Multiple sequence alignment - TraesCS5D01G194000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G194000 chr5D 100.000 6701 0 0 1 6701 298056066 298049366 0.000000e+00 12375.0
1 TraesCS5D01G194000 chr5D 94.444 36 1 1 5767 5801 553674719 553674754 3.000000e-03 54.7
2 TraesCS5D01G194000 chr5B 94.721 2690 84 28 754 3431 338716649 338714006 0.000000e+00 4128.0
3 TraesCS5D01G194000 chr5B 96.000 1125 23 3 4145 5269 338714011 338712909 0.000000e+00 1808.0
4 TraesCS5D01G194000 chr5B 90.145 761 46 16 13 758 338717419 338716673 0.000000e+00 963.0
5 TraesCS5D01G194000 chr5B 90.871 723 48 5 3432 4145 196310428 196311141 0.000000e+00 953.0
6 TraesCS5D01G194000 chr5B 90.868 668 45 4 3485 4145 196307854 196308512 0.000000e+00 881.0
7 TraesCS5D01G194000 chr5B 93.708 445 20 3 5333 5776 338712908 338712471 0.000000e+00 660.0
8 TraesCS5D01G194000 chr5B 88.302 530 44 12 5827 6342 338712466 338711941 2.650000e-173 619.0
9 TraesCS5D01G194000 chr5B 88.923 325 22 7 6380 6701 338711958 338711645 8.150000e-104 388.0
10 TraesCS5D01G194000 chr5B 97.826 46 1 0 609 654 626717666 626717711 5.570000e-11 80.5
11 TraesCS5D01G194000 chr5B 97.826 46 1 0 609 654 629787113 629787158 5.570000e-11 80.5
12 TraesCS5D01G194000 chr5A 93.312 1869 65 21 1582 3431 400875780 400877607 0.000000e+00 2704.0
13 TraesCS5D01G194000 chr5A 94.966 1629 55 10 4145 5771 400877602 400879205 0.000000e+00 2529.0
14 TraesCS5D01G194000 chr5A 97.833 600 13 0 994 1593 400866861 400867460 0.000000e+00 1037.0
15 TraesCS5D01G194000 chr5A 89.617 626 45 10 1 616 400866192 400866807 0.000000e+00 778.0
16 TraesCS5D01G194000 chr5A 84.229 279 16 11 5825 6098 400879211 400879466 5.190000e-61 246.0
17 TraesCS5D01G194000 chr5A 79.184 245 33 10 6108 6335 400880950 400881193 3.240000e-33 154.0
18 TraesCS5D01G194000 chr5A 94.186 86 5 0 6612 6697 400881747 400881832 1.520000e-26 132.0
19 TraesCS5D01G194000 chr5A 97.561 41 1 0 609 649 539508444 539508484 3.350000e-08 71.3
20 TraesCS5D01G194000 chr6D 98.881 715 8 0 3432 4146 65047165 65047879 0.000000e+00 1277.0
21 TraesCS5D01G194000 chr6D 98.338 722 6 1 3430 4145 65044535 65045256 0.000000e+00 1262.0
22 TraesCS5D01G194000 chr3D 98.739 714 9 0 3432 4145 437389507 437390220 0.000000e+00 1269.0
23 TraesCS5D01G194000 chr3D 98.601 715 9 1 3431 4145 437386881 437387594 0.000000e+00 1264.0
24 TraesCS5D01G194000 chr3D 90.331 724 49 10 3432 4145 302926163 302925451 0.000000e+00 929.0
25 TraesCS5D01G194000 chr1D 92.244 722 38 6 3430 4145 59560989 59560280 0.000000e+00 1007.0
26 TraesCS5D01G194000 chr1D 92.028 715 37 7 3438 4145 59558361 59557660 0.000000e+00 987.0
27 TraesCS5D01G194000 chr1D 100.000 46 0 0 609 654 81373009 81373054 1.200000e-12 86.1
28 TraesCS5D01G194000 chr3A 86.301 730 68 24 3432 4145 143501619 143500906 0.000000e+00 765.0
29 TraesCS5D01G194000 chr3A 85.656 732 72 28 3431 4145 143499000 143498285 0.000000e+00 739.0
30 TraesCS5D01G194000 chr3A 85.034 735 78 24 3431 4148 414330668 414329949 0.000000e+00 719.0
31 TraesCS5D01G194000 chr3B 88.284 606 53 12 3554 4148 147646348 147645750 0.000000e+00 710.0
32 TraesCS5D01G194000 chr2B 88.014 584 49 13 3575 4145 54731254 54730679 0.000000e+00 671.0
33 TraesCS5D01G194000 chr2B 96.875 64 2 0 609 672 796806516 796806453 2.560000e-19 108.0
34 TraesCS5D01G194000 chrUn 97.826 46 1 0 609 654 109026094 109026139 5.570000e-11 80.5
35 TraesCS5D01G194000 chr6B 97.561 41 1 0 607 647 51301423 51301463 3.350000e-08 71.3
36 TraesCS5D01G194000 chr2A 93.478 46 3 0 609 654 235675547 235675502 1.210000e-07 69.4
37 TraesCS5D01G194000 chr2D 100.000 29 0 0 5773 5801 637152145 637152117 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G194000 chr5D 298049366 298056066 6700 True 12375.000000 12375 100.0000 1 6701 1 chr5D.!!$R1 6700
1 TraesCS5D01G194000 chr5B 338711645 338717419 5774 True 1427.666667 4128 91.9665 13 6701 6 chr5B.!!$R1 6688
2 TraesCS5D01G194000 chr5B 196307854 196311141 3287 False 917.000000 953 90.8695 3432 4145 2 chr5B.!!$F3 713
3 TraesCS5D01G194000 chr5A 400875780 400881832 6052 False 1153.000000 2704 89.1754 1582 6697 5 chr5A.!!$F3 5115
4 TraesCS5D01G194000 chr5A 400866192 400867460 1268 False 907.500000 1037 93.7250 1 1593 2 chr5A.!!$F2 1592
5 TraesCS5D01G194000 chr6D 65044535 65047879 3344 False 1269.500000 1277 98.6095 3430 4146 2 chr6D.!!$F1 716
6 TraesCS5D01G194000 chr3D 437386881 437390220 3339 False 1266.500000 1269 98.6700 3431 4145 2 chr3D.!!$F1 714
7 TraesCS5D01G194000 chr3D 302925451 302926163 712 True 929.000000 929 90.3310 3432 4145 1 chr3D.!!$R1 713
8 TraesCS5D01G194000 chr1D 59557660 59560989 3329 True 997.000000 1007 92.1360 3430 4145 2 chr1D.!!$R1 715
9 TraesCS5D01G194000 chr3A 143498285 143501619 3334 True 752.000000 765 85.9785 3431 4145 2 chr3A.!!$R2 714
10 TraesCS5D01G194000 chr3A 414329949 414330668 719 True 719.000000 719 85.0340 3431 4148 1 chr3A.!!$R1 717
11 TraesCS5D01G194000 chr3B 147645750 147646348 598 True 710.000000 710 88.2840 3554 4148 1 chr3B.!!$R1 594
12 TraesCS5D01G194000 chr2B 54730679 54731254 575 True 671.000000 671 88.0140 3575 4145 1 chr2B.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 372 0.243365 TGCCGATTGCGCATTTTCTT 59.757 45.000 12.75 0.0 45.60 2.52 F
494 520 0.538584 CTGTGTGGCTATCTGCTCCA 59.461 55.000 0.00 0.0 42.39 3.86 F
1918 1976 1.449246 GAGCGCTGAGTCCATTGCT 60.449 57.895 18.48 0.0 35.99 3.91 F
2951 3016 0.536006 GGTCCAAGTCTTGCTGCACT 60.536 55.000 0.00 0.0 0.00 4.40 F
4409 12424 0.613777 CAACCTAGACGCTCCCCTTT 59.386 55.000 0.00 0.0 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 2084 1.353091 GATAGCCCTTCCCCTACCTG 58.647 60.000 0.00 0.0 0.00 4.00 R
2476 2537 2.122547 AGTGACCCCACCGGAACT 60.123 61.111 9.46 0.0 44.22 3.01 R
3267 3348 2.880443 CATGCCATTATTAGCCAGGGT 58.120 47.619 0.00 0.0 0.00 4.34 R
4692 12707 1.861982 AGAGGCATACCAGTTACCGT 58.138 50.000 0.00 0.0 39.06 4.83 R
6271 15789 0.535102 CACTTTGAGGGCAACGAGGT 60.535 55.000 0.00 0.0 32.79 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.001503 CCACTCCCTCTCCTGCTCT 59.998 63.158 0.00 0.00 0.00 4.09
53 54 1.042559 CCACTCCCTCTCCTGCTCTC 61.043 65.000 0.00 0.00 0.00 3.20
56 57 1.938596 TCCCTCTCCTGCTCTCCCT 60.939 63.158 0.00 0.00 0.00 4.20
103 104 3.114616 CGCAGCTTGACACCTCCG 61.115 66.667 0.00 0.00 0.00 4.63
230 232 4.961511 TGCAGACACCACGCGACC 62.962 66.667 15.93 0.00 0.00 4.79
318 324 0.673985 TGTCGTCACTCACCTTCCAG 59.326 55.000 0.00 0.00 0.00 3.86
352 358 3.071206 GGAGACTGCCTCTGCCGA 61.071 66.667 0.00 0.00 41.66 5.54
366 372 0.243365 TGCCGATTGCGCATTTTCTT 59.757 45.000 12.75 0.00 45.60 2.52
478 504 2.102588 GTCCCACAGAACACTGTACTGT 59.897 50.000 0.00 0.00 42.09 3.55
491 517 2.167281 CTGTACTGTGTGGCTATCTGCT 59.833 50.000 0.00 0.00 42.39 4.24
493 519 0.539051 ACTGTGTGGCTATCTGCTCC 59.461 55.000 0.00 0.00 42.39 4.70
494 520 0.538584 CTGTGTGGCTATCTGCTCCA 59.461 55.000 0.00 0.00 42.39 3.86
521 547 2.356382 CTCTACCGCTACTTCAGGACAG 59.644 54.545 0.00 0.00 0.00 3.51
586 612 2.548875 CTGACAGGCAATCTACTCTGC 58.451 52.381 0.00 0.00 37.86 4.26
630 656 2.850568 ACTCCCTCCGTCCCAAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
640 666 5.183140 CCGTCCCAAAATAATTGACTCAACT 59.817 40.000 0.00 0.00 0.00 3.16
641 667 6.294508 CCGTCCCAAAATAATTGACTCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
642 668 7.145323 CGTCCCAAAATAATTGACTCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
643 669 7.114811 CGTCCCAAAATAATTGACTCAACTTTG 59.885 37.037 0.00 2.93 0.00 2.77
644 670 7.926018 GTCCCAAAATAATTGACTCAACTTTGT 59.074 33.333 0.00 0.00 0.00 2.83
645 671 9.137459 TCCCAAAATAATTGACTCAACTTTGTA 57.863 29.630 0.00 0.00 0.00 2.41
646 672 9.191995 CCCAAAATAATTGACTCAACTTTGTAC 57.808 33.333 0.00 0.00 0.00 2.90
647 673 9.965824 CCAAAATAATTGACTCAACTTTGTACT 57.034 29.630 0.00 0.00 0.00 2.73
731 757 7.378966 TCCATGTGTTCTTACTTCTTACTCAG 58.621 38.462 0.00 0.00 0.00 3.35
762 816 8.593492 AATAAAGTTTTTGTTCTGAATCTGGC 57.407 30.769 0.00 0.00 0.00 4.85
784 838 2.285083 CCGACCGCCAAATGAATAAGA 58.715 47.619 0.00 0.00 0.00 2.10
796 850 9.455847 GCCAAATGAATAAGATTAATCAGTCAC 57.544 33.333 17.56 6.62 0.00 3.67
960 1018 5.964958 ATGGTTCGACAGTTTTGATCAAT 57.035 34.783 9.40 0.00 0.00 2.57
961 1019 5.766150 TGGTTCGACAGTTTTGATCAATT 57.234 34.783 9.40 0.00 0.00 2.32
998 1056 8.690203 TTCAGTGATCTTTCTTGGAATTTACA 57.310 30.769 0.00 0.00 0.00 2.41
1039 1097 3.497262 CCTTTCCTACCGTTTTCACTCAC 59.503 47.826 0.00 0.00 0.00 3.51
1257 1315 3.071312 TGCTGCAAAACCCAGAAATGATT 59.929 39.130 0.00 0.00 32.03 2.57
1258 1316 4.067192 GCTGCAAAACCCAGAAATGATTT 58.933 39.130 0.00 0.00 32.03 2.17
1290 1348 5.359009 AGAGATTGTAAATGCACTCAATGGG 59.641 40.000 10.64 0.00 31.87 4.00
1370 1428 4.937015 CACCACATATCGCATATTCATGGA 59.063 41.667 0.00 0.00 32.36 3.41
1653 1711 3.577848 GGAGGAGTGCTGACATCATCTAT 59.422 47.826 0.00 0.00 0.00 1.98
1657 1715 4.039004 GGAGTGCTGACATCATCTATCAGT 59.961 45.833 2.72 0.00 41.62 3.41
1677 1735 3.386078 AGTCACTCAAACTCTGAAGCTCA 59.614 43.478 0.00 0.00 32.17 4.26
1680 1738 3.740321 CACTCAAACTCTGAAGCTCAGTC 59.260 47.826 11.37 0.00 44.58 3.51
1688 1746 4.879197 TCTGAAGCTCAGTCAGAATTCA 57.121 40.909 13.09 0.00 46.57 2.57
1689 1747 5.417754 TCTGAAGCTCAGTCAGAATTCAT 57.582 39.130 13.09 0.00 46.57 2.57
1690 1748 5.417811 TCTGAAGCTCAGTCAGAATTCATC 58.582 41.667 13.09 0.00 46.57 2.92
1691 1749 5.046807 TCTGAAGCTCAGTCAGAATTCATCA 60.047 40.000 13.09 0.00 46.57 3.07
1692 1750 5.554070 TGAAGCTCAGTCAGAATTCATCAA 58.446 37.500 8.44 0.00 30.95 2.57
1693 1751 6.178324 TGAAGCTCAGTCAGAATTCATCAAT 58.822 36.000 8.44 0.00 30.95 2.57
1694 1752 6.657966 TGAAGCTCAGTCAGAATTCATCAATT 59.342 34.615 8.44 0.00 34.70 2.32
1695 1753 7.176165 TGAAGCTCAGTCAGAATTCATCAATTT 59.824 33.333 8.44 0.00 31.94 1.82
1696 1754 6.853720 AGCTCAGTCAGAATTCATCAATTTG 58.146 36.000 8.44 0.00 31.94 2.32
1697 1755 6.034591 GCTCAGTCAGAATTCATCAATTTGG 58.965 40.000 8.44 0.00 31.94 3.28
1698 1756 6.349944 GCTCAGTCAGAATTCATCAATTTGGT 60.350 38.462 8.44 0.00 31.94 3.67
1699 1757 7.149569 TCAGTCAGAATTCATCAATTTGGTC 57.850 36.000 8.44 0.00 31.94 4.02
1700 1758 6.944290 TCAGTCAGAATTCATCAATTTGGTCT 59.056 34.615 8.44 0.00 31.94 3.85
1701 1759 8.102676 TCAGTCAGAATTCATCAATTTGGTCTA 58.897 33.333 8.44 0.00 31.94 2.59
1702 1760 8.180267 CAGTCAGAATTCATCAATTTGGTCTAC 58.820 37.037 8.44 0.00 31.94 2.59
1703 1761 7.065085 AGTCAGAATTCATCAATTTGGTCTACG 59.935 37.037 8.44 0.00 31.94 3.51
1704 1762 6.878923 TCAGAATTCATCAATTTGGTCTACGT 59.121 34.615 8.44 0.00 31.94 3.57
1705 1763 8.038351 TCAGAATTCATCAATTTGGTCTACGTA 58.962 33.333 8.44 0.00 31.94 3.57
1706 1764 8.116753 CAGAATTCATCAATTTGGTCTACGTAC 58.883 37.037 8.44 0.00 31.94 3.67
1707 1765 8.041323 AGAATTCATCAATTTGGTCTACGTACT 58.959 33.333 8.44 0.00 31.94 2.73
1708 1766 8.561738 AATTCATCAATTTGGTCTACGTACTT 57.438 30.769 0.00 0.00 0.00 2.24
1709 1767 9.661563 AATTCATCAATTTGGTCTACGTACTTA 57.338 29.630 0.00 0.00 0.00 2.24
1710 1768 8.470040 TTCATCAATTTGGTCTACGTACTTAC 57.530 34.615 0.00 0.00 0.00 2.34
1711 1769 7.833786 TCATCAATTTGGTCTACGTACTTACT 58.166 34.615 0.00 0.00 0.00 2.24
1790 1848 3.505386 AGTGGCCACAACATTATTTCCA 58.495 40.909 36.39 0.00 0.00 3.53
1799 1857 8.778358 GCCACAACATTATTTCCAAAACATTTA 58.222 29.630 0.00 0.00 0.00 1.40
1918 1976 1.449246 GAGCGCTGAGTCCATTGCT 60.449 57.895 18.48 0.00 35.99 3.91
2026 2084 6.840780 TGTGTACTACTAGGTTTTAGGGAC 57.159 41.667 0.00 0.00 0.00 4.46
2085 2143 9.073475 GATAGAAGAGTTGCTCTCCTAATTCTA 57.927 37.037 14.46 14.46 40.28 2.10
2330 2391 5.304686 TCCAAAGTACAACTTCATGTCCT 57.695 39.130 0.00 0.00 37.47 3.85
2547 2608 5.586243 CCTTGTATTCATGAACTCAACGGAT 59.414 40.000 11.07 0.00 0.00 4.18
2554 2615 3.868757 TGAACTCAACGGATCAGGTAG 57.131 47.619 0.00 0.00 0.00 3.18
2584 2645 2.029649 AGCACCAACTCAACATCAATGC 60.030 45.455 0.00 0.00 0.00 3.56
2692 2753 4.881273 ACTACAGTCTGCATCACAAACAAA 59.119 37.500 0.00 0.00 0.00 2.83
2732 2793 1.762370 CCTGCAGGGTTTTCAGGTTTT 59.238 47.619 26.14 0.00 41.76 2.43
2841 2902 8.046708 AGGTACATAGTATGAATGTGCTTTTGA 58.953 33.333 17.13 0.00 39.19 2.69
2842 2903 8.673711 GGTACATAGTATGAATGTGCTTTTGAA 58.326 33.333 17.13 0.00 39.19 2.69
2845 2906 9.013229 ACATAGTATGAATGTGCTTTTGAAAGA 57.987 29.630 17.13 0.00 35.88 2.52
2846 2907 9.844790 CATAGTATGAATGTGCTTTTGAAAGAA 57.155 29.630 3.91 0.00 38.28 2.52
2849 2910 9.252962 AGTATGAATGTGCTTTTGAAAGAAAAG 57.747 29.630 7.63 0.00 38.28 2.27
2850 2911 9.248291 GTATGAATGTGCTTTTGAAAGAAAAGA 57.752 29.630 10.38 0.00 39.04 2.52
2851 2912 8.721019 ATGAATGTGCTTTTGAAAGAAAAGAA 57.279 26.923 10.38 0.00 39.04 2.52
2939 3004 7.441157 TCGCAAGTATATTCTTAATGGTCCAAG 59.559 37.037 0.00 0.00 39.48 3.61
2945 3010 5.904362 ATTCTTAATGGTCCAAGTCTTGC 57.096 39.130 7.09 0.00 0.00 4.01
2951 3016 0.536006 GGTCCAAGTCTTGCTGCACT 60.536 55.000 0.00 0.00 0.00 4.40
2955 3020 2.358898 TCCAAGTCTTGCTGCACTTTTC 59.641 45.455 0.00 0.00 30.06 2.29
3064 3144 6.375455 ACTGATGCTGTTACCCTTTTAAGATG 59.625 38.462 0.00 0.00 0.00 2.90
3068 3148 5.007682 GCTGTTACCCTTTTAAGATGACCA 58.992 41.667 0.00 0.00 0.00 4.02
3113 3193 3.098377 TGGGCATTACATCAGCAAACAT 58.902 40.909 0.00 0.00 0.00 2.71
3116 3196 2.861935 GCATTACATCAGCAAACATGCC 59.138 45.455 0.00 0.00 34.90 4.40
3267 3348 8.747471 TGGCATATGTAAATCAAGTTTCATCAA 58.253 29.630 4.29 0.00 0.00 2.57
3425 3507 5.641783 TTGCATGCTGCTTGTTAAAGATA 57.358 34.783 20.33 0.00 45.31 1.98
3426 3508 5.239359 TGCATGCTGCTTGTTAAAGATAG 57.761 39.130 20.33 0.00 45.31 2.08
3427 3509 4.943093 TGCATGCTGCTTGTTAAAGATAGA 59.057 37.500 20.33 0.00 45.31 1.98
3428 3510 5.591472 TGCATGCTGCTTGTTAAAGATAGAT 59.409 36.000 20.33 0.00 45.31 1.98
3972 9367 3.491598 CTCCACGTTGCCTTGGGGT 62.492 63.158 0.00 0.00 33.25 4.95
4302 12317 4.386954 GCAAAAGGAGCACAATCTTAAAGC 59.613 41.667 0.00 0.00 0.00 3.51
4355 12370 7.931407 TGAATACTGTATTGAGCCGAAATGTAT 59.069 33.333 17.21 0.00 0.00 2.29
4368 12383 7.896811 AGCCGAAATGTATATGTCTAGAATCA 58.103 34.615 0.00 0.00 0.00 2.57
4399 12414 3.838244 TGGCATACATCCAACCTAGAC 57.162 47.619 0.00 0.00 0.00 2.59
4406 12421 1.049289 ATCCAACCTAGACGCTCCCC 61.049 60.000 0.00 0.00 0.00 4.81
4409 12424 0.613777 CAACCTAGACGCTCCCCTTT 59.386 55.000 0.00 0.00 0.00 3.11
4410 12425 1.003233 CAACCTAGACGCTCCCCTTTT 59.997 52.381 0.00 0.00 0.00 2.27
4411 12426 1.359168 ACCTAGACGCTCCCCTTTTT 58.641 50.000 0.00 0.00 0.00 1.94
4437 12452 5.528043 TTTGGAAATCTTTGCAGCAGTAA 57.472 34.783 0.00 0.00 39.65 2.24
4692 12707 3.221771 CCAAATGGGAGTTTGTCTGACA 58.778 45.455 6.36 6.36 40.01 3.58
4740 12755 7.687941 AGTTGTTCTTATAGTTCATTGTGGG 57.312 36.000 0.00 0.00 0.00 4.61
4811 12826 1.172812 GGCACAGGAACAAGGGTGTC 61.173 60.000 0.00 0.00 36.80 3.67
4941 12956 9.103861 CCACAAAGGATTCTCTTAGATTCTTAC 57.896 37.037 0.00 0.00 41.22 2.34
5002 13017 2.818274 GTCCGGATGGGCGTGAAC 60.818 66.667 7.81 0.00 35.24 3.18
5097 13113 8.900781 ACCTCATGTATTTTCTTCATCTTCATG 58.099 33.333 0.00 0.00 33.74 3.07
5168 13184 7.400599 TGTTATTGACCGTATCTACTCAGTT 57.599 36.000 0.00 0.00 0.00 3.16
5275 13291 7.123697 AGGTGATGTAAGTACATGTGCTAACTA 59.876 37.037 17.28 3.36 46.20 2.24
5276 13292 7.222224 GGTGATGTAAGTACATGTGCTAACTAC 59.778 40.741 17.28 15.35 46.20 2.73
5277 13293 7.974501 GTGATGTAAGTACATGTGCTAACTACT 59.025 37.037 17.28 3.00 46.20 2.57
5278 13294 7.973944 TGATGTAAGTACATGTGCTAACTACTG 59.026 37.037 17.28 0.00 46.20 2.74
5279 13295 7.223260 TGTAAGTACATGTGCTAACTACTGT 57.777 36.000 17.28 1.41 0.00 3.55
5280 13296 7.310664 TGTAAGTACATGTGCTAACTACTGTC 58.689 38.462 17.28 4.18 0.00 3.51
5281 13297 5.326200 AGTACATGTGCTAACTACTGTCC 57.674 43.478 15.40 0.00 0.00 4.02
5282 13298 5.017490 AGTACATGTGCTAACTACTGTCCT 58.983 41.667 15.40 0.00 0.00 3.85
5283 13299 4.457834 ACATGTGCTAACTACTGTCCTC 57.542 45.455 0.00 0.00 0.00 3.71
5284 13300 4.090090 ACATGTGCTAACTACTGTCCTCT 58.910 43.478 0.00 0.00 0.00 3.69
5285 13301 4.081972 ACATGTGCTAACTACTGTCCTCTG 60.082 45.833 0.00 0.00 0.00 3.35
5286 13302 3.763057 TGTGCTAACTACTGTCCTCTGA 58.237 45.455 0.00 0.00 0.00 3.27
5287 13303 4.149598 TGTGCTAACTACTGTCCTCTGAA 58.850 43.478 0.00 0.00 0.00 3.02
5288 13304 4.587262 TGTGCTAACTACTGTCCTCTGAAA 59.413 41.667 0.00 0.00 0.00 2.69
5289 13305 5.069914 TGTGCTAACTACTGTCCTCTGAAAA 59.930 40.000 0.00 0.00 0.00 2.29
5290 13306 5.405873 GTGCTAACTACTGTCCTCTGAAAAC 59.594 44.000 0.00 0.00 0.00 2.43
5294 13310 4.950050 ACTACTGTCCTCTGAAAACTGTG 58.050 43.478 10.09 5.31 0.00 3.66
5385 13402 8.919777 ATAGGGGCACTCAAGTAATATAAAAC 57.080 34.615 0.00 0.00 0.00 2.43
5396 13413 9.997482 TCAAGTAATATAAAACGAATTGCCTTC 57.003 29.630 0.00 0.00 0.00 3.46
5419 13436 5.469084 TCTCTATTTATGATGCTGCAGCTTG 59.531 40.000 36.61 17.13 42.66 4.01
5679 13696 0.393077 AAGGGGTGCTATCGGATTCG 59.607 55.000 0.00 0.00 37.82 3.34
5703 13720 7.013083 TCGGAGATAACTGAACCAAGATAGTAC 59.987 40.741 0.00 0.00 0.00 2.73
5704 13721 7.013464 CGGAGATAACTGAACCAAGATAGTACT 59.987 40.741 0.00 0.00 0.00 2.73
5705 13722 8.354426 GGAGATAACTGAACCAAGATAGTACTC 58.646 40.741 0.00 0.00 0.00 2.59
5706 13723 8.240267 AGATAACTGAACCAAGATAGTACTCC 57.760 38.462 0.00 0.00 0.00 3.85
5707 13724 8.062536 AGATAACTGAACCAAGATAGTACTCCT 58.937 37.037 0.00 0.00 0.00 3.69
5708 13725 6.936968 AACTGAACCAAGATAGTACTCCTT 57.063 37.500 0.00 1.31 0.00 3.36
5740 13757 0.107214 GGCCACAGATTTCATCGGGA 60.107 55.000 0.00 0.00 0.00 5.14
5753 13770 2.172483 ATCGGGATCTACATGGCGCC 62.172 60.000 22.73 22.73 0.00 6.53
5767 13784 1.771854 TGGCGCCCAGAGGATATTTAA 59.228 47.619 26.77 0.00 33.47 1.52
5768 13785 2.224523 TGGCGCCCAGAGGATATTTAAG 60.225 50.000 26.77 0.00 33.47 1.85
5769 13786 2.224548 GGCGCCCAGAGGATATTTAAGT 60.225 50.000 18.11 0.00 33.47 2.24
5770 13787 3.007614 GGCGCCCAGAGGATATTTAAGTA 59.992 47.826 18.11 0.00 33.47 2.24
5771 13788 3.995048 GCGCCCAGAGGATATTTAAGTAC 59.005 47.826 0.00 0.00 33.47 2.73
5772 13789 4.502604 GCGCCCAGAGGATATTTAAGTACA 60.503 45.833 0.00 0.00 33.47 2.90
5773 13790 5.230942 CGCCCAGAGGATATTTAAGTACAG 58.769 45.833 0.00 0.00 33.47 2.74
5774 13791 5.221461 CGCCCAGAGGATATTTAAGTACAGT 60.221 44.000 0.00 0.00 33.47 3.55
5775 13792 6.015688 CGCCCAGAGGATATTTAAGTACAGTA 60.016 42.308 0.00 0.00 33.47 2.74
5776 13793 7.153315 GCCCAGAGGATATTTAAGTACAGTAC 58.847 42.308 2.05 2.05 33.47 2.73
5777 13794 7.015389 GCCCAGAGGATATTTAAGTACAGTACT 59.985 40.741 7.48 7.48 36.30 2.73
5779 13796 9.357161 CCAGAGGATATTTAAGTACAGTACTCT 57.643 37.037 13.86 4.04 38.26 3.24
5783 13800 9.577222 AGGATATTTAAGTACAGTACTCTCTCC 57.423 37.037 13.86 12.98 38.26 3.71
5784 13801 8.505625 GGATATTTAAGTACAGTACTCTCTCCG 58.494 40.741 13.86 0.00 38.26 4.63
5785 13802 9.270640 GATATTTAAGTACAGTACTCTCTCCGA 57.729 37.037 13.86 0.00 38.26 4.55
5786 13803 9.796180 ATATTTAAGTACAGTACTCTCTCCGAT 57.204 33.333 13.86 0.00 38.26 4.18
5787 13804 7.551035 TTTAAGTACAGTACTCTCTCCGATC 57.449 40.000 13.86 0.00 38.26 3.69
5788 13805 4.075963 AGTACAGTACTCTCTCCGATCC 57.924 50.000 7.48 0.00 32.47 3.36
5789 13806 3.455177 AGTACAGTACTCTCTCCGATCCA 59.545 47.826 7.48 0.00 32.47 3.41
5790 13807 3.367646 ACAGTACTCTCTCCGATCCAA 57.632 47.619 0.00 0.00 0.00 3.53
5791 13808 3.698289 ACAGTACTCTCTCCGATCCAAA 58.302 45.455 0.00 0.00 0.00 3.28
5792 13809 4.282496 ACAGTACTCTCTCCGATCCAAAT 58.718 43.478 0.00 0.00 0.00 2.32
5793 13810 4.712337 ACAGTACTCTCTCCGATCCAAATT 59.288 41.667 0.00 0.00 0.00 1.82
5794 13811 5.892119 ACAGTACTCTCTCCGATCCAAATTA 59.108 40.000 0.00 0.00 0.00 1.40
5795 13812 6.380274 ACAGTACTCTCTCCGATCCAAATTAA 59.620 38.462 0.00 0.00 0.00 1.40
5796 13813 7.070074 ACAGTACTCTCTCCGATCCAAATTAAT 59.930 37.037 0.00 0.00 0.00 1.40
5797 13814 7.928706 CAGTACTCTCTCCGATCCAAATTAATT 59.071 37.037 0.00 0.00 0.00 1.40
5798 13815 7.928706 AGTACTCTCTCCGATCCAAATTAATTG 59.071 37.037 0.39 0.00 38.84 2.32
5799 13816 6.889198 ACTCTCTCCGATCCAAATTAATTGA 58.111 36.000 0.39 0.00 41.85 2.57
5800 13817 6.763610 ACTCTCTCCGATCCAAATTAATTGAC 59.236 38.462 0.39 0.00 41.85 3.18
5801 13818 6.055588 TCTCTCCGATCCAAATTAATTGACC 58.944 40.000 0.39 0.00 41.85 4.02
5802 13819 6.001449 TCTCCGATCCAAATTAATTGACCT 57.999 37.500 0.39 0.00 41.85 3.85
5803 13820 7.070696 TCTCTCCGATCCAAATTAATTGACCTA 59.929 37.037 0.39 0.00 41.85 3.08
5804 13821 7.217200 TCTCCGATCCAAATTAATTGACCTAG 58.783 38.462 0.39 0.00 41.85 3.02
5805 13822 5.763204 TCCGATCCAAATTAATTGACCTAGC 59.237 40.000 0.39 0.00 41.85 3.42
5806 13823 5.765182 CCGATCCAAATTAATTGACCTAGCT 59.235 40.000 0.39 0.00 41.85 3.32
5807 13824 6.073003 CCGATCCAAATTAATTGACCTAGCTC 60.073 42.308 0.39 0.00 41.85 4.09
5808 13825 6.708054 CGATCCAAATTAATTGACCTAGCTCT 59.292 38.462 0.39 0.00 41.85 4.09
5809 13826 7.872993 CGATCCAAATTAATTGACCTAGCTCTA 59.127 37.037 0.39 0.00 41.85 2.43
5810 13827 9.213799 GATCCAAATTAATTGACCTAGCTCTAG 57.786 37.037 0.39 0.00 41.85 2.43
5811 13828 8.090788 TCCAAATTAATTGACCTAGCTCTAGT 57.909 34.615 0.39 0.00 41.85 2.57
5812 13829 9.209048 TCCAAATTAATTGACCTAGCTCTAGTA 57.791 33.333 0.39 0.00 41.85 1.82
5813 13830 9.482627 CCAAATTAATTGACCTAGCTCTAGTAG 57.517 37.037 0.39 0.00 41.85 2.57
5817 13834 9.649316 ATTAATTGACCTAGCTCTAGTAGAACT 57.351 33.333 8.14 8.14 0.00 3.01
5818 13835 7.576861 AATTGACCTAGCTCTAGTAGAACTC 57.423 40.000 6.36 0.00 0.00 3.01
5819 13836 5.695424 TGACCTAGCTCTAGTAGAACTCA 57.305 43.478 6.36 0.00 0.00 3.41
5820 13837 6.255294 TGACCTAGCTCTAGTAGAACTCAT 57.745 41.667 6.36 0.00 0.00 2.90
5821 13838 6.058833 TGACCTAGCTCTAGTAGAACTCATG 58.941 44.000 6.36 0.54 0.00 3.07
5822 13839 5.381757 ACCTAGCTCTAGTAGAACTCATGG 58.618 45.833 6.36 9.94 0.00 3.66
5823 13840 4.764823 CCTAGCTCTAGTAGAACTCATGGG 59.235 50.000 6.36 0.00 0.00 4.00
5824 13841 4.528076 AGCTCTAGTAGAACTCATGGGA 57.472 45.455 0.00 0.00 0.00 4.37
5825 13842 4.469657 AGCTCTAGTAGAACTCATGGGAG 58.530 47.826 0.00 0.00 46.96 4.30
5855 13872 6.683974 ATTTAGTTGAGTATTTGCGCATCT 57.316 33.333 12.75 7.82 0.00 2.90
5872 13889 3.259902 CATCTGTGGAGCGATGATATGG 58.740 50.000 0.00 0.00 39.43 2.74
5900 13917 3.518634 ACCATTTCTTTTTGCACGTGT 57.481 38.095 18.38 0.00 0.00 4.49
5919 13936 4.234574 GTGTGTGTCACTCGTTATGATCA 58.765 43.478 0.00 0.00 43.13 2.92
5938 13955 6.700352 TGATCACTCAATCACATTGTAGACA 58.300 36.000 0.00 0.00 41.02 3.41
6007 14027 3.501828 TGTGCATCGTGCTGTTTATTCTT 59.498 39.130 10.54 0.00 45.31 2.52
6008 14028 4.693095 TGTGCATCGTGCTGTTTATTCTTA 59.307 37.500 10.54 0.00 45.31 2.10
6039 14067 8.035394 TGAAGAGAAGGTTATAGATGTGTGAAC 58.965 37.037 0.00 0.00 0.00 3.18
6101 14129 2.360483 TGCAAAAATCAAGCCGTCTGAA 59.640 40.909 0.00 0.00 0.00 3.02
6174 15676 3.050275 GGCGAAGGGCAGTGACAC 61.050 66.667 0.00 0.00 46.16 3.67
6210 15722 0.108898 CTAGTGCGTCTGAAGCAGCT 60.109 55.000 18.35 18.30 46.10 4.24
6212 15724 2.047844 TGCGTCTGAAGCAGCTCC 60.048 61.111 14.20 0.00 40.01 4.70
6213 15725 2.264166 GCGTCTGAAGCAGCTCCT 59.736 61.111 10.72 0.00 34.19 3.69
6214 15726 2.099431 GCGTCTGAAGCAGCTCCTG 61.099 63.158 10.72 0.00 34.19 3.86
6216 15728 0.037882 CGTCTGAAGCAGCTCCTGAA 60.038 55.000 0.00 0.00 32.44 3.02
6230 15746 3.811098 GCTCCTGAATCCTGATGCATCAT 60.811 47.826 28.81 14.92 36.02 2.45
6254 15772 2.590114 GGGCCTCCTACGGTGTTGT 61.590 63.158 0.84 0.00 0.00 3.32
6255 15773 1.375523 GGCCTCCTACGGTGTTGTG 60.376 63.158 0.00 0.00 0.00 3.33
6257 15775 1.375523 CCTCCTACGGTGTTGTGGC 60.376 63.158 0.00 0.00 0.00 5.01
6264 15782 2.278531 GGTGTTGTGGCACGTTGC 60.279 61.111 13.77 3.43 44.08 4.17
6277 15795 2.594592 GTTGCCTTGCCACCTCGT 60.595 61.111 0.00 0.00 0.00 4.18
6297 15815 2.136298 TGCCCTCAAAGTGTTTGACA 57.864 45.000 0.00 0.00 44.21 3.58
6305 15823 5.229887 CCTCAAAGTGTTTGACAAAATGACG 59.770 40.000 1.27 0.00 44.21 4.35
6323 15841 6.795098 ATGACGCTTAATGTTGTTCAACTA 57.205 33.333 15.18 4.37 0.00 2.24
6335 15853 5.417580 TGTTGTTCAACTAGAAAGCAGGTTT 59.582 36.000 15.18 0.00 38.13 3.27
6344 15862 3.136808 GAAAGCAGGTTTCGCCAATAG 57.863 47.619 9.29 0.00 40.61 1.73
6345 15863 2.489938 AAGCAGGTTTCGCCAATAGA 57.510 45.000 0.00 0.00 40.61 1.98
6346 15864 2.489938 AGCAGGTTTCGCCAATAGAA 57.510 45.000 0.00 0.00 40.61 2.10
6347 15865 3.004752 AGCAGGTTTCGCCAATAGAAT 57.995 42.857 0.00 0.00 40.61 2.40
6348 15866 2.684881 AGCAGGTTTCGCCAATAGAATG 59.315 45.455 0.00 0.00 40.61 2.67
6349 15867 2.682856 GCAGGTTTCGCCAATAGAATGA 59.317 45.455 0.00 0.00 40.61 2.57
6350 15868 3.316308 GCAGGTTTCGCCAATAGAATGAT 59.684 43.478 0.00 0.00 40.61 2.45
6351 15869 4.515191 GCAGGTTTCGCCAATAGAATGATA 59.485 41.667 0.00 0.00 40.61 2.15
6352 15870 5.560953 GCAGGTTTCGCCAATAGAATGATAC 60.561 44.000 0.00 0.00 40.61 2.24
6353 15871 4.750098 AGGTTTCGCCAATAGAATGATACG 59.250 41.667 0.00 0.00 40.61 3.06
6354 15872 4.510340 GGTTTCGCCAATAGAATGATACGT 59.490 41.667 0.00 0.00 37.17 3.57
6355 15873 5.693104 GGTTTCGCCAATAGAATGATACGTA 59.307 40.000 0.00 0.00 37.17 3.57
6356 15874 6.201425 GGTTTCGCCAATAGAATGATACGTAA 59.799 38.462 0.00 0.00 37.17 3.18
6357 15875 7.568861 GGTTTCGCCAATAGAATGATACGTAAG 60.569 40.741 0.00 0.00 39.80 2.34
6358 15876 4.921515 TCGCCAATAGAATGATACGTAAGC 59.078 41.667 0.00 0.00 45.62 3.09
6359 15877 4.923871 CGCCAATAGAATGATACGTAAGCT 59.076 41.667 0.00 0.00 45.62 3.74
6360 15878 5.405571 CGCCAATAGAATGATACGTAAGCTT 59.594 40.000 3.48 3.48 45.62 3.74
6361 15879 6.073765 CGCCAATAGAATGATACGTAAGCTTT 60.074 38.462 3.20 0.00 45.62 3.51
6362 15880 7.072030 GCCAATAGAATGATACGTAAGCTTTG 58.928 38.462 3.20 0.00 45.62 2.77
6363 15881 7.254795 GCCAATAGAATGATACGTAAGCTTTGT 60.255 37.037 3.20 6.78 45.62 2.83
6364 15882 8.064222 CCAATAGAATGATACGTAAGCTTTGTG 58.936 37.037 3.20 0.00 45.62 3.33
6365 15883 8.604035 CAATAGAATGATACGTAAGCTTTGTGT 58.396 33.333 3.20 2.01 45.62 3.72
6366 15884 9.811995 AATAGAATGATACGTAAGCTTTGTGTA 57.188 29.630 3.20 5.94 45.62 2.90
6367 15885 9.982651 ATAGAATGATACGTAAGCTTTGTGTAT 57.017 29.630 3.20 10.68 45.62 2.29
6368 15886 8.718102 AGAATGATACGTAAGCTTTGTGTATT 57.282 30.769 3.20 6.81 45.62 1.89
6369 15887 9.162764 AGAATGATACGTAAGCTTTGTGTATTT 57.837 29.630 3.20 3.61 45.62 1.40
6370 15888 9.210426 GAATGATACGTAAGCTTTGTGTATTTG 57.790 33.333 3.20 0.00 45.62 2.32
6371 15889 7.892778 TGATACGTAAGCTTTGTGTATTTGA 57.107 32.000 3.20 0.00 45.62 2.69
6372 15890 7.959733 TGATACGTAAGCTTTGTGTATTTGAG 58.040 34.615 3.20 0.00 45.62 3.02
6373 15891 7.815549 TGATACGTAAGCTTTGTGTATTTGAGA 59.184 33.333 3.20 0.00 45.62 3.27
6374 15892 6.854496 ACGTAAGCTTTGTGTATTTGAGAA 57.146 33.333 3.20 0.00 45.62 2.87
6375 15893 7.254227 ACGTAAGCTTTGTGTATTTGAGAAA 57.746 32.000 3.20 0.00 45.62 2.52
6376 15894 7.699566 ACGTAAGCTTTGTGTATTTGAGAAAA 58.300 30.769 3.20 0.00 45.62 2.29
6377 15895 8.185505 ACGTAAGCTTTGTGTATTTGAGAAAAA 58.814 29.630 3.20 0.00 45.62 1.94
6404 15922 4.295381 GTTTCACCAAACCACGCG 57.705 55.556 3.53 3.53 36.62 6.01
6405 15923 1.942223 GTTTCACCAAACCACGCGC 60.942 57.895 5.73 0.00 36.62 6.86
6406 15924 2.407428 TTTCACCAAACCACGCGCA 61.407 52.632 5.73 0.00 0.00 6.09
6468 15989 7.536622 GCTAAAGTGTCTGAAGTGAATTGAATG 59.463 37.037 0.00 0.00 0.00 2.67
6469 15990 5.368256 AGTGTCTGAAGTGAATTGAATGC 57.632 39.130 0.00 0.00 0.00 3.56
6474 15995 6.263842 TGTCTGAAGTGAATTGAATGCTTTCT 59.736 34.615 12.96 0.00 32.78 2.52
6497 16018 5.701224 TCCATTTTACCTGTCCTTTTCTGT 58.299 37.500 0.00 0.00 0.00 3.41
6524 16045 3.751175 CGTGCTAGAGTTTTCCCATTTGA 59.249 43.478 0.00 0.00 0.00 2.69
6652 16511 5.814764 AGATAGTATAACCCTGATACGCG 57.185 43.478 3.53 3.53 35.35 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.309688 GGAGAGCAGGAGAGGGAGT 59.690 63.158 0.00 0.00 0.00 3.85
52 53 4.704103 ACCTGGAGCGCAGAGGGA 62.704 66.667 19.81 0.00 0.00 4.20
53 54 4.463879 CACCTGGAGCGCAGAGGG 62.464 72.222 19.81 14.07 0.00 4.30
56 57 4.074526 GAGCACCTGGAGCGCAGA 62.075 66.667 11.47 0.00 37.01 4.26
89 90 4.379243 CGGCGGAGGTGTCAAGCT 62.379 66.667 0.00 0.00 36.66 3.74
102 103 4.781959 CAAGCACAATGGCCGGCG 62.782 66.667 22.54 9.21 0.00 6.46
103 104 4.440127 CCAAGCACAATGGCCGGC 62.440 66.667 21.18 21.18 0.00 6.13
166 167 1.310933 TGGAGAGGACGCGGTTAGAC 61.311 60.000 12.47 0.00 0.00 2.59
318 324 3.488090 CGGCTCCGCGAAACTTCC 61.488 66.667 8.23 0.00 0.00 3.46
333 339 4.154347 GGCAGAGGCAGTCTCCGG 62.154 72.222 0.00 0.00 43.44 5.14
491 517 1.866483 TAGCGGTAGAGGTGGGTGGA 61.866 60.000 0.00 0.00 0.00 4.02
493 519 0.683504 AGTAGCGGTAGAGGTGGGTG 60.684 60.000 0.00 0.00 0.00 4.61
494 520 0.040794 AAGTAGCGGTAGAGGTGGGT 59.959 55.000 0.00 0.00 0.00 4.51
521 547 1.205893 AGAAACTGTCTGCCTCGATCC 59.794 52.381 0.00 0.00 34.29 3.36
586 612 3.117738 AGGAGCATACCTTGGGATTGAAG 60.118 47.826 0.00 0.00 36.86 3.02
630 656 8.455682 CCAAAAGTTAGTACAAAGTTGAGTCAA 58.544 33.333 0.08 0.08 0.00 3.18
640 666 5.033589 TCCGTCCCAAAAGTTAGTACAAA 57.966 39.130 0.00 0.00 0.00 2.83
641 667 4.503643 CCTCCGTCCCAAAAGTTAGTACAA 60.504 45.833 0.00 0.00 0.00 2.41
642 668 3.007182 CCTCCGTCCCAAAAGTTAGTACA 59.993 47.826 0.00 0.00 0.00 2.90
643 669 3.593096 CCTCCGTCCCAAAAGTTAGTAC 58.407 50.000 0.00 0.00 0.00 2.73
644 670 2.568509 CCCTCCGTCCCAAAAGTTAGTA 59.431 50.000 0.00 0.00 0.00 1.82
645 671 1.350019 CCCTCCGTCCCAAAAGTTAGT 59.650 52.381 0.00 0.00 0.00 2.24
646 672 1.626825 TCCCTCCGTCCCAAAAGTTAG 59.373 52.381 0.00 0.00 0.00 2.34
647 673 1.626825 CTCCCTCCGTCCCAAAAGTTA 59.373 52.381 0.00 0.00 0.00 2.24
648 674 0.400594 CTCCCTCCGTCCCAAAAGTT 59.599 55.000 0.00 0.00 0.00 2.66
649 675 0.767060 ACTCCCTCCGTCCCAAAAGT 60.767 55.000 0.00 0.00 0.00 2.66
650 676 1.066358 GTACTCCCTCCGTCCCAAAAG 60.066 57.143 0.00 0.00 0.00 2.27
762 816 0.464735 TATTCATTTGGCGGTCGGGG 60.465 55.000 0.00 0.00 0.00 5.73
784 838 6.769822 CCAGATGCTTTAGGTGACTGATTAAT 59.230 38.462 0.00 0.00 43.88 1.40
839 894 4.763793 CAGGATCCATTTGCCTATTACCAG 59.236 45.833 15.82 0.00 0.00 4.00
840 895 4.167892 ACAGGATCCATTTGCCTATTACCA 59.832 41.667 15.82 0.00 0.00 3.25
841 896 4.729868 ACAGGATCCATTTGCCTATTACC 58.270 43.478 15.82 0.00 0.00 2.85
843 898 6.012337 TGAACAGGATCCATTTGCCTATTA 57.988 37.500 15.82 0.00 0.00 0.98
855 911 3.971245 ACTCACTTCTGAACAGGATCC 57.029 47.619 2.48 2.48 0.00 3.36
915 973 4.098894 TCGAGGTTGGAGGGTAAGTAATT 58.901 43.478 0.00 0.00 0.00 1.40
916 974 3.716431 TCGAGGTTGGAGGGTAAGTAAT 58.284 45.455 0.00 0.00 0.00 1.89
998 1056 6.096846 GGAAAGGAAACCACTGTATTATGCAT 59.903 38.462 3.79 3.79 0.00 3.96
1039 1097 0.248843 GCACCACCTCTCTCCTTCTG 59.751 60.000 0.00 0.00 0.00 3.02
1116 1174 4.740822 AGCCCCAACGCATCCACC 62.741 66.667 0.00 0.00 0.00 4.61
1257 1315 6.036083 GTGCATTTACAATCTCTTCTCGCTAA 59.964 38.462 0.00 0.00 0.00 3.09
1258 1316 5.520288 GTGCATTTACAATCTCTTCTCGCTA 59.480 40.000 0.00 0.00 0.00 4.26
1370 1428 3.297134 ACTGGTCAGTGTGTTTCCATT 57.703 42.857 2.46 0.00 40.75 3.16
1653 1711 3.386078 AGCTTCAGAGTTTGAGTGACTGA 59.614 43.478 0.00 0.00 37.07 3.41
1677 1735 7.065085 CGTAGACCAAATTGATGAATTCTGACT 59.935 37.037 7.05 1.53 30.02 3.41
1680 1738 7.076842 ACGTAGACCAAATTGATGAATTCTG 57.923 36.000 7.05 0.00 30.02 3.02
1683 1741 8.561738 AAGTACGTAGACCAAATTGATGAATT 57.438 30.769 0.00 0.00 32.87 2.17
1684 1742 9.095065 GTAAGTACGTAGACCAAATTGATGAAT 57.905 33.333 0.00 0.00 0.00 2.57
1685 1743 8.308931 AGTAAGTACGTAGACCAAATTGATGAA 58.691 33.333 0.00 0.00 0.00 2.57
1686 1744 7.833786 AGTAAGTACGTAGACCAAATTGATGA 58.166 34.615 0.00 0.00 0.00 2.92
1687 1745 8.475331 AAGTAAGTACGTAGACCAAATTGATG 57.525 34.615 0.00 0.00 0.00 3.07
1688 1746 8.932791 CAAAGTAAGTACGTAGACCAAATTGAT 58.067 33.333 0.00 0.00 0.00 2.57
1689 1747 7.927629 ACAAAGTAAGTACGTAGACCAAATTGA 59.072 33.333 0.00 0.00 0.00 2.57
1690 1748 8.080083 ACAAAGTAAGTACGTAGACCAAATTG 57.920 34.615 0.00 0.00 0.00 2.32
1691 1749 8.667076 AACAAAGTAAGTACGTAGACCAAATT 57.333 30.769 0.00 0.00 0.00 1.82
1692 1750 9.415544 CTAACAAAGTAAGTACGTAGACCAAAT 57.584 33.333 0.00 0.00 0.00 2.32
1693 1751 7.382218 GCTAACAAAGTAAGTACGTAGACCAAA 59.618 37.037 0.00 0.00 0.00 3.28
1694 1752 6.863126 GCTAACAAAGTAAGTACGTAGACCAA 59.137 38.462 0.00 0.00 0.00 3.67
1695 1753 6.016360 TGCTAACAAAGTAAGTACGTAGACCA 60.016 38.462 0.00 0.00 0.00 4.02
1696 1754 6.381801 TGCTAACAAAGTAAGTACGTAGACC 58.618 40.000 0.00 0.00 0.00 3.85
1697 1755 7.410193 GCTTGCTAACAAAGTAAGTACGTAGAC 60.410 40.741 0.00 0.00 46.42 2.59
1698 1756 6.583806 GCTTGCTAACAAAGTAAGTACGTAGA 59.416 38.462 0.00 0.00 46.42 2.59
1699 1757 6.364165 TGCTTGCTAACAAAGTAAGTACGTAG 59.636 38.462 0.00 0.00 46.42 3.51
1700 1758 6.215121 TGCTTGCTAACAAAGTAAGTACGTA 58.785 36.000 0.00 0.00 46.42 3.57
1701 1759 5.051816 TGCTTGCTAACAAAGTAAGTACGT 58.948 37.500 0.00 0.00 46.42 3.57
1702 1760 5.585500 TGCTTGCTAACAAAGTAAGTACG 57.415 39.130 5.05 0.00 46.42 3.67
1704 1762 6.017440 CCTTGTGCTTGCTAACAAAGTAAGTA 60.017 38.462 5.05 0.00 46.42 2.24
1705 1763 5.221048 CCTTGTGCTTGCTAACAAAGTAAGT 60.221 40.000 5.05 0.00 46.42 2.24
1707 1765 4.884744 TCCTTGTGCTTGCTAACAAAGTAA 59.115 37.500 0.00 0.00 35.95 2.24
1708 1766 4.456535 TCCTTGTGCTTGCTAACAAAGTA 58.543 39.130 0.00 0.00 35.95 2.24
1709 1767 3.287222 TCCTTGTGCTTGCTAACAAAGT 58.713 40.909 0.00 0.00 35.95 2.66
1710 1768 3.988379 TCCTTGTGCTTGCTAACAAAG 57.012 42.857 0.00 0.00 35.95 2.77
1711 1769 4.727507 TTTCCTTGTGCTTGCTAACAAA 57.272 36.364 0.00 0.00 35.95 2.83
1865 1923 4.260375 CGATCTTTCTAATTCAACAGGCCG 60.260 45.833 0.00 0.00 0.00 6.13
1918 1976 2.171659 TGTTAGCTGGTGTTCCTCAACA 59.828 45.455 0.00 0.00 41.95 3.33
2026 2084 1.353091 GATAGCCCTTCCCCTACCTG 58.647 60.000 0.00 0.00 0.00 4.00
2085 2143 5.852250 ACCCCTATGAGTAATAAATCCAGCT 59.148 40.000 0.00 0.00 0.00 4.24
2199 2257 5.103000 CCCATCTCTCAGTTACGTAGTTTG 58.897 45.833 0.00 0.00 37.78 2.93
2330 2391 8.408043 AAACCATGTTCAAGAAGAATCATACA 57.592 30.769 0.00 0.00 38.76 2.29
2476 2537 2.122547 AGTGACCCCACCGGAACT 60.123 61.111 9.46 0.00 44.22 3.01
2547 2608 2.758979 GGTGCTTGTAGCTACTACCTGA 59.241 50.000 23.84 0.10 42.97 3.86
2554 2615 3.040147 TGAGTTGGTGCTTGTAGCTAC 57.960 47.619 17.30 17.30 42.97 3.58
2624 2685 9.442033 GGTTTTGCCGAATGTTATAACTAATAC 57.558 33.333 16.33 3.32 0.00 1.89
2692 2753 1.547372 GGAATGCACCATGAGCTTTGT 59.453 47.619 13.31 0.00 30.66 2.83
2939 3004 4.703899 CATTTGAAAAGTGCAGCAAGAC 57.296 40.909 0.00 0.00 0.00 3.01
2951 3016 5.814188 TGCTTGTGTGTTATGCATTTGAAAA 59.186 32.000 3.54 0.00 0.00 2.29
2955 3020 4.924462 TGATGCTTGTGTGTTATGCATTTG 59.076 37.500 3.54 0.00 43.28 2.32
3113 3193 3.561143 TGAAAGTAAAGGAGCAAAGGCA 58.439 40.909 0.00 0.00 44.61 4.75
3267 3348 2.880443 CATGCCATTATTAGCCAGGGT 58.120 47.619 0.00 0.00 0.00 4.34
3425 3507 2.977808 AGTCGGGTCCCATCAATATCT 58.022 47.619 9.12 0.00 0.00 1.98
3426 3508 4.087182 TCTAGTCGGGTCCCATCAATATC 58.913 47.826 9.12 0.00 0.00 1.63
3427 3509 4.127918 TCTAGTCGGGTCCCATCAATAT 57.872 45.455 9.12 0.00 0.00 1.28
3428 3510 3.605726 TCTAGTCGGGTCCCATCAATA 57.394 47.619 9.12 0.00 0.00 1.90
4368 12383 6.805016 TGGATGTATGCCAAATAACCATTT 57.195 33.333 0.00 0.00 34.60 2.32
4462 12477 7.227512 GCAAGCATCAACACTAGGTTTATCTAT 59.772 37.037 0.00 0.00 37.72 1.98
4692 12707 1.861982 AGAGGCATACCAGTTACCGT 58.138 50.000 0.00 0.00 39.06 4.83
4740 12755 6.796426 AGAGAACAAACTAAGTGAAAAAGGC 58.204 36.000 0.00 0.00 0.00 4.35
4941 12956 8.341173 GCAAAATCAGTAATCTTAGGAGTCATG 58.659 37.037 0.00 0.00 0.00 3.07
5002 13017 3.240069 CGAGTAAACTACCCTTGTGTCG 58.760 50.000 0.00 0.00 0.00 4.35
5104 13120 6.762702 AACCCCTAAAACCAAACATATACG 57.237 37.500 0.00 0.00 0.00 3.06
5109 13125 7.423341 TCCATATAACCCCTAAAACCAAACAT 58.577 34.615 0.00 0.00 0.00 2.71
5119 13135 5.378165 TCCAGGATCCATATAACCCCTAA 57.622 43.478 15.82 0.00 0.00 2.69
5168 13184 4.034858 CCGAAGCTATACACGTCACTCTTA 59.965 45.833 0.00 0.00 0.00 2.10
5275 13291 2.171448 AGCACAGTTTTCAGAGGACAGT 59.829 45.455 0.00 0.00 0.00 3.55
5276 13292 2.805099 GAGCACAGTTTTCAGAGGACAG 59.195 50.000 0.00 0.00 0.00 3.51
5277 13293 2.435805 AGAGCACAGTTTTCAGAGGACA 59.564 45.455 0.00 0.00 0.00 4.02
5278 13294 2.805099 CAGAGCACAGTTTTCAGAGGAC 59.195 50.000 0.00 0.00 0.00 3.85
5279 13295 2.808202 GCAGAGCACAGTTTTCAGAGGA 60.808 50.000 0.00 0.00 0.00 3.71
5280 13296 1.534595 GCAGAGCACAGTTTTCAGAGG 59.465 52.381 0.00 0.00 0.00 3.69
5281 13297 2.216046 TGCAGAGCACAGTTTTCAGAG 58.784 47.619 0.00 0.00 31.71 3.35
5282 13298 2.330440 TGCAGAGCACAGTTTTCAGA 57.670 45.000 0.00 0.00 31.71 3.27
5283 13299 3.425577 TTTGCAGAGCACAGTTTTCAG 57.574 42.857 0.00 0.00 38.71 3.02
5284 13300 4.821260 TCTATTTGCAGAGCACAGTTTTCA 59.179 37.500 0.00 0.00 38.71 2.69
5285 13301 5.362556 TCTATTTGCAGAGCACAGTTTTC 57.637 39.130 0.00 0.00 38.71 2.29
5286 13302 5.772825 TTCTATTTGCAGAGCACAGTTTT 57.227 34.783 0.00 0.00 38.71 2.43
5287 13303 5.972107 ATTCTATTTGCAGAGCACAGTTT 57.028 34.783 0.00 0.00 38.71 2.66
5288 13304 5.105997 GGAATTCTATTTGCAGAGCACAGTT 60.106 40.000 5.23 0.00 38.71 3.16
5289 13305 4.397417 GGAATTCTATTTGCAGAGCACAGT 59.603 41.667 5.23 0.00 38.71 3.55
5290 13306 4.639310 AGGAATTCTATTTGCAGAGCACAG 59.361 41.667 5.23 0.00 38.71 3.66
5294 13310 4.641989 TCCAAGGAATTCTATTTGCAGAGC 59.358 41.667 5.23 0.00 0.00 4.09
5325 13341 6.863126 CCGATATATGAACAAAGAAAATGGGC 59.137 38.462 0.00 0.00 0.00 5.36
5355 13371 3.283259 ACTTGAGTGCCCCTATTTAGC 57.717 47.619 0.00 0.00 0.00 3.09
5385 13402 7.020010 GCATCATAAATAGAGAAGGCAATTCG 58.980 38.462 0.00 0.00 43.16 3.34
5396 13413 5.238868 ACAAGCTGCAGCATCATAAATAGAG 59.761 40.000 38.24 14.41 45.16 2.43
5398 13415 5.008316 TGACAAGCTGCAGCATCATAAATAG 59.992 40.000 38.24 15.83 45.16 1.73
5679 13696 8.240267 AGTACTATCTTGGTTCAGTTATCTCC 57.760 38.462 0.00 0.00 0.00 3.71
5703 13720 1.098050 CCTTGAATCGCCCAAAGGAG 58.902 55.000 0.00 0.00 33.47 3.69
5704 13721 0.965363 GCCTTGAATCGCCCAAAGGA 60.965 55.000 4.51 0.00 33.47 3.36
5705 13722 1.512694 GCCTTGAATCGCCCAAAGG 59.487 57.895 0.00 0.00 0.00 3.11
5706 13723 1.250154 TGGCCTTGAATCGCCCAAAG 61.250 55.000 3.32 0.00 45.07 2.77
5707 13724 1.228706 TGGCCTTGAATCGCCCAAA 60.229 52.632 3.32 0.00 45.07 3.28
5708 13725 1.976474 GTGGCCTTGAATCGCCCAA 60.976 57.895 3.32 0.00 45.07 4.12
5740 13757 1.750930 CTCTGGGCGCCATGTAGAT 59.249 57.895 30.85 0.00 30.82 1.98
5753 13770 9.357161 AGAGTACTGTACTTAAATATCCTCTGG 57.643 37.037 20.54 0.00 39.59 3.86
5767 13784 3.455177 TGGATCGGAGAGAGTACTGTACT 59.545 47.826 19.79 19.79 43.63 2.73
5768 13785 3.806380 TGGATCGGAGAGAGTACTGTAC 58.194 50.000 9.93 9.93 43.63 2.90
5769 13786 4.498894 TTGGATCGGAGAGAGTACTGTA 57.501 45.455 0.00 0.00 43.63 2.74
5770 13787 3.367646 TTGGATCGGAGAGAGTACTGT 57.632 47.619 0.00 0.00 43.63 3.55
5771 13788 4.927978 ATTTGGATCGGAGAGAGTACTG 57.072 45.455 0.00 0.00 43.63 2.74
5772 13789 7.604657 ATTAATTTGGATCGGAGAGAGTACT 57.395 36.000 0.00 0.00 43.63 2.73
5773 13790 7.926555 TCAATTAATTTGGATCGGAGAGAGTAC 59.073 37.037 0.00 0.00 36.36 2.73
5774 13791 7.926555 GTCAATTAATTTGGATCGGAGAGAGTA 59.073 37.037 0.00 0.00 36.36 2.59
5775 13792 6.763610 GTCAATTAATTTGGATCGGAGAGAGT 59.236 38.462 0.00 0.00 36.36 3.24
5776 13793 6.203723 GGTCAATTAATTTGGATCGGAGAGAG 59.796 42.308 0.00 0.00 36.36 3.20
5777 13794 6.055588 GGTCAATTAATTTGGATCGGAGAGA 58.944 40.000 0.00 0.00 36.36 3.10
5779 13796 6.001449 AGGTCAATTAATTTGGATCGGAGA 57.999 37.500 0.00 0.00 37.06 3.71
5780 13797 6.073003 GCTAGGTCAATTAATTTGGATCGGAG 60.073 42.308 0.00 0.02 35.92 4.63
5781 13798 5.763204 GCTAGGTCAATTAATTTGGATCGGA 59.237 40.000 0.00 0.00 35.92 4.55
5782 13799 5.765182 AGCTAGGTCAATTAATTTGGATCGG 59.235 40.000 0.00 0.00 35.92 4.18
5783 13800 6.708054 AGAGCTAGGTCAATTAATTTGGATCG 59.292 38.462 23.18 0.00 35.92 3.69
5784 13801 9.213799 CTAGAGCTAGGTCAATTAATTTGGATC 57.786 37.037 23.18 0.00 35.92 3.36
5785 13802 8.718656 ACTAGAGCTAGGTCAATTAATTTGGAT 58.281 33.333 23.18 1.10 37.49 3.41
5786 13803 8.090788 ACTAGAGCTAGGTCAATTAATTTGGA 57.909 34.615 23.18 0.00 37.49 3.53
5787 13804 9.482627 CTACTAGAGCTAGGTCAATTAATTTGG 57.517 37.037 23.18 5.21 37.49 3.28
5791 13808 9.649316 AGTTCTACTAGAGCTAGGTCAATTAAT 57.351 33.333 23.18 4.64 33.87 1.40
5792 13809 9.122779 GAGTTCTACTAGAGCTAGGTCAATTAA 57.877 37.037 23.18 7.38 35.86 1.40
5793 13810 8.272889 TGAGTTCTACTAGAGCTAGGTCAATTA 58.727 37.037 23.18 9.79 35.86 1.40
5794 13811 7.120051 TGAGTTCTACTAGAGCTAGGTCAATT 58.880 38.462 23.18 9.18 35.86 2.32
5795 13812 6.664714 TGAGTTCTACTAGAGCTAGGTCAAT 58.335 40.000 23.18 10.64 35.86 2.57
5796 13813 6.063496 TGAGTTCTACTAGAGCTAGGTCAA 57.937 41.667 23.18 5.45 35.86 3.18
5797 13814 5.695424 TGAGTTCTACTAGAGCTAGGTCA 57.305 43.478 23.18 8.93 35.86 4.02
5798 13815 5.472137 CCATGAGTTCTACTAGAGCTAGGTC 59.528 48.000 14.19 14.19 35.86 3.85
5799 13816 5.381757 CCATGAGTTCTACTAGAGCTAGGT 58.618 45.833 9.18 0.00 35.86 3.08
5800 13817 4.764823 CCCATGAGTTCTACTAGAGCTAGG 59.235 50.000 9.18 5.77 35.86 3.02
5801 13818 5.626142 TCCCATGAGTTCTACTAGAGCTAG 58.374 45.833 2.62 3.06 35.86 3.42
5802 13819 5.626142 CTCCCATGAGTTCTACTAGAGCTA 58.374 45.833 2.62 0.00 35.86 3.32
5803 13820 4.469657 CTCCCATGAGTTCTACTAGAGCT 58.530 47.826 2.24 2.24 38.55 4.09
5804 13821 4.846779 CTCCCATGAGTTCTACTAGAGC 57.153 50.000 0.00 0.00 33.70 4.09
5855 13872 1.423584 ACCCATATCATCGCTCCACA 58.576 50.000 0.00 0.00 0.00 4.17
5900 13917 4.217550 TGAGTGATCATAACGAGTGACACA 59.782 41.667 8.59 0.00 33.77 3.72
5909 13926 7.008440 ACAATGTGATTGAGTGATCATAACG 57.992 36.000 0.00 0.00 42.83 3.18
5919 13936 4.692625 GCTGTGTCTACAATGTGATTGAGT 59.307 41.667 0.00 0.00 42.83 3.41
5938 13955 3.996921 AACTGAGGAGATTCATGCTGT 57.003 42.857 0.00 0.00 0.00 4.40
6008 14028 9.442047 CACATCTATAACCTTCTCTTCAAAGTT 57.558 33.333 0.00 0.00 0.00 2.66
6039 14067 1.838112 ACATGGTGTACATTGCAGGG 58.162 50.000 0.00 0.00 37.84 4.45
6210 15722 4.565028 GCTATGATGCATCAGGATTCAGGA 60.565 45.833 31.36 7.00 40.64 3.86
6212 15724 4.580868 AGCTATGATGCATCAGGATTCAG 58.419 43.478 31.36 20.62 40.64 3.02
6213 15725 4.635699 AGCTATGATGCATCAGGATTCA 57.364 40.909 31.36 10.87 40.64 2.57
6214 15726 4.156190 CCAAGCTATGATGCATCAGGATTC 59.844 45.833 31.36 18.59 40.64 2.52
6216 15728 3.561528 CCCAAGCTATGATGCATCAGGAT 60.562 47.826 31.36 22.46 40.64 3.24
6230 15746 3.950232 CGTAGGAGGCCCAAGCTA 58.050 61.111 0.00 0.00 39.73 3.32
6264 15782 3.365265 GGCAACGAGGTGGCAAGG 61.365 66.667 9.92 0.00 43.33 3.61
6271 15789 0.535102 CACTTTGAGGGCAACGAGGT 60.535 55.000 0.00 0.00 32.79 3.85
6297 15815 6.978080 AGTTGAACAACATTAAGCGTCATTTT 59.022 30.769 17.85 0.00 43.47 1.82
6305 15823 7.138736 TGCTTTCTAGTTGAACAACATTAAGC 58.861 34.615 23.09 23.09 43.47 3.09
6323 15841 1.620822 ATTGGCGAAACCTGCTTTCT 58.379 45.000 0.00 0.00 40.22 2.52
6335 15853 4.921515 GCTTACGTATCATTCTATTGGCGA 59.078 41.667 0.00 0.00 0.00 5.54
6337 15855 6.787085 AAGCTTACGTATCATTCTATTGGC 57.213 37.500 0.00 0.00 0.00 4.52
6339 15857 8.604035 ACACAAAGCTTACGTATCATTCTATTG 58.396 33.333 0.00 0.00 0.00 1.90
6340 15858 8.718102 ACACAAAGCTTACGTATCATTCTATT 57.282 30.769 0.00 0.00 0.00 1.73
6341 15859 9.982651 ATACACAAAGCTTACGTATCATTCTAT 57.017 29.630 0.00 0.00 0.00 1.98
6342 15860 9.811995 AATACACAAAGCTTACGTATCATTCTA 57.188 29.630 0.00 0.00 0.00 2.10
6343 15861 8.718102 AATACACAAAGCTTACGTATCATTCT 57.282 30.769 0.00 0.00 0.00 2.40
6344 15862 9.210426 CAAATACACAAAGCTTACGTATCATTC 57.790 33.333 0.00 0.00 0.00 2.67
6345 15863 8.941977 TCAAATACACAAAGCTTACGTATCATT 58.058 29.630 0.00 0.00 0.00 2.57
6346 15864 8.487313 TCAAATACACAAAGCTTACGTATCAT 57.513 30.769 0.00 0.00 0.00 2.45
6347 15865 7.815549 TCTCAAATACACAAAGCTTACGTATCA 59.184 33.333 0.00 0.00 0.00 2.15
6348 15866 8.181487 TCTCAAATACACAAAGCTTACGTATC 57.819 34.615 0.00 0.00 0.00 2.24
6349 15867 8.542497 TTCTCAAATACACAAAGCTTACGTAT 57.458 30.769 0.00 4.50 0.00 3.06
6350 15868 7.949903 TTCTCAAATACACAAAGCTTACGTA 57.050 32.000 0.00 2.04 0.00 3.57
6351 15869 6.854496 TTCTCAAATACACAAAGCTTACGT 57.146 33.333 0.00 0.00 0.00 3.57
6352 15870 8.555166 TTTTTCTCAAATACACAAAGCTTACG 57.445 30.769 0.00 0.00 0.00 3.18
6387 15905 1.942223 GCGCGTGGTTTGGTGAAAC 60.942 57.895 8.43 0.00 40.79 2.78
6388 15906 1.729470 ATGCGCGTGGTTTGGTGAAA 61.729 50.000 8.43 0.00 0.00 2.69
6389 15907 2.123988 GATGCGCGTGGTTTGGTGAA 62.124 55.000 6.97 0.00 0.00 3.18
6390 15908 2.593148 ATGCGCGTGGTTTGGTGA 60.593 55.556 8.43 0.00 0.00 4.02
6403 15921 1.209275 CGCTTCCTTAGTCCGATGCG 61.209 60.000 0.00 0.00 43.27 4.73
6404 15922 0.876342 CCGCTTCCTTAGTCCGATGC 60.876 60.000 0.00 0.00 0.00 3.91
6405 15923 0.876342 GCCGCTTCCTTAGTCCGATG 60.876 60.000 0.00 0.00 0.00 3.84
6406 15924 1.327690 TGCCGCTTCCTTAGTCCGAT 61.328 55.000 0.00 0.00 0.00 4.18
6440 15961 6.203530 TCAATTCACTTCAGACACTTTAGCAG 59.796 38.462 0.00 0.00 0.00 4.24
6445 15966 6.040166 AGCATTCAATTCACTTCAGACACTTT 59.960 34.615 0.00 0.00 0.00 2.66
6450 15971 6.675987 AGAAAGCATTCAATTCACTTCAGAC 58.324 36.000 4.27 0.00 38.06 3.51
6451 15972 6.072286 GGAGAAAGCATTCAATTCACTTCAGA 60.072 38.462 4.27 0.00 38.06 3.27
6455 15976 6.600882 ATGGAGAAAGCATTCAATTCACTT 57.399 33.333 4.27 0.00 38.06 3.16
6468 15989 4.336280 AGGACAGGTAAAATGGAGAAAGC 58.664 43.478 0.00 0.00 0.00 3.51
6469 15990 6.901081 AAAGGACAGGTAAAATGGAGAAAG 57.099 37.500 0.00 0.00 0.00 2.62
6474 15995 5.701224 ACAGAAAAGGACAGGTAAAATGGA 58.299 37.500 0.00 0.00 0.00 3.41
6497 16018 1.519408 GAAAACTCTAGCACGGCCAA 58.481 50.000 2.24 0.00 0.00 4.52
6550 16071 9.445878 AACATATCTATATTTGACAGAGGCATG 57.554 33.333 0.00 0.00 0.00 4.06
6554 16075 8.725148 GGCAAACATATCTATATTTGACAGAGG 58.275 37.037 5.38 0.00 0.00 3.69
6649 16508 1.366854 GGTTAAAAGGAGCTCCCGCG 61.367 60.000 29.54 0.00 42.32 6.46
6652 16511 1.030488 GGCGGTTAAAAGGAGCTCCC 61.030 60.000 29.54 12.48 36.42 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.