Multiple sequence alignment - TraesCS5D01G193200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G193200 chr5D 100.000 6764 0 0 1 6764 297496276 297503039 0.000000e+00 12491.0
1 TraesCS5D01G193200 chr5D 91.787 621 50 1 1 620 282836325 282835705 0.000000e+00 863.0
2 TraesCS5D01G193200 chr5D 95.238 84 2 2 3222 3304 71222559 71222641 1.530000e-26 132.0
3 TraesCS5D01G193200 chr5D 95.238 84 2 2 3222 3304 71224034 71224116 1.530000e-26 132.0
4 TraesCS5D01G193200 chr5D 95.238 84 2 2 3222 3304 71235881 71235963 1.530000e-26 132.0
5 TraesCS5D01G193200 chr5D 95.238 84 2 2 3222 3304 71244647 71244729 1.530000e-26 132.0
6 TraesCS5D01G193200 chr5D 89.412 85 9 0 3552 3636 533664046 533663962 2.580000e-19 108.0
7 TraesCS5D01G193200 chr5D 88.372 86 10 0 3550 3635 291498384 291498469 3.340000e-18 104.0
8 TraesCS5D01G193200 chr5B 97.546 3872 67 12 1973 5840 337829518 337833365 0.000000e+00 6599.0
9 TraesCS5D01G193200 chr5B 87.713 586 63 8 6113 6696 337835690 337836268 0.000000e+00 675.0
10 TraesCS5D01G193200 chr5B 95.442 351 15 1 1563 1912 337828975 337829325 5.920000e-155 558.0
11 TraesCS5D01G193200 chr5B 81.855 496 73 10 6256 6748 511009797 511010278 1.060000e-107 401.0
12 TraesCS5D01G193200 chr5B 90.228 307 17 5 818 1112 337828012 337828317 8.230000e-104 388.0
13 TraesCS5D01G193200 chr5B 92.727 220 14 1 1101 1320 337828591 337828808 3.940000e-82 316.0
14 TraesCS5D01G193200 chr5B 87.204 211 23 4 1357 1565 337828812 337829020 3.150000e-58 237.0
15 TraesCS5D01G193200 chr5B 96.610 59 2 0 6703 6761 337836492 337836550 1.550000e-16 99.0
16 TraesCS5D01G193200 chr5A 96.035 2295 78 7 3670 5956 401747829 401745540 0.000000e+00 3722.0
17 TraesCS5D01G193200 chr5A 95.030 1690 66 12 1566 3248 401753856 401752178 0.000000e+00 2639.0
18 TraesCS5D01G193200 chr5A 91.391 755 47 12 818 1563 401754561 401753816 0.000000e+00 1018.0
19 TraesCS5D01G193200 chr5A 95.571 429 16 2 3243 3671 401748295 401747870 0.000000e+00 684.0
20 TraesCS5D01G193200 chr5A 82.997 694 93 17 6076 6761 535524027 535524703 7.500000e-169 604.0
21 TraesCS5D01G193200 chr5A 87.129 101 10 2 3551 3649 3386672 3386771 1.990000e-20 111.0
22 TraesCS5D01G193200 chr4D 91.506 624 48 4 1 620 294227149 294227771 0.000000e+00 854.0
23 TraesCS5D01G193200 chr4D 91.026 624 50 6 1 620 76710683 76710062 0.000000e+00 837.0
24 TraesCS5D01G193200 chr4D 87.850 107 10 3 3303 3407 474580204 474580309 9.210000e-24 122.0
25 TraesCS5D01G193200 chr4D 90.805 87 8 0 3550 3636 179862537 179862451 4.290000e-22 117.0
26 TraesCS5D01G193200 chr4D 84.158 101 14 2 622 722 87539793 87539695 5.580000e-16 97.1
27 TraesCS5D01G193200 chr2D 91.304 621 53 1 1 620 393604056 393604676 0.000000e+00 846.0
28 TraesCS5D01G193200 chr2D 90.705 624 53 5 1 620 334243169 334242547 0.000000e+00 826.0
29 TraesCS5D01G193200 chr2D 90.660 621 56 2 1 620 98277344 98277963 0.000000e+00 824.0
30 TraesCS5D01G193200 chr2D 93.103 87 6 0 3303 3389 602810540 602810626 1.980000e-25 128.0
31 TraesCS5D01G193200 chr2D 90.625 96 8 1 3303 3397 4451829 4451924 7.120000e-25 126.0
32 TraesCS5D01G193200 chr2D 89.412 85 9 0 3551 3635 299891103 299891019 2.580000e-19 108.0
33 TraesCS5D01G193200 chr1D 90.821 621 56 1 1 620 323789405 323790025 0.000000e+00 830.0
34 TraesCS5D01G193200 chr1D 94.286 70 4 0 3570 3639 110052537 110052468 2.580000e-19 108.0
35 TraesCS5D01G193200 chr1D 88.764 89 6 3 3551 3637 60287336 60287422 9.280000e-19 106.0
36 TraesCS5D01G193200 chr1D 88.750 80 9 0 3556 3635 22976538 22976617 1.550000e-16 99.0
37 TraesCS5D01G193200 chr1D 86.207 87 12 0 3549 3635 332935610 332935696 2.010000e-15 95.3
38 TraesCS5D01G193200 chr1D 81.188 101 15 3 622 722 360383155 360383059 2.020000e-10 78.7
39 TraesCS5D01G193200 chr7D 90.660 621 55 3 1 620 389124080 389124698 0.000000e+00 822.0
40 TraesCS5D01G193200 chr7D 88.764 89 10 0 3547 3635 351583735 351583647 7.170000e-20 110.0
41 TraesCS5D01G193200 chr6D 90.675 622 53 3 1 620 343401863 343402481 0.000000e+00 822.0
42 TraesCS5D01G193200 chr6D 79.866 596 84 9 6171 6764 10970313 10969752 2.940000e-108 403.0
43 TraesCS5D01G193200 chr6D 94.186 86 4 1 3551 3636 256319513 256319429 5.510000e-26 130.0
44 TraesCS5D01G193200 chr6D 85.882 85 10 2 3551 3635 305190212 305190130 9.340000e-14 89.8
45 TraesCS5D01G193200 chr6D 82.796 93 14 2 3543 3635 401309401 401309311 1.560000e-11 82.4
46 TraesCS5D01G193200 chr3D 80.608 691 102 23 6083 6761 140431317 140431987 7.830000e-139 505.0
47 TraesCS5D01G193200 chr3D 85.193 466 62 6 6142 6603 545027971 545028433 7.940000e-129 472.0
48 TraesCS5D01G193200 chr3D 83.660 153 15 7 6609 6761 29863003 29863145 1.180000e-27 135.0
49 TraesCS5D01G193200 chr3A 81.800 489 75 7 6168 6653 681518087 681518564 1.370000e-106 398.0
50 TraesCS5D01G193200 chr3A 78.993 576 81 23 6181 6748 25057163 25056620 2.320000e-94 357.0
51 TraesCS5D01G193200 chr3A 91.011 89 7 1 3551 3639 599793103 599793016 1.190000e-22 119.0
52 TraesCS5D01G193200 chr3A 90.541 74 7 0 6682 6755 681518560 681518633 1.550000e-16 99.0
53 TraesCS5D01G193200 chr3A 93.182 44 3 0 5997 6040 681517871 681517914 1.570000e-06 65.8
54 TraesCS5D01G193200 chr6A 86.765 136 11 4 6615 6749 260026866 260026995 1.970000e-30 145.0
55 TraesCS5D01G193200 chr6A 94.186 86 5 0 3303 3388 68601168 68601083 1.530000e-26 132.0
56 TraesCS5D01G193200 chr6A 94.186 86 5 0 3303 3388 291917541 291917626 1.530000e-26 132.0
57 TraesCS5D01G193200 chr6A 91.860 86 6 1 3551 3636 340046418 340046334 1.190000e-22 119.0
58 TraesCS5D01G193200 chr6A 87.640 89 9 2 3551 3638 1412840 1412753 1.200000e-17 102.0
59 TraesCS5D01G193200 chr2A 96.429 84 3 0 3551 3634 102688041 102688124 9.150000e-29 139.0
60 TraesCS5D01G193200 chr1B 95.349 86 4 0 3303 3388 558812506 558812421 3.290000e-28 137.0
61 TraesCS5D01G193200 chr1B 88.764 89 10 0 3547 3635 411570412 411570500 7.170000e-20 110.0
62 TraesCS5D01G193200 chrUn 97.500 80 1 1 3225 3304 172459700 172459778 1.180000e-27 135.0
63 TraesCS5D01G193200 chrUn 95.238 84 2 2 3222 3304 189035041 189035123 1.530000e-26 132.0
64 TraesCS5D01G193200 chrUn 95.238 84 2 2 3222 3304 461617742 461617660 1.530000e-26 132.0
65 TraesCS5D01G193200 chrUn 87.640 89 9 1 3547 3635 11032312 11032398 1.200000e-17 102.0
66 TraesCS5D01G193200 chrUn 85.227 88 13 0 3548 3635 478179574 478179661 2.600000e-14 91.6
67 TraesCS5D01G193200 chrUn 92.982 57 3 1 3579 3635 16904467 16904522 1.560000e-11 82.4
68 TraesCS5D01G193200 chrUn 83.529 85 12 2 3551 3635 10131509 10131427 2.020000e-10 78.7
69 TraesCS5D01G193200 chrUn 82.022 89 10 5 3551 3635 9847632 9847546 3.380000e-08 71.3
70 TraesCS5D01G193200 chr6B 94.253 87 5 0 3303 3389 86433988 86434074 4.260000e-27 134.0
71 TraesCS5D01G193200 chr6B 93.023 86 5 1 3551 3636 345469735 345469651 2.560000e-24 124.0
72 TraesCS5D01G193200 chr4A 92.473 93 5 2 3303 3395 317073234 317073144 1.530000e-26 132.0
73 TraesCS5D01G193200 chr4A 91.111 90 6 2 3548 3636 590111634 590111546 3.310000e-23 121.0
74 TraesCS5D01G193200 chr7A 92.135 89 7 0 3547 3635 398924520 398924432 7.120000e-25 126.0
75 TraesCS5D01G193200 chr7A 80.392 102 18 2 621 722 127722670 127722769 7.270000e-10 76.8
76 TraesCS5D01G193200 chr3B 92.941 85 6 0 3551 3635 113517657 113517573 2.560000e-24 124.0
77 TraesCS5D01G193200 chr3B 89.583 96 8 2 3540 3635 680423391 680423298 3.310000e-23 121.0
78 TraesCS5D01G193200 chr7B 90.698 86 8 0 3551 3636 533770822 533770907 1.540000e-21 115.0
79 TraesCS5D01G193200 chr4B 89.655 87 7 1 3550 3636 322668971 322669055 7.170000e-20 110.0
80 TraesCS5D01G193200 chr4B 88.506 87 8 1 3550 3636 322743596 322743680 3.340000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G193200 chr5D 297496276 297503039 6763 False 12491.000000 12491 100.000000 1 6764 1 chr5D.!!$F4 6763
1 TraesCS5D01G193200 chr5D 282835705 282836325 620 True 863.000000 863 91.787000 1 620 1 chr5D.!!$R1 619
2 TraesCS5D01G193200 chr5B 337828012 337836550 8538 False 1267.428571 6599 92.495714 818 6761 7 chr5B.!!$F2 5943
3 TraesCS5D01G193200 chr5A 401745540 401754561 9021 True 2015.750000 3722 94.506750 818 5956 4 chr5A.!!$R1 5138
4 TraesCS5D01G193200 chr5A 535524027 535524703 676 False 604.000000 604 82.997000 6076 6761 1 chr5A.!!$F2 685
5 TraesCS5D01G193200 chr4D 294227149 294227771 622 False 854.000000 854 91.506000 1 620 1 chr4D.!!$F1 619
6 TraesCS5D01G193200 chr4D 76710062 76710683 621 True 837.000000 837 91.026000 1 620 1 chr4D.!!$R1 619
7 TraesCS5D01G193200 chr2D 393604056 393604676 620 False 846.000000 846 91.304000 1 620 1 chr2D.!!$F3 619
8 TraesCS5D01G193200 chr2D 334242547 334243169 622 True 826.000000 826 90.705000 1 620 1 chr2D.!!$R2 619
9 TraesCS5D01G193200 chr2D 98277344 98277963 619 False 824.000000 824 90.660000 1 620 1 chr2D.!!$F2 619
10 TraesCS5D01G193200 chr1D 323789405 323790025 620 False 830.000000 830 90.821000 1 620 1 chr1D.!!$F3 619
11 TraesCS5D01G193200 chr7D 389124080 389124698 618 False 822.000000 822 90.660000 1 620 1 chr7D.!!$F1 619
12 TraesCS5D01G193200 chr6D 343401863 343402481 618 False 822.000000 822 90.675000 1 620 1 chr6D.!!$F1 619
13 TraesCS5D01G193200 chr6D 10969752 10970313 561 True 403.000000 403 79.866000 6171 6764 1 chr6D.!!$R1 593
14 TraesCS5D01G193200 chr3D 140431317 140431987 670 False 505.000000 505 80.608000 6083 6761 1 chr3D.!!$F2 678
15 TraesCS5D01G193200 chr3A 25056620 25057163 543 True 357.000000 357 78.993000 6181 6748 1 chr3A.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
761 769 0.033228 GGTGGAGATGCATCCGAGAG 59.967 60.000 23.06 0.0 42.77 3.20 F
765 773 0.105593 GAGATGCATCCGAGAGCCAA 59.894 55.000 23.06 0.0 0.00 4.52 F
781 789 0.108963 CCAAAACACCACGTCCCCTA 59.891 55.000 0.00 0.0 0.00 3.53 F
936 953 0.321122 CCCTGGCTGTCTCACTTGTC 60.321 60.000 0.00 0.0 0.00 3.18 F
1562 1879 0.322816 GGAGGCTGCACATTCCTCAA 60.323 55.000 16.64 0.0 46.24 3.02 F
1566 1883 0.450983 GCTGCACATTCCTCAAGCTC 59.549 55.000 0.00 0.0 0.00 4.09 F
1913 2231 0.955428 TGCAGCCGTGTTCATTCTCC 60.955 55.000 0.00 0.0 0.00 3.71 F
3328 7675 0.534652 GGCTGTGAGATCTGATGGGC 60.535 60.000 0.00 0.0 0.00 5.36 F
3493 7840 1.302832 CTGGCACCTCCTGTTCCAC 60.303 63.158 0.00 0.0 35.16 4.02 F
5220 9611 0.668535 GCAGACCAACCTGTCCAAAC 59.331 55.000 0.00 0.0 35.83 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 2230 0.099968 CTGGCTGAAATGCACATCGG 59.900 55.000 5.26 5.26 34.04 4.18 R
1913 2231 0.806868 ACTGGCTGAAATGCACATCG 59.193 50.000 0.00 0.00 34.04 3.84 R
2290 2746 1.340889 TGAAATTGCACAGCAGGAACC 59.659 47.619 0.00 0.00 40.61 3.62 R
2325 2781 6.782494 ACAAAATTCCCTCTGTAATTCCAAGT 59.218 34.615 0.00 0.00 0.00 3.16 R
3229 3688 0.833287 ACTCTCGCCCAAGCATACAT 59.167 50.000 0.00 0.00 39.83 2.29 R
3328 7675 1.343075 TGGGGTAGGCTAGAGGTGAAG 60.343 57.143 0.00 0.00 0.00 3.02 R
3715 8105 4.268884 GGATTAAGTCACTGAGTCATTCGC 59.731 45.833 0.00 0.00 0.00 4.70 R
4759 9150 1.681793 GCGAGTGCTCTCAGGGTAATA 59.318 52.381 15.59 0.00 40.44 0.98 R
5727 10118 4.448210 TCCGCATTAAATAGTTCTCCACC 58.552 43.478 0.00 0.00 0.00 4.61 R
6039 12458 1.379642 GGGATTTGCGGCAGAGAAGG 61.380 60.000 1.67 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.684305 TGATCATCAACGACGCTTGAATT 59.316 39.130 13.97 5.38 33.85 2.17
28 29 3.745975 TCATCAACGACGCTTGAATTCTT 59.254 39.130 7.05 0.00 33.85 2.52
59 60 7.653767 AAGAAGTGGTAAGAACTGAAATACG 57.346 36.000 0.00 0.00 0.00 3.06
78 79 2.030805 ACGAAAACTTCTGGAAGCATGC 60.031 45.455 10.51 10.51 41.99 4.06
108 109 9.919416 ATCTATCACATAGCTGATAGTAGATGT 57.081 33.333 16.18 4.99 45.71 3.06
140 141 4.517453 CGTTCATTGTGTCCCTAAAAAGGA 59.483 41.667 0.00 0.00 0.00 3.36
163 164 9.275572 AGGAAGGTATTACTGTTGTTCCTAATA 57.724 33.333 0.00 0.00 40.40 0.98
327 332 4.949856 ACACACTTCTGTTTTCTTGATGGT 59.050 37.500 0.00 0.00 0.00 3.55
345 350 7.214467 TGATGGTTATTCTGGTTTTTCTCAC 57.786 36.000 0.00 0.00 0.00 3.51
364 369 4.787551 TCACATACCTGTTTCACAACCTT 58.212 39.130 0.00 0.00 31.62 3.50
398 403 7.721409 AAACCACCTTTACTTGTCCTTTTAA 57.279 32.000 0.00 0.00 0.00 1.52
417 422 9.434559 CCTTTTAAAACTTATGCTTATAGACGC 57.565 33.333 0.00 0.00 0.00 5.19
428 433 3.312421 GCTTATAGACGCATGCCTTTTGA 59.688 43.478 13.15 0.00 0.00 2.69
443 448 4.632688 GCCTTTTGATTTATGCAATGCACT 59.367 37.500 11.23 2.57 43.04 4.40
615 623 5.649831 ACTAATCTTGTCTTGAATTGGGAGC 59.350 40.000 0.00 0.00 0.00 4.70
620 628 2.106338 TGTCTTGAATTGGGAGCAGTGA 59.894 45.455 0.00 0.00 0.00 3.41
621 629 3.149196 GTCTTGAATTGGGAGCAGTGAA 58.851 45.455 0.00 0.00 0.00 3.18
622 630 3.569701 GTCTTGAATTGGGAGCAGTGAAA 59.430 43.478 0.00 0.00 0.00 2.69
623 631 4.219288 GTCTTGAATTGGGAGCAGTGAAAT 59.781 41.667 0.00 0.00 0.00 2.17
624 632 4.219070 TCTTGAATTGGGAGCAGTGAAATG 59.781 41.667 0.00 0.00 0.00 2.32
625 633 3.499338 TGAATTGGGAGCAGTGAAATGT 58.501 40.909 0.00 0.00 0.00 2.71
626 634 3.896888 TGAATTGGGAGCAGTGAAATGTT 59.103 39.130 0.00 0.00 0.00 2.71
627 635 4.022068 TGAATTGGGAGCAGTGAAATGTTC 60.022 41.667 0.00 0.00 0.00 3.18
628 636 2.655090 TGGGAGCAGTGAAATGTTCA 57.345 45.000 0.00 0.00 37.33 3.18
629 637 2.942804 TGGGAGCAGTGAAATGTTCAA 58.057 42.857 0.00 0.00 42.15 2.69
630 638 3.295093 TGGGAGCAGTGAAATGTTCAAA 58.705 40.909 0.00 0.00 42.15 2.69
631 639 3.068024 TGGGAGCAGTGAAATGTTCAAAC 59.932 43.478 0.00 0.00 42.15 2.93
632 640 3.319122 GGGAGCAGTGAAATGTTCAAACT 59.681 43.478 0.00 0.00 42.15 2.66
633 641 4.540824 GGAGCAGTGAAATGTTCAAACTC 58.459 43.478 0.00 1.03 42.15 3.01
634 642 4.540824 GAGCAGTGAAATGTTCAAACTCC 58.459 43.478 0.00 0.00 42.15 3.85
635 643 3.953612 AGCAGTGAAATGTTCAAACTCCA 59.046 39.130 0.00 0.00 42.15 3.86
636 644 4.586001 AGCAGTGAAATGTTCAAACTCCAT 59.414 37.500 0.00 0.00 42.15 3.41
637 645 4.682860 GCAGTGAAATGTTCAAACTCCATG 59.317 41.667 0.00 0.00 42.15 3.66
638 646 5.507817 GCAGTGAAATGTTCAAACTCCATGA 60.508 40.000 0.00 0.00 42.15 3.07
639 647 6.506147 CAGTGAAATGTTCAAACTCCATGAA 58.494 36.000 0.00 0.00 42.15 2.57
640 648 6.979817 CAGTGAAATGTTCAAACTCCATGAAA 59.020 34.615 0.00 0.00 42.15 2.69
641 649 7.654520 CAGTGAAATGTTCAAACTCCATGAAAT 59.345 33.333 0.00 0.00 42.15 2.17
642 650 8.206189 AGTGAAATGTTCAAACTCCATGAAATT 58.794 29.630 0.00 0.00 42.15 1.82
643 651 8.829612 GTGAAATGTTCAAACTCCATGAAATTT 58.170 29.630 0.00 0.00 42.15 1.82
644 652 8.828644 TGAAATGTTCAAACTCCATGAAATTTG 58.171 29.630 0.00 1.79 38.44 2.32
645 653 8.961294 AAATGTTCAAACTCCATGAAATTTGA 57.039 26.923 11.76 11.76 38.44 2.69
646 654 7.951530 ATGTTCAAACTCCATGAAATTTGAC 57.048 32.000 14.14 11.20 39.96 3.18
647 655 6.871844 TGTTCAAACTCCATGAAATTTGACA 58.128 32.000 14.14 12.78 39.96 3.58
648 656 6.756074 TGTTCAAACTCCATGAAATTTGACAC 59.244 34.615 14.14 14.48 39.96 3.67
649 657 5.518812 TCAAACTCCATGAAATTTGACACG 58.481 37.500 11.76 0.00 36.42 4.49
650 658 4.503741 AACTCCATGAAATTTGACACGG 57.496 40.909 0.00 0.00 0.00 4.94
651 659 3.750371 ACTCCATGAAATTTGACACGGA 58.250 40.909 0.00 0.00 0.00 4.69
652 660 3.502211 ACTCCATGAAATTTGACACGGAC 59.498 43.478 0.00 0.00 0.00 4.79
653 661 3.750371 TCCATGAAATTTGACACGGACT 58.250 40.909 0.00 0.00 0.00 3.85
654 662 4.141287 TCCATGAAATTTGACACGGACTT 58.859 39.130 0.00 0.00 0.00 3.01
655 663 4.215399 TCCATGAAATTTGACACGGACTTC 59.785 41.667 0.00 0.00 0.00 3.01
656 664 4.023279 CCATGAAATTTGACACGGACTTCA 60.023 41.667 0.00 0.00 0.00 3.02
657 665 4.545823 TGAAATTTGACACGGACTTCAC 57.454 40.909 0.00 0.00 0.00 3.18
658 666 3.001838 TGAAATTTGACACGGACTTCACG 59.998 43.478 0.00 0.00 37.36 4.35
659 667 0.865769 ATTTGACACGGACTTCACGC 59.134 50.000 0.00 0.00 34.00 5.34
660 668 0.460459 TTTGACACGGACTTCACGCA 60.460 50.000 0.00 0.00 34.00 5.24
661 669 1.149361 TTGACACGGACTTCACGCAC 61.149 55.000 0.00 0.00 34.00 5.34
662 670 1.590525 GACACGGACTTCACGCACA 60.591 57.895 0.00 0.00 34.00 4.57
663 671 0.944311 GACACGGACTTCACGCACAT 60.944 55.000 0.00 0.00 34.00 3.21
664 672 1.221466 ACACGGACTTCACGCACATG 61.221 55.000 0.00 0.00 34.00 3.21
665 673 0.943835 CACGGACTTCACGCACATGA 60.944 55.000 0.00 0.00 34.00 3.07
666 674 0.667487 ACGGACTTCACGCACATGAG 60.667 55.000 0.00 0.00 34.00 2.90
667 675 1.790387 GGACTTCACGCACATGAGC 59.210 57.895 4.89 4.89 0.00 4.26
668 676 0.950555 GGACTTCACGCACATGAGCA 60.951 55.000 15.56 0.00 0.00 4.26
669 677 1.081892 GACTTCACGCACATGAGCAT 58.918 50.000 15.56 0.00 0.00 3.79
670 678 1.061711 GACTTCACGCACATGAGCATC 59.938 52.381 15.56 0.00 0.00 3.91
671 679 1.338484 ACTTCACGCACATGAGCATCT 60.338 47.619 15.56 0.00 34.92 2.90
672 680 1.736126 CTTCACGCACATGAGCATCTT 59.264 47.619 15.56 0.00 34.92 2.40
673 681 2.671130 TCACGCACATGAGCATCTTA 57.329 45.000 15.56 0.00 34.92 2.10
674 682 2.543641 TCACGCACATGAGCATCTTAG 58.456 47.619 15.56 0.20 34.92 2.18
675 683 1.004185 CACGCACATGAGCATCTTAGC 60.004 52.381 15.56 0.00 34.92 3.09
677 685 1.938577 CGCACATGAGCATCTTAGCTT 59.061 47.619 15.56 0.00 46.75 3.74
678 686 2.033065 CGCACATGAGCATCTTAGCTTC 60.033 50.000 15.56 0.00 46.75 3.86
679 687 2.941064 GCACATGAGCATCTTAGCTTCA 59.059 45.455 10.48 0.00 46.75 3.02
680 688 3.242673 GCACATGAGCATCTTAGCTTCAC 60.243 47.826 10.48 0.00 46.75 3.18
681 689 3.937079 CACATGAGCATCTTAGCTTCACA 59.063 43.478 0.00 0.00 46.75 3.58
682 690 4.393990 CACATGAGCATCTTAGCTTCACAA 59.606 41.667 0.00 0.00 46.75 3.33
683 691 5.005740 ACATGAGCATCTTAGCTTCACAAA 58.994 37.500 0.00 0.00 46.75 2.83
684 692 5.474532 ACATGAGCATCTTAGCTTCACAAAA 59.525 36.000 0.00 0.00 46.75 2.44
685 693 5.618056 TGAGCATCTTAGCTTCACAAAAG 57.382 39.130 0.00 0.00 46.75 2.27
686 694 5.308014 TGAGCATCTTAGCTTCACAAAAGA 58.692 37.500 0.00 0.00 46.75 2.52
687 695 5.764686 TGAGCATCTTAGCTTCACAAAAGAA 59.235 36.000 0.00 0.00 46.75 2.52
688 696 6.432162 TGAGCATCTTAGCTTCACAAAAGAAT 59.568 34.615 0.00 0.00 46.75 2.40
689 697 7.040201 TGAGCATCTTAGCTTCACAAAAGAATT 60.040 33.333 0.00 0.00 46.75 2.17
690 698 7.311408 AGCATCTTAGCTTCACAAAAGAATTC 58.689 34.615 0.00 0.00 43.70 2.17
691 699 7.040201 AGCATCTTAGCTTCACAAAAGAATTCA 60.040 33.333 8.44 0.00 43.70 2.57
692 700 7.272948 GCATCTTAGCTTCACAAAAGAATTCAG 59.727 37.037 8.44 0.00 32.13 3.02
693 701 8.509690 CATCTTAGCTTCACAAAAGAATTCAGA 58.490 33.333 8.44 0.00 32.13 3.27
694 702 8.627208 TCTTAGCTTCACAAAAGAATTCAGAT 57.373 30.769 8.44 0.00 0.00 2.90
695 703 9.071276 TCTTAGCTTCACAAAAGAATTCAGATT 57.929 29.630 8.44 0.00 0.00 2.40
696 704 9.688592 CTTAGCTTCACAAAAGAATTCAGATTT 57.311 29.630 8.44 3.37 0.00 2.17
698 706 8.953368 AGCTTCACAAAAGAATTCAGATTTTT 57.047 26.923 8.44 2.94 0.00 1.94
743 751 8.931385 AAATGAATTTATTGTTCATCTTCCGG 57.069 30.769 0.00 0.00 43.49 5.14
744 752 7.645058 ATGAATTTATTGTTCATCTTCCGGT 57.355 32.000 0.00 0.00 41.19 5.28
745 753 6.851609 TGAATTTATTGTTCATCTTCCGGTG 58.148 36.000 0.00 0.00 31.07 4.94
746 754 5.835113 ATTTATTGTTCATCTTCCGGTGG 57.165 39.130 0.00 0.00 0.00 4.61
747 755 4.561500 TTATTGTTCATCTTCCGGTGGA 57.438 40.909 0.00 0.84 0.00 4.02
748 756 2.472695 TTGTTCATCTTCCGGTGGAG 57.527 50.000 0.00 0.00 31.21 3.86
749 757 1.639722 TGTTCATCTTCCGGTGGAGA 58.360 50.000 0.00 4.27 31.21 3.71
750 758 2.187958 TGTTCATCTTCCGGTGGAGAT 58.812 47.619 0.00 6.63 31.21 2.75
751 759 2.093500 TGTTCATCTTCCGGTGGAGATG 60.093 50.000 25.61 25.61 38.00 2.90
752 760 0.465705 TCATCTTCCGGTGGAGATGC 59.534 55.000 26.22 0.00 37.32 3.91
753 761 0.178767 CATCTTCCGGTGGAGATGCA 59.821 55.000 22.59 0.00 33.88 3.96
754 762 1.135094 ATCTTCCGGTGGAGATGCAT 58.865 50.000 14.10 0.00 31.21 3.96
755 763 0.465705 TCTTCCGGTGGAGATGCATC 59.534 55.000 19.37 19.37 31.21 3.91
756 764 0.533755 CTTCCGGTGGAGATGCATCC 60.534 60.000 23.06 11.39 40.03 3.51
757 765 2.280389 CCGGTGGAGATGCATCCG 60.280 66.667 23.06 18.64 42.77 4.18
758 766 2.796193 CCGGTGGAGATGCATCCGA 61.796 63.158 23.06 9.19 42.77 4.55
759 767 1.300465 CGGTGGAGATGCATCCGAG 60.300 63.158 23.06 5.55 42.77 4.63
760 768 1.738346 CGGTGGAGATGCATCCGAGA 61.738 60.000 23.06 2.16 42.77 4.04
761 769 0.033228 GGTGGAGATGCATCCGAGAG 59.967 60.000 23.06 0.00 42.77 3.20
762 770 0.599728 GTGGAGATGCATCCGAGAGC 60.600 60.000 23.06 5.56 42.77 4.09
763 771 1.005156 GGAGATGCATCCGAGAGCC 60.005 63.158 23.06 11.05 0.00 4.70
764 772 1.744639 GAGATGCATCCGAGAGCCA 59.255 57.895 23.06 0.00 0.00 4.75
765 773 0.105593 GAGATGCATCCGAGAGCCAA 59.894 55.000 23.06 0.00 0.00 4.52
766 774 0.543277 AGATGCATCCGAGAGCCAAA 59.457 50.000 23.06 0.00 0.00 3.28
767 775 1.065199 AGATGCATCCGAGAGCCAAAA 60.065 47.619 23.06 0.00 0.00 2.44
768 776 1.064654 GATGCATCCGAGAGCCAAAAC 59.935 52.381 16.23 0.00 0.00 2.43
769 777 0.250684 TGCATCCGAGAGCCAAAACA 60.251 50.000 0.00 0.00 0.00 2.83
770 778 0.169009 GCATCCGAGAGCCAAAACAC 59.831 55.000 0.00 0.00 0.00 3.32
771 779 0.804989 CATCCGAGAGCCAAAACACC 59.195 55.000 0.00 0.00 0.00 4.16
772 780 0.400213 ATCCGAGAGCCAAAACACCA 59.600 50.000 0.00 0.00 0.00 4.17
773 781 0.534203 TCCGAGAGCCAAAACACCAC 60.534 55.000 0.00 0.00 0.00 4.16
774 782 1.569493 CGAGAGCCAAAACACCACG 59.431 57.895 0.00 0.00 0.00 4.94
775 783 1.157870 CGAGAGCCAAAACACCACGT 61.158 55.000 0.00 0.00 0.00 4.49
776 784 0.586802 GAGAGCCAAAACACCACGTC 59.413 55.000 0.00 0.00 0.00 4.34
777 785 0.818040 AGAGCCAAAACACCACGTCC 60.818 55.000 0.00 0.00 0.00 4.79
778 786 1.792118 GAGCCAAAACACCACGTCCC 61.792 60.000 0.00 0.00 0.00 4.46
779 787 2.852180 GCCAAAACACCACGTCCCC 61.852 63.158 0.00 0.00 0.00 4.81
780 788 1.152839 CCAAAACACCACGTCCCCT 60.153 57.895 0.00 0.00 0.00 4.79
781 789 0.108963 CCAAAACACCACGTCCCCTA 59.891 55.000 0.00 0.00 0.00 3.53
782 790 1.519408 CAAAACACCACGTCCCCTAG 58.481 55.000 0.00 0.00 0.00 3.02
783 791 1.134228 AAAACACCACGTCCCCTAGT 58.866 50.000 0.00 0.00 0.00 2.57
784 792 1.134228 AAACACCACGTCCCCTAGTT 58.866 50.000 0.00 0.00 0.00 2.24
785 793 2.014010 AACACCACGTCCCCTAGTTA 57.986 50.000 0.00 0.00 0.00 2.24
786 794 1.553706 ACACCACGTCCCCTAGTTAG 58.446 55.000 0.00 0.00 0.00 2.34
787 795 1.076024 ACACCACGTCCCCTAGTTAGA 59.924 52.381 0.00 0.00 0.00 2.10
788 796 2.173519 CACCACGTCCCCTAGTTAGAA 58.826 52.381 0.00 0.00 0.00 2.10
789 797 2.165845 CACCACGTCCCCTAGTTAGAAG 59.834 54.545 0.00 0.00 0.00 2.85
790 798 2.225217 ACCACGTCCCCTAGTTAGAAGT 60.225 50.000 0.00 0.00 0.00 3.01
791 799 2.830321 CCACGTCCCCTAGTTAGAAGTT 59.170 50.000 0.00 0.00 0.00 2.66
792 800 3.260128 CCACGTCCCCTAGTTAGAAGTTT 59.740 47.826 0.00 0.00 0.00 2.66
793 801 4.262765 CCACGTCCCCTAGTTAGAAGTTTT 60.263 45.833 0.00 0.00 0.00 2.43
794 802 5.303165 CACGTCCCCTAGTTAGAAGTTTTT 58.697 41.667 0.00 0.00 0.00 1.94
827 835 0.618968 GAGAAAGCTGGGGAGAGGGA 60.619 60.000 0.00 0.00 0.00 4.20
862 871 2.803155 GATGTGGCGTGGGAGCAAGA 62.803 60.000 0.00 0.00 39.27 3.02
877 886 5.185828 GGGAGCAAGACCACTTCAAAATATT 59.814 40.000 0.00 0.00 33.70 1.28
936 953 0.321122 CCCTGGCTGTCTCACTTGTC 60.321 60.000 0.00 0.00 0.00 3.18
938 955 1.287730 CTGGCTGTCTCACTTGTCGC 61.288 60.000 0.00 0.00 0.00 5.19
1181 1487 2.327343 GGTACGCAACCCCGGTTTC 61.327 63.158 0.00 0.00 43.16 2.78
1216 1522 5.962433 TCTCTCGATTCGTAGATTTGGTTT 58.038 37.500 5.89 0.00 35.04 3.27
1223 1529 2.997986 TCGTAGATTTGGTTTTCGAGGC 59.002 45.455 0.00 0.00 0.00 4.70
1224 1530 2.095372 CGTAGATTTGGTTTTCGAGGCC 59.905 50.000 0.00 0.00 0.00 5.19
1225 1531 1.165270 AGATTTGGTTTTCGAGGCCG 58.835 50.000 0.00 0.00 37.07 6.13
1281 1587 2.787129 TGCGAGCGTATTGTTAGATTCG 59.213 45.455 0.00 0.00 0.00 3.34
1288 1594 1.157870 ATTGTTAGATTCGGGCGCGG 61.158 55.000 23.74 4.77 0.00 6.46
1385 1695 1.736645 CGCTGGATTCGTGTTCCGT 60.737 57.895 0.00 0.00 35.94 4.69
1440 1757 4.083908 GGCAATACCAATGTGCTTTGTTTG 60.084 41.667 0.00 0.00 38.36 2.93
1444 1761 7.470900 CAATACCAATGTGCTTTGTTTGTTTT 58.529 30.769 0.00 0.00 0.00 2.43
1454 1771 5.799936 TGCTTTGTTTGTTTTTCTCTCTTCG 59.200 36.000 0.00 0.00 0.00 3.79
1532 1849 1.559682 ACTGGACAGTTCTGTGTGGTT 59.440 47.619 10.29 0.00 38.83 3.67
1536 1853 5.071250 ACTGGACAGTTCTGTGTGGTTAATA 59.929 40.000 10.29 0.00 38.83 0.98
1549 1866 1.697982 GGTTAATACCGATGGGAGGCT 59.302 52.381 0.00 0.00 34.01 4.58
1550 1867 2.550208 GGTTAATACCGATGGGAGGCTG 60.550 54.545 0.00 0.00 34.01 4.85
1551 1868 0.685097 TAATACCGATGGGAGGCTGC 59.315 55.000 0.00 0.00 36.97 5.25
1552 1869 1.344953 AATACCGATGGGAGGCTGCA 61.345 55.000 8.68 0.00 36.97 4.41
1553 1870 2.044806 ATACCGATGGGAGGCTGCAC 62.045 60.000 8.68 0.00 36.97 4.57
1554 1871 4.100084 CCGATGGGAGGCTGCACA 62.100 66.667 8.68 3.91 34.06 4.57
1555 1872 2.191375 CGATGGGAGGCTGCACAT 59.809 61.111 8.68 8.95 0.00 3.21
1556 1873 1.452651 CGATGGGAGGCTGCACATT 60.453 57.895 8.68 0.00 0.00 2.71
1557 1874 1.442526 CGATGGGAGGCTGCACATTC 61.443 60.000 8.68 0.00 0.00 2.67
1558 1875 1.076485 ATGGGAGGCTGCACATTCC 60.076 57.895 8.68 2.66 0.00 3.01
1559 1876 1.578215 ATGGGAGGCTGCACATTCCT 61.578 55.000 8.68 0.00 0.00 3.36
1560 1877 1.452833 GGGAGGCTGCACATTCCTC 60.453 63.158 8.68 9.79 44.28 3.71
1561 1878 1.300963 GGAGGCTGCACATTCCTCA 59.699 57.895 16.64 0.00 46.24 3.86
1562 1879 0.322816 GGAGGCTGCACATTCCTCAA 60.323 55.000 16.64 0.00 46.24 3.02
1563 1880 1.093159 GAGGCTGCACATTCCTCAAG 58.907 55.000 0.50 0.00 44.38 3.02
1564 1881 0.964358 AGGCTGCACATTCCTCAAGC 60.964 55.000 0.50 0.00 0.00 4.01
1565 1882 0.964358 GGCTGCACATTCCTCAAGCT 60.964 55.000 0.50 0.00 0.00 3.74
1566 1883 0.450983 GCTGCACATTCCTCAAGCTC 59.549 55.000 0.00 0.00 0.00 4.09
1567 1884 1.949547 GCTGCACATTCCTCAAGCTCT 60.950 52.381 0.00 0.00 0.00 4.09
1568 1885 1.738350 CTGCACATTCCTCAAGCTCTG 59.262 52.381 0.00 0.00 0.00 3.35
1569 1886 1.072806 TGCACATTCCTCAAGCTCTGT 59.927 47.619 0.00 0.00 0.00 3.41
1570 1887 2.302733 TGCACATTCCTCAAGCTCTGTA 59.697 45.455 0.00 0.00 0.00 2.74
1571 1888 3.054875 TGCACATTCCTCAAGCTCTGTAT 60.055 43.478 0.00 0.00 0.00 2.29
1572 1889 3.311871 GCACATTCCTCAAGCTCTGTATG 59.688 47.826 0.00 0.00 0.00 2.39
1573 1890 3.875727 CACATTCCTCAAGCTCTGTATGG 59.124 47.826 0.00 0.00 0.00 2.74
1574 1891 3.521126 ACATTCCTCAAGCTCTGTATGGT 59.479 43.478 0.00 0.00 0.00 3.55
1581 1898 5.163364 CCTCAAGCTCTGTATGGTGAATACT 60.163 44.000 0.00 0.00 41.62 2.12
1589 1906 5.305386 TCTGTATGGTGAATACTGATGGGAG 59.695 44.000 2.16 0.00 41.91 4.30
1681 1999 6.506500 ACTTTCAGCATGTCAAAGGATTAG 57.493 37.500 14.05 0.00 37.40 1.73
1739 2057 5.640357 TCCTCGTTAGTTTGCATACGAAATT 59.360 36.000 4.56 0.00 41.77 1.82
1770 2088 7.209471 TGTTTGACCTGTTAATTATGGTGAC 57.791 36.000 9.21 6.75 32.30 3.67
1890 2208 5.019498 GCCATCGTTTACATTTGTTACTCG 58.981 41.667 0.00 0.00 0.00 4.18
1912 2230 1.063174 GATGCAGCCGTGTTCATTCTC 59.937 52.381 0.00 0.00 0.00 2.87
1913 2231 0.955428 TGCAGCCGTGTTCATTCTCC 60.955 55.000 0.00 0.00 0.00 3.71
1918 2236 2.007049 GCCGTGTTCATTCTCCGATGT 61.007 52.381 0.00 0.00 0.00 3.06
1921 2239 2.076100 GTGTTCATTCTCCGATGTGCA 58.924 47.619 0.00 0.00 0.00 4.57
1952 2270 4.489771 CGGATCCAGTGGGGGTGC 62.490 72.222 13.41 0.44 37.22 5.01
1986 2436 2.556559 GGCATCCCCTCCAAAGTACAAA 60.557 50.000 0.00 0.00 0.00 2.83
2290 2746 6.035866 CAGCAAGCATTAGTCTCTACTTTCTG 59.964 42.308 0.00 0.00 37.15 3.02
2298 2754 3.259625 AGTCTCTACTTTCTGGTTCCTGC 59.740 47.826 0.00 0.00 29.00 4.85
2508 2964 5.599999 ACGAGCCTTTCATATCTAGTTGT 57.400 39.130 0.00 0.00 0.00 3.32
2565 3021 2.814097 GCCTGCAGGGTTTCAAACTAGA 60.814 50.000 33.46 0.00 37.43 2.43
2653 3110 5.499004 TTACTACAGCAAGAAACCCTGAT 57.501 39.130 0.00 0.00 0.00 2.90
3322 7669 2.756840 TGAGTTGGCTGTGAGATCTG 57.243 50.000 0.00 0.00 0.00 2.90
3328 7675 0.534652 GGCTGTGAGATCTGATGGGC 60.535 60.000 0.00 0.00 0.00 5.36
3357 7704 4.169666 TCTAGCCTACCCCAACTTGTTTA 58.830 43.478 0.00 0.00 0.00 2.01
3382 7729 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
3383 7730 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
3384 7731 5.867174 ACTAAAGGCTTTGTTGTTGTTGTTC 59.133 36.000 22.32 0.00 0.00 3.18
3493 7840 1.302832 CTGGCACCTCCTGTTCCAC 60.303 63.158 0.00 0.00 35.16 4.02
3715 8105 8.961092 CAATTTCAGTAATGTTTTCTGTCTGTG 58.039 33.333 0.00 0.00 0.00 3.66
3740 8130 6.102663 CGAATGACTCAGTGACTTAATCCTT 58.897 40.000 0.00 0.00 0.00 3.36
4063 8453 5.248477 TCAGGTACCTTCATTTGTAGAGCTT 59.752 40.000 13.15 0.00 0.00 3.74
4188 8578 3.118847 TCAGGTGAAGATGATCTGTCAGC 60.119 47.826 19.57 19.57 41.02 4.26
4309 8699 7.201145 TGTTTTCCTATCGAGTGCTATTACTC 58.799 38.462 0.00 0.00 42.83 2.59
4394 8785 7.888021 TGAGAATGAATGGTTATGTGGTTTAGT 59.112 33.333 0.00 0.00 0.00 2.24
4759 9150 3.577848 TGCAGCTGTCCACCATTTTTATT 59.422 39.130 16.64 0.00 0.00 1.40
5216 9607 1.205893 CTAGAGCAGACCAACCTGTCC 59.794 57.143 0.00 0.00 35.83 4.02
5220 9611 0.668535 GCAGACCAACCTGTCCAAAC 59.331 55.000 0.00 0.00 35.83 2.93
5740 10131 3.383698 TCCTCGAGGTGGAGAACTATT 57.616 47.619 30.17 0.00 36.08 1.73
5741 10132 3.709587 TCCTCGAGGTGGAGAACTATTT 58.290 45.455 30.17 0.00 36.08 1.40
5920 12330 2.562296 TCAGATCCCTTAAAGGCCTGT 58.438 47.619 5.69 1.77 32.73 4.00
5921 12331 2.505819 TCAGATCCCTTAAAGGCCTGTC 59.494 50.000 5.69 0.00 32.73 3.51
5928 12338 1.464997 CTTAAAGGCCTGTCGAACTGC 59.535 52.381 5.69 0.00 0.00 4.40
5935 12345 0.110644 CCTGTCGAACTGCGCTTTTC 60.111 55.000 9.73 10.21 40.61 2.29
5936 12346 0.110644 CTGTCGAACTGCGCTTTTCC 60.111 55.000 9.73 0.27 40.61 3.13
5947 12357 1.794076 GCGCTTTTCCGGCTGATTTAC 60.794 52.381 0.00 0.00 0.00 2.01
5974 12384 1.512694 CCAAAAATCTGGCCCGAGC 59.487 57.895 0.00 0.00 38.76 5.03
5980 12390 0.394565 AATCTGGCCCGAGCAGATAC 59.605 55.000 0.00 0.00 42.56 2.24
6010 12420 1.808133 GCCTGGATATATGCTAGCGCC 60.808 57.143 10.77 5.05 34.43 6.53
6046 12465 0.800239 TCCCTCCCCTTTCCTTCTCT 59.200 55.000 0.00 0.00 0.00 3.10
6059 12478 1.378514 TTCTCTGCCGCAAATCCCC 60.379 57.895 0.00 0.00 0.00 4.81
6078 12549 2.689034 CCTCTCCCCTTCCGGCTT 60.689 66.667 0.00 0.00 0.00 4.35
6158 12630 2.250939 TGGCGACGGCAAGAGTTTG 61.251 57.895 22.91 0.00 42.47 2.93
6179 12687 3.823330 GATCGCGGTGGAGACGGT 61.823 66.667 6.13 0.00 0.00 4.83
6336 12847 1.377333 GCTTGGGCTAGCTTCCGTT 60.377 57.895 15.72 0.00 38.15 4.44
6364 12875 0.931005 GACATCTTCGTTCCGGCATC 59.069 55.000 0.00 0.00 0.00 3.91
6366 12877 0.806102 CATCTTCGTTCCGGCATCGT 60.806 55.000 0.00 0.00 33.95 3.73
6376 12887 1.444724 CGGCATCGTGACACCGTAA 60.445 57.895 0.00 0.00 40.77 3.18
6495 13008 3.334054 AGGCAACCCTCTGCTCCC 61.334 66.667 0.00 0.00 42.25 4.30
6553 13066 2.563798 CCAGCCACGGCAACAACAT 61.564 57.895 11.35 0.00 44.88 2.71
6556 13069 2.612567 GCCACGGCAACAACATCGA 61.613 57.895 2.36 0.00 41.49 3.59
6653 13168 7.908453 AGTTTGTACTAAAAGCTCCTCTATGT 58.092 34.615 0.00 0.00 31.21 2.29
6761 13502 7.484975 TGTTTAAATTTGTATTCTATGCGGGG 58.515 34.615 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.871125 AGTTCTTACCACTTCTTTCATCTAAGA 58.129 33.333 0.00 0.00 32.50 2.10
28 29 8.190326 TCAGTTCTTACCACTTCTTTCATCTA 57.810 34.615 0.00 0.00 0.00 1.98
59 60 3.648339 TGCATGCTTCCAGAAGTTTTC 57.352 42.857 20.33 0.00 40.45 2.29
108 109 3.395639 GACACAATGAACGGGACTTACA 58.604 45.455 0.00 0.00 0.00 2.41
327 332 7.942341 ACAGGTATGTGAGAAAAACCAGAATAA 59.058 33.333 0.00 0.00 38.57 1.40
364 369 6.256643 AGTAAAGGTGGTTTTCTCTTGGTA 57.743 37.500 0.00 0.00 0.00 3.25
417 422 5.065346 TGCATTGCATAAATCAAAAGGCATG 59.935 36.000 7.38 0.00 31.71 4.06
560 568 6.808704 CACATCTCTACAAAACTCGATCAAGA 59.191 38.462 0.00 0.00 0.00 3.02
615 623 6.075762 TCATGGAGTTTGAACATTTCACTG 57.924 37.500 0.00 0.00 39.87 3.66
620 628 8.829612 GTCAAATTTCATGGAGTTTGAACATTT 58.170 29.630 22.27 0.00 40.85 2.32
621 629 7.986320 TGTCAAATTTCATGGAGTTTGAACATT 59.014 29.630 22.27 0.00 40.85 2.71
622 630 7.439056 GTGTCAAATTTCATGGAGTTTGAACAT 59.561 33.333 22.27 0.00 40.85 2.71
623 631 6.756074 GTGTCAAATTTCATGGAGTTTGAACA 59.244 34.615 22.27 18.78 40.85 3.18
624 632 6.074888 CGTGTCAAATTTCATGGAGTTTGAAC 60.075 38.462 22.27 19.48 40.85 3.18
625 633 5.976534 CGTGTCAAATTTCATGGAGTTTGAA 59.023 36.000 22.27 12.30 40.85 2.69
626 634 5.507149 CCGTGTCAAATTTCATGGAGTTTGA 60.507 40.000 18.09 18.09 41.65 2.69
627 635 4.681025 CCGTGTCAAATTTCATGGAGTTTG 59.319 41.667 14.30 14.30 41.65 2.93
628 636 4.582656 TCCGTGTCAAATTTCATGGAGTTT 59.417 37.500 14.03 0.00 42.53 2.66
629 637 4.023193 GTCCGTGTCAAATTTCATGGAGTT 60.023 41.667 17.08 0.00 46.24 3.01
630 638 3.502211 GTCCGTGTCAAATTTCATGGAGT 59.498 43.478 17.08 0.00 46.24 3.85
631 639 3.753272 AGTCCGTGTCAAATTTCATGGAG 59.247 43.478 17.08 0.00 46.24 3.86
632 640 3.750371 AGTCCGTGTCAAATTTCATGGA 58.250 40.909 14.03 14.03 44.36 3.41
633 641 4.023279 TGAAGTCCGTGTCAAATTTCATGG 60.023 41.667 10.53 10.53 40.80 3.66
634 642 4.911610 GTGAAGTCCGTGTCAAATTTCATG 59.088 41.667 0.00 0.00 0.00 3.07
635 643 4.319477 CGTGAAGTCCGTGTCAAATTTCAT 60.319 41.667 0.00 0.00 0.00 2.57
636 644 3.001838 CGTGAAGTCCGTGTCAAATTTCA 59.998 43.478 0.00 0.00 0.00 2.69
637 645 3.541711 CGTGAAGTCCGTGTCAAATTTC 58.458 45.455 0.00 0.00 0.00 2.17
638 646 2.286772 GCGTGAAGTCCGTGTCAAATTT 60.287 45.455 0.00 0.00 0.00 1.82
639 647 1.263217 GCGTGAAGTCCGTGTCAAATT 59.737 47.619 0.00 0.00 0.00 1.82
640 648 0.865769 GCGTGAAGTCCGTGTCAAAT 59.134 50.000 0.00 0.00 0.00 2.32
641 649 0.460459 TGCGTGAAGTCCGTGTCAAA 60.460 50.000 0.00 0.00 0.00 2.69
642 650 1.142097 TGCGTGAAGTCCGTGTCAA 59.858 52.632 0.00 0.00 0.00 3.18
643 651 1.590525 GTGCGTGAAGTCCGTGTCA 60.591 57.895 0.00 0.00 0.00 3.58
644 652 0.944311 ATGTGCGTGAAGTCCGTGTC 60.944 55.000 0.00 0.00 0.00 3.67
645 653 1.069090 ATGTGCGTGAAGTCCGTGT 59.931 52.632 0.00 0.00 0.00 4.49
646 654 0.943835 TCATGTGCGTGAAGTCCGTG 60.944 55.000 0.00 0.00 0.00 4.94
647 655 0.667487 CTCATGTGCGTGAAGTCCGT 60.667 55.000 0.00 0.00 0.00 4.69
648 656 1.959899 GCTCATGTGCGTGAAGTCCG 61.960 60.000 3.67 0.00 0.00 4.79
649 657 0.950555 TGCTCATGTGCGTGAAGTCC 60.951 55.000 14.53 0.00 35.36 3.85
650 658 1.061711 GATGCTCATGTGCGTGAAGTC 59.938 52.381 18.62 0.95 35.36 3.01
651 659 1.081892 GATGCTCATGTGCGTGAAGT 58.918 50.000 18.62 0.00 35.36 3.01
652 660 1.366679 AGATGCTCATGTGCGTGAAG 58.633 50.000 18.62 0.00 35.36 3.02
653 661 1.812235 AAGATGCTCATGTGCGTGAA 58.188 45.000 18.62 0.00 35.36 3.18
654 662 2.543641 CTAAGATGCTCATGTGCGTGA 58.456 47.619 18.62 0.00 35.36 4.35
655 663 1.004185 GCTAAGATGCTCATGTGCGTG 60.004 52.381 18.62 6.01 35.36 5.34
656 664 1.134580 AGCTAAGATGCTCATGTGCGT 60.135 47.619 14.05 14.05 39.34 5.24
657 665 1.579698 AGCTAAGATGCTCATGTGCG 58.420 50.000 14.53 1.05 39.34 5.34
658 666 2.941064 TGAAGCTAAGATGCTCATGTGC 59.059 45.455 12.78 12.78 43.24 4.57
659 667 3.937079 TGTGAAGCTAAGATGCTCATGTG 59.063 43.478 0.00 0.00 43.24 3.21
660 668 4.212143 TGTGAAGCTAAGATGCTCATGT 57.788 40.909 0.00 0.00 43.24 3.21
661 669 5.556355 TTTGTGAAGCTAAGATGCTCATG 57.444 39.130 0.00 0.00 43.24 3.07
662 670 5.942236 TCTTTTGTGAAGCTAAGATGCTCAT 59.058 36.000 0.00 0.00 43.24 2.90
663 671 5.308014 TCTTTTGTGAAGCTAAGATGCTCA 58.692 37.500 0.00 0.00 43.24 4.26
664 672 5.869753 TCTTTTGTGAAGCTAAGATGCTC 57.130 39.130 0.00 0.00 43.24 4.26
665 673 6.830873 ATTCTTTTGTGAAGCTAAGATGCT 57.169 33.333 0.00 0.00 46.40 3.79
666 674 7.086376 TGAATTCTTTTGTGAAGCTAAGATGC 58.914 34.615 7.05 0.00 0.00 3.91
667 675 8.509690 TCTGAATTCTTTTGTGAAGCTAAGATG 58.490 33.333 7.05 0.00 0.00 2.90
668 676 8.627208 TCTGAATTCTTTTGTGAAGCTAAGAT 57.373 30.769 7.05 0.00 0.00 2.40
669 677 8.627208 ATCTGAATTCTTTTGTGAAGCTAAGA 57.373 30.769 7.05 0.00 0.00 2.10
670 678 9.688592 AAATCTGAATTCTTTTGTGAAGCTAAG 57.311 29.630 7.05 0.00 0.00 2.18
673 681 8.953368 AAAAATCTGAATTCTTTTGTGAAGCT 57.047 26.923 7.05 0.00 0.00 3.74
718 726 8.531146 ACCGGAAGATGAACAATAAATTCATTT 58.469 29.630 9.46 0.00 44.85 2.32
719 727 7.975616 CACCGGAAGATGAACAATAAATTCATT 59.024 33.333 9.46 0.00 44.85 2.57
720 728 7.416664 CCACCGGAAGATGAACAATAAATTCAT 60.417 37.037 9.46 0.00 46.93 2.57
721 729 6.127758 CCACCGGAAGATGAACAATAAATTCA 60.128 38.462 9.46 0.00 40.25 2.57
722 730 6.094881 TCCACCGGAAGATGAACAATAAATTC 59.905 38.462 9.46 0.00 0.00 2.17
723 731 5.949354 TCCACCGGAAGATGAACAATAAATT 59.051 36.000 9.46 0.00 0.00 1.82
724 732 5.505780 TCCACCGGAAGATGAACAATAAAT 58.494 37.500 9.46 0.00 0.00 1.40
725 733 4.912586 TCCACCGGAAGATGAACAATAAA 58.087 39.130 9.46 0.00 0.00 1.40
726 734 4.224147 TCTCCACCGGAAGATGAACAATAA 59.776 41.667 9.46 0.00 0.00 1.40
727 735 3.772572 TCTCCACCGGAAGATGAACAATA 59.227 43.478 9.46 0.00 0.00 1.90
728 736 2.571653 TCTCCACCGGAAGATGAACAAT 59.428 45.455 9.46 0.00 0.00 2.71
729 737 1.974957 TCTCCACCGGAAGATGAACAA 59.025 47.619 9.46 0.00 0.00 2.83
730 738 1.639722 TCTCCACCGGAAGATGAACA 58.360 50.000 9.46 0.00 0.00 3.18
731 739 2.555199 CATCTCCACCGGAAGATGAAC 58.445 52.381 27.38 0.00 38.45 3.18
732 740 1.134401 GCATCTCCACCGGAAGATGAA 60.134 52.381 31.72 11.63 38.45 2.57
733 741 0.465705 GCATCTCCACCGGAAGATGA 59.534 55.000 31.72 18.10 38.45 2.92
734 742 0.178767 TGCATCTCCACCGGAAGATG 59.821 55.000 27.21 27.21 38.80 2.90
735 743 1.071385 GATGCATCTCCACCGGAAGAT 59.929 52.381 19.70 10.73 0.00 2.40
736 744 0.465705 GATGCATCTCCACCGGAAGA 59.534 55.000 19.70 8.56 0.00 2.87
737 745 0.533755 GGATGCATCTCCACCGGAAG 60.534 60.000 25.28 2.17 35.24 3.46
738 746 1.526887 GGATGCATCTCCACCGGAA 59.473 57.895 25.28 0.00 35.24 4.30
739 747 2.796193 CGGATGCATCTCCACCGGA 61.796 63.158 25.28 0.00 39.92 5.14
740 748 2.280389 CGGATGCATCTCCACCGG 60.280 66.667 25.28 0.00 39.92 5.28
741 749 1.300465 CTCGGATGCATCTCCACCG 60.300 63.158 25.28 20.19 44.09 4.94
742 750 0.033228 CTCTCGGATGCATCTCCACC 59.967 60.000 25.28 8.92 34.78 4.61
743 751 0.599728 GCTCTCGGATGCATCTCCAC 60.600 60.000 25.28 8.51 34.78 4.02
744 752 1.744639 GCTCTCGGATGCATCTCCA 59.255 57.895 25.28 9.27 34.78 3.86
745 753 1.005156 GGCTCTCGGATGCATCTCC 60.005 63.158 25.28 11.49 0.00 3.71
746 754 0.105593 TTGGCTCTCGGATGCATCTC 59.894 55.000 25.28 14.63 0.00 2.75
747 755 0.543277 TTTGGCTCTCGGATGCATCT 59.457 50.000 25.28 0.00 0.00 2.90
748 756 1.064654 GTTTTGGCTCTCGGATGCATC 59.935 52.381 18.81 18.81 0.00 3.91
749 757 1.098050 GTTTTGGCTCTCGGATGCAT 58.902 50.000 0.00 0.00 0.00 3.96
750 758 0.250684 TGTTTTGGCTCTCGGATGCA 60.251 50.000 0.00 0.00 0.00 3.96
751 759 0.169009 GTGTTTTGGCTCTCGGATGC 59.831 55.000 0.00 0.00 0.00 3.91
752 760 0.804989 GGTGTTTTGGCTCTCGGATG 59.195 55.000 0.00 0.00 0.00 3.51
753 761 0.400213 TGGTGTTTTGGCTCTCGGAT 59.600 50.000 0.00 0.00 0.00 4.18
754 762 0.534203 GTGGTGTTTTGGCTCTCGGA 60.534 55.000 0.00 0.00 0.00 4.55
755 763 1.841663 CGTGGTGTTTTGGCTCTCGG 61.842 60.000 0.00 0.00 0.00 4.63
756 764 1.157870 ACGTGGTGTTTTGGCTCTCG 61.158 55.000 0.00 0.00 0.00 4.04
757 765 0.586802 GACGTGGTGTTTTGGCTCTC 59.413 55.000 0.00 0.00 0.00 3.20
758 766 0.818040 GGACGTGGTGTTTTGGCTCT 60.818 55.000 0.00 0.00 0.00 4.09
759 767 1.652563 GGACGTGGTGTTTTGGCTC 59.347 57.895 0.00 0.00 0.00 4.70
760 768 1.826487 GGGACGTGGTGTTTTGGCT 60.826 57.895 0.00 0.00 0.00 4.75
761 769 2.725641 GGGACGTGGTGTTTTGGC 59.274 61.111 0.00 0.00 0.00 4.52
762 770 0.108963 TAGGGGACGTGGTGTTTTGG 59.891 55.000 0.00 0.00 0.00 3.28
763 771 1.202722 ACTAGGGGACGTGGTGTTTTG 60.203 52.381 0.00 0.00 36.37 2.44
764 772 1.134228 ACTAGGGGACGTGGTGTTTT 58.866 50.000 0.00 0.00 36.37 2.43
765 773 1.134228 AACTAGGGGACGTGGTGTTT 58.866 50.000 0.00 0.00 38.10 2.83
766 774 1.897802 CTAACTAGGGGACGTGGTGTT 59.102 52.381 0.00 0.00 38.10 3.32
767 775 1.076024 TCTAACTAGGGGACGTGGTGT 59.924 52.381 0.00 0.00 38.10 4.16
768 776 1.843368 TCTAACTAGGGGACGTGGTG 58.157 55.000 0.00 0.00 38.10 4.17
769 777 2.225217 ACTTCTAACTAGGGGACGTGGT 60.225 50.000 0.00 0.00 40.22 4.16
770 778 2.454538 ACTTCTAACTAGGGGACGTGG 58.545 52.381 0.00 0.00 0.00 4.94
771 779 4.532314 AAACTTCTAACTAGGGGACGTG 57.468 45.455 0.00 0.00 0.00 4.49
772 780 5.557576 AAAAACTTCTAACTAGGGGACGT 57.442 39.130 0.00 0.00 0.00 4.34
791 799 9.520204 CAGCTTTCTCACTTTGATAAAGAAAAA 57.480 29.630 14.78 3.08 40.73 1.94
792 800 8.137437 CCAGCTTTCTCACTTTGATAAAGAAAA 58.863 33.333 14.78 3.34 40.73 2.29
793 801 7.255590 CCCAGCTTTCTCACTTTGATAAAGAAA 60.256 37.037 14.78 4.11 40.73 2.52
794 802 6.207417 CCCAGCTTTCTCACTTTGATAAAGAA 59.793 38.462 14.78 0.00 40.73 2.52
795 803 5.707298 CCCAGCTTTCTCACTTTGATAAAGA 59.293 40.000 14.78 0.00 40.73 2.52
796 804 5.105997 CCCCAGCTTTCTCACTTTGATAAAG 60.106 44.000 8.82 8.82 41.01 1.85
797 805 4.766891 CCCCAGCTTTCTCACTTTGATAAA 59.233 41.667 0.00 0.00 0.00 1.40
798 806 4.042809 TCCCCAGCTTTCTCACTTTGATAA 59.957 41.667 0.00 0.00 0.00 1.75
799 807 3.587061 TCCCCAGCTTTCTCACTTTGATA 59.413 43.478 0.00 0.00 0.00 2.15
800 808 2.376518 TCCCCAGCTTTCTCACTTTGAT 59.623 45.455 0.00 0.00 0.00 2.57
801 809 1.774254 TCCCCAGCTTTCTCACTTTGA 59.226 47.619 0.00 0.00 0.00 2.69
802 810 2.157738 CTCCCCAGCTTTCTCACTTTG 58.842 52.381 0.00 0.00 0.00 2.77
803 811 2.039613 CTCTCCCCAGCTTTCTCACTTT 59.960 50.000 0.00 0.00 0.00 2.66
804 812 1.627834 CTCTCCCCAGCTTTCTCACTT 59.372 52.381 0.00 0.00 0.00 3.16
805 813 1.274712 CTCTCCCCAGCTTTCTCACT 58.725 55.000 0.00 0.00 0.00 3.41
806 814 0.251634 CCTCTCCCCAGCTTTCTCAC 59.748 60.000 0.00 0.00 0.00 3.51
807 815 0.911525 CCCTCTCCCCAGCTTTCTCA 60.912 60.000 0.00 0.00 0.00 3.27
808 816 0.618968 TCCCTCTCCCCAGCTTTCTC 60.619 60.000 0.00 0.00 0.00 2.87
809 817 0.178861 TTCCCTCTCCCCAGCTTTCT 60.179 55.000 0.00 0.00 0.00 2.52
810 818 0.254462 CTTCCCTCTCCCCAGCTTTC 59.746 60.000 0.00 0.00 0.00 2.62
811 819 1.210885 CCTTCCCTCTCCCCAGCTTT 61.211 60.000 0.00 0.00 0.00 3.51
812 820 1.617839 CCTTCCCTCTCCCCAGCTT 60.618 63.158 0.00 0.00 0.00 3.74
813 821 2.041928 CCTTCCCTCTCCCCAGCT 59.958 66.667 0.00 0.00 0.00 4.24
814 822 3.093172 CCCTTCCCTCTCCCCAGC 61.093 72.222 0.00 0.00 0.00 4.85
815 823 2.367512 CCCCTTCCCTCTCCCCAG 60.368 72.222 0.00 0.00 0.00 4.45
816 824 4.760220 GCCCCTTCCCTCTCCCCA 62.760 72.222 0.00 0.00 0.00 4.96
834 842 3.554692 CGCCACATCTCGCCGTTC 61.555 66.667 0.00 0.00 0.00 3.95
840 848 2.202797 CTCCCACGCCACATCTCG 60.203 66.667 0.00 0.00 0.00 4.04
846 854 3.050275 GTCTTGCTCCCACGCCAC 61.050 66.667 0.00 0.00 0.00 5.01
900 917 4.141251 GCCAGGGGTAGATTAGGAATTCAA 60.141 45.833 7.93 0.00 0.00 2.69
936 953 1.805945 GAGTGCCCACGTCTTAGCG 60.806 63.158 0.00 0.00 36.20 4.26
938 955 1.153823 CGGAGTGCCCACGTCTTAG 60.154 63.158 0.00 0.00 36.20 2.18
946 966 3.866379 AATTGCTGCGGAGTGCCCA 62.866 57.895 5.62 0.00 45.60 5.36
1288 1594 1.298190 CTACGAGCCTACGCGGAAC 60.298 63.158 12.47 0.00 44.04 3.62
1385 1695 0.036388 GCCACTCCGTCTGAATCCAA 60.036 55.000 0.00 0.00 0.00 3.53
1440 1757 7.007456 CACAGAACAAAACGAAGAGAGAAAAAC 59.993 37.037 0.00 0.00 0.00 2.43
1444 1761 4.034048 GCACAGAACAAAACGAAGAGAGAA 59.966 41.667 0.00 0.00 0.00 2.87
1454 1771 5.229921 TGTTGACTAGCACAGAACAAAAC 57.770 39.130 0.00 0.00 0.00 2.43
1532 1849 0.685097 GCAGCCTCCCATCGGTATTA 59.315 55.000 0.00 0.00 0.00 0.98
1536 1853 4.101448 GTGCAGCCTCCCATCGGT 62.101 66.667 0.00 0.00 0.00 4.69
1549 1866 1.072806 ACAGAGCTTGAGGAATGTGCA 59.927 47.619 0.00 0.00 0.00 4.57
1550 1867 1.818642 ACAGAGCTTGAGGAATGTGC 58.181 50.000 0.00 0.00 0.00 4.57
1551 1868 3.875727 CCATACAGAGCTTGAGGAATGTG 59.124 47.826 0.00 0.00 0.00 3.21
1552 1869 3.521126 ACCATACAGAGCTTGAGGAATGT 59.479 43.478 0.00 0.00 0.00 2.71
1553 1870 3.875727 CACCATACAGAGCTTGAGGAATG 59.124 47.826 0.00 0.00 0.00 2.67
1554 1871 3.776969 TCACCATACAGAGCTTGAGGAAT 59.223 43.478 0.00 0.00 0.00 3.01
1555 1872 3.173151 TCACCATACAGAGCTTGAGGAA 58.827 45.455 0.00 0.00 0.00 3.36
1556 1873 2.820178 TCACCATACAGAGCTTGAGGA 58.180 47.619 0.00 0.00 0.00 3.71
1557 1874 3.616956 TTCACCATACAGAGCTTGAGG 57.383 47.619 0.00 0.00 0.00 3.86
1558 1875 5.752472 CAGTATTCACCATACAGAGCTTGAG 59.248 44.000 0.00 0.00 40.49 3.02
1559 1876 5.422012 TCAGTATTCACCATACAGAGCTTGA 59.578 40.000 0.00 0.00 40.49 3.02
1560 1877 5.664457 TCAGTATTCACCATACAGAGCTTG 58.336 41.667 0.00 0.00 40.49 4.01
1561 1878 5.939764 TCAGTATTCACCATACAGAGCTT 57.060 39.130 0.00 0.00 40.49 3.74
1562 1879 5.221601 CCATCAGTATTCACCATACAGAGCT 60.222 44.000 0.00 0.00 40.49 4.09
1563 1880 4.993584 CCATCAGTATTCACCATACAGAGC 59.006 45.833 0.00 0.00 40.49 4.09
1564 1881 5.305386 TCCCATCAGTATTCACCATACAGAG 59.695 44.000 0.00 0.00 40.49 3.35
1565 1882 5.215845 TCCCATCAGTATTCACCATACAGA 58.784 41.667 0.00 0.00 40.49 3.41
1566 1883 5.512060 CCTCCCATCAGTATTCACCATACAG 60.512 48.000 0.00 0.00 40.49 2.74
1567 1884 4.347876 CCTCCCATCAGTATTCACCATACA 59.652 45.833 0.00 0.00 40.49 2.29
1568 1885 4.348168 ACCTCCCATCAGTATTCACCATAC 59.652 45.833 0.00 0.00 38.52 2.39
1569 1886 4.566837 ACCTCCCATCAGTATTCACCATA 58.433 43.478 0.00 0.00 0.00 2.74
1570 1887 3.397527 ACCTCCCATCAGTATTCACCAT 58.602 45.455 0.00 0.00 0.00 3.55
1571 1888 2.845659 ACCTCCCATCAGTATTCACCA 58.154 47.619 0.00 0.00 0.00 4.17
1572 1889 3.545703 CAACCTCCCATCAGTATTCACC 58.454 50.000 0.00 0.00 0.00 4.02
1573 1890 2.945668 GCAACCTCCCATCAGTATTCAC 59.054 50.000 0.00 0.00 0.00 3.18
1574 1891 2.419990 CGCAACCTCCCATCAGTATTCA 60.420 50.000 0.00 0.00 0.00 2.57
1581 1898 1.001020 AATGCGCAACCTCCCATCA 60.001 52.632 17.11 0.00 0.00 3.07
1589 1906 1.153958 GCTTGAGGAATGCGCAACC 60.154 57.895 17.11 21.21 0.00 3.77
1681 1999 1.514087 CAATGTGCAGTGCCCATCC 59.486 57.895 13.70 0.00 0.00 3.51
1711 2029 7.205737 TCGTATGCAAACTAACGAGGATATA 57.794 36.000 0.00 0.00 39.25 0.86
1739 2057 2.638480 AACAGGTCAAACAGCTAGCA 57.362 45.000 18.83 0.00 0.00 3.49
1770 2088 9.325150 CAATTAAACAGTTTATTGTACCACTCG 57.675 33.333 6.58 0.00 0.00 4.18
1890 2208 0.523072 AATGAACACGGCTGCATCAC 59.477 50.000 0.50 0.00 0.00 3.06
1912 2230 0.099968 CTGGCTGAAATGCACATCGG 59.900 55.000 5.26 5.26 34.04 4.18
1913 2231 0.806868 ACTGGCTGAAATGCACATCG 59.193 50.000 0.00 0.00 34.04 3.84
1918 2236 3.368822 GCCACTGGCTGAAATGCA 58.631 55.556 13.28 0.00 46.69 3.96
1961 2279 1.381599 TTTGGAGGGGATGCCATGC 60.382 57.895 5.30 3.39 33.46 4.06
1999 2449 8.978472 AGACACATGTTAGCCTAATTAGTAAGA 58.022 33.333 11.50 3.91 0.00 2.10
2217 2673 7.364144 GGGACTAAGGAAAGCAATTTCATTCAT 60.364 37.037 4.14 0.00 36.50 2.57
2218 2674 6.071391 GGGACTAAGGAAAGCAATTTCATTCA 60.071 38.462 4.14 0.00 36.50 2.57
2219 2675 6.071391 TGGGACTAAGGAAAGCAATTTCATTC 60.071 38.462 4.14 0.00 36.50 2.67
2220 2676 5.779771 TGGGACTAAGGAAAGCAATTTCATT 59.220 36.000 6.00 6.00 38.33 2.57
2290 2746 1.340889 TGAAATTGCACAGCAGGAACC 59.659 47.619 0.00 0.00 40.61 3.62
2325 2781 6.782494 ACAAAATTCCCTCTGTAATTCCAAGT 59.218 34.615 0.00 0.00 0.00 3.16
2621 3078 7.880160 TTCTTGCTGTAGTAATGCCAATAAT 57.120 32.000 0.00 0.00 0.00 1.28
3095 3554 4.023726 TGGTAATGACTGGGGTAACAAC 57.976 45.455 0.00 0.00 39.74 3.32
3166 3625 7.229308 ACCATACATACTCGGATACTCTTACA 58.771 38.462 0.00 0.00 0.00 2.41
3228 3687 2.039418 ACTCTCGCCCAAGCATACATA 58.961 47.619 0.00 0.00 39.83 2.29
3229 3688 0.833287 ACTCTCGCCCAAGCATACAT 59.167 50.000 0.00 0.00 39.83 2.29
3322 7669 3.696306 GCTAGAGGTGAAGCCCATC 57.304 57.895 0.00 0.00 38.26 3.51
3328 7675 1.343075 TGGGGTAGGCTAGAGGTGAAG 60.343 57.143 0.00 0.00 0.00 3.02
3357 7704 4.278310 ACAACAACAAAGCCTTTAGTCCT 58.722 39.130 0.00 0.00 0.00 3.85
3382 7729 4.431416 TGCTTCAGGTTTAGGTCAAGAA 57.569 40.909 0.00 0.00 0.00 2.52
3383 7730 4.640771 ATGCTTCAGGTTTAGGTCAAGA 57.359 40.909 0.00 0.00 0.00 3.02
3384 7731 5.617751 CGAAATGCTTCAGGTTTAGGTCAAG 60.618 44.000 0.00 0.00 0.00 3.02
3493 7840 5.749596 TCATATTCCATTACGGTTGCAAG 57.250 39.130 0.00 0.00 35.57 4.01
3715 8105 4.268884 GGATTAAGTCACTGAGTCATTCGC 59.731 45.833 0.00 0.00 0.00 4.70
4063 8453 5.532406 GCAGTAAAGAAATGATCTATGGCCA 59.468 40.000 8.56 8.56 37.42 5.36
4188 8578 5.414765 GGGACAACAAAAATACCTACCTCAG 59.585 44.000 0.00 0.00 0.00 3.35
4394 8785 5.503357 GCAAACTGTCATGAAAGTACACGAA 60.503 40.000 19.03 0.00 0.00 3.85
4759 9150 1.681793 GCGAGTGCTCTCAGGGTAATA 59.318 52.381 15.59 0.00 40.44 0.98
5727 10118 4.448210 TCCGCATTAAATAGTTCTCCACC 58.552 43.478 0.00 0.00 0.00 4.61
5740 10131 5.410132 TCTCGAAACAGAAAATCCGCATTAA 59.590 36.000 0.00 0.00 0.00 1.40
5741 10132 4.932799 TCTCGAAACAGAAAATCCGCATTA 59.067 37.500 0.00 0.00 0.00 1.90
5900 12310 2.505819 GACAGGCCTTTAAGGGATCTGA 59.494 50.000 24.06 0.00 35.37 3.27
5920 12330 2.314647 CCGGAAAAGCGCAGTTCGA 61.315 57.895 11.47 0.00 41.67 3.71
5921 12331 2.173382 CCGGAAAAGCGCAGTTCG 59.827 61.111 11.47 4.19 42.12 3.95
5928 12338 1.529010 CGTAAATCAGCCGGAAAAGCG 60.529 52.381 5.05 0.00 34.64 4.68
5935 12345 0.810031 CTGTCCCGTAAATCAGCCGG 60.810 60.000 0.00 0.00 41.37 6.13
5936 12346 1.429148 GCTGTCCCGTAAATCAGCCG 61.429 60.000 4.90 0.00 44.84 5.52
6037 12456 1.453155 GATTTGCGGCAGAGAAGGAA 58.547 50.000 1.67 0.00 0.00 3.36
6039 12458 1.379642 GGGATTTGCGGCAGAGAAGG 61.380 60.000 1.67 0.00 0.00 3.46
6070 12489 1.899437 AAGATCCGCTCAAGCCGGAA 61.899 55.000 5.05 4.54 43.14 4.30
6071 12490 2.298158 GAAGATCCGCTCAAGCCGGA 62.298 60.000 5.05 14.75 43.68 5.14
6074 12493 3.711348 CGAAGATCCGCTCAAGCC 58.289 61.111 0.00 0.00 37.91 4.35
6145 12617 2.748058 ATCGCCCAAACTCTTGCCGT 62.748 55.000 0.00 0.00 31.61 5.68
6153 12625 4.388499 ACCGCGATCGCCCAAACT 62.388 61.111 32.63 7.22 37.98 2.66
6199 12707 4.088762 CGTTCATGCGCTTGCGGT 62.089 61.111 17.84 0.00 43.34 5.68
6211 12719 2.254350 CTGCCTCGTCGTCGTTCA 59.746 61.111 1.33 0.00 38.33 3.18
6252 12760 3.133721 GCTTCCCTCTACATGTCTGACAT 59.866 47.826 17.24 17.24 39.91 3.06
6336 12847 2.184322 GAAGATGTCGCCGAGGCA 59.816 61.111 15.03 0.00 42.06 4.75
6364 12875 1.445582 GCCTCCTTACGGTGTCACG 60.446 63.158 0.00 0.00 40.31 4.35
6366 12877 2.642254 CCGCCTCCTTACGGTGTCA 61.642 63.158 0.00 0.00 44.46 3.58
6495 13008 3.194329 TGGAGAGTGTTGTAGATCAGCAG 59.806 47.826 0.00 0.00 37.90 4.24
6553 13066 2.661399 AGTCCTCGTCGGAGTCGA 59.339 61.111 0.00 0.00 46.69 4.20
6647 13162 4.394729 GGAGTTCACACCCAAAACATAGA 58.605 43.478 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.