 0.00 34.68 1.82
3763 20635 8.503458 TTCACATCAAATTTTCCACAACAAAT 57.497 26.923 0.00 0.00 0.00 2.32
3764 20636 7.912056 TTCACATCAAATTTTCCACAACAAA 57.088 28.000 0.00 0.00 0.00 2.83
3765 20637 7.912056 TTTCACATCAAATTTTCCACAACAA 57.088 28.000 0.00 0.00 0.00 2.83
3766 20638 7.912056 TTTTCACATCAAATTTTCCACAACA 57.088 28.000 0.00 0.00 0.00 3.33
3767 20639 8.663911 TCTTTTTCACATCAAATTTTCCACAAC 58.336 29.630 0.00 0.00 0.00 3.32
3768 20640 8.783833 TCTTTTTCACATCAAATTTTCCACAA 57.216 26.923 0.00 0.00 0.00 3.33
3769 20641 8.828644 CATCTTTTTCACATCAAATTTTCCACA 58.171 29.630 0.00 0.00 0.00 4.17
3770 20642 8.829612 ACATCTTTTTCACATCAAATTTTCCAC 58.170 29.630 0.00 0.00 0.00 4.02
3771 20643 8.828644 CACATCTTTTTCACATCAAATTTTCCA 58.171 29.630 0.00 0.00 0.00 3.53
3772 20644 9.044150 TCACATCTTTTTCACATCAAATTTTCC 57.956 29.630 0.00 0.00 0.00 3.13
3774 20646 9.603921 ACTCACATCTTTTTCACATCAAATTTT 57.396 25.926 0.00 0.00 0.00 1.82
3775 20647 9.252962 GACTCACATCTTTTTCACATCAAATTT 57.747 29.630 0.00 0.00 0.00 1.82
3776 20648 8.415553 TGACTCACATCTTTTTCACATCAAATT 58.584 29.630 0.00 0.00 0.00 1.82
3777 20649 7.944061 TGACTCACATCTTTTTCACATCAAAT 58.056 30.769 0.00 0.00 0.00 2.32
3778 20650 7.332213 TGACTCACATCTTTTTCACATCAAA 57.668 32.000 0.00 0.00 0.00 2.69
3779 20651 6.940831 TGACTCACATCTTTTTCACATCAA 57.059 33.333 0.00 0.00 0.00 2.57
3780 20652 7.514784 AATGACTCACATCTTTTTCACATCA 57.485 32.000 0.00 0.00 38.38 3.07
3781 20653 7.327761 CCAAATGACTCACATCTTTTTCACATC 59.672 37.037 0.00 0.00 38.38 3.06
3782 20654 7.149973 CCAAATGACTCACATCTTTTTCACAT 58.850 34.615 0.00 0.00 38.38 3.21
3783 20655 6.506147 CCAAATGACTCACATCTTTTTCACA 58.494 36.000 0.00 0.00 38.38 3.58
3784 20656 5.403466 GCCAAATGACTCACATCTTTTTCAC 59.597 40.000 0.00 0.00 38.38 3.18
3785 20657 5.068855 TGCCAAATGACTCACATCTTTTTCA 59.931 36.000 0.00 0.00 38.38 2.69
3786 20658 5.531634 TGCCAAATGACTCACATCTTTTTC 58.468 37.500 0.00 0.00 38.38 2.29
3787 20659 5.534207 TGCCAAATGACTCACATCTTTTT 57.466 34.783 0.00 0.00 38.38 1.94
3788 20660 5.534207 TTGCCAAATGACTCACATCTTTT 57.466 34.783 0.00 0.00 38.38 2.27
3789 20661 5.291971 GTTTGCCAAATGACTCACATCTTT 58.708 37.500 0.00 0.00 38.38 2.52
3790 20662 4.262164 GGTTTGCCAAATGACTCACATCTT 60.262 41.667 0.00 0.00 34.76 2.40
3791 20663 3.256631 GGTTTGCCAAATGACTCACATCT 59.743 43.478 0.00 0.00 34.76 2.90
3792 20664 3.005684 TGGTTTGCCAAATGACTCACATC 59.994 43.478 0.00 0.00 42.83 3.06
3793 20665 2.964464 TGGTTTGCCAAATGACTCACAT 59.036 40.909 0.00 0.00 42.83 3.21
3794 20666 2.361757 CTGGTTTGCCAAATGACTCACA 59.638 45.455 0.00 0.00 45.51 3.58
3795 20667 2.863704 GCTGGTTTGCCAAATGACTCAC 60.864 50.000 0.00 0.00 45.51 3.51
3796 20668 1.340889 GCTGGTTTGCCAAATGACTCA 59.659 47.619 0.00 0.00 45.51 3.41
3797 20669 1.615392 AGCTGGTTTGCCAAATGACTC 59.385 47.619 0.00 0.00 45.51 3.36
3798 20670 1.342174 CAGCTGGTTTGCCAAATGACT 59.658 47.619 5.57 0.00 45.51 3.41
3799 20671 1.340889 TCAGCTGGTTTGCCAAATGAC 59.659 47.619 15.13 0.00 45.51 3.06
3800 20672 1.702182 TCAGCTGGTTTGCCAAATGA 58.298 45.000 15.13 0.00 45.51 2.57
3801 20673 2.754946 ATCAGCTGGTTTGCCAAATG 57.245 45.000 15.13 0.00 45.51 2.32
3802 20674 3.164268 TGTATCAGCTGGTTTGCCAAAT 58.836 40.909 15.13 0.00 45.51 2.32
3803 20675 2.557924 CTGTATCAGCTGGTTTGCCAAA 59.442 45.455 15.13 0.00 45.51 3.28
3804 20676 2.161855 CTGTATCAGCTGGTTTGCCAA 58.838 47.619 15.13 0.00 45.51 4.52
3805 20677 1.825090 CTGTATCAGCTGGTTTGCCA 58.175 50.000 15.13 1.11 43.73 4.92
3816 20688 6.309737 GCCAAAATCTGAAAAAGCTGTATCAG 59.690 38.462 13.84 13.84 40.46 2.90
3817 20689 6.158598 GCCAAAATCTGAAAAAGCTGTATCA 58.841 36.000 0.00 0.00 0.00 2.15
3818 20690 5.578336 GGCCAAAATCTGAAAAAGCTGTATC 59.422 40.000 0.00 0.00 0.00 2.24
3819 20691 5.482006 GGCCAAAATCTGAAAAAGCTGTAT 58.518 37.500 0.00 0.00 0.00 2.29
3820 20692 4.262420 GGGCCAAAATCTGAAAAAGCTGTA 60.262 41.667 4.39 0.00 0.00 2.74
3821 20693 3.494924 GGGCCAAAATCTGAAAAAGCTGT 60.495 43.478 4.39 0.00 0.00 4.40
3822 20694 3.069289 GGGCCAAAATCTGAAAAAGCTG 58.931 45.455 4.39 0.00 0.00 4.24
3823 20695 2.289010 CGGGCCAAAATCTGAAAAAGCT 60.289 45.455 4.39 0.00 0.00 3.74
3824 20696 2.068519 CGGGCCAAAATCTGAAAAAGC 58.931 47.619 4.39 0.00 0.00 3.51
3825 20697 2.068519 GCGGGCCAAAATCTGAAAAAG 58.931 47.619 4.39 0.00 0.00 2.27
3826 20698 1.414181 TGCGGGCCAAAATCTGAAAAA 59.586 42.857 4.39 0.00 0.00 1.94
3827 20699 1.000731 CTGCGGGCCAAAATCTGAAAA 59.999 47.619 4.39 0.00 0.00 2.29
3828 20700 0.602562 CTGCGGGCCAAAATCTGAAA 59.397 50.000 4.39 0.00 0.00 2.69
3829 20701 1.876497 GCTGCGGGCCAAAATCTGAA 61.876 55.000 4.39 0.00 34.27 3.02
3830 20702 2.342650 GCTGCGGGCCAAAATCTGA 61.343 57.895 4.39 0.00 34.27 3.27
3831 20703 2.182537 GCTGCGGGCCAAAATCTG 59.817 61.111 4.39 0.00 34.27 2.90
3832 20704 3.443045 CGCTGCGGGCCAAAATCT 61.443 61.111 15.40 0.00 37.74 2.40
3833 20705 4.496927 CCGCTGCGGGCCAAAATC 62.497 66.667 32.37 0.00 44.15 2.17
3843 20715 1.532505 CCAAAATCTGATTCCGCTGCG 60.533 52.381 16.34 16.34 0.00 5.18
3844 20716 1.745087 TCCAAAATCTGATTCCGCTGC 59.255 47.619 2.92 0.00 0.00 5.25
3845 20717 4.418392 CTTTCCAAAATCTGATTCCGCTG 58.582 43.478 2.92 0.03 0.00 5.18
3846 20718 3.119352 GCTTTCCAAAATCTGATTCCGCT 60.119 43.478 2.92 0.00 0.00 5.52
3847 20719 3.182182 GCTTTCCAAAATCTGATTCCGC 58.818 45.455 2.92 0.00 0.00 5.54
3848 20720 3.429410 GGGCTTTCCAAAATCTGATTCCG 60.429 47.826 2.92 0.00 35.00 4.30
3849 20721 3.429410 CGGGCTTTCCAAAATCTGATTCC 60.429 47.826 2.92 0.00 34.36 3.01
3850 20722 3.193479 ACGGGCTTTCCAAAATCTGATTC 59.807 43.478 2.92 0.00 34.36 2.52
3851 20723 3.165071 ACGGGCTTTCCAAAATCTGATT 58.835 40.909 0.00 0.00 34.36 2.57
3852 20724 2.755103 GACGGGCTTTCCAAAATCTGAT 59.245 45.455 0.00 0.00 34.36 2.90
3853 20725 2.159382 GACGGGCTTTCCAAAATCTGA 58.841 47.619 0.00 0.00 34.36 3.27
3854 20726 1.202348 GGACGGGCTTTCCAAAATCTG 59.798 52.381 0.64 0.00 32.82 2.90
3855 20727 1.075536 AGGACGGGCTTTCCAAAATCT 59.924 47.619 7.53 0.00 35.33 2.40
3856 20728 1.202348 CAGGACGGGCTTTCCAAAATC 59.798 52.381 7.53 0.00 35.33 2.17
3857 20729 1.256812 CAGGACGGGCTTTCCAAAAT 58.743 50.000 7.53 0.00 35.33 1.82
3858 20730 0.825840 CCAGGACGGGCTTTCCAAAA 60.826 55.000 7.53 0.00 35.33 2.44
3859 20731 1.228429 CCAGGACGGGCTTTCCAAA 60.228 57.895 7.53 0.00 35.33 3.28
3860 20732 2.434331 CCAGGACGGGCTTTCCAA 59.566 61.111 7.53 0.00 35.33 3.53
3869 20741 4.785453 GGAAGCAGCCCAGGACGG 62.785 72.222 0.00 0.00 0.00 4.79
3882 20754 3.923017 AATCTGAACCAAAAGCGGAAG 57.077 42.857 0.00 0.00 0.00 3.46
3883 20755 4.367450 CAAAATCTGAACCAAAAGCGGAA 58.633 39.130 0.00 0.00 0.00 4.30
3884 20756 3.243704 CCAAAATCTGAACCAAAAGCGGA 60.244 43.478 0.00 0.00 0.00 5.54
3885 20757 3.059166 CCAAAATCTGAACCAAAAGCGG 58.941 45.455 0.00 0.00 0.00 5.52
3886 20758 2.476241 GCCAAAATCTGAACCAAAAGCG 59.524 45.455 0.00 0.00 0.00 4.68
3887 20759 3.465871 TGCCAAAATCTGAACCAAAAGC 58.534 40.909 0.00 0.00 0.00 3.51
3888 20760 3.495753 GCTGCCAAAATCTGAACCAAAAG 59.504 43.478 0.00 0.00 0.00 2.27
3889 20761 3.465871 GCTGCCAAAATCTGAACCAAAA 58.534 40.909 0.00 0.00 0.00 2.44
3890 20762 2.545532 CGCTGCCAAAATCTGAACCAAA 60.546 45.455 0.00 0.00 0.00 3.28
3891 20763 1.000385 CGCTGCCAAAATCTGAACCAA 60.000 47.619 0.00 0.00 0.00 3.67
3892 20764 0.597568 CGCTGCCAAAATCTGAACCA 59.402 50.000 0.00 0.00 0.00 3.67
3893 20765 0.109132 CCGCTGCCAAAATCTGAACC 60.109 55.000 0.00 0.00 0.00 3.62
3894 20766 0.881118 TCCGCTGCCAAAATCTGAAC 59.119 50.000 0.00 0.00 0.00 3.18
3895 20767 1.838112 ATCCGCTGCCAAAATCTGAA 58.162 45.000 0.00 0.00 0.00 3.02
3896 20768 1.838112 AATCCGCTGCCAAAATCTGA 58.162 45.000 0.00 0.00 0.00 3.27
3897 20769 2.165030 AGAAATCCGCTGCCAAAATCTG 59.835 45.455 0.00 0.00 0.00 2.90
3898 20770 2.165030 CAGAAATCCGCTGCCAAAATCT 59.835 45.455 0.00 0.00 0.00 2.40
3899 20771 2.533266 CAGAAATCCGCTGCCAAAATC 58.467 47.619 0.00 0.00 0.00 2.17
3900 20772 1.205417 CCAGAAATCCGCTGCCAAAAT 59.795 47.619 0.00 0.00 32.06 1.82
3901 20773 0.602562 CCAGAAATCCGCTGCCAAAA 59.397 50.000 0.00 0.00 32.06 2.44
3902 20774 0.251121 TCCAGAAATCCGCTGCCAAA 60.251 50.000 0.00 0.00 32.06 3.28
3903 20775 0.251121 TTCCAGAAATCCGCTGCCAA 60.251 50.000 0.00 0.00 32.06 4.52
3904 20776 0.034186 ATTCCAGAAATCCGCTGCCA 60.034 50.000 0.00 0.00 32.06 4.92
3905 20777 0.665298 GATTCCAGAAATCCGCTGCC 59.335 55.000 0.00 0.00 38.27 4.85
3906 20778 0.305922 CGATTCCAGAAATCCGCTGC 59.694 55.000 0.00 0.00 40.69 5.25
3907 20779 0.940126 CCGATTCCAGAAATCCGCTG 59.060 55.000 0.00 0.00 40.69 5.18
3908 20780 0.830648 TCCGATTCCAGAAATCCGCT 59.169 50.000 0.00 0.00 40.69 5.52
3909 20781 1.884235 ATCCGATTCCAGAAATCCGC 58.116 50.000 0.00 0.00 40.69 5.54
3910 20782 3.496130 CAGAATCCGATTCCAGAAATCCG 59.504 47.826 16.09 0.00 40.69 4.18
3911 20783 4.455606 ACAGAATCCGATTCCAGAAATCC 58.544 43.478 16.09 0.00 40.69 3.01
3912 20784 5.220931 CCAACAGAATCCGATTCCAGAAATC 60.221 44.000 16.09 0.00 40.13 2.17
3913 20785 4.641989 CCAACAGAATCCGATTCCAGAAAT 59.358 41.667 16.09 0.00 40.13 2.17
3914 20786 4.009675 CCAACAGAATCCGATTCCAGAAA 58.990 43.478 16.09 0.00 40.13 2.52
3915 20787 3.609853 CCAACAGAATCCGATTCCAGAA 58.390 45.455 16.09 0.00 40.13 3.02
3916 20788 2.092968 CCCAACAGAATCCGATTCCAGA 60.093 50.000 16.09 0.00 40.13 3.86
3917 20789 2.292267 CCCAACAGAATCCGATTCCAG 58.708 52.381 16.09 12.09 40.13 3.86
3918 20790 1.633432 ACCCAACAGAATCCGATTCCA 59.367 47.619 16.09 0.00 40.13 3.53
3919 20791 2.420058 ACCCAACAGAATCCGATTCC 57.580 50.000 16.09 0.95 40.13 3.01
3920 20792 2.351726 CGAACCCAACAGAATCCGATTC 59.648 50.000 12.51 12.51 39.56 2.52
3921 20793 2.356135 CGAACCCAACAGAATCCGATT 58.644 47.619 0.00 0.00 0.00 3.34
3922 20794 2.012051 GCGAACCCAACAGAATCCGAT 61.012 52.381 0.00 0.00 0.00 4.18
3923 20795 0.672401 GCGAACCCAACAGAATCCGA 60.672 55.000 0.00 0.00 0.00 4.55
3924 20796 1.644786 GGCGAACCCAACAGAATCCG 61.645 60.000 0.00 0.00 0.00 4.18
3925 20797 2.180674 GGCGAACCCAACAGAATCC 58.819 57.895 0.00 0.00 0.00 3.01
3936 20808 0.536460 TCTGAACCAAAGGGCGAACC 60.536 55.000 0.00 0.00 37.90 3.62
3937 20809 1.534729 ATCTGAACCAAAGGGCGAAC 58.465 50.000 0.00 0.00 37.90 3.95
3938 20810 2.159382 GAATCTGAACCAAAGGGCGAA 58.841 47.619 0.00 0.00 37.90 4.70
3939 20811 1.351017 AGAATCTGAACCAAAGGGCGA 59.649 47.619 0.00 0.00 37.90 5.54
3940 20812 1.470098 CAGAATCTGAACCAAAGGGCG 59.530 52.381 3.77 0.00 33.00 6.13
3941 20813 2.519013 ACAGAATCTGAACCAAAGGGC 58.481 47.619 18.20 0.00 34.61 5.19
3942 20814 3.305608 GCAACAGAATCTGAACCAAAGGG 60.306 47.826 18.20 0.00 36.26 3.95
3943 20815 3.610114 CGCAACAGAATCTGAACCAAAGG 60.610 47.826 18.20 0.00 35.18 3.11
3944 20816 3.558505 CGCAACAGAATCTGAACCAAAG 58.441 45.455 18.20 0.00 35.18 2.77
3945 20817 2.287547 GCGCAACAGAATCTGAACCAAA 60.288 45.455 18.20 0.00 35.18 3.28
3946 20818 1.266718 GCGCAACAGAATCTGAACCAA 59.733 47.619 18.20 0.00 35.18 3.67
3947 20819 0.874390 GCGCAACAGAATCTGAACCA 59.126 50.000 18.20 0.00 35.18 3.67
3948 20820 0.179215 CGCGCAACAGAATCTGAACC 60.179 55.000 18.20 3.27 35.18 3.62
3949 20821 0.790207 TCGCGCAACAGAATCTGAAC 59.210 50.000 18.20 4.69 35.18 3.18
3950 20822 0.790207 GTCGCGCAACAGAATCTGAA 59.210 50.000 18.20 0.00 35.18 3.02
3951 20823 1.344226 CGTCGCGCAACAGAATCTGA 61.344 55.000 18.20 0.00 35.18 3.27
3952 20824 1.057822 CGTCGCGCAACAGAATCTG 59.942 57.895 8.75 8.98 37.52 2.90
3953 20825 2.094659 CCGTCGCGCAACAGAATCT 61.095 57.895 8.75 0.00 0.00 2.40
3954 20826 2.395690 CCGTCGCGCAACAGAATC 59.604 61.111 8.75 0.00 0.00 2.52
3955 20827 3.788766 GCCGTCGCGCAACAGAAT 61.789 61.111 8.75 0.00 0.00 2.40
3973 20845 3.541632 TCAGCTTTTATGGACGGATTCC 58.458 45.455 0.00 0.00 46.13 3.01
3974 20846 4.201920 GGTTCAGCTTTTATGGACGGATTC 60.202 45.833 0.00 0.00 0.00 2.52
3975 20847 3.694566 GGTTCAGCTTTTATGGACGGATT 59.305 43.478 0.00 0.00 0.00 3.01
3976 20848 3.279434 GGTTCAGCTTTTATGGACGGAT 58.721 45.455 0.00 0.00 0.00 4.18
3977 20849 2.039216 TGGTTCAGCTTTTATGGACGGA 59.961 45.455 0.00 0.00 0.00 4.69
3978 20850 2.432444 TGGTTCAGCTTTTATGGACGG 58.568 47.619 0.00 0.00 0.00 4.79
3979 20851 4.226761 GTTTGGTTCAGCTTTTATGGACG 58.773 43.478 0.00 0.00 0.00 4.79
3980 20852 5.195001 TGTTTGGTTCAGCTTTTATGGAC 57.805 39.130 0.00 0.00 0.00 4.02
3981 20853 4.280677 CCTGTTTGGTTCAGCTTTTATGGA 59.719 41.667 0.00 0.00 0.00 3.41
3982 20854 4.559153 CCTGTTTGGTTCAGCTTTTATGG 58.441 43.478 0.00 0.00 0.00 2.74
3983 20855 4.559153 CCCTGTTTGGTTCAGCTTTTATG 58.441 43.478 0.00 0.00 0.00 1.90
3984 20856 3.006859 GCCCTGTTTGGTTCAGCTTTTAT 59.993 43.478 0.00 0.00 0.00 1.40
3985 20857 2.364002 GCCCTGTTTGGTTCAGCTTTTA 59.636 45.455 0.00 0.00 0.00 1.52
3986 20858 1.138859 GCCCTGTTTGGTTCAGCTTTT 59.861 47.619 0.00 0.00 0.00 2.27
3987 20859 0.752658 GCCCTGTTTGGTTCAGCTTT 59.247 50.000 0.00 0.00 0.00 3.51
3988 20860 1.115326 GGCCCTGTTTGGTTCAGCTT 61.115 55.000 0.00 0.00 0.00 3.74
3989 20861 1.531602 GGCCCTGTTTGGTTCAGCT 60.532 57.895 0.00 0.00 0.00 4.24
3990 20862 1.832167 TGGCCCTGTTTGGTTCAGC 60.832 57.895 0.00 0.00 0.00 4.26
3991 20863 0.754957 TGTGGCCCTGTTTGGTTCAG 60.755 55.000 0.00 0.00 0.00 3.02
3992 20864 0.754957 CTGTGGCCCTGTTTGGTTCA 60.755 55.000 0.00 0.00 0.00 3.18
3993 20865 1.463553 CCTGTGGCCCTGTTTGGTTC 61.464 60.000 0.00 0.00 0.00 3.62
3994 20866 1.457455 CCTGTGGCCCTGTTTGGTT 60.457 57.895 0.00 0.00 0.00 3.67
3995 20867 1.729267 ATCCTGTGGCCCTGTTTGGT 61.729 55.000 0.00 0.00 0.00 3.67
3996 20868 0.331278 TATCCTGTGGCCCTGTTTGG 59.669 55.000 0.00 0.00 0.00 3.28
3997 20869 2.442236 ATATCCTGTGGCCCTGTTTG 57.558 50.000 0.00 0.00 0.00 2.93
3998 20870 3.785887 TCTTATATCCTGTGGCCCTGTTT 59.214 43.478 0.00 0.00 0.00 2.83
3999 20871 3.393687 TCTTATATCCTGTGGCCCTGTT 58.606 45.455 0.00 0.00 0.00 3.16
4000 20872 3.060479 TCTTATATCCTGTGGCCCTGT 57.940 47.619 0.00 0.00 0.00 4.00
4001 20873 4.437682 TTTCTTATATCCTGTGGCCCTG 57.562 45.455 0.00 0.00 0.00 4.45
4002 20874 4.416848 ACATTTCTTATATCCTGTGGCCCT 59.583 41.667 0.00 0.00 0.00 5.19
4003 20875 4.729868 ACATTTCTTATATCCTGTGGCCC 58.270 43.478 0.00 0.00 0.00 5.80
4004 20876 5.625150 AGACATTTCTTATATCCTGTGGCC 58.375 41.667 0.00 0.00 0.00 5.36
4005 20877 7.715249 TGTTAGACATTTCTTATATCCTGTGGC 59.285 37.037 0.00 0.00 32.75 5.01
4006 20878 9.613428 TTGTTAGACATTTCTTATATCCTGTGG 57.387 33.333 0.00 0.00 32.75 4.17
4038 20910 5.592054 TCCAAGTAGCATTTGTCTCGATAG 58.408 41.667 0.00 0.00 0.00 2.08
4044 20916 6.566197 CTTCTTTCCAAGTAGCATTTGTCT 57.434 37.500 0.00 0.00 0.00 3.41
4062 20934 8.796475 TGTTAGCTATTTTCAAATCTGCTTCTT 58.204 29.630 14.10 0.00 38.42 2.52
4171 21327 7.114529 CGACCCGAATGTTCTATTTAGACATAC 59.885 40.741 0.00 0.00 30.81 2.39
4182 21338 0.452987 CGACCGACCCGAATGTTCTA 59.547 55.000 0.00 0.00 0.00 2.10
4191 21347 0.526954 CCAATTAGTCGACCGACCCG 60.527 60.000 17.62 0.00 45.59 5.28
4197 21353 3.869065 TCATGAACCCAATTAGTCGACC 58.131 45.455 13.01 0.00 0.00 4.79
4205 21361 7.322664 GTGTTATCATGTTCATGAACCCAATT 58.677 34.615 30.66 16.51 40.46 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.