AutoCloner

Multiple sequence alignment - TraesCS5D01G194300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G194300	chr5D	100.000	4329	0	0	1	4329	298141933	298146261	0.000000e+00	7995.0
1	TraesCS5D01G194300	chr5D	88.419	3048	221	68	727	3684	298282711	298279706	0.000000e+00	3552.0
2	TraesCS5D01G194300	chr5D	87.769	2878	202	75	727	3481	298463793	298460943	0.000000e+00	3227.0
3	TraesCS5D01G194300	chr5D	89.521	2109	128	32	1637	3678	307094055	307096137	0.000000e+00	2584.0
4	TraesCS5D01G194300	chr5D	85.197	939	99	33	727	1636	307093094	307094021	0.000000e+00	928.0
5	TraesCS5D01G194300	chr5D	88.288	444	23	14	3258	3686	307344283	307344712	5.000000e-139	505.0
6	TraesCS5D01G194300	chr5D	86.907	443	26	15	3258	3686	307184097	307184521	6.560000e-128	468.0
7	TraesCS5D01G194300	chr5D	87.387	111	12	2	4220	4329	158511420	158511529	4.540000e-25	126.0
8	TraesCS5D01G194300	chr5D	91.667	72	1	4	3824	3891	441356339	441356409	1.280000e-15	95.3
9	TraesCS5D01G194300	chr5A	90.592	3072	166	46	628	3625	400573093	400576115	0.000000e+00	3958.0
10	TraesCS5D01G194300	chr5A	88.305	1693	142	19	1637	3294	390243800	390242129	0.000000e+00	1978.0
11	TraesCS5D01G194300	chr5A	90.812	1306	64	13	2396	3686	400769942	400768678	0.000000e+00	1696.0
12	TraesCS5D01G194300	chr5A	94.360	656	32	5	3676	4329	400576510	400577162	0.000000e+00	1002.0
13	TraesCS5D01G194300	chr5A	92.960	625	42	2	1014	1637	400777642	400777019	0.000000e+00	909.0
14	TraesCS5D01G194300	chr5A	91.884	653	42	7	993	1636	390244484	390243834	0.000000e+00	902.0
15	TraesCS5D01G194300	chr5A	85.560	741	64	17	1703	2410	400773700	400772970	0.000000e+00	736.0
16	TraesCS5D01G194300	chr5A	91.667	60	1	1	3623	3678	400576211	400576270	3.590000e-11	80.5
17	TraesCS5D01G194300	chr5B	91.368	2792	157	34	949	3686	338959393	338962154	0.000000e+00	3744.0
18	TraesCS5D01G194300	chr5B	91.368	2792	157	34	949	3686	338964897	338967658	0.000000e+00	3744.0
19	TraesCS5D01G194300	chr5B	88.682	1935	116	38	1635	3481	339288069	339286150	0.000000e+00	2265.0
20	TraesCS5D01G194300	chr5B	89.374	1694	120	20	1637	3294	352383002	352384671	0.000000e+00	2076.0
21	TraesCS5D01G194300	chr5B	95.462	1168	44	4	530	1690	339090244	339089079	0.000000e+00	1855.0
22	TraesCS5D01G194300	chr5B	88.662	1517	101	29	1999	3467	339080269	339078776	0.000000e+00	1783.0
23	TraesCS5D01G194300	chr5B	92.819	557	24	6	3466	4021	339078614	339078073	0.000000e+00	793.0
24	TraesCS5D01G194300	chr5B	93.681	364	22	1	3966	4328	339078073	339077710	1.060000e-150	544.0
25	TraesCS5D01G194300	chr5B	91.413	361	13	4	1	355	339093328	339092980	3.030000e-131	479.0
26	TraesCS5D01G194300	chr5B	95.017	301	12	1	1681	1981	339081372	339081075	1.820000e-128	470.0
27	TraesCS5D01G194300	chr5B	93.333	135	6	1	340	471	339092947	339092813	3.420000e-46	196.0
28	TraesCS5D01G194300	chr5B	91.358	81	4	2	800	880	338959205	338959282	1.650000e-19	108.0
29	TraesCS5D01G194300	chr5B	91.358	81	4	2	800	880	338964709	338964786	1.650000e-19	108.0
30	TraesCS5D01G194300	chr5B	98.182	55	1	0	459	513	339091183	339091129	3.560000e-16	97.1
31	TraesCS5D01G194300	chr4B	88.764	89	6	3	3811	3896	45493319	45493406	5.920000e-19	106.0
32	TraesCS5D01G194300	chr4B	94.030	67	3	1	3825	3890	109046755	109046821	2.750000e-17	100.0
33	TraesCS5D01G194300	chr7A	91.549	71	4	2	3823	3893	127675726	127675658	3.560000e-16	97.1
34	TraesCS5D01G194300	chr7A	90.411	73	3	3	3821	3890	135963977	135963906	4.610000e-15	93.5
35	TraesCS5D01G194300	chr1D	92.647	68	1	3	3824	3890	48193813	48193877	1.280000e-15	95.3
36	TraesCS5D01G194300	chr3B	88.889	81	2	4	3812	3890	450848180	450848105	4.610000e-15	93.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G194300	chr5D	298141933	298146261	4328	False	7995.000000	7995	100.000000	1	4329	1	chr5D.!!$F2	4328
1	TraesCS5D01G194300	chr5D	298279706	298282711	3005	True	3552.000000	3552	88.419000	727	3684	1	chr5D.!!$R1	2957
2	TraesCS5D01G194300	chr5D	298460943	298463793	2850	True	3227.000000	3227	87.769000	727	3481	1	chr5D.!!$R2	2754
3	TraesCS5D01G194300	chr5D	307093094	307096137	3043	False	1756.000000	2584	87.359000	727	3678	2	chr5D.!!$F6	2951
4	TraesCS5D01G194300	chr5A	400573093	400577162	4069	False	1680.166667	3958	92.206333	628	4329	3	chr5A.!!$F1	3701
5	TraesCS5D01G194300	chr5A	390242129	390244484	2355	True	1440.000000	1978	90.094500	993	3294	2	chr5A.!!$R1	2301
6	TraesCS5D01G194300	chr5A	400768678	400777642	8964	True	1113.666667	1696	89.777333	1014	3686	3	chr5A.!!$R2	2672
7	TraesCS5D01G194300	chr5B	339286150	339288069	1919	True	2265.000000	2265	88.682000	1635	3481	1	chr5B.!!$R1	1846
8	TraesCS5D01G194300	chr5B	352383002	352384671	1669	False	2076.000000	2076	89.374000	1637	3294	1	chr5B.!!$F1	1657
9	TraesCS5D01G194300	chr5B	338959205	338967658	8453	False	1926.000000	3744	91.363000	800	3686	4	chr5B.!!$F2	2886
10	TraesCS5D01G194300	chr5B	339077710	339081372	3662	True	897.500000	1783	92.544750	1681	4328	4	chr5B.!!$R2	2647
11	TraesCS5D01G194300	chr5B	339089079	339093328	4249	True	656.775000	1855	94.597500	1	1690	4	chr5B.!!$R3	1689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	End Stability	Orientation
793	3361	0.768221	AGTCTGGAGGGAAGCCACAA	60.768	55.000	0.00	3.33	F
1380	6196	1.217244	GTCCCGCGTGTACAAGGAT	59.783	57.895	10.87	3.24	F
2902	14898	0.669625	GCACCCTCAACTACACGGTC	60.670	60.000	0.00	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
1777	9889	0.168128	GGAATGCACGCCTTGTACAC	59.832	55.0	2.90	R
3061	15057	0.522180	CCGTCACGTTGTAGCTCTCT	59.478	55.0	3.10	R
4249	16897	0.872881	CTGAACGGGCGGGTTATACG	60.873	60.0	3.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	1.741706	CTGGCAGCATTTGTACTGGAG	59.258	52.381	0.00	0.00	34.38	3.86
44	45	1.073763	TGGCAGCATTTGTACTGGAGT	59.926	47.619	0.00	0.00	34.38	3.85
46	47	2.939103	GGCAGCATTTGTACTGGAGTAG	59.061	50.000	0.00	0.00	34.38	2.57
47	48	3.600388	GCAGCATTTGTACTGGAGTAGT	58.400	45.455	0.00	0.00	43.56	2.73
48	49	3.372206	GCAGCATTTGTACTGGAGTAGTG	59.628	47.826	0.00	0.00	40.65	2.74
49	50	4.569943	CAGCATTTGTACTGGAGTAGTGT	58.430	43.478	0.00	0.00	40.65	3.55
50	51	5.720202	CAGCATTTGTACTGGAGTAGTGTA	58.280	41.667	0.00	0.00	40.65	2.90
51	52	5.577164	CAGCATTTGTACTGGAGTAGTGTAC	59.423	44.000	0.00	0.00	40.65	2.90
53	54	6.070767	AGCATTTGTACTGGAGTAGTGTACAT	60.071	38.462	0.00	0.00	43.68	2.29
56	57	6.659745	TTGTACTGGAGTAGTGTACATGTT	57.340	37.500	2.30	0.00	43.68	2.71
68	69	3.679980	GTGTACATGTTGTGTGGAGCTAG	59.320	47.826	2.30	0.00	42.24	3.42
79	80	2.703536	TGTGGAGCTAGAAACAACCTCA	59.296	45.455	0.00	0.00	0.00	3.86
114	115	4.261741	GCAGGTGTGTGAACAAATTCAGAT	60.262	41.667	0.00	0.00	45.58	2.90
122	125	7.866898	TGTGTGAACAAATTCAGATATTGTTGG	59.133	33.333	15.32	0.00	45.58	3.77
185	192	1.552792	AGAGAAGGGTACTCAGCAAGC	59.447	52.381	0.00	0.00	36.91	4.01
328	335	7.961283	CAGTAATCACATTGTTCAAGACTGATG	59.039	37.037	8.76	0.00	33.96	3.07
397	455	1.076332	CGGGCTTCTTTACGTCTTGG	58.924	55.000	0.00	0.00	0.00	3.61
416	474	5.942826	TCTTGGCACATGTGATGTTGTATTA	59.057	36.000	29.80	0.69	42.70	0.98
455	513	3.755378	GCATGACTGATTTCACCAGAGTT	59.245	43.478	0.00	0.00	35.69	3.01
580	3148	3.638627	AGCTTCAGGAAAAGACAAAAGGG	59.361	43.478	0.00	0.00	0.00	3.95
607	3175	3.694566	AGTGGAGGCCGTTTCATTATTTC	59.305	43.478	0.00	0.00	0.00	2.17
690	3258	3.815809	ACGTCCAAGACTTGAAATGGAA	58.184	40.909	16.99	0.00	43.21	3.53
793	3361	0.768221	AGTCTGGAGGGAAGCCACAA	60.768	55.000	0.00	0.00	0.00	3.33
925	5678	5.806502	CGATGCAAATATTTTTCTCTTGGCA	59.193	36.000	0.00	3.16	0.00	4.92
1158	5974	2.033141	GAGGAGCACAAGCAGCCA	59.967	61.111	0.00	0.00	45.49	4.75
1163	5979	1.228337	AGCACAAGCAGCCACATCA	60.228	52.632	0.00	0.00	45.49	3.07
1211	6027	2.281761	CAACCACCTCGCCAAGCT	60.282	61.111	0.00	0.00	0.00	3.74
1380	6196	1.217244	GTCCCGCGTGTACAAGGAT	59.783	57.895	10.87	0.00	0.00	3.24
1807	9919	1.202065	CGTGCATTCCCATGAAAGACG	60.202	52.381	0.00	0.00	33.32	4.18
1808	9920	2.083774	GTGCATTCCCATGAAAGACGA	58.916	47.619	0.00	0.00	33.32	4.20
1809	9921	2.083774	TGCATTCCCATGAAAGACGAC	58.916	47.619	0.00	0.00	33.32	4.34
1994	10890	2.892640	CAACGATGGCCCGAGAGA	59.107	61.111	8.49	0.00	0.00	3.10
1995	10891	1.519455	CAACGATGGCCCGAGAGAC	60.519	63.158	8.49	0.00	0.00	3.36
2080	11012	3.626924	GACGGGGTGGTGCTCACT	61.627	66.667	9.83	0.00	45.38	3.41
2106	11038	0.899720	TCCCTGTACAACATCCCGTC	59.100	55.000	0.00	0.00	0.00	4.79
2138	11076	1.302033	GGCATGATCCCGCTAGTGG	60.302	63.158	15.87	15.87	0.00	4.00
2139	11077	1.748403	GCATGATCCCGCTAGTGGA	59.252	57.895	24.31	14.33	36.05	4.02
2222	11175	2.125269	GAGCTTCGGCCGGCTTTA	60.125	61.111	26.41	9.29	43.01	1.85
2236	11189	1.066787	GGCTTTAACGTGGAGAGAGCT	60.067	52.381	0.00	0.00	0.00	4.09
2325	11278	3.007581	ACCTTCCCGGTATCTTGCT	57.992	52.632	0.00	0.00	46.73	3.91
2326	11279	0.831307	ACCTTCCCGGTATCTTGCTC	59.169	55.000	0.00	0.00	46.73	4.26
2327	11280	0.830648	CCTTCCCGGTATCTTGCTCA	59.169	55.000	0.00	0.00	0.00	4.26
2483	14479	2.044352	CCAACCCGATTGTCCCCC	60.044	66.667	0.00	0.00	36.47	5.40
2598	14594	2.753452	GGAGAGTCGAGTACAACATCCA	59.247	50.000	0.00	0.00	0.00	3.41
2599	14595	3.192844	GGAGAGTCGAGTACAACATCCAA	59.807	47.826	0.00	0.00	0.00	3.53
2734	14730	1.372997	GCTCGACAAGAACGGCAGA	60.373	57.895	0.00	0.00	0.00	4.26
2902	14898	0.669625	GCACCCTCAACTACACGGTC	60.670	60.000	0.00	0.00	0.00	4.79
2996	14992	1.855213	CTACCCGTCGTTCGTGGTGA	61.855	60.000	17.56	8.03	40.97	4.02
3005	15001	1.493772	GTTCGTGGTGATGTTCGACA	58.506	50.000	0.00	0.00	32.14	4.35
3012	15008	1.079197	TGATGTTCGACAGCCGCAT	60.079	52.632	0.00	0.00	32.69	4.73
3052	15048	1.671742	GACGGTGACCATGGTGTCT	59.328	57.895	25.52	0.00	36.21	3.41
3392	15432	8.040132	AGAGTTGATCTGTAATGAAGAAGAAGG	58.960	37.037	0.00	0.00	36.69	3.46
3514	15745	7.664082	CTTCATGGAATGGAGTCATACATAC	57.336	40.000	0.00	0.00	45.26	2.39
3515	15746	7.379059	TTCATGGAATGGAGTCATACATACT	57.621	36.000	0.00	0.00	46.73	2.12
3516	15747	8.491045	TTCATGGAATGGAGTCATACATACTA	57.509	34.615	0.00	0.00	46.73	1.82
3517	15748	7.896811	TCATGGAATGGAGTCATACATACTAC	58.103	38.462	0.00	0.00	46.73	2.73
3518	15749	7.508977	TCATGGAATGGAGTCATACATACTACA	59.491	37.037	0.00	0.00	46.73	2.74
3519	15750	7.290110	TGGAATGGAGTCATACATACTACAG	57.710	40.000	0.00	0.00	41.06	2.74
3592	15836	3.862877	TGGCTGACCATGCATATTACT	57.137	42.857	0.00	0.00	42.67	2.24
3602	15846	6.128486	ACCATGCATATTACTTTGGTGATGA	58.872	36.000	0.00	0.00	36.18	2.92
3603	15847	6.779049	ACCATGCATATTACTTTGGTGATGAT	59.221	34.615	0.00	0.00	36.18	2.45
3604	15848	7.088272	CCATGCATATTACTTTGGTGATGATG	58.912	38.462	0.00	0.00	0.00	3.07
3696	16287	7.009265	CGTCATACGTCTTAACTTGTTGATGAT	59.991	37.037	0.00	0.00	36.74	2.45
3762	16353	5.247862	TGGATCATTTCATCATATCCACCG	58.752	41.667	0.00	0.00	40.84	4.94
3795	16386	6.240549	AGGGTGTTAGAAGTATTGGATCAG	57.759	41.667	0.00	0.00	0.00	2.90
3806	16397	9.941325	AGAAGTATTGGATCAGTTCATCATATC	57.059	33.333	0.00	0.00	0.00	1.63
3820	16411	6.335471	TCATCATATCCACCATTGATTTGC	57.665	37.500	0.00	0.00	0.00	3.68
3834	16425	7.067494	ACCATTGATTTGCAATACTACTCCTTC	59.933	37.037	0.00	0.00	45.23	3.46
4010	16657	2.297701	GTCTTGTTCACTTTCCTGGCA	58.702	47.619	0.00	0.00	0.00	4.92
4083	16730	1.327690	GGGGTGTATGGCTCGTCTCA	61.328	60.000	0.00	0.00	0.00	3.27
4089	16736	1.134965	GTATGGCTCGTCTCAGCAACT	60.135	52.381	0.00	0.00	41.65	3.16
4095	16742	2.093467	GCTCGTCTCAGCAACTCATTTC	59.907	50.000	0.00	0.00	39.43	2.17
4112	16759	2.057137	TTCCATGAGTTGGGCTATGC	57.943	50.000	0.00	0.00	46.45	3.14
4197	16844	2.747436	TGCTACTGCTCGAATGCTATG	58.253	47.619	0.00	0.00	40.48	2.23
4249	16897	5.112129	AGTTGTTGGGGATATAACCTCAC	57.888	43.478	0.06	0.00	40.44	3.51
4322	16971	1.337384	ACACGAGATGGGCTATGGCA	61.337	55.000	2.58	0.00	40.87	4.92

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	4.569943	ACACTACTCCAGTACAAATGCTG	58.430	43.478	0.00	0.00	38.23	4.41
43	44	3.432252	GCTCCACACAACATGTACACTAC	59.568	47.826	0.00	0.00	40.64	2.73
44	45	3.323691	AGCTCCACACAACATGTACACTA	59.676	43.478	0.00	0.00	40.64	2.74
46	47	2.494059	AGCTCCACACAACATGTACAC	58.506	47.619	0.00	0.00	40.64	2.90
47	48	2.928801	AGCTCCACACAACATGTACA	57.071	45.000	0.00	0.00	40.64	2.90
48	49	4.188247	TCTAGCTCCACACAACATGTAC	57.812	45.455	0.00	0.00	40.64	2.90
49	50	4.882842	TTCTAGCTCCACACAACATGTA	57.117	40.909	0.00	0.00	40.64	2.29
50	51	3.769739	TTCTAGCTCCACACAACATGT	57.230	42.857	0.00	0.00	44.81	3.21
51	52	3.814842	TGTTTCTAGCTCCACACAACATG	59.185	43.478	0.00	0.00	0.00	3.21
53	54	3.552132	TGTTTCTAGCTCCACACAACA	57.448	42.857	0.00	0.00	0.00	3.33
56	57	2.438021	AGGTTGTTTCTAGCTCCACACA	59.562	45.455	0.00	0.00	0.00	3.72
68	69	1.849097	ACGACGACTGAGGTTGTTTC	58.151	50.000	0.00	0.00	39.93	2.78
79	80	2.035312	ACCTGCCCTACGACGACT	59.965	61.111	0.00	0.00	0.00	4.18
122	125	7.916914	TCCAGGCTATTCAGTAAAAGTAAAC	57.083	36.000	0.00	0.00	0.00	2.01
185	192	6.157211	AGTACTTTTGATCTGTACTCAACGG	58.843	40.000	12.26	0.00	41.86	4.44
300	307	7.879677	TCAGTCTTGAACAATGTGATTACTGAT	59.120	33.333	11.96	0.00	35.85	2.90
379	437	0.803117	GCCAAGACGTAAAGAAGCCC	59.197	55.000	0.00	0.00	0.00	5.19
397	455	7.409697	CCTAAGTAATACAACATCACATGTGC	58.590	38.462	21.38	2.36	44.07	4.57
416	474	3.640967	TCATGCAAAACAAAGCCCTAAGT	59.359	39.130	0.00	0.00	0.00	2.24
455	513	1.067364	TGCAGAAACCGTCGAGTTACA	59.933	47.619	0.00	0.00	0.00	2.41
467	525	1.507141	CCAGTCCGTGGTGCAGAAAC	61.507	60.000	0.00	0.00	42.17	2.78
525	2225	5.280654	TCCACCGAGTTACACTACTTTTT	57.719	39.130	0.00	0.00	0.00	1.94
527	2227	3.257624	CCTCCACCGAGTTACACTACTTT	59.742	47.826	0.00	0.00	33.93	2.66
528	2228	2.824341	CCTCCACCGAGTTACACTACTT	59.176	50.000	0.00	0.00	33.93	2.24
549	3117	0.675633	TTCCTGAAGCTTTGCCTTGC	59.324	50.000	0.00	0.00	0.00	4.01
580	3148	1.547372	TGAAACGGCCTCCACTACTAC	59.453	52.381	0.00	0.00	0.00	2.73
607	3175	1.059942	GGCTTGCGAACGAAAAATGG	58.940	50.000	0.00	0.00	0.00	3.16
766	3334	3.922375	CTTCCCTCCAGACTAATCCTCT	58.078	50.000	0.00	0.00	0.00	3.69
1158	5974	0.324614	TGTGCGAGGTGGAATGATGT	59.675	50.000	0.00	0.00	0.00	3.06
1163	5979	0.249398	GTAGGTGTGCGAGGTGGAAT	59.751	55.000	0.00	0.00	0.00	3.01
1211	6027	0.391597	GAGGGTGTCGAACTTGGACA	59.608	55.000	2.70	2.70	41.82	4.02
1777	9889	0.168128	GGAATGCACGCCTTGTACAC	59.832	55.000	0.00	0.00	0.00	2.90
1983	10879	1.112113	GTTATGAGTCTCTCGGGCCA	58.888	55.000	4.39	0.00	32.35	5.36
1991	10887	2.000447	GCCACGTTGGTTATGAGTCTC	59.000	52.381	6.02	0.00	40.46	3.36
1994	10890	0.322187	GGGCCACGTTGGTTATGAGT	60.322	55.000	4.39	0.00	40.46	3.41
1995	10891	1.029947	GGGGCCACGTTGGTTATGAG	61.030	60.000	4.39	0.00	40.46	2.90
2162	11100	1.452651	CCTTGCCCATGACATCGCT	60.453	57.895	0.00	0.00	0.00	4.93
2163	11101	1.718757	GACCTTGCCCATGACATCGC	61.719	60.000	0.00	0.00	0.00	4.58
2165	11103	0.392998	ACGACCTTGCCCATGACATC	60.393	55.000	0.00	0.00	0.00	3.06
2222	11175	2.659610	GCCAGCTCTCTCCACGTT	59.340	61.111	0.00	0.00	0.00	3.99
2325	11278	4.147449	CGCCGGTGGAGCTGATGA	62.147	66.667	7.26	0.00	0.00	2.92
2483	14479	1.227089	CGTCCGGCTTGAGGATCTG	60.227	63.158	0.00	0.00	40.30	2.90
2546	14542	3.083997	GGAGTCAGATGGCGGGGT	61.084	66.667	0.00	0.00	0.00	4.95
2598	14594	2.812499	CCATCGACGTCCCCGATT	59.188	61.111	10.58	0.00	43.33	3.34
2599	14595	3.912907	GCCATCGACGTCCCCGAT	61.913	66.667	10.58	7.42	46.32	4.18
2641	14637	1.222936	CCGCTTCTTGATCAGGGCT	59.777	57.895	4.83	0.00	0.00	5.19
2734	14730	2.573869	CCGCTGTCCACGATGTCT	59.426	61.111	0.00	0.00	0.00	3.41
2902	14898	1.714414	GAACTGCTGCATCTGCTCG	59.286	57.895	1.31	0.00	42.66	5.03
2930	14926	1.227409	TCCTCGCGCACTTGTTCAA	60.227	52.632	8.75	0.00	0.00	2.69
2996	14992	1.815421	GGATGCGGCTGTCGAACAT	60.815	57.895	5.55	0.00	42.43	2.71
3061	15057	0.522180	CCGTCACGTTGTAGCTCTCT	59.478	55.000	0.00	0.00	0.00	3.10
3392	15432	6.792326	TCATCACAATGAAATGCTGATTCTC	58.208	36.000	0.00	0.00	38.97	2.87
3516	15747	8.193438	GGTCTACGGATTAAAACTATGTACTGT	58.807	37.037	0.00	0.00	0.00	3.55
3517	15748	7.650903	GGGTCTACGGATTAAAACTATGTACTG	59.349	40.741	0.00	0.00	0.00	2.74
3518	15749	7.469181	CGGGTCTACGGATTAAAACTATGTACT	60.469	40.741	0.00	0.00	0.00	2.73
3519	15750	6.638468	CGGGTCTACGGATTAAAACTATGTAC	59.362	42.308	0.00	0.00	0.00	2.90
3592	15836	2.819019	ACATGAACGCATCATCACCAAA	59.181	40.909	0.00	0.00	45.91	3.28
3602	15846	3.873910	ACCTAGCTAAACATGAACGCAT	58.126	40.909	0.00	0.00	34.29	4.73
3603	15847	3.328382	ACCTAGCTAAACATGAACGCA	57.672	42.857	0.00	0.00	0.00	5.24
3604	15848	4.503370	GTCTACCTAGCTAAACATGAACGC	59.497	45.833	0.00	0.00	0.00	4.84
3762	16353	8.788325	ATACTTCTAACACCCTTGTAATCAAC	57.212	34.615	0.00	0.00	33.55	3.18
3795	16386	6.643770	GCAAATCAATGGTGGATATGATGAAC	59.356	38.462	0.00	0.00	33.06	3.18
3806	16397	6.455360	AGTAGTATTGCAAATCAATGGTGG	57.545	37.500	1.71	0.00	44.62	4.61
3820	16411	4.939052	ATGGGACGAAGGAGTAGTATTG	57.061	45.455	0.00	0.00	0.00	1.90
3834	16425	6.780706	AAAACGCTCTTATATTATGGGACG	57.219	37.500	0.00	0.00	0.00	4.79
4010	16657	2.234661	TCTCAGGCGTGATGATCAAACT	59.765	45.455	9.94	0.00	30.18	2.66
4112	16759	6.662414	AAAAAGAAAAGAAAAAGAAGCCCG	57.338	33.333	0.00	0.00	0.00	6.13
4197	16844	0.890996	CCCAGCCCACAAAGTCACTC	60.891	60.000	0.00	0.00	0.00	3.51
4249	16897	0.872881	CTGAACGGGCGGGTTATACG	60.873	60.000	0.00	0.00	0.00	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.