Multiple sequence alignment - TraesCS5D01G191500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G191500 chr5D 100.000 7378 0 0 1 7378 294417676 294425053 0.000000e+00 13625.0
1 TraesCS5D01G191500 chr5B 94.249 6051 223 57 806 6755 335942174 335948200 0.000000e+00 9130.0
2 TraesCS5D01G191500 chr5B 90.427 585 16 10 6795 7378 335948198 335948743 0.000000e+00 734.0
3 TraesCS5D01G191500 chr5B 86.425 221 18 6 1 218 335941760 335941971 1.600000e-56 231.0
4 TraesCS5D01G191500 chr5B 91.463 82 5 1 678 759 335941980 335942059 2.180000e-20 111.0
5 TraesCS5D01G191500 chr5B 97.619 42 1 0 6756 6797 248393490 248393531 1.030000e-08 73.1
6 TraesCS5D01G191500 chr5A 94.331 6033 201 55 808 6758 387399274 387405247 0.000000e+00 9116.0
7 TraesCS5D01G191500 chr5A 97.611 586 11 1 6796 7378 387405246 387405831 0.000000e+00 1002.0
8 TraesCS5D01G191500 chr5A 88.767 454 48 3 224 674 616412127 616412580 3.010000e-153 553.0
9 TraesCS5D01G191500 chr5A 88.053 452 51 3 225 674 616432732 616432282 3.920000e-147 532.0
10 TraesCS5D01G191500 chr5A 86.702 188 17 6 1 188 387398386 387398565 1.260000e-47 202.0
11 TraesCS5D01G191500 chr1A 93.304 448 29 1 227 674 241080334 241079888 0.000000e+00 660.0
12 TraesCS5D01G191500 chr1A 87.445 454 49 8 225 674 346446717 346446268 3.950000e-142 516.0
13 TraesCS5D01G191500 chr4B 90.667 450 41 1 224 673 36184657 36184209 1.370000e-166 597.0
14 TraesCS5D01G191500 chr4B 90.583 446 38 4 226 670 478454913 478455355 8.250000e-164 588.0
15 TraesCS5D01G191500 chr4B 89.800 451 40 6 225 673 629375407 629374961 2.310000e-159 573.0
16 TraesCS5D01G191500 chr4B 97.619 42 1 0 6756 6797 443959805 443959846 1.030000e-08 73.1
17 TraesCS5D01G191500 chr6B 89.823 452 43 3 225 674 673367316 673366866 1.780000e-160 577.0
18 TraesCS5D01G191500 chr6B 95.652 46 1 1 6756 6800 552503882 552503927 1.030000e-08 73.1
19 TraesCS5D01G191500 chr6B 95.238 42 2 0 6756 6797 184009903 184009862 4.780000e-07 67.6
20 TraesCS5D01G191500 chr3B 87.805 451 54 1 223 673 733215911 733215462 1.820000e-145 527.0
21 TraesCS5D01G191500 chr3B 97.619 42 1 0 6756 6797 794347631 794347672 1.030000e-08 73.1
22 TraesCS5D01G191500 chr3B 97.561 41 1 0 6757 6797 557174673 557174633 3.690000e-08 71.3
23 TraesCS5D01G191500 chr2B 91.837 49 3 1 6757 6805 123085024 123084977 4.780000e-07 67.6
24 TraesCS5D01G191500 chr6D 95.122 41 2 0 6757 6797 251235089 251235129 1.720000e-06 65.8
25 TraesCS5D01G191500 chr2D 93.182 44 3 0 6757 6800 91426603 91426560 1.720000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G191500 chr5D 294417676 294425053 7377 False 13625.0 13625 100.000000 1 7378 1 chr5D.!!$F1 7377
1 TraesCS5D01G191500 chr5B 335941760 335948743 6983 False 2551.5 9130 90.641000 1 7378 4 chr5B.!!$F2 7377
2 TraesCS5D01G191500 chr5A 387398386 387405831 7445 False 3440.0 9116 92.881333 1 7378 3 chr5A.!!$F2 7377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 613 0.035458 CTCACTTCAGTCCGGGCTTT 59.965 55.000 5.38 0.0 0.00 3.51 F
665 666 0.248054 CCATGTGCGCATAAACGTCC 60.248 55.000 15.91 0.0 33.30 4.79 F
668 669 0.319986 TGTGCGCATAAACGTCCAGA 60.320 50.000 15.91 0.0 34.88 3.86 F
669 670 0.793861 GTGCGCATAAACGTCCAGAA 59.206 50.000 15.91 0.0 34.88 3.02 F
1563 1701 0.948623 TTTCATGTGGCAGACCGACG 60.949 55.000 0.00 0.0 39.70 5.12 F
1652 1790 1.000060 ACCAGCGCGTCTTTTGTACTA 60.000 47.619 8.43 0.0 0.00 1.82 F
2691 2878 0.456221 CCGTCTACCGAACTGAGCAT 59.544 55.000 0.00 0.0 39.56 3.79 F
4233 4445 2.225068 ACAGCCGATCCATTAAGTCG 57.775 50.000 0.00 0.0 35.29 4.18 F
4908 5122 0.038892 TCGCCGTGACTCTGTAAACC 60.039 55.000 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1701 0.249398 ACATGCTGGTACGAGTTCCC 59.751 55.000 6.75 0.00 0.0 3.97 R
2155 2310 0.447801 CACCGCATACTGAACAAGCC 59.552 55.000 0.00 0.00 0.0 4.35 R
2393 2548 6.017687 CACAAGTTACCTACCTAACACAAACC 60.018 42.308 0.00 0.00 0.0 3.27 R
2633 2807 8.145767 TGGTCGTATCGTTTAATGGAATAGAAT 58.854 33.333 0.00 0.00 0.0 2.40 R
2691 2878 0.606604 GGACGCTGACCCTGACTTTA 59.393 55.000 0.00 0.00 0.0 1.85 R
2757 2944 1.246056 TAAGGCTGTAGTCGCGGTGT 61.246 55.000 6.13 0.00 0.0 4.16 R
4671 4885 0.321387 TAGAGTCGTCGAGGTGCACT 60.321 55.000 17.98 2.27 0.0 4.40 R
5687 5910 0.546122 CAGTACATGCCCAGCCCTAA 59.454 55.000 0.00 0.00 0.0 2.69 R
6569 6839 0.598419 GCCAAGTGTTTTCAGCAGCC 60.598 55.000 0.00 0.00 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.593382 CGTCCCAGTAGTACTATACCAGTATC 59.407 46.154 5.75 0.00 41.77 2.24
125 126 0.813184 CTTGCGCCTTCATTGTCCAT 59.187 50.000 4.18 0.00 0.00 3.41
176 177 5.874261 TCTGACATTGCATCGTTTCTCATTA 59.126 36.000 0.00 0.00 0.00 1.90
221 222 8.324163 TCTTAGTGCTTCTCTTCCAAAATTAC 57.676 34.615 0.00 0.00 0.00 1.89
225 226 8.273780 AGTGCTTCTCTTCCAAAATTACTATG 57.726 34.615 0.00 0.00 0.00 2.23
227 228 8.515414 GTGCTTCTCTTCCAAAATTACTATGTT 58.485 33.333 0.00 0.00 0.00 2.71
228 229 9.733556 TGCTTCTCTTCCAAAATTACTATGTTA 57.266 29.630 0.00 0.00 0.00 2.41
231 232 9.681062 TTCTCTTCCAAAATTACTATGTTAGGG 57.319 33.333 0.00 0.00 0.00 3.53
234 235 7.556275 TCTTCCAAAATTACTATGTTAGGGCTG 59.444 37.037 0.00 0.00 0.00 4.85
236 237 5.594317 CCAAAATTACTATGTTAGGGCTGCT 59.406 40.000 0.00 0.00 0.00 4.24
237 238 6.460123 CCAAAATTACTATGTTAGGGCTGCTG 60.460 42.308 0.00 0.00 0.00 4.41
239 240 6.494666 AATTACTATGTTAGGGCTGCTGTA 57.505 37.500 0.00 0.00 0.00 2.74
241 242 2.700897 ACTATGTTAGGGCTGCTGTAGG 59.299 50.000 0.00 0.00 0.00 3.18
248 249 2.665000 GCTGCTGTAGGCTGGTGA 59.335 61.111 0.00 0.00 42.39 4.02
249 250 1.449246 GCTGCTGTAGGCTGGTGAG 60.449 63.158 0.00 0.00 42.39 3.51
251 252 2.124942 GCTGTAGGCTGGTGAGGC 60.125 66.667 0.00 0.00 45.31 4.70
257 258 2.749441 GGCTGGTGAGGCTTGCTC 60.749 66.667 0.00 0.00 41.64 4.26
258 259 3.123620 GCTGGTGAGGCTTGCTCG 61.124 66.667 0.00 0.00 0.00 5.03
260 261 3.241530 TGGTGAGGCTTGCTCGGT 61.242 61.111 0.00 0.00 0.00 4.69
262 263 1.600916 GGTGAGGCTTGCTCGGTTT 60.601 57.895 0.00 0.00 0.00 3.27
263 264 0.321298 GGTGAGGCTTGCTCGGTTTA 60.321 55.000 0.00 0.00 0.00 2.01
264 265 1.079503 GTGAGGCTTGCTCGGTTTAG 58.920 55.000 0.00 0.00 0.00 1.85
266 267 1.337823 TGAGGCTTGCTCGGTTTAGTC 60.338 52.381 0.00 0.00 0.00 2.59
267 268 0.977395 AGGCTTGCTCGGTTTAGTCT 59.023 50.000 0.00 0.00 0.00 3.24
268 269 1.066787 AGGCTTGCTCGGTTTAGTCTC 60.067 52.381 0.00 0.00 0.00 3.36
270 271 1.727335 GCTTGCTCGGTTTAGTCTCAC 59.273 52.381 0.00 0.00 0.00 3.51
271 272 2.610727 GCTTGCTCGGTTTAGTCTCACT 60.611 50.000 0.00 0.00 0.00 3.41
272 273 3.654414 CTTGCTCGGTTTAGTCTCACTT 58.346 45.455 0.00 0.00 0.00 3.16
274 275 2.251893 GCTCGGTTTAGTCTCACTTCG 58.748 52.381 0.00 0.00 0.00 3.79
275 276 2.251893 CTCGGTTTAGTCTCACTTCGC 58.748 52.381 0.00 0.00 0.00 4.70
276 277 1.884579 TCGGTTTAGTCTCACTTCGCT 59.115 47.619 0.00 0.00 0.00 4.93
277 278 2.295349 TCGGTTTAGTCTCACTTCGCTT 59.705 45.455 0.00 0.00 0.00 4.68
278 279 2.408704 CGGTTTAGTCTCACTTCGCTTG 59.591 50.000 0.00 0.00 0.00 4.01
280 281 1.698165 TTAGTCTCACTTCGCTTGCG 58.302 50.000 8.87 8.87 0.00 4.85
281 282 0.109272 TAGTCTCACTTCGCTTGCGG 60.109 55.000 15.10 2.56 0.00 5.69
282 283 2.048222 TCTCACTTCGCTTGCGGG 60.048 61.111 15.10 10.54 0.00 6.13
283 284 2.048222 CTCACTTCGCTTGCGGGA 60.048 61.111 15.10 7.17 0.00 5.14
285 286 3.121030 CACTTCGCTTGCGGGAGG 61.121 66.667 15.10 0.00 35.65 4.30
287 288 2.510238 CTTCGCTTGCGGGAGGAG 60.510 66.667 15.10 2.77 31.92 3.69
288 289 4.082523 TTCGCTTGCGGGAGGAGG 62.083 66.667 15.10 0.00 33.32 4.30
292 293 3.801997 CTTGCGGGAGGAGGCCAT 61.802 66.667 5.01 0.00 0.00 4.40
293 294 4.113815 TTGCGGGAGGAGGCCATG 62.114 66.667 5.01 0.00 0.00 3.66
295 296 4.554036 GCGGGAGGAGGCCATGAC 62.554 72.222 5.01 0.00 0.00 3.06
296 297 3.866582 CGGGAGGAGGCCATGACC 61.867 72.222 5.01 2.67 0.00 4.02
297 298 2.692368 GGGAGGAGGCCATGACCA 60.692 66.667 5.01 0.00 0.00 4.02
298 299 2.750657 GGGAGGAGGCCATGACCAG 61.751 68.421 5.01 0.00 0.00 4.00
299 300 2.191641 GAGGAGGCCATGACCAGC 59.808 66.667 5.01 0.00 0.00 4.85
300 301 2.285969 AGGAGGCCATGACCAGCT 60.286 61.111 5.01 0.00 0.00 4.24
302 303 0.621571 AGGAGGCCATGACCAGCTTA 60.622 55.000 5.01 0.00 0.00 3.09
304 305 1.699634 GGAGGCCATGACCAGCTTATA 59.300 52.381 5.01 0.00 0.00 0.98
306 307 3.406764 GAGGCCATGACCAGCTTATAAG 58.593 50.000 5.01 8.20 0.00 1.73
307 308 2.107204 AGGCCATGACCAGCTTATAAGG 59.893 50.000 14.28 1.26 0.00 2.69
309 310 2.106511 GCCATGACCAGCTTATAAGGGA 59.893 50.000 14.28 0.00 0.00 4.20
311 312 3.648067 CCATGACCAGCTTATAAGGGAGA 59.352 47.826 14.28 1.46 0.00 3.71
312 313 4.262808 CCATGACCAGCTTATAAGGGAGAG 60.263 50.000 14.28 2.36 0.00 3.20
313 314 4.265856 TGACCAGCTTATAAGGGAGAGA 57.734 45.455 14.28 0.00 0.00 3.10
314 315 4.820775 TGACCAGCTTATAAGGGAGAGAT 58.179 43.478 14.28 0.00 0.00 2.75
316 317 5.305644 TGACCAGCTTATAAGGGAGAGATTC 59.694 44.000 14.28 1.89 0.00 2.52
318 319 4.843516 CCAGCTTATAAGGGAGAGATTCCT 59.156 45.833 14.28 0.00 45.98 3.36
319 320 5.309282 CCAGCTTATAAGGGAGAGATTCCTT 59.691 44.000 14.28 0.00 45.98 3.36
320 321 6.463360 CAGCTTATAAGGGAGAGATTCCTTC 58.537 44.000 14.28 0.00 45.98 3.46
322 323 5.546110 GCTTATAAGGGAGAGATTCCTTCCT 59.454 44.000 14.28 0.00 45.98 3.36
323 324 6.295632 GCTTATAAGGGAGAGATTCCTTCCTC 60.296 46.154 14.28 0.00 45.98 3.71
324 325 3.498614 AAGGGAGAGATTCCTTCCTCA 57.501 47.619 3.30 0.00 45.98 3.86
325 326 2.758130 AGGGAGAGATTCCTTCCTCAC 58.242 52.381 0.00 0.00 45.98 3.51
327 328 3.111484 GGGAGAGATTCCTTCCTCACTT 58.889 50.000 0.00 0.00 45.98 3.16
329 330 3.772025 GGAGAGATTCCTTCCTCACTTCA 59.228 47.826 0.00 0.00 43.16 3.02
330 331 4.141959 GGAGAGATTCCTTCCTCACTTCAG 60.142 50.000 0.00 0.00 43.16 3.02
331 332 4.424842 AGAGATTCCTTCCTCACTTCAGT 58.575 43.478 0.00 0.00 32.07 3.41
332 333 4.466015 AGAGATTCCTTCCTCACTTCAGTC 59.534 45.833 0.00 0.00 32.07 3.51
333 334 3.517500 AGATTCCTTCCTCACTTCAGTCC 59.482 47.826 0.00 0.00 0.00 3.85
334 335 1.257743 TCCTTCCTCACTTCAGTCCG 58.742 55.000 0.00 0.00 0.00 4.79
335 336 0.247736 CCTTCCTCACTTCAGTCCGG 59.752 60.000 0.00 0.00 0.00 5.14
337 338 1.827399 TTCCTCACTTCAGTCCGGGC 61.827 60.000 0.00 0.00 0.00 6.13
338 339 2.286523 CCTCACTTCAGTCCGGGCT 61.287 63.158 0.35 0.35 0.00 5.19
339 340 1.674057 CTCACTTCAGTCCGGGCTT 59.326 57.895 5.38 0.00 0.00 4.35
341 342 0.472471 TCACTTCAGTCCGGGCTTTT 59.528 50.000 5.38 0.00 0.00 2.27
342 343 0.593128 CACTTCAGTCCGGGCTTTTG 59.407 55.000 5.38 0.83 0.00 2.44
343 344 0.537371 ACTTCAGTCCGGGCTTTTGG 60.537 55.000 5.38 0.00 0.00 3.28
344 345 1.228429 TTCAGTCCGGGCTTTTGGG 60.228 57.895 5.38 0.00 0.00 4.12
345 346 1.710996 TTCAGTCCGGGCTTTTGGGA 61.711 55.000 5.38 0.00 0.00 4.37
346 347 1.000896 CAGTCCGGGCTTTTGGGAT 60.001 57.895 5.38 0.00 31.43 3.85
347 348 1.000896 AGTCCGGGCTTTTGGGATG 60.001 57.895 0.35 0.00 31.43 3.51
348 349 2.052104 GTCCGGGCTTTTGGGATGG 61.052 63.158 0.00 0.00 31.43 3.51
349 350 2.235028 TCCGGGCTTTTGGGATGGA 61.235 57.895 0.00 0.00 0.00 3.41
350 351 1.754234 CCGGGCTTTTGGGATGGAG 60.754 63.158 0.00 0.00 0.00 3.86
351 352 1.000896 CGGGCTTTTGGGATGGAGT 60.001 57.895 0.00 0.00 0.00 3.85
352 353 1.315257 CGGGCTTTTGGGATGGAGTG 61.315 60.000 0.00 0.00 0.00 3.51
353 354 0.972471 GGGCTTTTGGGATGGAGTGG 60.972 60.000 0.00 0.00 0.00 4.00
355 356 1.607801 GCTTTTGGGATGGAGTGGGC 61.608 60.000 0.00 0.00 0.00 5.36
356 357 0.040204 CTTTTGGGATGGAGTGGGCT 59.960 55.000 0.00 0.00 0.00 5.19
357 358 0.039618 TTTTGGGATGGAGTGGGCTC 59.960 55.000 0.00 0.00 40.93 4.70
358 359 0.846427 TTTGGGATGGAGTGGGCTCT 60.846 55.000 0.00 0.00 41.38 4.09
359 360 1.274703 TTGGGATGGAGTGGGCTCTC 61.275 60.000 0.00 2.59 41.38 3.20
360 361 1.383803 GGGATGGAGTGGGCTCTCT 60.384 63.158 9.27 0.00 41.38 3.10
361 362 1.694133 GGGATGGAGTGGGCTCTCTG 61.694 65.000 0.00 0.00 41.38 3.35
362 363 1.145819 GATGGAGTGGGCTCTCTGC 59.854 63.158 0.00 0.00 41.38 4.26
363 364 1.306825 ATGGAGTGGGCTCTCTGCT 60.307 57.895 8.69 0.00 41.38 4.24
364 365 1.624479 ATGGAGTGGGCTCTCTGCTG 61.624 60.000 8.69 0.00 41.38 4.41
365 366 1.986757 GGAGTGGGCTCTCTGCTGA 60.987 63.158 0.00 0.00 41.38 4.26
367 368 0.540923 GAGTGGGCTCTCTGCTGAAT 59.459 55.000 0.00 0.00 42.39 2.57
368 369 0.252479 AGTGGGCTCTCTGCTGAATG 59.748 55.000 0.00 0.00 42.39 2.67
370 371 0.694771 TGGGCTCTCTGCTGAATGTT 59.305 50.000 0.00 0.00 42.39 2.71
371 372 1.093159 GGGCTCTCTGCTGAATGTTG 58.907 55.000 0.00 0.00 42.39 3.33
373 374 1.467734 GGCTCTCTGCTGAATGTTGTG 59.532 52.381 0.00 0.00 42.39 3.33
374 375 1.135746 GCTCTCTGCTGAATGTTGTGC 60.136 52.381 0.00 0.00 38.95 4.57
375 376 1.467734 CTCTCTGCTGAATGTTGTGCC 59.532 52.381 0.00 0.00 0.00 5.01
376 377 1.202794 TCTCTGCTGAATGTTGTGCCA 60.203 47.619 0.00 0.00 0.00 4.92
377 378 1.816835 CTCTGCTGAATGTTGTGCCAT 59.183 47.619 0.00 0.00 0.00 4.40
378 379 1.542472 TCTGCTGAATGTTGTGCCATG 59.458 47.619 0.00 0.00 0.00 3.66
380 381 1.000052 TGCTGAATGTTGTGCCATGTG 60.000 47.619 0.00 0.00 0.00 3.21
381 382 1.705256 CTGAATGTTGTGCCATGTGC 58.295 50.000 0.00 0.00 41.77 4.57
390 391 1.136356 TGCCATGTGCGCATAAACG 59.864 52.632 15.91 3.80 45.60 3.60
391 392 1.136565 GCCATGTGCGCATAAACGT 59.863 52.632 15.91 0.00 33.30 3.99
392 393 0.861450 GCCATGTGCGCATAAACGTC 60.861 55.000 15.91 0.00 33.30 4.34
393 394 0.248054 CCATGTGCGCATAAACGTCC 60.248 55.000 15.91 0.00 33.30 4.79
394 395 0.445829 CATGTGCGCATAAACGTCCA 59.554 50.000 15.91 4.05 33.30 4.02
395 396 0.726827 ATGTGCGCATAAACGTCCAG 59.273 50.000 15.91 0.00 32.73 3.86
396 397 0.319986 TGTGCGCATAAACGTCCAGA 60.320 50.000 15.91 0.00 34.88 3.86
397 398 0.793861 GTGCGCATAAACGTCCAGAA 59.206 50.000 15.91 0.00 34.88 3.02
398 399 1.396996 GTGCGCATAAACGTCCAGAAT 59.603 47.619 15.91 0.00 34.88 2.40
399 400 1.396648 TGCGCATAAACGTCCAGAATG 59.603 47.619 5.66 0.00 34.88 2.67
400 401 1.396996 GCGCATAAACGTCCAGAATGT 59.603 47.619 0.30 0.00 34.88 2.71
402 403 3.062909 GCGCATAAACGTCCAGAATGTAA 59.937 43.478 0.30 0.00 34.88 2.41
403 404 4.782195 GCGCATAAACGTCCAGAATGTAAG 60.782 45.833 0.30 0.00 34.88 2.34
407 408 6.755141 GCATAAACGTCCAGAATGTAAGTAGA 59.245 38.462 0.00 0.00 0.00 2.59
408 409 7.043325 GCATAAACGTCCAGAATGTAAGTAGAG 60.043 40.741 0.00 0.00 0.00 2.43
409 410 5.979288 AACGTCCAGAATGTAAGTAGAGT 57.021 39.130 0.00 0.00 0.00 3.24
410 411 5.312120 ACGTCCAGAATGTAAGTAGAGTG 57.688 43.478 0.00 0.00 0.00 3.51
411 412 4.765856 ACGTCCAGAATGTAAGTAGAGTGT 59.234 41.667 0.00 0.00 0.00 3.55
412 413 5.096169 CGTCCAGAATGTAAGTAGAGTGTG 58.904 45.833 0.00 0.00 0.00 3.82
413 414 5.411781 GTCCAGAATGTAAGTAGAGTGTGG 58.588 45.833 0.00 0.00 30.80 4.17
414 415 4.466370 TCCAGAATGTAAGTAGAGTGTGGG 59.534 45.833 0.32 0.00 30.59 4.61
416 417 4.081420 CAGAATGTAAGTAGAGTGTGGGCT 60.081 45.833 0.00 0.00 0.00 5.19
417 418 5.127194 CAGAATGTAAGTAGAGTGTGGGCTA 59.873 44.000 0.00 0.00 0.00 3.93
418 419 5.361285 AGAATGTAAGTAGAGTGTGGGCTAG 59.639 44.000 0.00 0.00 0.00 3.42
421 422 4.888239 TGTAAGTAGAGTGTGGGCTAGATC 59.112 45.833 0.00 0.00 0.00 2.75
422 423 3.671740 AGTAGAGTGTGGGCTAGATCA 57.328 47.619 0.00 0.00 0.00 2.92
423 424 3.982516 AGTAGAGTGTGGGCTAGATCAA 58.017 45.455 0.00 0.00 0.00 2.57
424 425 3.957497 AGTAGAGTGTGGGCTAGATCAAG 59.043 47.826 0.00 0.00 0.00 3.02
425 426 2.826488 AGAGTGTGGGCTAGATCAAGT 58.174 47.619 0.00 0.00 0.00 3.16
426 427 3.177228 AGAGTGTGGGCTAGATCAAGTT 58.823 45.455 0.00 0.00 0.00 2.66
427 428 3.055530 AGAGTGTGGGCTAGATCAAGTTG 60.056 47.826 0.00 0.00 0.00 3.16
428 429 2.026822 AGTGTGGGCTAGATCAAGTTGG 60.027 50.000 2.34 0.00 0.00 3.77
429 430 2.027192 GTGTGGGCTAGATCAAGTTGGA 60.027 50.000 2.34 0.00 0.00 3.53
430 431 2.027192 TGTGGGCTAGATCAAGTTGGAC 60.027 50.000 2.34 0.00 0.00 4.02
432 433 1.291132 GGCTAGATCAAGTTGGACGC 58.709 55.000 2.34 0.00 0.00 5.19
433 434 1.134670 GGCTAGATCAAGTTGGACGCT 60.135 52.381 2.34 0.00 0.00 5.07
434 435 2.100916 GGCTAGATCAAGTTGGACGCTA 59.899 50.000 2.34 0.00 0.00 4.26
435 436 3.430374 GGCTAGATCAAGTTGGACGCTAA 60.430 47.826 2.34 0.00 0.00 3.09
439 440 4.184629 AGATCAAGTTGGACGCTAACATC 58.815 43.478 2.34 0.00 0.00 3.06
440 441 3.678056 TCAAGTTGGACGCTAACATCT 57.322 42.857 2.34 0.00 0.00 2.90
441 442 3.325870 TCAAGTTGGACGCTAACATCTG 58.674 45.455 2.34 3.94 0.00 2.90
442 443 2.386661 AGTTGGACGCTAACATCTGG 57.613 50.000 8.31 0.00 0.00 3.86
443 444 1.623811 AGTTGGACGCTAACATCTGGT 59.376 47.619 8.31 0.00 0.00 4.00
444 445 2.829720 AGTTGGACGCTAACATCTGGTA 59.170 45.455 8.31 0.00 0.00 3.25
445 446 3.451178 AGTTGGACGCTAACATCTGGTAT 59.549 43.478 8.31 0.00 0.00 2.73
446 447 3.728076 TGGACGCTAACATCTGGTATC 57.272 47.619 0.00 0.00 0.00 2.24
447 448 3.028130 TGGACGCTAACATCTGGTATCA 58.972 45.455 0.00 0.00 0.00 2.15
458 459 2.166821 CTGGTATCAGAGCCAGCATC 57.833 55.000 0.00 0.00 44.65 3.91
459 460 0.390492 TGGTATCAGAGCCAGCATCG 59.610 55.000 0.00 0.00 0.00 3.84
461 462 0.948141 GTATCAGAGCCAGCATCGCC 60.948 60.000 0.00 0.00 0.00 5.54
464 465 2.203167 AGAGCCAGCATCGCCATG 60.203 61.111 0.00 0.00 0.00 3.66
472 473 3.428797 CATCGCCATGCCTTCCTG 58.571 61.111 0.00 0.00 0.00 3.86
474 475 1.147824 ATCGCCATGCCTTCCTGAG 59.852 57.895 0.00 0.00 0.00 3.35
476 477 2.123982 GCCATGCCTTCCTGAGGG 60.124 66.667 0.00 0.00 46.40 4.30
477 478 2.599597 CCATGCCTTCCTGAGGGG 59.400 66.667 0.00 0.00 46.40 4.79
478 479 2.123982 CATGCCTTCCTGAGGGGC 60.124 66.667 11.37 11.37 46.40 5.80
479 480 2.286732 ATGCCTTCCTGAGGGGCT 60.287 61.111 17.83 3.33 46.40 5.19
480 481 1.932757 ATGCCTTCCTGAGGGGCTT 60.933 57.895 17.83 10.17 46.40 4.35
481 482 1.931007 ATGCCTTCCTGAGGGGCTTC 61.931 60.000 17.83 0.00 46.40 3.86
482 483 2.304831 GCCTTCCTGAGGGGCTTCT 61.305 63.158 11.05 0.00 46.40 2.85
483 484 1.911471 CCTTCCTGAGGGGCTTCTC 59.089 63.158 0.00 2.32 42.26 2.87
485 486 0.987294 CTTCCTGAGGGGCTTCTCAA 59.013 55.000 0.00 0.00 42.46 3.02
486 487 0.987294 TTCCTGAGGGGCTTCTCAAG 59.013 55.000 0.00 6.61 42.46 3.02
487 488 0.911525 TCCTGAGGGGCTTCTCAAGG 60.912 60.000 0.00 12.85 42.46 3.61
488 489 1.606531 CTGAGGGGCTTCTCAAGGG 59.393 63.158 11.03 0.00 42.46 3.95
489 490 1.919600 CTGAGGGGCTTCTCAAGGGG 61.920 65.000 11.03 0.00 42.46 4.79
491 492 0.990818 GAGGGGCTTCTCAAGGGGAT 60.991 60.000 4.09 0.00 34.13 3.85
492 493 1.228510 GGGGCTTCTCAAGGGGATG 59.771 63.158 0.00 0.00 0.00 3.51
493 494 1.228510 GGGCTTCTCAAGGGGATGG 59.771 63.158 0.00 0.00 0.00 3.51
494 495 1.228510 GGCTTCTCAAGGGGATGGG 59.771 63.158 0.00 0.00 0.00 4.00
495 496 1.281925 GGCTTCTCAAGGGGATGGGA 61.282 60.000 0.00 0.00 0.00 4.37
496 497 0.849417 GCTTCTCAAGGGGATGGGAT 59.151 55.000 0.00 0.00 27.84 3.85
499 500 1.985622 TCTCAAGGGGATGGGATGTT 58.014 50.000 0.00 0.00 0.00 2.71
501 502 3.048600 TCTCAAGGGGATGGGATGTTAG 58.951 50.000 0.00 0.00 0.00 2.34
502 503 2.107204 CTCAAGGGGATGGGATGTTAGG 59.893 54.545 0.00 0.00 0.00 2.69
503 504 1.145738 CAAGGGGATGGGATGTTAGGG 59.854 57.143 0.00 0.00 0.00 3.53
504 505 1.068352 AGGGGATGGGATGTTAGGGC 61.068 60.000 0.00 0.00 0.00 5.19
505 506 1.068352 GGGGATGGGATGTTAGGGCT 61.068 60.000 0.00 0.00 0.00 5.19
506 507 0.111253 GGGATGGGATGTTAGGGCTG 59.889 60.000 0.00 0.00 0.00 4.85
507 508 0.538287 GGATGGGATGTTAGGGCTGC 60.538 60.000 0.00 0.00 0.00 5.25
508 509 0.475906 GATGGGATGTTAGGGCTGCT 59.524 55.000 0.00 0.00 0.00 4.24
509 510 0.184451 ATGGGATGTTAGGGCTGCTG 59.816 55.000 0.00 0.00 0.00 4.41
510 511 1.207488 TGGGATGTTAGGGCTGCTGT 61.207 55.000 0.00 0.00 0.00 4.40
511 512 0.837272 GGGATGTTAGGGCTGCTGTA 59.163 55.000 0.00 0.00 0.00 2.74
512 513 1.202698 GGGATGTTAGGGCTGCTGTAG 60.203 57.143 0.00 0.00 0.00 2.74
513 514 1.202698 GGATGTTAGGGCTGCTGTAGG 60.203 57.143 0.00 0.00 0.00 3.18
521 522 2.185350 CTGCTGTAGGCCGGTGAG 59.815 66.667 1.90 0.00 40.92 3.51
522 523 3.376935 CTGCTGTAGGCCGGTGAGG 62.377 68.421 1.90 0.00 44.97 3.86
533 534 4.021925 GGTGAGGCTGGCTCGGTT 62.022 66.667 23.82 0.00 0.00 4.44
536 537 0.741221 GTGAGGCTGGCTCGGTTTAG 60.741 60.000 23.82 0.00 0.00 1.85
537 538 1.192146 TGAGGCTGGCTCGGTTTAGT 61.192 55.000 23.82 0.00 0.00 2.24
538 539 0.460459 GAGGCTGGCTCGGTTTAGTC 60.460 60.000 15.80 0.00 0.00 2.59
539 540 1.449778 GGCTGGCTCGGTTTAGTCC 60.450 63.158 0.00 0.00 0.00 3.85
540 541 1.449778 GCTGGCTCGGTTTAGTCCC 60.450 63.158 0.00 0.00 0.00 4.46
541 542 1.980052 CTGGCTCGGTTTAGTCCCA 59.020 57.895 0.00 0.00 0.00 4.37
543 544 1.078637 GGCTCGGTTTAGTCCCACC 60.079 63.158 0.00 0.00 0.00 4.61
544 545 1.551019 GGCTCGGTTTAGTCCCACCT 61.551 60.000 0.00 0.00 0.00 4.00
546 547 1.263356 CTCGGTTTAGTCCCACCTCA 58.737 55.000 0.00 0.00 0.00 3.86
547 548 0.971386 TCGGTTTAGTCCCACCTCAC 59.029 55.000 0.00 0.00 0.00 3.51
548 549 0.974383 CGGTTTAGTCCCACCTCACT 59.026 55.000 0.00 0.00 0.00 3.41
549 550 1.346722 CGGTTTAGTCCCACCTCACTT 59.653 52.381 0.00 0.00 0.00 3.16
550 551 2.779506 GGTTTAGTCCCACCTCACTTG 58.220 52.381 0.00 0.00 0.00 3.16
551 552 2.152016 GTTTAGTCCCACCTCACTTGC 58.848 52.381 0.00 0.00 0.00 4.01
553 554 0.976641 TAGTCCCACCTCACTTGCAG 59.023 55.000 0.00 0.00 0.00 4.41
554 555 1.302832 GTCCCACCTCACTTGCAGG 60.303 63.158 0.00 0.00 37.03 4.85
556 557 1.002868 CCCACCTCACTTGCAGGAG 60.003 63.158 1.40 3.94 34.75 3.69
561 562 1.078567 CTCACTTGCAGGAGGAGGC 60.079 63.158 1.40 0.00 0.00 4.70
562 563 2.045536 CACTTGCAGGAGGAGGCC 60.046 66.667 1.40 0.00 0.00 5.19
563 564 2.530151 ACTTGCAGGAGGAGGCCA 60.530 61.111 5.01 0.00 0.00 5.36
564 565 1.927527 ACTTGCAGGAGGAGGCCAT 60.928 57.895 5.01 0.00 0.00 4.40
565 566 1.453379 CTTGCAGGAGGAGGCCATG 60.453 63.158 5.01 0.00 0.00 3.66
567 568 2.191641 GCAGGAGGAGGCCATGAC 59.808 66.667 5.01 0.00 0.00 3.06
568 569 2.914289 CAGGAGGAGGCCATGACC 59.086 66.667 5.01 2.89 0.00 4.02
569 570 1.997311 CAGGAGGAGGCCATGACCA 60.997 63.158 5.01 0.00 0.00 4.02
570 571 1.692042 AGGAGGAGGCCATGACCAG 60.692 63.158 5.01 0.00 0.00 4.00
571 572 2.191641 GAGGAGGCCATGACCAGC 59.808 66.667 5.01 0.00 0.00 4.85
572 573 2.285969 AGGAGGCCATGACCAGCT 60.286 61.111 5.01 0.00 0.00 4.24
574 575 0.621571 AGGAGGCCATGACCAGCTTA 60.622 55.000 5.01 0.00 0.00 3.09
575 576 0.475906 GGAGGCCATGACCAGCTTAT 59.524 55.000 5.01 0.00 0.00 1.73
576 577 1.699634 GGAGGCCATGACCAGCTTATA 59.300 52.381 5.01 0.00 0.00 0.98
578 579 3.406764 GAGGCCATGACCAGCTTATAAG 58.593 50.000 5.01 8.20 0.00 1.73
579 580 2.107204 AGGCCATGACCAGCTTATAAGG 59.893 50.000 14.28 1.26 0.00 2.69
582 583 3.808618 GCCATGACCAGCTTATAAGGGAG 60.809 52.174 14.28 2.36 0.00 4.30
584 585 4.103153 CCATGACCAGCTTATAAGGGAGAA 59.897 45.833 14.28 0.88 0.00 2.87
585 586 5.397899 CCATGACCAGCTTATAAGGGAGAAA 60.398 44.000 14.28 0.00 0.00 2.52
589 590 6.828785 TGACCAGCTTATAAGGGAGAAATTTC 59.171 38.462 14.28 10.33 0.00 2.17
590 591 6.974795 ACCAGCTTATAAGGGAGAAATTTCT 58.025 36.000 20.60 20.60 41.00 2.52
591 592 7.414266 ACCAGCTTATAAGGGAGAAATTTCTT 58.586 34.615 21.33 8.58 37.73 2.52
592 593 7.558081 ACCAGCTTATAAGGGAGAAATTTCTTC 59.442 37.037 21.33 19.15 37.73 2.87
602 603 6.493449 GGAGAAATTTCTTCCTCACTTCAG 57.507 41.667 21.33 0.00 37.73 3.02
605 606 6.000840 AGAAATTTCTTCCTCACTTCAGTCC 58.999 40.000 15.11 0.00 32.55 3.85
606 607 3.386768 TTTCTTCCTCACTTCAGTCCG 57.613 47.619 0.00 0.00 0.00 4.79
607 608 1.257743 TCTTCCTCACTTCAGTCCGG 58.742 55.000 0.00 0.00 0.00 5.14
608 609 0.247736 CTTCCTCACTTCAGTCCGGG 59.752 60.000 0.00 0.00 0.00 5.73
609 610 1.827399 TTCCTCACTTCAGTCCGGGC 61.827 60.000 0.00 0.00 0.00 6.13
611 612 1.674057 CTCACTTCAGTCCGGGCTT 59.326 57.895 5.38 0.00 0.00 4.35
612 613 0.035458 CTCACTTCAGTCCGGGCTTT 59.965 55.000 5.38 0.00 0.00 3.51
613 614 0.472471 TCACTTCAGTCCGGGCTTTT 59.528 50.000 5.38 0.00 0.00 2.27
614 615 0.593128 CACTTCAGTCCGGGCTTTTG 59.407 55.000 5.38 0.83 0.00 2.44
616 617 1.228429 TTCAGTCCGGGCTTTTGGG 60.228 57.895 5.38 0.00 0.00 4.12
619 620 1.000896 AGTCCGGGCTTTTGGGATG 60.001 57.895 0.35 0.00 31.43 3.51
620 621 2.052104 GTCCGGGCTTTTGGGATGG 61.052 63.158 0.00 0.00 31.43 3.51
621 622 2.235028 TCCGGGCTTTTGGGATGGA 61.235 57.895 0.00 0.00 0.00 3.41
622 623 1.304879 CCGGGCTTTTGGGATGGAA 60.305 57.895 0.00 0.00 0.00 3.53
623 624 0.687427 CCGGGCTTTTGGGATGGAAT 60.687 55.000 0.00 0.00 0.00 3.01
624 625 0.461135 CGGGCTTTTGGGATGGAATG 59.539 55.000 0.00 0.00 0.00 2.67
625 626 0.832626 GGGCTTTTGGGATGGAATGG 59.167 55.000 0.00 0.00 0.00 3.16
626 627 1.622173 GGGCTTTTGGGATGGAATGGA 60.622 52.381 0.00 0.00 0.00 3.41
627 628 1.482182 GGCTTTTGGGATGGAATGGAC 59.518 52.381 0.00 0.00 0.00 4.02
629 630 2.428530 GCTTTTGGGATGGAATGGACTC 59.571 50.000 0.00 0.00 0.00 3.36
632 633 2.575921 TGGGATGGAATGGACTCTCT 57.424 50.000 0.00 0.00 0.00 3.10
633 634 2.121948 TGGGATGGAATGGACTCTCTG 58.878 52.381 0.00 0.00 0.00 3.35
634 635 1.202746 GGGATGGAATGGACTCTCTGC 60.203 57.143 0.00 0.00 0.00 4.26
636 637 2.485124 GGATGGAATGGACTCTCTGCTG 60.485 54.545 0.00 0.00 0.00 4.41
639 640 2.842496 TGGAATGGACTCTCTGCTGAAT 59.158 45.455 0.00 0.00 0.00 2.57
641 642 3.370315 GGAATGGACTCTCTGCTGAATGT 60.370 47.826 0.00 0.00 0.00 2.71
644 645 2.762887 TGGACTCTCTGCTGAATGTAGG 59.237 50.000 0.00 0.00 0.00 3.18
645 646 2.102252 GGACTCTCTGCTGAATGTAGGG 59.898 54.545 0.00 0.00 0.00 3.53
646 647 1.484240 ACTCTCTGCTGAATGTAGGGC 59.516 52.381 0.00 0.00 0.00 5.19
647 648 0.833287 TCTCTGCTGAATGTAGGGCC 59.167 55.000 0.00 0.00 0.00 5.80
648 649 0.543277 CTCTGCTGAATGTAGGGCCA 59.457 55.000 6.18 0.00 0.00 5.36
650 651 1.134007 TCTGCTGAATGTAGGGCCATG 60.134 52.381 6.18 0.00 0.00 3.66
652 653 1.027357 GCTGAATGTAGGGCCATGTG 58.973 55.000 6.18 0.00 0.00 3.21
654 655 0.747644 TGAATGTAGGGCCATGTGCG 60.748 55.000 6.18 0.00 42.61 5.34
661 662 4.400410 GGCCATGTGCGCATAAAC 57.600 55.556 15.91 4.48 42.61 2.01
662 663 1.586042 GGCCATGTGCGCATAAACG 60.586 57.895 15.91 3.80 42.61 3.60
664 665 0.861450 GCCATGTGCGCATAAACGTC 60.861 55.000 15.91 0.00 33.30 4.34
665 666 0.248054 CCATGTGCGCATAAACGTCC 60.248 55.000 15.91 0.00 33.30 4.79
666 667 0.445829 CATGTGCGCATAAACGTCCA 59.554 50.000 15.91 4.05 33.30 4.02
667 668 0.726827 ATGTGCGCATAAACGTCCAG 59.273 50.000 15.91 0.00 32.73 3.86
668 669 0.319986 TGTGCGCATAAACGTCCAGA 60.320 50.000 15.91 0.00 34.88 3.86
669 670 0.793861 GTGCGCATAAACGTCCAGAA 59.206 50.000 15.91 0.00 34.88 3.02
670 671 1.396996 GTGCGCATAAACGTCCAGAAT 59.603 47.619 15.91 0.00 34.88 2.40
671 672 1.396648 TGCGCATAAACGTCCAGAATG 59.603 47.619 5.66 0.00 34.88 2.67
673 674 2.605818 GCGCATAAACGTCCAGAATGTA 59.394 45.455 0.30 0.00 34.88 2.29
674 675 3.543460 GCGCATAAACGTCCAGAATGTAC 60.543 47.826 0.30 0.00 34.88 2.90
675 676 3.863424 CGCATAAACGTCCAGAATGTACT 59.137 43.478 0.00 0.00 0.00 2.73
712 749 1.072331 TCACAGGCCAAGTTCTCCTTC 59.928 52.381 5.01 0.00 0.00 3.46
721 758 2.735134 CAAGTTCTCCTTCGTTTACCCG 59.265 50.000 0.00 0.00 0.00 5.28
724 761 1.186917 TCTCCTTCGTTTACCCGGCA 61.187 55.000 0.00 0.00 0.00 5.69
773 900 9.817365 CGTCTGTGATCCATATTCATTTTTATC 57.183 33.333 0.00 0.00 0.00 1.75
798 925 9.749340 TCCATATCTACGATAAGTAATTCCAGA 57.251 33.333 0.00 0.00 34.45 3.86
878 1007 6.118170 CAGGTTTCCTACATGTGAATCTCAT 58.882 40.000 9.11 0.00 33.95 2.90
881 1010 7.671398 AGGTTTCCTACATGTGAATCTCATTTT 59.329 33.333 9.11 0.00 28.47 1.82
887 1016 9.994432 CCTACATGTGAATCTCATTTTAAAGTC 57.006 33.333 9.11 0.00 0.00 3.01
913 1042 1.647283 GCCGCTTCGTAATTTCGCG 60.647 57.895 0.00 0.00 43.08 5.87
943 1072 2.757868 GTGGGTATATTGCAAACTGCCA 59.242 45.455 16.73 7.17 44.23 4.92
949 1078 3.661597 TATTGCAAACTGCCACGCTGC 62.662 52.381 1.71 0.00 44.23 5.25
950 1079 4.268939 GCAAACTGCCACGCTGCA 62.269 61.111 0.00 0.00 37.42 4.41
952 1081 3.595758 AAACTGCCACGCTGCACC 61.596 61.111 0.00 0.00 36.04 5.01
953 1082 4.569180 AACTGCCACGCTGCACCT 62.569 61.111 0.00 0.00 36.04 4.00
1110 1240 1.004277 CCTCCTTTCCCAATCCGAACA 59.996 52.381 0.00 0.00 0.00 3.18
1277 1407 3.956199 TCAATTCCATGATTTCTCAGGCC 59.044 43.478 0.00 0.00 34.12 5.19
1371 1503 2.310538 CAGGAAGTTGCCTTTCTTGGT 58.689 47.619 0.00 0.00 34.03 3.67
1376 1508 2.466846 AGTTGCCTTTCTTGGTTTGGT 58.533 42.857 0.00 0.00 0.00 3.67
1409 1541 4.247380 GGGAGGAGGATGCGGCAG 62.247 72.222 9.25 0.00 0.00 4.85
1563 1701 0.948623 TTTCATGTGGCAGACCGACG 60.949 55.000 0.00 0.00 39.70 5.12
1647 1785 2.032377 TCTTTAACCAGCGCGTCTTTTG 60.032 45.455 8.43 0.00 0.00 2.44
1652 1790 1.000060 ACCAGCGCGTCTTTTGTACTA 60.000 47.619 8.43 0.00 0.00 1.82
1653 1791 1.389106 CCAGCGCGTCTTTTGTACTAC 59.611 52.381 8.43 0.00 0.00 2.73
1756 1899 3.578688 GAATTCAGTTTGACCCATGCAC 58.421 45.455 0.00 0.00 0.00 4.57
1897 2052 1.478105 GGTGGATTTTCTGGATGTGGC 59.522 52.381 0.00 0.00 0.00 5.01
1950 2105 1.492720 GGTCGCTGATCGGATTCTTC 58.507 55.000 5.48 0.00 39.05 2.87
1968 2123 2.746277 GGCGCGTCATTTGGGAGT 60.746 61.111 5.47 0.00 0.00 3.85
2010 2165 2.639065 GGGATCTTTGTGCCGATGTTA 58.361 47.619 0.00 0.00 0.00 2.41
2019 2174 6.372937 TCTTTGTGCCGATGTTAACATTGATA 59.627 34.615 29.84 18.22 39.56 2.15
2022 2177 7.094508 TGTGCCGATGTTAACATTGATAATT 57.905 32.000 29.84 5.66 39.56 1.40
2070 2225 3.555795 CCATATCCAAGTGTGAGGATCCG 60.556 52.174 5.98 0.00 43.39 4.18
2155 2310 3.129988 GTCCCCAAGCATTCATTTCTCAG 59.870 47.826 0.00 0.00 0.00 3.35
2393 2548 4.798387 GGGCAATTAACGCTATTCTGTTTG 59.202 41.667 0.00 0.00 0.00 2.93
2474 2629 1.480545 ACGCCTTTTTGCCTTTGTCTT 59.519 42.857 0.00 0.00 0.00 3.01
2486 2641 3.565902 GCCTTTGTCTTGCTCACTTACTT 59.434 43.478 0.00 0.00 0.00 2.24
2621 2795 4.841246 TGCATTAGGGTTTAAATGGGTGTT 59.159 37.500 0.00 0.00 34.37 3.32
2622 2796 5.308237 TGCATTAGGGTTTAAATGGGTGTTT 59.692 36.000 0.00 0.00 34.37 2.83
2623 2797 6.183361 TGCATTAGGGTTTAAATGGGTGTTTT 60.183 34.615 0.00 0.00 34.37 2.43
2624 2798 7.016268 TGCATTAGGGTTTAAATGGGTGTTTTA 59.984 33.333 0.00 0.00 34.37 1.52
2625 2799 8.044309 GCATTAGGGTTTAAATGGGTGTTTTAT 58.956 33.333 0.00 0.00 34.37 1.40
2626 2800 9.377312 CATTAGGGTTTAAATGGGTGTTTTATG 57.623 33.333 0.00 0.00 30.93 1.90
2627 2801 6.367374 AGGGTTTAAATGGGTGTTTTATGG 57.633 37.500 0.00 0.00 0.00 2.74
2628 2802 6.085416 AGGGTTTAAATGGGTGTTTTATGGA 58.915 36.000 0.00 0.00 0.00 3.41
2629 2803 6.559157 AGGGTTTAAATGGGTGTTTTATGGAA 59.441 34.615 0.00 0.00 0.00 3.53
2630 2804 7.238723 AGGGTTTAAATGGGTGTTTTATGGAAT 59.761 33.333 0.00 0.00 0.00 3.01
2631 2805 7.885922 GGGTTTAAATGGGTGTTTTATGGAATT 59.114 33.333 0.00 0.00 0.00 2.17
2632 2806 9.290988 GGTTTAAATGGGTGTTTTATGGAATTT 57.709 29.630 0.00 0.00 0.00 1.82
2674 2861 2.117137 CGACCAACAATATCGTCTCCG 58.883 52.381 0.00 0.00 0.00 4.63
2691 2878 0.456221 CCGTCTACCGAACTGAGCAT 59.544 55.000 0.00 0.00 39.56 3.79
2705 2892 3.529533 CTGAGCATAAAGTCAGGGTCAG 58.470 50.000 0.00 0.00 44.97 3.51
2713 2900 4.988716 TCAGGGTCAGCGTCCGGT 62.989 66.667 0.00 0.00 0.00 5.28
2771 2958 2.380410 GCCAACACCGCGACTACAG 61.380 63.158 8.23 0.00 0.00 2.74
3059 3247 5.587289 ACAAATACAATGTTTGTTCAGCGT 58.413 33.333 0.00 0.00 44.84 5.07
3195 3383 3.708631 ACTATGACCTAGCACTGCTCATT 59.291 43.478 6.86 0.00 40.44 2.57
3327 3516 4.021544 CCCCTAAACTGCTGCATTTGTTTA 60.022 41.667 18.61 18.61 34.88 2.01
3367 3556 6.942005 TCTCATGAATGACCTTTCTTTGCTTA 59.058 34.615 0.00 0.00 32.50 3.09
4007 4196 4.021368 TCCAGCTTCTTACCAAGTCACTAC 60.021 45.833 0.00 0.00 0.00 2.73
4233 4445 2.225068 ACAGCCGATCCATTAAGTCG 57.775 50.000 0.00 0.00 35.29 4.18
4314 4526 7.530010 ACACATACAAATGCTGTCACTTTATC 58.470 34.615 0.00 0.00 39.64 1.75
4510 4722 6.275335 CAGTTATACCAAAAATCCATGCTGG 58.725 40.000 0.00 0.00 39.43 4.85
4684 4898 0.729478 CACACTAGTGCACCTCGACG 60.729 60.000 22.90 0.00 39.21 5.12
4685 4899 0.887836 ACACTAGTGCACCTCGACGA 60.888 55.000 22.90 0.00 0.00 4.20
4857 5071 0.669077 CGAGTGATAAGGTAGCCGCT 59.331 55.000 0.00 0.00 0.00 5.52
4858 5072 1.335142 CGAGTGATAAGGTAGCCGCTC 60.335 57.143 0.00 0.00 34.02 5.03
4870 5084 4.749310 CCGCTCTGTCTTGGCGCT 62.749 66.667 7.64 0.00 46.29 5.92
4873 5087 2.161486 GCTCTGTCTTGGCGCTACG 61.161 63.158 7.64 0.00 0.00 3.51
4908 5122 0.038892 TCGCCGTGACTCTGTAAACC 60.039 55.000 0.00 0.00 0.00 3.27
4930 5144 1.809133 TGTAACACTGGTCCTTGGGA 58.191 50.000 0.00 0.00 0.00 4.37
5126 5345 0.756294 TGCACCACCTATATGGACCG 59.244 55.000 0.00 0.00 43.02 4.79
5675 5898 4.194640 CACTATCCCTCTGGTTCACATTG 58.805 47.826 0.00 0.00 0.00 2.82
5687 5910 5.799213 TGGTTCACATTGTTTTTCTTGGTT 58.201 33.333 0.00 0.00 0.00 3.67
6068 6302 5.954296 CATAGTATGCAAGCAGGCTTAAT 57.046 39.130 6.16 6.43 34.50 1.40
6090 6324 1.362768 TCATGTGCAGTCATTCGAGC 58.637 50.000 0.00 0.00 0.00 5.03
6111 6345 4.081697 AGCAAGGAACCGGAATTAAATTGG 60.082 41.667 9.46 0.00 0.00 3.16
6216 6450 0.323629 CGCTTGGGGTTAGAACTGGA 59.676 55.000 0.00 0.00 0.00 3.86
6228 6462 5.414765 GGTTAGAACTGGAGTAAATGTTGGG 59.585 44.000 0.00 0.00 0.00 4.12
6232 6466 2.009774 CTGGAGTAAATGTTGGGAGCG 58.990 52.381 0.00 0.00 0.00 5.03
6313 6547 7.171678 GCCTATCTCATTGTACCAATCTTGTAC 59.828 40.741 0.00 0.00 0.00 2.90
6349 6583 3.153369 TGTTCTTATGCCCTGCAGAAA 57.847 42.857 17.39 0.00 43.65 2.52
6416 6650 2.507854 GCCCCTGCAGATAGGCGTA 61.508 63.158 21.55 0.00 36.47 4.42
6419 6653 1.204941 CCCCTGCAGATAGGCGTATAC 59.795 57.143 17.39 0.00 36.47 1.47
6427 6661 4.101119 GCAGATAGGCGTATACCCCATTAT 59.899 45.833 9.24 0.00 0.00 1.28
6434 6689 4.309099 GCGTATACCCCATTATCAAACGA 58.691 43.478 0.00 0.00 0.00 3.85
6478 6733 4.508461 TTTCATGTTTCTGCATGTCCTG 57.492 40.909 6.04 0.00 44.68 3.86
6544 6814 8.899427 ATCTACATCACCAGACAAAGATTATG 57.101 34.615 0.00 0.00 0.00 1.90
6569 6839 2.810274 CCACTCATCGCCAATAATCAGG 59.190 50.000 0.00 0.00 0.00 3.86
6694 6964 0.912486 GGGGAACACTCCAGCACTAT 59.088 55.000 0.00 0.00 44.51 2.12
6701 6971 5.360144 GGAACACTCCAGCACTATTAGTAGA 59.640 44.000 0.00 0.00 41.96 2.59
6714 6984 4.882671 ATTAGTAGAATGGTTGCGCTTG 57.117 40.909 9.73 0.00 0.00 4.01
6742 7012 2.743664 TCCAGAACATTTCAGCATCACG 59.256 45.455 0.00 0.00 0.00 4.35
6756 7026 5.532779 TCAGCATCACGAGATATCTTGTACT 59.467 40.000 22.68 15.24 38.50 2.73
6757 7027 6.710744 TCAGCATCACGAGATATCTTGTACTA 59.289 38.462 22.68 13.05 38.50 1.82
6758 7028 7.020602 CAGCATCACGAGATATCTTGTACTAG 58.979 42.308 22.68 12.26 38.50 2.57
6759 7029 6.712998 AGCATCACGAGATATCTTGTACTAGT 59.287 38.462 22.68 0.00 38.50 2.57
6760 7030 7.878644 AGCATCACGAGATATCTTGTACTAGTA 59.121 37.037 22.68 0.00 38.50 1.82
6761 7031 8.172484 GCATCACGAGATATCTTGTACTAGTAG 58.828 40.741 22.68 10.69 38.50 2.57
6762 7032 9.425577 CATCACGAGATATCTTGTACTAGTAGA 57.574 37.037 22.68 14.97 38.50 2.59
6763 7033 9.999660 ATCACGAGATATCTTGTACTAGTAGAA 57.000 33.333 22.68 11.62 38.50 2.10
6764 7034 9.828039 TCACGAGATATCTTGTACTAGTAGAAA 57.172 33.333 22.68 5.98 38.50 2.52
6766 7036 9.835389 ACGAGATATCTTGTACTAGTAGAAAGT 57.165 33.333 21.99 7.60 38.76 2.66
6773 7043 8.687292 TCTTGTACTAGTAGAAAGTTGAGACA 57.313 34.615 13.00 0.00 0.00 3.41
6774 7044 8.566260 TCTTGTACTAGTAGAAAGTTGAGACAC 58.434 37.037 13.00 0.00 0.00 3.67
6775 7045 8.461249 TTGTACTAGTAGAAAGTTGAGACACT 57.539 34.615 9.89 0.00 0.00 3.55
6776 7046 8.461249 TGTACTAGTAGAAAGTTGAGACACTT 57.539 34.615 1.87 0.00 38.74 3.16
6777 7047 9.565090 TGTACTAGTAGAAAGTTGAGACACTTA 57.435 33.333 1.87 0.00 35.87 2.24
6783 7053 9.057089 AGTAGAAAGTTGAGACACTTATTTTGG 57.943 33.333 0.00 0.00 35.87 3.28
6784 7054 7.881775 AGAAAGTTGAGACACTTATTTTGGT 57.118 32.000 0.00 0.00 35.87 3.67
6785 7055 8.974060 AGAAAGTTGAGACACTTATTTTGGTA 57.026 30.769 0.00 0.00 35.87 3.25
6786 7056 8.837389 AGAAAGTTGAGACACTTATTTTGGTAC 58.163 33.333 0.00 0.00 35.87 3.34
6787 7057 6.780706 AGTTGAGACACTTATTTTGGTACG 57.219 37.500 0.00 0.00 0.00 3.67
6788 7058 5.699458 AGTTGAGACACTTATTTTGGTACGG 59.301 40.000 0.00 0.00 0.00 4.02
6789 7059 5.471556 TGAGACACTTATTTTGGTACGGA 57.528 39.130 0.00 0.00 0.00 4.69
6790 7060 5.475719 TGAGACACTTATTTTGGTACGGAG 58.524 41.667 0.00 0.00 0.00 4.63
6791 7061 4.828829 AGACACTTATTTTGGTACGGAGG 58.171 43.478 0.00 0.00 0.00 4.30
6792 7062 3.937079 GACACTTATTTTGGTACGGAGGG 59.063 47.826 0.00 0.00 0.00 4.30
6793 7063 3.583966 ACACTTATTTTGGTACGGAGGGA 59.416 43.478 0.00 0.00 0.00 4.20
6794 7064 4.189231 CACTTATTTTGGTACGGAGGGAG 58.811 47.826 0.00 0.00 0.00 4.30
6854 7124 9.662947 TGATCATGATTTCCTACATATCACATC 57.337 33.333 10.14 0.00 31.66 3.06
6993 7263 8.078060 ACATTCTCTTTTTCCCTTTCTGAAAA 57.922 30.769 4.18 0.00 39.30 2.29
7346 7620 1.073897 AGCTGCCCTTCAACTGTCC 59.926 57.895 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.966920 ACTACTGGGACGTGTGAAGG 59.033 55.000 0.00 0.00 0.00 3.46
16 17 4.274459 GGTATAGTACTACTGGGACGTGTG 59.726 50.000 4.31 0.00 0.00 3.82
79 80 8.834004 TGTTGGTTCATACTAGGAGTATACTT 57.166 34.615 6.88 0.00 39.26 2.24
81 82 8.693625 AGTTGTTGGTTCATACTAGGAGTATAC 58.306 37.037 0.00 0.00 39.26 1.47
82 83 8.834004 AGTTGTTGGTTCATACTAGGAGTATA 57.166 34.615 0.00 0.00 39.26 1.47
83 84 7.735326 AGTTGTTGGTTCATACTAGGAGTAT 57.265 36.000 0.00 0.00 41.82 2.12
86 87 5.122396 GCAAGTTGTTGGTTCATACTAGGAG 59.878 44.000 4.48 0.00 33.87 3.69
87 88 5.001232 GCAAGTTGTTGGTTCATACTAGGA 58.999 41.667 4.48 0.00 33.87 2.94
88 89 4.142902 CGCAAGTTGTTGGTTCATACTAGG 60.143 45.833 4.48 0.00 33.87 3.02
89 90 4.669197 GCGCAAGTTGTTGGTTCATACTAG 60.669 45.833 0.30 0.00 41.68 2.57
90 91 3.187637 GCGCAAGTTGTTGGTTCATACTA 59.812 43.478 0.30 0.00 41.68 1.82
91 92 2.031157 GCGCAAGTTGTTGGTTCATACT 60.031 45.455 0.30 0.00 41.68 2.12
92 93 2.315901 GCGCAAGTTGTTGGTTCATAC 58.684 47.619 0.30 0.00 41.68 2.39
93 94 1.268352 GGCGCAAGTTGTTGGTTCATA 59.732 47.619 10.83 0.00 41.68 2.15
94 95 0.031994 GGCGCAAGTTGTTGGTTCAT 59.968 50.000 10.83 0.00 41.68 2.57
95 96 1.034838 AGGCGCAAGTTGTTGGTTCA 61.035 50.000 10.83 0.00 41.68 3.18
96 97 0.102300 AAGGCGCAAGTTGTTGGTTC 59.898 50.000 10.83 0.00 41.68 3.62
97 98 0.102300 GAAGGCGCAAGTTGTTGGTT 59.898 50.000 10.83 0.00 41.68 3.67
102 103 1.001378 GACAATGAAGGCGCAAGTTGT 60.001 47.619 10.83 12.36 41.68 3.32
125 126 2.166459 CAGCTTCCATCTCGTACAGGAA 59.834 50.000 0.00 0.00 37.79 3.36
189 190 7.680730 TGGAAGAGAAGCACTAAGAAACTATT 58.319 34.615 0.00 0.00 0.00 1.73
191 192 6.665992 TGGAAGAGAAGCACTAAGAAACTA 57.334 37.500 0.00 0.00 0.00 2.24
197 198 8.329203 AGTAATTTTGGAAGAGAAGCACTAAG 57.671 34.615 0.00 0.00 0.00 2.18
209 210 7.682021 GCAGCCCTAACATAGTAATTTTGGAAG 60.682 40.741 0.00 0.00 0.00 3.46
221 222 2.548920 GCCTACAGCAGCCCTAACATAG 60.549 54.545 0.00 0.00 42.97 2.23
225 226 4.542075 GCCTACAGCAGCCCTAAC 57.458 61.111 0.00 0.00 42.97 2.34
234 235 2.124942 GCCTCACCAGCCTACAGC 60.125 66.667 0.00 0.00 44.25 4.40
236 237 1.679311 CAAGCCTCACCAGCCTACA 59.321 57.895 0.00 0.00 0.00 2.74
237 238 1.746991 GCAAGCCTCACCAGCCTAC 60.747 63.158 0.00 0.00 0.00 3.18
239 240 3.255397 AGCAAGCCTCACCAGCCT 61.255 61.111 0.00 0.00 0.00 4.58
241 242 3.123620 CGAGCAAGCCTCACCAGC 61.124 66.667 0.00 0.00 40.78 4.85
242 243 2.435586 CCGAGCAAGCCTCACCAG 60.436 66.667 0.00 0.00 40.78 4.00
243 244 2.337879 AAACCGAGCAAGCCTCACCA 62.338 55.000 0.00 0.00 40.78 4.17
244 245 0.321298 TAAACCGAGCAAGCCTCACC 60.321 55.000 0.00 0.00 40.78 4.02
245 246 1.079503 CTAAACCGAGCAAGCCTCAC 58.920 55.000 0.00 0.00 40.78 3.51
246 247 0.685097 ACTAAACCGAGCAAGCCTCA 59.315 50.000 0.00 0.00 40.78 3.86
247 248 1.066787 AGACTAAACCGAGCAAGCCTC 60.067 52.381 0.00 0.00 37.22 4.70
248 249 0.977395 AGACTAAACCGAGCAAGCCT 59.023 50.000 0.00 0.00 0.00 4.58
249 250 1.337823 TGAGACTAAACCGAGCAAGCC 60.338 52.381 0.00 0.00 0.00 4.35
251 252 3.305398 AGTGAGACTAAACCGAGCAAG 57.695 47.619 0.00 0.00 0.00 4.01
252 253 3.650139 GAAGTGAGACTAAACCGAGCAA 58.350 45.455 0.00 0.00 0.00 3.91
254 255 2.251893 CGAAGTGAGACTAAACCGAGC 58.748 52.381 0.00 0.00 0.00 5.03
255 256 2.095161 AGCGAAGTGAGACTAAACCGAG 60.095 50.000 0.00 0.00 0.00 4.63
257 258 2.349297 AGCGAAGTGAGACTAAACCG 57.651 50.000 0.00 0.00 0.00 4.44
258 259 2.157863 GCAAGCGAAGTGAGACTAAACC 59.842 50.000 0.00 0.00 0.00 3.27
260 261 2.058798 CGCAAGCGAAGTGAGACTAAA 58.941 47.619 9.11 0.00 42.83 1.85
262 263 0.109272 CCGCAAGCGAAGTGAGACTA 60.109 55.000 16.97 0.00 42.83 2.59
263 264 1.373497 CCGCAAGCGAAGTGAGACT 60.373 57.895 16.97 0.00 42.83 3.24
264 265 2.383527 CCCGCAAGCGAAGTGAGAC 61.384 63.158 16.97 0.00 42.83 3.36
266 267 2.048222 TCCCGCAAGCGAAGTGAG 60.048 61.111 16.97 0.00 42.83 3.51
267 268 2.048222 CTCCCGCAAGCGAAGTGA 60.048 61.111 16.97 5.98 42.83 3.41
268 269 3.121030 CCTCCCGCAAGCGAAGTG 61.121 66.667 16.97 7.64 42.83 3.16
270 271 2.510238 CTCCTCCCGCAAGCGAAG 60.510 66.667 16.97 12.24 42.83 3.79
271 272 4.082523 CCTCCTCCCGCAAGCGAA 62.083 66.667 16.97 2.69 42.83 4.70
275 276 3.801997 ATGGCCTCCTCCCGCAAG 61.802 66.667 3.32 0.00 0.00 4.01
276 277 4.113815 CATGGCCTCCTCCCGCAA 62.114 66.667 3.32 0.00 0.00 4.85
278 279 4.554036 GTCATGGCCTCCTCCCGC 62.554 72.222 3.32 0.00 0.00 6.13
280 281 2.692368 TGGTCATGGCCTCCTCCC 60.692 66.667 19.09 0.00 0.00 4.30
281 282 2.914289 CTGGTCATGGCCTCCTCC 59.086 66.667 19.09 2.29 0.00 4.30
282 283 1.919600 AAGCTGGTCATGGCCTCCTC 61.920 60.000 19.09 3.82 0.00 3.71
283 284 0.621571 TAAGCTGGTCATGGCCTCCT 60.622 55.000 19.09 10.65 0.00 3.69
285 286 3.406764 CTTATAAGCTGGTCATGGCCTC 58.593 50.000 19.09 9.47 0.00 4.70
287 288 2.508526 CCTTATAAGCTGGTCATGGCC 58.491 52.381 10.20 10.20 0.00 5.36
288 289 2.106511 TCCCTTATAAGCTGGTCATGGC 59.893 50.000 6.99 0.00 0.00 4.40
289 290 3.648067 TCTCCCTTATAAGCTGGTCATGG 59.352 47.826 6.99 0.81 0.00 3.66
290 291 4.590647 TCTCTCCCTTATAAGCTGGTCATG 59.409 45.833 6.99 0.00 0.00 3.07
291 292 4.820775 TCTCTCCCTTATAAGCTGGTCAT 58.179 43.478 6.99 0.00 0.00 3.06
292 293 4.265856 TCTCTCCCTTATAAGCTGGTCA 57.734 45.455 6.99 0.00 0.00 4.02
293 294 5.279758 GGAATCTCTCCCTTATAAGCTGGTC 60.280 48.000 6.99 0.00 38.44 4.02
295 296 4.843516 AGGAATCTCTCCCTTATAAGCTGG 59.156 45.833 6.99 4.34 46.81 4.85
296 297 6.432403 AAGGAATCTCTCCCTTATAAGCTG 57.568 41.667 6.99 0.78 46.81 4.24
297 298 5.546110 GGAAGGAATCTCTCCCTTATAAGCT 59.454 44.000 6.99 0.00 46.81 3.74
298 299 5.546110 AGGAAGGAATCTCTCCCTTATAAGC 59.454 44.000 6.99 0.00 46.81 3.09
299 300 6.784969 TGAGGAAGGAATCTCTCCCTTATAAG 59.215 42.308 5.43 5.43 46.81 1.73
300 301 6.555360 GTGAGGAAGGAATCTCTCCCTTATAA 59.445 42.308 0.00 0.00 46.81 0.98
302 303 4.904853 GTGAGGAAGGAATCTCTCCCTTAT 59.095 45.833 0.00 0.00 46.81 1.73
304 305 3.111484 GTGAGGAAGGAATCTCTCCCTT 58.889 50.000 0.00 0.00 46.81 3.95
306 307 2.758130 AGTGAGGAAGGAATCTCTCCC 58.242 52.381 0.00 0.00 46.81 4.30
307 308 3.772025 TGAAGTGAGGAAGGAATCTCTCC 59.228 47.826 0.00 0.00 45.81 3.71
309 310 4.424842 ACTGAAGTGAGGAAGGAATCTCT 58.575 43.478 0.00 0.00 0.00 3.10
311 312 3.517500 GGACTGAAGTGAGGAAGGAATCT 59.482 47.826 0.00 0.00 0.00 2.40
312 313 3.677424 CGGACTGAAGTGAGGAAGGAATC 60.677 52.174 0.00 0.00 0.00 2.52
313 314 2.234908 CGGACTGAAGTGAGGAAGGAAT 59.765 50.000 0.00 0.00 0.00 3.01
314 315 1.618837 CGGACTGAAGTGAGGAAGGAA 59.381 52.381 0.00 0.00 0.00 3.36
316 317 0.247736 CCGGACTGAAGTGAGGAAGG 59.752 60.000 0.00 0.00 0.00 3.46
318 319 1.827399 GCCCGGACTGAAGTGAGGAA 61.827 60.000 0.73 0.00 0.00 3.36
319 320 2.283529 GCCCGGACTGAAGTGAGGA 61.284 63.158 0.73 0.00 0.00 3.71
320 321 1.831652 AAGCCCGGACTGAAGTGAGG 61.832 60.000 0.73 0.00 0.00 3.86
322 323 0.472471 AAAAGCCCGGACTGAAGTGA 59.528 50.000 0.73 0.00 0.00 3.41
323 324 0.593128 CAAAAGCCCGGACTGAAGTG 59.407 55.000 0.73 0.00 0.00 3.16
324 325 0.537371 CCAAAAGCCCGGACTGAAGT 60.537 55.000 0.73 0.00 0.00 3.01
325 326 1.244019 CCCAAAAGCCCGGACTGAAG 61.244 60.000 0.73 0.00 0.00 3.02
327 328 1.497309 ATCCCAAAAGCCCGGACTGA 61.497 55.000 0.73 0.00 0.00 3.41
329 330 1.000896 CATCCCAAAAGCCCGGACT 60.001 57.895 0.73 0.00 0.00 3.85
330 331 2.052104 CCATCCCAAAAGCCCGGAC 61.052 63.158 0.73 0.00 0.00 4.79
331 332 2.210144 CTCCATCCCAAAAGCCCGGA 62.210 60.000 0.73 0.00 0.00 5.14
332 333 1.754234 CTCCATCCCAAAAGCCCGG 60.754 63.158 0.00 0.00 0.00 5.73
333 334 1.000896 ACTCCATCCCAAAAGCCCG 60.001 57.895 0.00 0.00 0.00 6.13
334 335 0.972471 CCACTCCATCCCAAAAGCCC 60.972 60.000 0.00 0.00 0.00 5.19
335 336 0.972471 CCCACTCCATCCCAAAAGCC 60.972 60.000 0.00 0.00 0.00 4.35
337 338 0.040204 AGCCCACTCCATCCCAAAAG 59.960 55.000 0.00 0.00 0.00 2.27
338 339 0.039618 GAGCCCACTCCATCCCAAAA 59.960 55.000 0.00 0.00 36.90 2.44
339 340 0.846427 AGAGCCCACTCCATCCCAAA 60.846 55.000 0.00 0.00 44.65 3.28
341 342 1.690633 GAGAGCCCACTCCATCCCA 60.691 63.158 0.00 0.00 44.65 4.37
342 343 1.383803 AGAGAGCCCACTCCATCCC 60.384 63.158 0.00 0.00 44.65 3.85
343 344 1.828768 CAGAGAGCCCACTCCATCC 59.171 63.158 0.00 0.00 44.65 3.51
344 345 1.145819 GCAGAGAGCCCACTCCATC 59.854 63.158 0.00 0.00 44.65 3.51
345 346 3.318191 GCAGAGAGCCCACTCCAT 58.682 61.111 0.00 0.00 44.65 3.41
355 356 1.467734 GGCACAACATTCAGCAGAGAG 59.532 52.381 0.00 0.00 0.00 3.20
356 357 1.202794 TGGCACAACATTCAGCAGAGA 60.203 47.619 0.00 0.00 31.92 3.10
357 358 1.241165 TGGCACAACATTCAGCAGAG 58.759 50.000 0.00 0.00 31.92 3.35
358 359 3.418022 TGGCACAACATTCAGCAGA 57.582 47.368 0.00 0.00 31.92 4.26
370 371 0.109365 GTTTATGCGCACATGGCACA 60.109 50.000 14.90 0.00 44.23 4.57
371 372 1.133363 CGTTTATGCGCACATGGCAC 61.133 55.000 14.90 2.87 44.23 5.01
373 374 0.861450 GACGTTTATGCGCACATGGC 60.861 55.000 14.90 3.33 37.04 4.40
374 375 0.248054 GGACGTTTATGCGCACATGG 60.248 55.000 14.90 3.69 37.04 3.66
375 376 0.445829 TGGACGTTTATGCGCACATG 59.554 50.000 14.90 8.08 37.04 3.21
376 377 0.726827 CTGGACGTTTATGCGCACAT 59.273 50.000 14.90 0.00 40.49 3.21
377 378 0.319986 TCTGGACGTTTATGCGCACA 60.320 50.000 14.90 0.00 34.88 4.57
378 379 0.793861 TTCTGGACGTTTATGCGCAC 59.206 50.000 14.90 0.00 34.88 5.34
380 381 1.396996 ACATTCTGGACGTTTATGCGC 59.603 47.619 0.00 0.00 34.88 6.09
381 382 4.328983 ACTTACATTCTGGACGTTTATGCG 59.671 41.667 0.00 0.00 37.94 4.73
383 384 7.974501 ACTCTACTTACATTCTGGACGTTTATG 59.025 37.037 0.00 0.00 0.00 1.90
384 385 7.974501 CACTCTACTTACATTCTGGACGTTTAT 59.025 37.037 0.00 0.00 0.00 1.40
385 386 7.040201 ACACTCTACTTACATTCTGGACGTTTA 60.040 37.037 0.00 0.00 0.00 2.01
388 389 4.765856 ACACTCTACTTACATTCTGGACGT 59.234 41.667 0.00 0.00 0.00 4.34
389 390 5.096169 CACACTCTACTTACATTCTGGACG 58.904 45.833 0.00 0.00 0.00 4.79
390 391 5.411781 CCACACTCTACTTACATTCTGGAC 58.588 45.833 0.00 0.00 0.00 4.02
391 392 4.466370 CCCACACTCTACTTACATTCTGGA 59.534 45.833 0.00 0.00 0.00 3.86
392 393 4.759782 CCCACACTCTACTTACATTCTGG 58.240 47.826 0.00 0.00 0.00 3.86
393 394 4.081420 AGCCCACACTCTACTTACATTCTG 60.081 45.833 0.00 0.00 0.00 3.02
394 395 4.097418 AGCCCACACTCTACTTACATTCT 58.903 43.478 0.00 0.00 0.00 2.40
395 396 4.473477 AGCCCACACTCTACTTACATTC 57.527 45.455 0.00 0.00 0.00 2.67
396 397 5.269991 TCTAGCCCACACTCTACTTACATT 58.730 41.667 0.00 0.00 0.00 2.71
397 398 4.868268 TCTAGCCCACACTCTACTTACAT 58.132 43.478 0.00 0.00 0.00 2.29
398 399 4.311520 TCTAGCCCACACTCTACTTACA 57.688 45.455 0.00 0.00 0.00 2.41
399 400 4.888239 TGATCTAGCCCACACTCTACTTAC 59.112 45.833 0.00 0.00 0.00 2.34
400 401 5.125367 TGATCTAGCCCACACTCTACTTA 57.875 43.478 0.00 0.00 0.00 2.24
402 403 3.671740 TGATCTAGCCCACACTCTACT 57.328 47.619 0.00 0.00 0.00 2.57
403 404 3.702045 ACTTGATCTAGCCCACACTCTAC 59.298 47.826 3.93 0.00 0.00 2.59
407 408 2.026822 CCAACTTGATCTAGCCCACACT 60.027 50.000 3.93 0.00 0.00 3.55
408 409 2.027192 TCCAACTTGATCTAGCCCACAC 60.027 50.000 3.93 0.00 0.00 3.82
409 410 2.027192 GTCCAACTTGATCTAGCCCACA 60.027 50.000 3.93 0.00 0.00 4.17
410 411 2.633488 GTCCAACTTGATCTAGCCCAC 58.367 52.381 3.93 0.00 0.00 4.61
411 412 1.207089 CGTCCAACTTGATCTAGCCCA 59.793 52.381 3.93 0.00 0.00 5.36
412 413 1.941325 CGTCCAACTTGATCTAGCCC 58.059 55.000 3.93 0.00 0.00 5.19
413 414 1.134670 AGCGTCCAACTTGATCTAGCC 60.135 52.381 3.93 0.00 0.00 3.93
414 415 2.301577 AGCGTCCAACTTGATCTAGC 57.698 50.000 3.93 0.00 0.00 3.42
416 417 4.794278 TGTTAGCGTCCAACTTGATCTA 57.206 40.909 0.00 0.00 0.00 1.98
417 418 3.678056 TGTTAGCGTCCAACTTGATCT 57.322 42.857 0.00 0.00 0.00 2.75
418 419 4.033358 CAGATGTTAGCGTCCAACTTGATC 59.967 45.833 0.00 0.00 0.00 2.92
421 422 2.416547 CCAGATGTTAGCGTCCAACTTG 59.583 50.000 0.00 0.00 0.00 3.16
422 423 2.038557 ACCAGATGTTAGCGTCCAACTT 59.961 45.455 0.00 0.00 0.00 2.66
423 424 1.623811 ACCAGATGTTAGCGTCCAACT 59.376 47.619 0.00 0.00 0.00 3.16
424 425 2.094762 ACCAGATGTTAGCGTCCAAC 57.905 50.000 0.00 0.00 0.00 3.77
425 426 3.449377 TGATACCAGATGTTAGCGTCCAA 59.551 43.478 0.00 0.00 0.00 3.53
426 427 3.028130 TGATACCAGATGTTAGCGTCCA 58.972 45.455 0.00 0.00 0.00 4.02
427 428 3.318275 TCTGATACCAGATGTTAGCGTCC 59.682 47.826 0.00 0.00 44.01 4.79
428 429 4.569761 TCTGATACCAGATGTTAGCGTC 57.430 45.455 0.00 0.00 44.01 5.19
440 441 0.390492 CGATGCTGGCTCTGATACCA 59.610 55.000 0.31 0.31 0.00 3.25
441 442 0.948141 GCGATGCTGGCTCTGATACC 60.948 60.000 0.00 0.00 0.00 2.73
442 443 0.948141 GGCGATGCTGGCTCTGATAC 60.948 60.000 0.00 0.00 0.00 2.24
443 444 1.368950 GGCGATGCTGGCTCTGATA 59.631 57.895 0.00 0.00 0.00 2.15
444 445 2.053259 ATGGCGATGCTGGCTCTGAT 62.053 55.000 0.00 0.00 35.06 2.90
445 446 2.738938 ATGGCGATGCTGGCTCTGA 61.739 57.895 0.00 0.00 35.06 3.27
446 447 2.203167 ATGGCGATGCTGGCTCTG 60.203 61.111 0.00 0.00 35.06 3.35
447 448 2.203167 CATGGCGATGCTGGCTCT 60.203 61.111 0.00 0.00 35.06 4.09
455 456 1.153107 TCAGGAAGGCATGGCGATG 60.153 57.895 14.30 4.04 0.00 3.84
456 457 1.147824 CTCAGGAAGGCATGGCGAT 59.852 57.895 14.30 6.99 0.00 4.58
457 458 2.586245 CTCAGGAAGGCATGGCGA 59.414 61.111 14.30 3.61 0.00 5.54
458 459 2.515523 CCTCAGGAAGGCATGGCG 60.516 66.667 14.30 0.00 38.67 5.69
459 460 2.123982 CCCTCAGGAAGGCATGGC 60.124 66.667 12.14 12.14 44.71 4.40
461 462 2.123982 GCCCCTCAGGAAGGCATG 60.124 66.667 6.11 0.00 46.34 4.06
464 465 2.264120 GAGAAGCCCCTCAGGAAGGC 62.264 65.000 2.70 2.70 44.71 4.35
465 466 0.911525 TGAGAAGCCCCTCAGGAAGG 60.912 60.000 0.00 0.00 45.77 3.46
466 467 0.987294 TTGAGAAGCCCCTCAGGAAG 59.013 55.000 0.00 0.00 43.28 3.46
467 468 0.987294 CTTGAGAAGCCCCTCAGGAA 59.013 55.000 8.74 0.00 43.28 3.36
469 470 1.606531 CCTTGAGAAGCCCCTCAGG 59.393 63.158 7.75 7.75 43.28 3.86
470 471 1.606531 CCCTTGAGAAGCCCCTCAG 59.393 63.158 5.88 2.18 43.28 3.35
471 472 1.925455 CCCCTTGAGAAGCCCCTCA 60.925 63.158 1.89 1.89 41.06 3.86
472 473 0.990818 ATCCCCTTGAGAAGCCCCTC 60.991 60.000 0.00 0.00 0.00 4.30
474 475 1.228510 CATCCCCTTGAGAAGCCCC 59.771 63.158 0.00 0.00 0.00 5.80
475 476 1.228510 CCATCCCCTTGAGAAGCCC 59.771 63.158 0.00 0.00 0.00 5.19
476 477 1.228510 CCCATCCCCTTGAGAAGCC 59.771 63.158 0.00 0.00 0.00 4.35
477 478 0.849417 ATCCCATCCCCTTGAGAAGC 59.151 55.000 0.00 0.00 0.00 3.86
478 479 1.849039 ACATCCCATCCCCTTGAGAAG 59.151 52.381 0.00 0.00 0.00 2.85
479 480 1.985622 ACATCCCATCCCCTTGAGAA 58.014 50.000 0.00 0.00 0.00 2.87
480 481 1.985622 AACATCCCATCCCCTTGAGA 58.014 50.000 0.00 0.00 0.00 3.27
481 482 2.107204 CCTAACATCCCATCCCCTTGAG 59.893 54.545 0.00 0.00 0.00 3.02
482 483 2.135189 CCTAACATCCCATCCCCTTGA 58.865 52.381 0.00 0.00 0.00 3.02
483 484 1.145738 CCCTAACATCCCATCCCCTTG 59.854 57.143 0.00 0.00 0.00 3.61
485 486 1.068352 GCCCTAACATCCCATCCCCT 61.068 60.000 0.00 0.00 0.00 4.79
486 487 1.068352 AGCCCTAACATCCCATCCCC 61.068 60.000 0.00 0.00 0.00 4.81
487 488 0.111253 CAGCCCTAACATCCCATCCC 59.889 60.000 0.00 0.00 0.00 3.85
488 489 0.538287 GCAGCCCTAACATCCCATCC 60.538 60.000 0.00 0.00 0.00 3.51
489 490 0.475906 AGCAGCCCTAACATCCCATC 59.524 55.000 0.00 0.00 0.00 3.51
491 492 1.207488 ACAGCAGCCCTAACATCCCA 61.207 55.000 0.00 0.00 0.00 4.37
492 493 0.837272 TACAGCAGCCCTAACATCCC 59.163 55.000 0.00 0.00 0.00 3.85
493 494 1.202698 CCTACAGCAGCCCTAACATCC 60.203 57.143 0.00 0.00 0.00 3.51
494 495 1.811941 GCCTACAGCAGCCCTAACATC 60.812 57.143 0.00 0.00 42.97 3.06
495 496 0.181350 GCCTACAGCAGCCCTAACAT 59.819 55.000 0.00 0.00 42.97 2.71
496 497 1.602237 GCCTACAGCAGCCCTAACA 59.398 57.895 0.00 0.00 42.97 2.41
503 504 4.082523 TCACCGGCCTACAGCAGC 62.083 66.667 0.00 0.00 46.50 5.25
504 505 2.185350 CTCACCGGCCTACAGCAG 59.815 66.667 0.00 0.00 46.50 4.24
505 506 3.390521 CCTCACCGGCCTACAGCA 61.391 66.667 0.00 0.00 46.50 4.41
516 517 2.180159 TAAACCGAGCCAGCCTCACC 62.180 60.000 0.00 0.00 40.78 4.02
517 518 0.741221 CTAAACCGAGCCAGCCTCAC 60.741 60.000 0.00 0.00 40.78 3.51
518 519 1.192146 ACTAAACCGAGCCAGCCTCA 61.192 55.000 0.00 0.00 40.78 3.86
519 520 0.460459 GACTAAACCGAGCCAGCCTC 60.460 60.000 0.00 0.00 37.22 4.70
521 522 1.449778 GGACTAAACCGAGCCAGCC 60.450 63.158 0.00 0.00 0.00 4.85
522 523 1.449778 GGGACTAAACCGAGCCAGC 60.450 63.158 0.00 0.00 0.00 4.85
523 524 0.391263 GTGGGACTAAACCGAGCCAG 60.391 60.000 0.00 0.00 0.00 4.85
524 525 1.675219 GTGGGACTAAACCGAGCCA 59.325 57.895 0.00 0.00 0.00 4.75
525 526 1.078637 GGTGGGACTAAACCGAGCC 60.079 63.158 0.00 0.00 31.71 4.70
526 527 0.108281 GAGGTGGGACTAAACCGAGC 60.108 60.000 0.00 0.00 41.61 5.03
527 528 1.067071 GTGAGGTGGGACTAAACCGAG 60.067 57.143 0.00 0.00 41.61 4.63
528 529 0.971386 GTGAGGTGGGACTAAACCGA 59.029 55.000 0.00 0.00 41.61 4.69
529 530 0.974383 AGTGAGGTGGGACTAAACCG 59.026 55.000 0.00 0.00 41.61 4.44
530 531 2.779506 CAAGTGAGGTGGGACTAAACC 58.220 52.381 0.00 0.00 36.66 3.27
531 532 2.152016 GCAAGTGAGGTGGGACTAAAC 58.848 52.381 0.00 0.00 0.00 2.01
532 533 1.771854 TGCAAGTGAGGTGGGACTAAA 59.228 47.619 0.00 0.00 0.00 1.85
533 534 1.347707 CTGCAAGTGAGGTGGGACTAA 59.652 52.381 0.00 0.00 0.00 2.24
536 537 1.302832 CCTGCAAGTGAGGTGGGAC 60.303 63.158 0.00 0.00 0.00 4.46
537 538 1.461268 TCCTGCAAGTGAGGTGGGA 60.461 57.895 0.00 0.00 31.85 4.37
538 539 1.002868 CTCCTGCAAGTGAGGTGGG 60.003 63.158 0.00 0.00 30.58 4.61
539 540 1.002868 CCTCCTGCAAGTGAGGTGG 60.003 63.158 15.26 6.96 42.76 4.61
540 541 0.036577 CTCCTCCTGCAAGTGAGGTG 60.037 60.000 20.24 16.03 45.78 4.00
541 542 1.197430 CCTCCTCCTGCAAGTGAGGT 61.197 60.000 20.24 0.00 45.78 3.85
543 544 1.078567 GCCTCCTCCTGCAAGTGAG 60.079 63.158 0.00 0.00 32.97 3.51
544 545 2.596851 GGCCTCCTCCTGCAAGTGA 61.597 63.158 0.00 0.00 0.00 3.41
546 547 1.927527 ATGGCCTCCTCCTGCAAGT 60.928 57.895 3.32 0.00 0.00 3.16
547 548 1.453379 CATGGCCTCCTCCTGCAAG 60.453 63.158 3.32 0.00 0.00 4.01
548 549 1.924939 TCATGGCCTCCTCCTGCAA 60.925 57.895 3.32 0.00 0.00 4.08
549 550 2.285592 TCATGGCCTCCTCCTGCA 60.286 61.111 3.32 0.00 0.00 4.41
550 551 2.191641 GTCATGGCCTCCTCCTGC 59.808 66.667 3.32 0.00 0.00 4.85
551 552 1.980784 CTGGTCATGGCCTCCTCCTG 61.981 65.000 19.09 2.34 0.00 3.86
553 554 2.914289 CTGGTCATGGCCTCCTCC 59.086 66.667 19.09 2.29 0.00 4.30
554 555 1.919600 AAGCTGGTCATGGCCTCCTC 61.920 60.000 19.09 3.82 0.00 3.71
556 557 0.475906 ATAAGCTGGTCATGGCCTCC 59.524 55.000 19.09 8.32 0.00 4.30
557 558 3.406764 CTTATAAGCTGGTCATGGCCTC 58.593 50.000 19.09 9.47 0.00 4.70
559 560 2.508526 CCTTATAAGCTGGTCATGGCC 58.491 52.381 10.20 10.20 0.00 5.36
560 561 2.106511 TCCCTTATAAGCTGGTCATGGC 59.893 50.000 6.99 0.00 0.00 4.40
561 562 3.648067 TCTCCCTTATAAGCTGGTCATGG 59.352 47.826 6.99 0.81 0.00 3.66
562 563 4.963318 TCTCCCTTATAAGCTGGTCATG 57.037 45.455 6.99 0.00 0.00 3.07
563 564 5.975988 TTTCTCCCTTATAAGCTGGTCAT 57.024 39.130 6.99 0.00 0.00 3.06
564 565 5.975988 ATTTCTCCCTTATAAGCTGGTCA 57.024 39.130 6.99 0.00 0.00 4.02
565 566 7.057264 AGAAATTTCTCCCTTATAAGCTGGTC 58.943 38.462 15.11 0.00 29.94 4.02
567 568 7.013750 GGAAGAAATTTCTCCCTTATAAGCTGG 59.986 40.741 20.71 4.34 36.28 4.85
568 569 7.777440 AGGAAGAAATTTCTCCCTTATAAGCTG 59.223 37.037 19.58 0.78 36.28 4.24
569 570 7.877433 AGGAAGAAATTTCTCCCTTATAAGCT 58.123 34.615 19.58 0.37 36.28 3.74
570 571 7.775561 TGAGGAAGAAATTTCTCCCTTATAAGC 59.224 37.037 25.07 12.82 36.28 3.09
571 572 9.114952 GTGAGGAAGAAATTTCTCCCTTATAAG 57.885 37.037 25.07 5.43 36.28 1.73
572 573 8.836735 AGTGAGGAAGAAATTTCTCCCTTATAA 58.163 33.333 25.07 10.38 36.28 0.98
574 575 7.277405 AGTGAGGAAGAAATTTCTCCCTTAT 57.723 36.000 25.07 12.54 36.28 1.73
575 576 6.704056 AGTGAGGAAGAAATTTCTCCCTTA 57.296 37.500 25.07 19.15 36.28 2.69
576 577 5.590976 AGTGAGGAAGAAATTTCTCCCTT 57.409 39.130 25.07 14.38 36.28 3.95
578 579 5.316987 TGAAGTGAGGAAGAAATTTCTCCC 58.683 41.667 20.71 18.05 36.28 4.30
579 580 6.000840 ACTGAAGTGAGGAAGAAATTTCTCC 58.999 40.000 20.71 20.52 36.28 3.71
582 583 5.106908 CGGACTGAAGTGAGGAAGAAATTTC 60.107 44.000 10.33 10.33 0.00 2.17
584 585 4.319177 CGGACTGAAGTGAGGAAGAAATT 58.681 43.478 0.00 0.00 0.00 1.82
585 586 3.307059 CCGGACTGAAGTGAGGAAGAAAT 60.307 47.826 0.00 0.00 0.00 2.17
589 590 0.247736 CCCGGACTGAAGTGAGGAAG 59.752 60.000 0.73 0.00 0.00 3.46
590 591 1.827399 GCCCGGACTGAAGTGAGGAA 61.827 60.000 0.73 0.00 0.00 3.36
591 592 2.283529 GCCCGGACTGAAGTGAGGA 61.284 63.158 0.73 0.00 0.00 3.71
592 593 1.831652 AAGCCCGGACTGAAGTGAGG 61.832 60.000 0.73 0.00 0.00 3.86
593 594 0.035458 AAAGCCCGGACTGAAGTGAG 59.965 55.000 0.73 0.00 0.00 3.51
594 595 0.472471 AAAAGCCCGGACTGAAGTGA 59.528 50.000 0.73 0.00 0.00 3.41
595 596 0.593128 CAAAAGCCCGGACTGAAGTG 59.407 55.000 0.73 0.00 0.00 3.16
596 597 0.537371 CCAAAAGCCCGGACTGAAGT 60.537 55.000 0.73 0.00 0.00 3.01
598 599 1.228429 CCCAAAAGCCCGGACTGAA 60.228 57.895 0.73 0.00 0.00 3.02
599 600 1.497309 ATCCCAAAAGCCCGGACTGA 61.497 55.000 0.73 0.00 0.00 3.41
600 601 1.000896 ATCCCAAAAGCCCGGACTG 60.001 57.895 0.73 0.00 0.00 3.51
602 603 2.052104 CCATCCCAAAAGCCCGGAC 61.052 63.158 0.73 0.00 0.00 4.79
605 606 0.461135 CATTCCATCCCAAAAGCCCG 59.539 55.000 0.00 0.00 0.00 6.13
606 607 0.832626 CCATTCCATCCCAAAAGCCC 59.167 55.000 0.00 0.00 0.00 5.19
607 608 1.482182 GTCCATTCCATCCCAAAAGCC 59.518 52.381 0.00 0.00 0.00 4.35
608 609 2.428530 GAGTCCATTCCATCCCAAAAGC 59.571 50.000 0.00 0.00 0.00 3.51
609 610 3.950395 GAGAGTCCATTCCATCCCAAAAG 59.050 47.826 0.00 0.00 0.00 2.27
611 612 3.054139 CAGAGAGTCCATTCCATCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
612 613 2.507058 CAGAGAGTCCATTCCATCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
613 614 2.121948 CAGAGAGTCCATTCCATCCCA 58.878 52.381 0.00 0.00 0.00 4.37
614 615 1.202746 GCAGAGAGTCCATTCCATCCC 60.203 57.143 0.00 0.00 0.00 3.85
616 617 2.433604 TCAGCAGAGAGTCCATTCCATC 59.566 50.000 0.00 0.00 0.00 3.51
619 620 3.204526 CATTCAGCAGAGAGTCCATTCC 58.795 50.000 0.00 0.00 0.00 3.01
620 621 3.871485 ACATTCAGCAGAGAGTCCATTC 58.129 45.455 0.00 0.00 0.00 2.67
621 622 3.996921 ACATTCAGCAGAGAGTCCATT 57.003 42.857 0.00 0.00 0.00 3.16
622 623 3.387374 CCTACATTCAGCAGAGAGTCCAT 59.613 47.826 0.00 0.00 0.00 3.41
623 624 2.762887 CCTACATTCAGCAGAGAGTCCA 59.237 50.000 0.00 0.00 0.00 4.02
624 625 2.102252 CCCTACATTCAGCAGAGAGTCC 59.898 54.545 0.00 0.00 0.00 3.85
625 626 2.482839 GCCCTACATTCAGCAGAGAGTC 60.483 54.545 0.00 0.00 0.00 3.36
626 627 1.484240 GCCCTACATTCAGCAGAGAGT 59.516 52.381 0.00 0.00 0.00 3.24
627 628 1.202627 GGCCCTACATTCAGCAGAGAG 60.203 57.143 0.00 0.00 0.00 3.20
629 630 0.543277 TGGCCCTACATTCAGCAGAG 59.457 55.000 0.00 0.00 0.00 3.35
632 633 0.625316 ACATGGCCCTACATTCAGCA 59.375 50.000 0.00 0.00 0.00 4.41
633 634 1.027357 CACATGGCCCTACATTCAGC 58.973 55.000 0.00 0.00 0.00 4.26
634 635 1.027357 GCACATGGCCCTACATTCAG 58.973 55.000 0.00 0.00 36.11 3.02
636 637 2.024918 CGCACATGGCCCTACATTC 58.975 57.895 0.00 0.00 40.31 2.67
639 640 1.977293 TATGCGCACATGGCCCTACA 61.977 55.000 14.90 0.00 40.31 2.74
641 642 0.106967 TTTATGCGCACATGGCCCTA 60.107 50.000 14.90 0.00 40.31 3.53
644 645 1.586042 CGTTTATGCGCACATGGCC 60.586 57.895 14.90 0.00 40.31 5.36
645 646 0.861450 GACGTTTATGCGCACATGGC 60.861 55.000 14.90 3.33 37.04 4.40
646 647 0.248054 GGACGTTTATGCGCACATGG 60.248 55.000 14.90 3.69 37.04 3.66
647 648 0.445829 TGGACGTTTATGCGCACATG 59.554 50.000 14.90 8.08 37.04 3.21
648 649 0.726827 CTGGACGTTTATGCGCACAT 59.273 50.000 14.90 0.00 40.49 3.21
650 651 0.793861 TTCTGGACGTTTATGCGCAC 59.206 50.000 14.90 0.00 34.88 5.34
652 653 1.396996 ACATTCTGGACGTTTATGCGC 59.603 47.619 0.00 0.00 34.88 6.09
654 655 4.630069 ACAGTACATTCTGGACGTTTATGC 59.370 41.667 0.00 0.00 36.00 3.14
655 656 7.033791 ACTACAGTACATTCTGGACGTTTATG 58.966 38.462 0.00 0.00 36.00 1.90
656 657 7.166691 ACTACAGTACATTCTGGACGTTTAT 57.833 36.000 0.00 0.00 36.00 1.40
657 658 6.579666 ACTACAGTACATTCTGGACGTTTA 57.420 37.500 0.00 0.00 36.00 2.01
658 659 5.464030 ACTACAGTACATTCTGGACGTTT 57.536 39.130 0.00 0.00 36.00 3.60
660 661 5.243283 AGAAACTACAGTACATTCTGGACGT 59.757 40.000 0.00 0.00 36.00 4.34
661 662 5.710984 AGAAACTACAGTACATTCTGGACG 58.289 41.667 0.00 0.00 36.00 4.79
662 663 8.305317 ACTAAGAAACTACAGTACATTCTGGAC 58.695 37.037 0.00 0.00 39.48 4.02
664 665 8.088981 ACACTAAGAAACTACAGTACATTCTGG 58.911 37.037 0.00 4.36 39.48 3.86
665 666 9.477484 AACACTAAGAAACTACAGTACATTCTG 57.523 33.333 0.00 0.00 40.80 3.02
668 669 9.826574 TGAAACACTAAGAAACTACAGTACATT 57.173 29.630 0.00 0.00 0.00 2.71
669 670 9.257651 GTGAAACACTAAGAAACTACAGTACAT 57.742 33.333 0.00 0.00 36.32 2.29
670 671 8.252417 TGTGAAACACTAAGAAACTACAGTACA 58.748 33.333 0.00 0.00 45.67 2.90
671 672 8.638685 TGTGAAACACTAAGAAACTACAGTAC 57.361 34.615 0.00 0.00 45.67 2.73
673 674 6.761714 CCTGTGAAACACTAAGAAACTACAGT 59.238 38.462 0.00 0.00 45.67 3.55
674 675 6.292919 GCCTGTGAAACACTAAGAAACTACAG 60.293 42.308 0.00 0.00 45.67 2.74
675 676 5.526111 GCCTGTGAAACACTAAGAAACTACA 59.474 40.000 0.00 0.00 45.67 2.74
816 943 3.702045 GCTGTACAATACTCCCTCTGTCT 59.298 47.826 0.00 0.00 0.00 3.41
820 947 6.854578 AGTATAGCTGTACAATACTCCCTCT 58.145 40.000 21.04 0.00 32.28 3.69
847 976 5.009631 CACATGTAGGAAACCTGGATTCAA 58.990 41.667 17.12 3.45 34.61 2.69
878 1007 1.874872 CGGCCCGTTGAGACTTTAAAA 59.125 47.619 0.00 0.00 0.00 1.52
881 1010 1.375013 GCGGCCCGTTGAGACTTTA 60.375 57.895 4.45 0.00 0.00 1.85
887 1016 3.636313 TACGAAGCGGCCCGTTGAG 62.636 63.158 20.04 0.00 39.86 3.02
943 1072 2.744202 CAAATTTAGAGAGGTGCAGCGT 59.256 45.455 10.78 1.31 0.00 5.07
949 1078 2.017049 CGGGCCAAATTTAGAGAGGTG 58.983 52.381 4.39 0.00 0.00 4.00
950 1079 1.913419 TCGGGCCAAATTTAGAGAGGT 59.087 47.619 4.39 0.00 0.00 3.85
952 1081 3.268023 ACTCGGGCCAAATTTAGAGAG 57.732 47.619 4.39 0.61 0.00 3.20
953 1082 3.606687 GAACTCGGGCCAAATTTAGAGA 58.393 45.455 4.39 0.00 0.00 3.10
1130 1260 1.866925 CGGGAAAGACAAAGACGGC 59.133 57.895 0.00 0.00 0.00 5.68
1371 1503 0.774908 ATTCCTCGGACCCAACCAAA 59.225 50.000 0.00 0.00 0.00 3.28
1376 1508 2.305607 CCCCATTCCTCGGACCCAA 61.306 63.158 0.00 0.00 0.00 4.12
1563 1701 0.249398 ACATGCTGGTACGAGTTCCC 59.751 55.000 6.75 0.00 0.00 3.97
1653 1791 5.466728 TGAAAGCAAACTACAGTAGAAGCTG 59.533 40.000 14.94 6.60 41.92 4.24
1756 1899 5.886960 ATCAAGAAAATTCAGTTCCCTCG 57.113 39.130 0.00 0.00 0.00 4.63
1811 1954 8.425577 AAAAGTATCACACAGATGTACATAGC 57.574 34.615 8.71 0.00 36.72 2.97
1857 2012 5.454613 CCACCAGATTAGCACCACACATATA 60.455 44.000 0.00 0.00 0.00 0.86
1875 2030 2.756760 CCACATCCAGAAAATCCACCAG 59.243 50.000 0.00 0.00 0.00 4.00
1950 2105 3.864686 CTCCCAAATGACGCGCCG 61.865 66.667 5.73 0.00 0.00 6.46
2010 2165 9.790344 TTTGGATCAAAACCAATTATCAATGTT 57.210 25.926 0.00 0.00 45.09 2.71
2019 2174 7.123355 TGAAGACTTTGGATCAAAACCAATT 57.877 32.000 0.00 0.00 45.09 2.32
2022 2177 5.656416 AGTTGAAGACTTTGGATCAAAACCA 59.344 36.000 0.00 0.00 33.92 3.67
2155 2310 0.447801 CACCGCATACTGAACAAGCC 59.552 55.000 0.00 0.00 0.00 4.35
2393 2548 6.017687 CACAAGTTACCTACCTAACACAAACC 60.018 42.308 0.00 0.00 0.00 3.27
2632 2806 9.630098 GGTCGTATCGTTTAATGGAATAGAATA 57.370 33.333 0.00 0.00 0.00 1.75
2633 2807 8.145767 TGGTCGTATCGTTTAATGGAATAGAAT 58.854 33.333 0.00 0.00 0.00 2.40
2674 2861 4.745649 ACTTTATGCTCAGTTCGGTAGAC 58.254 43.478 0.00 0.00 0.00 2.59
2691 2878 0.606604 GGACGCTGACCCTGACTTTA 59.393 55.000 0.00 0.00 0.00 1.85
2705 2892 1.401800 CCAAACCAAATAACCGGACGC 60.402 52.381 9.46 0.00 0.00 5.19
2713 2900 4.276431 GGTCACGAGTTCCAAACCAAATAA 59.724 41.667 0.00 0.00 0.00 1.40
2757 2944 1.246056 TAAGGCTGTAGTCGCGGTGT 61.246 55.000 6.13 0.00 0.00 4.16
2765 2952 4.881850 GGTGCATTGTTATAAGGCTGTAGT 59.118 41.667 0.00 0.00 0.00 2.73
2771 2958 4.981806 TGAAGGTGCATTGTTATAAGGC 57.018 40.909 0.00 0.00 0.00 4.35
2953 3141 7.395489 AGCAACCAGAGATTTCTATGAATTGTT 59.605 33.333 14.85 9.78 37.37 2.83
3367 3556 6.212388 TGATGTGCCTACAATTTAATTTGGGT 59.788 34.615 13.17 0.00 40.84 4.51
4233 4445 5.934935 TCCTGAAACGTCTTATGAAAACC 57.065 39.130 0.00 0.00 0.00 3.27
4483 4695 5.362430 GCATGGATTTTTGGTATAACTGGGA 59.638 40.000 0.00 0.00 0.00 4.37
4537 4749 2.438868 GGAACACAAATTCCAGTGGC 57.561 50.000 3.51 0.00 46.49 5.01
4671 4885 0.321387 TAGAGTCGTCGAGGTGCACT 60.321 55.000 17.98 2.27 0.00 4.40
4684 4898 2.825532 GGATCTCTGGCCAGATAGAGTC 59.174 54.545 35.11 24.49 40.92 3.36
4685 4899 2.450500 AGGATCTCTGGCCAGATAGAGT 59.549 50.000 35.11 18.71 40.92 3.24
4857 5071 1.211969 GTCGTAGCGCCAAGACAGA 59.788 57.895 15.94 4.08 34.09 3.41
4858 5072 1.805945 GGTCGTAGCGCCAAGACAG 60.806 63.158 21.19 5.01 35.49 3.51
4870 5084 2.286872 GATCCGTGAAGAGAGGTCGTA 58.713 52.381 0.00 0.00 0.00 3.43
4873 5087 0.248702 GCGATCCGTGAAGAGAGGTC 60.249 60.000 0.00 0.00 0.00 3.85
4908 5122 2.504367 CCAAGGACCAGTGTTACAAGG 58.496 52.381 3.91 3.91 0.00 3.61
4930 5144 7.331934 CACCTGTATATATATTGCTCAAAGCGT 59.668 37.037 0.00 0.00 46.26 5.07
4991 5205 9.979270 CACAGATCTAGTGACAATGTAATTTTC 57.021 33.333 15.93 0.00 39.30 2.29
4996 5210 6.153510 AGCTCACAGATCTAGTGACAATGTAA 59.846 38.462 18.29 3.05 40.80 2.41
5057 5276 7.781324 AGAGAAAATTGGGAGCTTAAATCAA 57.219 32.000 0.00 0.00 0.00 2.57
5126 5345 6.599638 AGCCAAGTAGACCAATAGTGAAAATC 59.400 38.462 0.00 0.00 0.00 2.17
5525 5748 3.127030 GGTTTCAGTTAAGGAGGCATTCG 59.873 47.826 0.00 0.00 0.00 3.34
5675 5898 3.244078 CCCAGCCCTAAACCAAGAAAAAC 60.244 47.826 0.00 0.00 0.00 2.43
5687 5910 0.546122 CAGTACATGCCCAGCCCTAA 59.454 55.000 0.00 0.00 0.00 2.69
5779 6002 4.096681 TGATCAACCTCCTGACTACATGT 58.903 43.478 2.69 2.69 0.00 3.21
6051 6285 4.015764 TGAACATTAAGCCTGCTTGCATA 58.984 39.130 14.42 0.00 37.47 3.14
6068 6302 2.738314 CTCGAATGACTGCACATGAACA 59.262 45.455 0.00 0.00 0.00 3.18
6090 6324 5.417580 TCTCCAATTTAATTCCGGTTCCTTG 59.582 40.000 0.00 0.00 0.00 3.61
6111 6345 5.601662 TGAACCACCTATGAATCGAATCTC 58.398 41.667 1.55 0.00 0.00 2.75
6186 6420 2.046892 CCAAGCGGTGACCTCCAG 60.047 66.667 0.00 0.00 0.00 3.86
6187 6421 3.636231 CCCAAGCGGTGACCTCCA 61.636 66.667 0.00 0.00 0.00 3.86
6188 6422 4.410400 CCCCAAGCGGTGACCTCC 62.410 72.222 0.00 0.00 0.00 4.30
6216 6450 1.165270 GTGCGCTCCCAACATTTACT 58.835 50.000 9.73 0.00 0.00 2.24
6275 6509 2.213499 GAGATAGGCACGGTGAATTGG 58.787 52.381 13.29 0.00 0.00 3.16
6349 6583 6.367983 ACAAAATGCACATCTAGGGTGATAT 58.632 36.000 16.51 8.77 38.54 1.63
6416 6650 5.477607 TCGATCGTTTGATAATGGGGTAT 57.522 39.130 15.94 0.00 34.09 2.73
6419 6653 3.120199 GCATCGATCGTTTGATAATGGGG 60.120 47.826 15.94 0.00 34.09 4.96
6427 6661 0.721154 GCTGTGCATCGATCGTTTGA 59.279 50.000 15.94 0.00 0.00 2.69
6470 6725 3.238108 AGAAACGTAGAGCAGGACATG 57.762 47.619 0.00 0.00 0.00 3.21
6478 6733 6.073765 TGTTGAATTCTGAAGAAACGTAGAGC 60.074 38.462 7.05 0.00 37.61 4.09
6480 6735 7.962964 ATGTTGAATTCTGAAGAAACGTAGA 57.037 32.000 7.05 0.00 37.61 2.59
6569 6839 0.598419 GCCAAGTGTTTTCAGCAGCC 60.598 55.000 0.00 0.00 0.00 4.85
6689 6959 5.050490 AGCGCAACCATTCTACTAATAGTG 58.950 41.667 11.47 0.00 0.00 2.74
6694 6964 2.418628 GCAAGCGCAACCATTCTACTAA 59.581 45.455 11.47 0.00 38.36 2.24
6714 6984 3.428589 GCTGAAATGTTCTGGAAGGATGC 60.429 47.826 0.00 0.00 0.00 3.91
6757 7027 9.057089 CCAAAATAAGTGTCTCAACTTTCTACT 57.943 33.333 0.00 0.00 40.77 2.57
6758 7028 8.837389 ACCAAAATAAGTGTCTCAACTTTCTAC 58.163 33.333 0.00 0.00 40.77 2.59
6759 7029 8.974060 ACCAAAATAAGTGTCTCAACTTTCTA 57.026 30.769 0.00 0.00 40.77 2.10
6760 7030 7.881775 ACCAAAATAAGTGTCTCAACTTTCT 57.118 32.000 0.00 0.00 40.77 2.52
6761 7031 7.797123 CGTACCAAAATAAGTGTCTCAACTTTC 59.203 37.037 0.00 0.00 40.77 2.62
6762 7032 7.255001 CCGTACCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
6763 7033 6.204108 CCGTACCAAAATAAGTGTCTCAACTT 59.796 38.462 0.00 0.00 42.89 2.66
6764 7034 5.699458 CCGTACCAAAATAAGTGTCTCAACT 59.301 40.000 0.00 0.00 0.00 3.16
6765 7035 5.697633 TCCGTACCAAAATAAGTGTCTCAAC 59.302 40.000 0.00 0.00 0.00 3.18
6766 7036 5.856156 TCCGTACCAAAATAAGTGTCTCAA 58.144 37.500 0.00 0.00 0.00 3.02
6767 7037 5.471556 TCCGTACCAAAATAAGTGTCTCA 57.528 39.130 0.00 0.00 0.00 3.27
6768 7038 4.868734 CCTCCGTACCAAAATAAGTGTCTC 59.131 45.833 0.00 0.00 0.00 3.36
6769 7039 4.323257 CCCTCCGTACCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
6770 7040 3.937079 CCCTCCGTACCAAAATAAGTGTC 59.063 47.826 0.00 0.00 0.00 3.67
6771 7041 3.583966 TCCCTCCGTACCAAAATAAGTGT 59.416 43.478 0.00 0.00 0.00 3.55
6772 7042 4.189231 CTCCCTCCGTACCAAAATAAGTG 58.811 47.826 0.00 0.00 0.00 3.16
6773 7043 3.842436 ACTCCCTCCGTACCAAAATAAGT 59.158 43.478 0.00 0.00 0.00 2.24
6774 7044 4.482952 ACTCCCTCCGTACCAAAATAAG 57.517 45.455 0.00 0.00 0.00 1.73
6775 7045 6.564557 ATTACTCCCTCCGTACCAAAATAA 57.435 37.500 0.00 0.00 0.00 1.40
6776 7046 7.673641 TTATTACTCCCTCCGTACCAAAATA 57.326 36.000 0.00 0.00 0.00 1.40
6777 7047 6.564557 TTATTACTCCCTCCGTACCAAAAT 57.435 37.500 0.00 0.00 0.00 1.82
6778 7048 6.013466 ACTTTATTACTCCCTCCGTACCAAAA 60.013 38.462 0.00 0.00 0.00 2.44
6779 7049 5.484998 ACTTTATTACTCCCTCCGTACCAAA 59.515 40.000 0.00 0.00 0.00 3.28
6780 7050 5.025453 ACTTTATTACTCCCTCCGTACCAA 58.975 41.667 0.00 0.00 0.00 3.67
6781 7051 4.613437 ACTTTATTACTCCCTCCGTACCA 58.387 43.478 0.00 0.00 0.00 3.25
6782 7052 6.322456 AGTTACTTTATTACTCCCTCCGTACC 59.678 42.308 0.00 0.00 0.00 3.34
6783 7053 7.340122 AGTTACTTTATTACTCCCTCCGTAC 57.660 40.000 0.00 0.00 0.00 3.67
6784 7054 8.275040 AGTAGTTACTTTATTACTCCCTCCGTA 58.725 37.037 0.00 0.00 31.13 4.02
6785 7055 7.067981 CAGTAGTTACTTTATTACTCCCTCCGT 59.932 40.741 0.00 0.00 33.46 4.69
6786 7056 7.424001 CAGTAGTTACTTTATTACTCCCTCCG 58.576 42.308 0.00 0.00 33.46 4.63
6787 7057 7.208777 GCAGTAGTTACTTTATTACTCCCTCC 58.791 42.308 0.00 0.00 33.46 4.30
6788 7058 7.208777 GGCAGTAGTTACTTTATTACTCCCTC 58.791 42.308 0.00 0.00 33.46 4.30
6789 7059 6.183360 CGGCAGTAGTTACTTTATTACTCCCT 60.183 42.308 0.00 0.00 33.46 4.20
6790 7060 5.981915 CGGCAGTAGTTACTTTATTACTCCC 59.018 44.000 0.00 0.00 33.46 4.30
6791 7061 5.461407 GCGGCAGTAGTTACTTTATTACTCC 59.539 44.000 0.00 0.00 33.46 3.85
6792 7062 5.461407 GGCGGCAGTAGTTACTTTATTACTC 59.539 44.000 3.07 0.00 33.46 2.59
6793 7063 5.354767 GGCGGCAGTAGTTACTTTATTACT 58.645 41.667 3.07 0.00 33.46 2.24
6794 7064 4.207841 CGGCGGCAGTAGTTACTTTATTAC 59.792 45.833 10.53 0.00 33.46 1.89
6854 7124 4.221262 TCCTTTGAGAATGCAAATTGAGGG 59.779 41.667 0.00 0.00 37.16 4.30
6981 7251 5.665916 ATGGCAATACTTTTCAGAAAGGG 57.334 39.130 9.65 3.73 45.24 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.