Multiple sequence alignment - TraesCS5D01G190900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G190900 chr5D 100.000 4998 0 0 1 4998 293169576 293164579 0.000000e+00 9230.0
1 TraesCS5D01G190900 chr5D 89.841 315 21 5 589 892 281024468 281024782 1.300000e-105 394.0
2 TraesCS5D01G190900 chr5D 94.805 77 4 0 2028 2104 556285495 556285419 2.440000e-23 121.0
3 TraesCS5D01G190900 chr5D 79.268 164 31 3 364 525 119913514 119913676 1.470000e-20 111.0
4 TraesCS5D01G190900 chr5D 96.078 51 1 1 2975 3024 293166552 293166502 1.150000e-11 82.4
5 TraesCS5D01G190900 chr5D 96.078 51 1 1 3025 3075 293166602 293166553 1.150000e-11 82.4
6 TraesCS5D01G190900 chr5A 93.110 3556 152 41 1472 4994 386167218 386163723 0.000000e+00 5123.0
7 TraesCS5D01G190900 chr5A 93.658 473 17 6 936 1398 386167684 386167215 0.000000e+00 695.0
8 TraesCS5D01G190900 chr5A 88.050 318 29 6 595 904 640692058 640691742 7.900000e-98 368.0
9 TraesCS5D01G190900 chr5A 81.818 396 50 9 205 590 386168355 386167972 3.760000e-81 313.0
10 TraesCS5D01G190900 chr5A 98.039 51 0 1 3025 3075 386165737 386165688 2.480000e-13 87.9
11 TraesCS5D01G190900 chr5A 96.078 51 1 1 2975 3024 386165687 386165637 1.150000e-11 82.4
12 TraesCS5D01G190900 chr5B 95.403 2110 45 8 924 3024 334688256 334686190 0.000000e+00 3312.0
13 TraesCS5D01G190900 chr5B 93.138 1501 59 17 3025 4520 334686239 334684778 0.000000e+00 2161.0
14 TraesCS5D01G190900 chr5B 88.589 333 17 8 4665 4997 334684327 334684016 7.850000e-103 385.0
15 TraesCS5D01G190900 chr5B 88.000 150 18 0 204 353 221201634 221201783 1.430000e-40 178.0
16 TraesCS5D01G190900 chr5B 82.143 168 25 5 362 527 641761113 641760949 6.750000e-29 139.0
17 TraesCS5D01G190900 chr6D 84.076 628 62 14 3247 3868 413020805 413021400 5.610000e-159 571.0
18 TraesCS5D01G190900 chr6D 83.280 628 60 15 3247 3868 25490498 25491086 2.050000e-148 536.0
19 TraesCS5D01G190900 chr6D 95.775 213 9 0 1 213 387025039 387024827 1.330000e-90 344.0
20 TraesCS5D01G190900 chr6D 94.977 219 11 0 1 219 392196674 392196456 1.330000e-90 344.0
21 TraesCS5D01G190900 chr6D 94.521 219 12 0 1 219 131915886 131915668 6.200000e-89 339.0
22 TraesCS5D01G190900 chr6D 94.521 219 12 0 1 219 294328398 294328616 6.200000e-89 339.0
23 TraesCS5D01G190900 chr6D 95.305 213 10 0 1 213 375870887 375871099 6.200000e-89 339.0
24 TraesCS5D01G190900 chr6D 88.732 142 13 3 215 353 472223387 472223246 2.390000e-38 171.0
25 TraesCS5D01G190900 chr6D 88.235 102 5 5 4284 4385 168252910 168252816 1.140000e-21 115.0
26 TraesCS5D01G190900 chr6D 88.235 102 5 4 4284 4385 168253780 168253874 1.140000e-21 115.0
27 TraesCS5D01G190900 chr6D 88.235 102 5 4 4284 4385 429818610 429818704 1.140000e-21 115.0
28 TraesCS5D01G190900 chr4D 84.076 628 62 14 3247 3868 506091437 506092032 5.610000e-159 571.0
29 TraesCS5D01G190900 chr4D 94.545 220 10 2 1 219 418272202 418271984 6.200000e-89 339.0
30 TraesCS5D01G190900 chr4D 90.647 139 11 2 215 353 470200944 470200808 3.070000e-42 183.0
31 TraesCS5D01G190900 chr4D 88.333 120 6 5 239 353 353047190 353047306 2.430000e-28 137.0
32 TraesCS5D01G190900 chr4D 81.098 164 28 2 364 526 54639126 54638965 1.460000e-25 128.0
33 TraesCS5D01G190900 chr4D 94.805 77 4 0 2028 2104 347173362 347173286 2.440000e-23 121.0
34 TraesCS5D01G190900 chr7A 83.070 632 66 16 3247 3871 32951441 32950844 2.050000e-148 536.0
35 TraesCS5D01G190900 chr7A 89.180 305 26 3 595 892 138976986 138976682 1.700000e-99 374.0
36 TraesCS5D01G190900 chr7A 88.852 305 27 2 595 892 48106742 48106438 7.900000e-98 368.0
37 TraesCS5D01G190900 chr7A 94.805 77 4 0 2028 2104 397427008 397426932 2.440000e-23 121.0
38 TraesCS5D01G190900 chr3A 82.830 629 68 16 3247 3868 479685859 479686454 1.230000e-145 527.0
39 TraesCS5D01G190900 chr3A 88.924 316 24 6 585 893 18824516 18824205 3.650000e-101 379.0
40 TraesCS5D01G190900 chr3A 85.000 140 20 1 205 343 681029302 681029441 1.880000e-29 141.0
41 TraesCS5D01G190900 chr3A 80.982 163 29 2 364 525 614565631 614565792 1.460000e-25 128.0
42 TraesCS5D01G190900 chr3A 79.268 164 31 3 364 525 510679104 510679266 1.470000e-20 111.0
43 TraesCS5D01G190900 chr6A 82.671 629 69 16 3247 3868 594275500 594276095 5.730000e-144 521.0
44 TraesCS5D01G190900 chr6A 94.977 219 11 0 1 219 301965133 301964915 1.330000e-90 344.0
45 TraesCS5D01G190900 chr6A 79.191 173 29 7 364 532 188279350 188279519 4.090000e-21 113.0
46 TraesCS5D01G190900 chr2A 81.699 612 72 21 2042 2616 16267879 16268487 1.630000e-129 473.0
47 TraesCS5D01G190900 chr2A 89.701 301 23 3 595 887 475022145 475021845 1.310000e-100 377.0
48 TraesCS5D01G190900 chr2A 81.395 172 28 4 364 532 17755205 17755035 2.430000e-28 137.0
49 TraesCS5D01G190900 chr4A 83.080 526 51 20 3247 3762 648976527 648977024 1.280000e-120 444.0
50 TraesCS5D01G190900 chr4A 89.508 305 25 2 595 892 153665651 153665347 3.650000e-101 379.0
51 TraesCS5D01G190900 chr2D 80.619 614 76 19 2042 2616 13981101 13980492 7.680000e-118 435.0
52 TraesCS5D01G190900 chr2D 89.726 146 15 0 205 350 474642451 474642596 2.380000e-43 187.0
53 TraesCS5D01G190900 chr2D 88.350 103 5 4 4284 4385 322927253 322927157 3.160000e-22 117.0
54 TraesCS5D01G190900 chrUn 80.000 625 70 29 2042 2616 2058397 2057778 1.290000e-110 411.0
55 TraesCS5D01G190900 chrUn 88.235 102 5 4 4284 4385 93410776 93410682 1.140000e-21 115.0
56 TraesCS5D01G190900 chrUn 88.235 102 5 4 4284 4385 396206506 396206412 1.140000e-21 115.0
57 TraesCS5D01G190900 chr1D 89.542 306 24 7 595 892 52692471 52692166 1.020000e-101 381.0
58 TraesCS5D01G190900 chr1D 92.208 77 6 0 2028 2104 156007317 156007241 5.290000e-20 110.0
59 TraesCS5D01G190900 chr7D 89.226 297 24 3 603 892 18813232 18812937 1.020000e-96 364.0
60 TraesCS5D01G190900 chr7D 90.604 149 14 0 205 353 46130478 46130626 1.100000e-46 198.0
61 TraesCS5D01G190900 chr7D 82.209 163 28 1 364 525 564070811 564070973 6.750000e-29 139.0
62 TraesCS5D01G190900 chr7D 94.805 77 4 0 2028 2104 435181372 435181448 2.440000e-23 121.0
63 TraesCS5D01G190900 chr7D 94.805 77 4 0 2028 2104 577331256 577331180 2.440000e-23 121.0
64 TraesCS5D01G190900 chr7D 93.506 77 5 0 2028 2104 65765620 65765544 1.140000e-21 115.0
65 TraesCS5D01G190900 chr6B 95.775 213 9 0 1 213 266934879 266935091 1.330000e-90 344.0
66 TraesCS5D01G190900 chr6B 95.775 213 9 0 1 213 560585349 560585561 1.330000e-90 344.0
67 TraesCS5D01G190900 chr4B 85.235 149 22 0 205 353 645292812 645292664 2.410000e-33 154.0
68 TraesCS5D01G190900 chr7B 86.525 141 15 4 207 345 576678637 576678775 8.670000e-33 152.0
69 TraesCS5D01G190900 chr3D 94.805 77 4 0 2028 2104 584380482 584380406 2.440000e-23 121.0
70 TraesCS5D01G190900 chr3B 94.805 77 4 0 2028 2104 290617137 290617213 2.440000e-23 121.0
71 TraesCS5D01G190900 chr1A 88.235 102 5 4 4284 4385 554511110 554511204 1.140000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G190900 chr5D 293164579 293169576 4997 True 3131.600000 9230 97.385333 1 4998 3 chr5D.!!$R2 4997
1 TraesCS5D01G190900 chr5A 386163723 386168355 4632 True 1260.260000 5123 92.540600 205 4994 5 chr5A.!!$R2 4789
2 TraesCS5D01G190900 chr5B 334684016 334688256 4240 True 1952.666667 3312 92.376667 924 4997 3 chr5B.!!$R2 4073
3 TraesCS5D01G190900 chr6D 413020805 413021400 595 False 571.000000 571 84.076000 3247 3868 1 chr6D.!!$F5 621
4 TraesCS5D01G190900 chr6D 25490498 25491086 588 False 536.000000 536 83.280000 3247 3868 1 chr6D.!!$F1 621
5 TraesCS5D01G190900 chr4D 506091437 506092032 595 False 571.000000 571 84.076000 3247 3868 1 chr4D.!!$F2 621
6 TraesCS5D01G190900 chr7A 32950844 32951441 597 True 536.000000 536 83.070000 3247 3871 1 chr7A.!!$R1 624
7 TraesCS5D01G190900 chr3A 479685859 479686454 595 False 527.000000 527 82.830000 3247 3868 1 chr3A.!!$F1 621
8 TraesCS5D01G190900 chr6A 594275500 594276095 595 False 521.000000 521 82.671000 3247 3868 1 chr6A.!!$F2 621
9 TraesCS5D01G190900 chr2A 16267879 16268487 608 False 473.000000 473 81.699000 2042 2616 1 chr2A.!!$F1 574
10 TraesCS5D01G190900 chr2D 13980492 13981101 609 True 435.000000 435 80.619000 2042 2616 1 chr2D.!!$R1 574
11 TraesCS5D01G190900 chrUn 2057778 2058397 619 True 411.000000 411 80.000000 2042 2616 1 chrUn.!!$R1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.103208 CTCACTATTCGCCTTCCGCT 59.897 55.0 0.00 0.0 36.73 5.52 F
212 213 0.535335 TCACTATTCGCCTTCCGCTT 59.465 50.0 0.00 0.0 36.73 4.68 F
396 397 0.603065 GGGTCCACCAGTTTTCATGC 59.397 55.0 0.00 0.0 39.85 4.06 F
545 555 0.605589 CAAGCCAAGGAGTCTCGAGT 59.394 55.0 13.13 0.0 0.00 4.18 F
902 912 0.618981 AGGAGGCCTAGGTTTTTCGG 59.381 55.0 4.42 0.0 28.47 4.30 F
1161 1399 0.821711 CCTCTCTCCTTCCGCGATCT 60.822 60.0 8.23 0.0 0.00 2.75 F
3142 3451 0.821711 TCTGGTTTCCCCGTTGCAAG 60.822 55.0 0.00 0.0 35.15 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 1618 0.465642 GTAATCTCCCCTTTGCCCCG 60.466 60.000 0.00 0.00 0.00 5.73 R
1725 1979 1.825090 CCTTTGCTACTGCCATGACA 58.175 50.000 0.00 0.00 38.71 3.58 R
2147 2414 3.670359 GCATTGCAACATTTACTCAGCGA 60.670 43.478 0.00 0.00 0.00 4.93 R
2528 2837 3.381272 CCTTCCTTGTGTTGTGTGTTGAT 59.619 43.478 0.00 0.00 0.00 2.57 R
2875 3184 4.854399 TCAAAAGGTGCAGTAAATGAACG 58.146 39.130 0.00 0.00 38.52 3.95 R
3145 3454 1.301087 TGCCTTTGCATGCTGTTGC 60.301 52.632 20.33 16.24 44.23 4.17 R
4575 5164 0.034059 ACGCCAGTTCTTCCTCAGTG 59.966 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.908688 TTTTCAGGCCTTTCCAAAGC 57.091 45.000 0.00 0.00 37.29 3.51
20 21 1.786937 TTTCAGGCCTTTCCAAAGCA 58.213 45.000 0.00 0.00 37.29 3.91
21 22 1.331214 TTCAGGCCTTTCCAAAGCAG 58.669 50.000 0.00 0.00 37.29 4.24
22 23 0.185901 TCAGGCCTTTCCAAAGCAGT 59.814 50.000 0.00 0.00 37.29 4.40
23 24 1.043022 CAGGCCTTTCCAAAGCAGTT 58.957 50.000 0.00 0.00 37.29 3.16
24 25 1.000171 CAGGCCTTTCCAAAGCAGTTC 60.000 52.381 0.00 0.00 37.29 3.01
25 26 1.039856 GGCCTTTCCAAAGCAGTTCA 58.960 50.000 0.00 0.00 34.69 3.18
26 27 1.269778 GGCCTTTCCAAAGCAGTTCAC 60.270 52.381 0.00 0.00 34.69 3.18
27 28 1.683385 GCCTTTCCAAAGCAGTTCACT 59.317 47.619 0.00 0.00 34.69 3.41
28 29 2.544486 GCCTTTCCAAAGCAGTTCACTG 60.544 50.000 2.31 2.31 46.40 3.66
29 30 2.951642 CCTTTCCAAAGCAGTTCACTGA 59.048 45.455 11.29 0.00 45.37 3.41
30 31 3.571401 CCTTTCCAAAGCAGTTCACTGAT 59.429 43.478 11.29 0.82 45.59 2.90
31 32 4.543692 CTTTCCAAAGCAGTTCACTGATG 58.456 43.478 11.29 6.09 46.59 3.07
32 33 3.490439 TCCAAAGCAGTTCACTGATGA 57.510 42.857 11.29 0.00 46.59 2.92
33 34 4.025040 TCCAAAGCAGTTCACTGATGAT 57.975 40.909 11.29 0.00 46.59 2.45
34 35 4.401022 TCCAAAGCAGTTCACTGATGATT 58.599 39.130 11.29 0.00 46.59 2.57
35 36 5.559770 TCCAAAGCAGTTCACTGATGATTA 58.440 37.500 11.29 0.00 46.59 1.75
36 37 5.645067 TCCAAAGCAGTTCACTGATGATTAG 59.355 40.000 11.29 0.00 46.59 1.73
37 38 5.330295 CAAAGCAGTTCACTGATGATTAGC 58.670 41.667 11.29 0.00 46.59 3.09
38 39 4.484537 AGCAGTTCACTGATGATTAGCT 57.515 40.909 11.29 0.00 46.59 3.32
39 40 4.440880 AGCAGTTCACTGATGATTAGCTC 58.559 43.478 11.29 0.00 46.59 4.09
40 41 4.161942 AGCAGTTCACTGATGATTAGCTCT 59.838 41.667 11.29 0.00 46.59 4.09
41 42 4.507388 GCAGTTCACTGATGATTAGCTCTC 59.493 45.833 11.29 0.00 46.59 3.20
42 43 5.658468 CAGTTCACTGATGATTAGCTCTCA 58.342 41.667 0.14 0.00 46.59 3.27
43 44 6.104665 CAGTTCACTGATGATTAGCTCTCAA 58.895 40.000 0.14 0.00 46.59 3.02
44 45 6.592994 CAGTTCACTGATGATTAGCTCTCAAA 59.407 38.462 0.14 0.00 46.59 2.69
45 46 6.593382 AGTTCACTGATGATTAGCTCTCAAAC 59.407 38.462 0.00 0.00 33.85 2.93
46 47 5.423015 TCACTGATGATTAGCTCTCAAACC 58.577 41.667 0.00 0.00 0.00 3.27
47 48 5.046376 TCACTGATGATTAGCTCTCAAACCA 60.046 40.000 0.00 0.00 0.00 3.67
48 49 5.064452 CACTGATGATTAGCTCTCAAACCAC 59.936 44.000 0.00 0.00 0.00 4.16
49 50 4.517285 TGATGATTAGCTCTCAAACCACC 58.483 43.478 0.00 0.00 0.00 4.61
50 51 4.225942 TGATGATTAGCTCTCAAACCACCT 59.774 41.667 0.00 0.00 0.00 4.00
51 52 4.207891 TGATTAGCTCTCAAACCACCTC 57.792 45.455 0.00 0.00 0.00 3.85
52 53 3.840666 TGATTAGCTCTCAAACCACCTCT 59.159 43.478 0.00 0.00 0.00 3.69
53 54 5.023452 TGATTAGCTCTCAAACCACCTCTA 58.977 41.667 0.00 0.00 0.00 2.43
54 55 5.663106 TGATTAGCTCTCAAACCACCTCTAT 59.337 40.000 0.00 0.00 0.00 1.98
55 56 3.902881 AGCTCTCAAACCACCTCTATG 57.097 47.619 0.00 0.00 0.00 2.23
56 57 2.503356 AGCTCTCAAACCACCTCTATGG 59.497 50.000 0.00 0.00 46.10 2.74
66 67 2.045280 CCTCTATGGTCAGGAGGCG 58.955 63.158 8.88 0.00 39.87 5.52
67 68 0.468214 CCTCTATGGTCAGGAGGCGA 60.468 60.000 8.88 0.00 39.87 5.54
68 69 0.958091 CTCTATGGTCAGGAGGCGAG 59.042 60.000 0.00 0.00 0.00 5.03
69 70 0.551396 TCTATGGTCAGGAGGCGAGA 59.449 55.000 0.00 0.00 0.00 4.04
70 71 0.958091 CTATGGTCAGGAGGCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
71 72 0.551396 TATGGTCAGGAGGCGAGAGA 59.449 55.000 0.00 0.00 0.00 3.10
72 73 0.754957 ATGGTCAGGAGGCGAGAGAG 60.755 60.000 0.00 0.00 0.00 3.20
73 74 2.124693 GGTCAGGAGGCGAGAGAGG 61.125 68.421 0.00 0.00 0.00 3.69
74 75 1.379309 GTCAGGAGGCGAGAGAGGT 60.379 63.158 0.00 0.00 0.00 3.85
75 76 0.968393 GTCAGGAGGCGAGAGAGGTT 60.968 60.000 0.00 0.00 0.00 3.50
76 77 0.251832 TCAGGAGGCGAGAGAGGTTT 60.252 55.000 0.00 0.00 0.00 3.27
77 78 0.610687 CAGGAGGCGAGAGAGGTTTT 59.389 55.000 0.00 0.00 0.00 2.43
78 79 0.899019 AGGAGGCGAGAGAGGTTTTC 59.101 55.000 0.00 0.00 0.00 2.29
79 80 0.608640 GGAGGCGAGAGAGGTTTTCA 59.391 55.000 0.00 0.00 0.00 2.69
80 81 1.208293 GGAGGCGAGAGAGGTTTTCAT 59.792 52.381 0.00 0.00 0.00 2.57
81 82 2.431057 GGAGGCGAGAGAGGTTTTCATA 59.569 50.000 0.00 0.00 0.00 2.15
82 83 3.449632 GAGGCGAGAGAGGTTTTCATAC 58.550 50.000 0.00 0.00 0.00 2.39
83 84 2.832129 AGGCGAGAGAGGTTTTCATACA 59.168 45.455 0.00 0.00 0.00 2.29
84 85 3.260884 AGGCGAGAGAGGTTTTCATACAA 59.739 43.478 0.00 0.00 0.00 2.41
85 86 3.371285 GGCGAGAGAGGTTTTCATACAAC 59.629 47.826 0.00 0.00 0.00 3.32
86 87 3.994392 GCGAGAGAGGTTTTCATACAACA 59.006 43.478 0.00 0.00 0.00 3.33
87 88 4.631813 GCGAGAGAGGTTTTCATACAACAT 59.368 41.667 0.00 0.00 0.00 2.71
88 89 5.220491 GCGAGAGAGGTTTTCATACAACATC 60.220 44.000 0.00 0.00 35.60 3.06
89 90 5.292101 CGAGAGAGGTTTTCATACAACATCC 59.708 44.000 0.00 0.00 35.91 3.51
90 91 6.126863 AGAGAGGTTTTCATACAACATCCA 57.873 37.500 0.00 0.00 35.91 3.41
91 92 5.940470 AGAGAGGTTTTCATACAACATCCAC 59.060 40.000 0.00 0.00 35.91 4.02
92 93 4.695455 AGAGGTTTTCATACAACATCCACG 59.305 41.667 0.00 0.00 35.91 4.94
93 94 3.756434 AGGTTTTCATACAACATCCACGG 59.244 43.478 0.00 0.00 0.00 4.94
94 95 3.504520 GGTTTTCATACAACATCCACGGT 59.495 43.478 0.00 0.00 0.00 4.83
95 96 4.022676 GGTTTTCATACAACATCCACGGTT 60.023 41.667 0.00 0.00 0.00 4.44
96 97 5.151389 GTTTTCATACAACATCCACGGTTC 58.849 41.667 0.00 0.00 0.00 3.62
97 98 3.686916 TCATACAACATCCACGGTTCA 57.313 42.857 0.00 0.00 0.00 3.18
98 99 4.009370 TCATACAACATCCACGGTTCAA 57.991 40.909 0.00 0.00 0.00 2.69
99 100 4.584874 TCATACAACATCCACGGTTCAAT 58.415 39.130 0.00 0.00 0.00 2.57
100 101 5.735766 TCATACAACATCCACGGTTCAATA 58.264 37.500 0.00 0.00 0.00 1.90
101 102 6.353323 TCATACAACATCCACGGTTCAATAT 58.647 36.000 0.00 0.00 0.00 1.28
102 103 6.826231 TCATACAACATCCACGGTTCAATATT 59.174 34.615 0.00 0.00 0.00 1.28
103 104 5.309323 ACAACATCCACGGTTCAATATTG 57.691 39.130 9.29 9.29 0.00 1.90
104 105 5.007034 ACAACATCCACGGTTCAATATTGA 58.993 37.500 14.23 14.23 34.92 2.57
105 106 5.475220 ACAACATCCACGGTTCAATATTGAA 59.525 36.000 23.86 23.86 44.31 2.69
106 107 5.818136 ACATCCACGGTTCAATATTGAAG 57.182 39.130 27.26 19.68 46.80 3.02
107 108 5.253330 ACATCCACGGTTCAATATTGAAGT 58.747 37.500 27.26 20.25 46.80 3.01
108 109 5.123820 ACATCCACGGTTCAATATTGAAGTG 59.876 40.000 27.69 27.69 46.80 3.16
109 110 4.647611 TCCACGGTTCAATATTGAAGTGT 58.352 39.130 29.77 25.86 46.80 3.55
110 111 5.067273 TCCACGGTTCAATATTGAAGTGTT 58.933 37.500 29.77 16.68 46.80 3.32
111 112 5.180492 TCCACGGTTCAATATTGAAGTGTTC 59.820 40.000 29.77 20.20 46.80 3.18
112 113 5.390613 CACGGTTCAATATTGAAGTGTTCC 58.609 41.667 27.26 22.23 46.80 3.62
113 114 5.181245 CACGGTTCAATATTGAAGTGTTCCT 59.819 40.000 27.26 13.19 46.80 3.36
114 115 5.181245 ACGGTTCAATATTGAAGTGTTCCTG 59.819 40.000 27.26 20.81 46.80 3.86
115 116 5.411361 CGGTTCAATATTGAAGTGTTCCTGA 59.589 40.000 27.26 3.36 46.80 3.86
116 117 6.072728 CGGTTCAATATTGAAGTGTTCCTGAA 60.073 38.462 27.26 2.87 46.80 3.02
117 118 7.308435 GGTTCAATATTGAAGTGTTCCTGAAG 58.692 38.462 27.26 0.00 46.80 3.02
118 119 7.174946 GGTTCAATATTGAAGTGTTCCTGAAGA 59.825 37.037 27.26 2.26 46.80 2.87
119 120 7.912056 TCAATATTGAAGTGTTCCTGAAGAG 57.088 36.000 15.82 0.00 33.55 2.85
120 121 6.881065 TCAATATTGAAGTGTTCCTGAAGAGG 59.119 38.462 15.82 0.00 35.94 3.69
121 122 7.256655 TCAATATTGAAGTGTTCCTGAAGAGGA 60.257 37.037 15.82 0.00 39.42 3.71
129 130 2.534042 TCCTGAAGAGGACGAAGGAT 57.466 50.000 0.00 0.00 44.13 3.24
130 131 2.103373 TCCTGAAGAGGACGAAGGATG 58.897 52.381 0.00 0.00 44.13 3.51
131 132 2.103373 CCTGAAGAGGACGAAGGATGA 58.897 52.381 0.00 0.00 42.93 2.92
132 133 2.497675 CCTGAAGAGGACGAAGGATGAA 59.502 50.000 0.00 0.00 42.93 2.57
133 134 3.516615 CTGAAGAGGACGAAGGATGAAC 58.483 50.000 0.00 0.00 0.00 3.18
134 135 2.094700 TGAAGAGGACGAAGGATGAACG 60.095 50.000 0.00 0.00 0.00 3.95
135 136 0.818296 AGAGGACGAAGGATGAACGG 59.182 55.000 0.00 0.00 0.00 4.44
136 137 0.531200 GAGGACGAAGGATGAACGGT 59.469 55.000 0.00 0.00 0.00 4.83
137 138 0.531200 AGGACGAAGGATGAACGGTC 59.469 55.000 0.00 0.00 0.00 4.79
138 139 0.245539 GGACGAAGGATGAACGGTCA 59.754 55.000 5.17 5.17 38.41 4.02
139 140 1.337447 GGACGAAGGATGAACGGTCAA 60.337 52.381 7.51 0.00 37.30 3.18
140 141 2.618053 GACGAAGGATGAACGGTCAAT 58.382 47.619 7.51 0.00 37.30 2.57
141 142 2.603560 GACGAAGGATGAACGGTCAATC 59.396 50.000 7.51 5.78 37.30 2.67
142 143 2.028476 ACGAAGGATGAACGGTCAATCA 60.028 45.455 7.51 0.00 37.30 2.57
143 144 3.198068 CGAAGGATGAACGGTCAATCAT 58.802 45.455 7.51 0.27 37.30 2.45
147 148 3.951979 GATGAACGGTCAATCATCCAC 57.048 47.619 7.51 0.00 43.90 4.02
148 149 2.849294 TGAACGGTCAATCATCCACA 57.151 45.000 0.00 0.00 0.00 4.17
149 150 2.698803 TGAACGGTCAATCATCCACAG 58.301 47.619 0.00 0.00 0.00 3.66
150 151 2.009774 GAACGGTCAATCATCCACAGG 58.990 52.381 0.00 0.00 0.00 4.00
151 152 0.392998 ACGGTCAATCATCCACAGGC 60.393 55.000 0.00 0.00 0.00 4.85
152 153 0.392863 CGGTCAATCATCCACAGGCA 60.393 55.000 0.00 0.00 0.00 4.75
153 154 1.098050 GGTCAATCATCCACAGGCAC 58.902 55.000 0.00 0.00 0.00 5.01
154 155 1.340405 GGTCAATCATCCACAGGCACT 60.340 52.381 0.00 0.00 43.88 4.40
169 170 2.453983 GCACTGGCCTAAAATTGCAA 57.546 45.000 3.32 0.00 0.00 4.08
170 171 2.765122 GCACTGGCCTAAAATTGCAAA 58.235 42.857 1.71 0.00 0.00 3.68
171 172 2.738314 GCACTGGCCTAAAATTGCAAAG 59.262 45.455 1.71 0.00 0.00 2.77
172 173 3.554752 GCACTGGCCTAAAATTGCAAAGA 60.555 43.478 1.71 0.00 0.00 2.52
173 174 3.989817 CACTGGCCTAAAATTGCAAAGAC 59.010 43.478 1.71 0.00 0.00 3.01
174 175 3.006859 ACTGGCCTAAAATTGCAAAGACC 59.993 43.478 1.71 0.00 0.00 3.85
175 176 3.238597 TGGCCTAAAATTGCAAAGACCT 58.761 40.909 1.71 0.00 0.00 3.85
176 177 3.645687 TGGCCTAAAATTGCAAAGACCTT 59.354 39.130 1.71 0.00 0.00 3.50
177 178 4.245660 GGCCTAAAATTGCAAAGACCTTC 58.754 43.478 1.71 0.00 0.00 3.46
178 179 4.262420 GGCCTAAAATTGCAAAGACCTTCA 60.262 41.667 1.71 0.00 0.00 3.02
179 180 5.296748 GCCTAAAATTGCAAAGACCTTCAA 58.703 37.500 1.71 0.00 0.00 2.69
180 181 5.177511 GCCTAAAATTGCAAAGACCTTCAAC 59.822 40.000 1.71 0.00 0.00 3.18
181 182 6.279882 CCTAAAATTGCAAAGACCTTCAACA 58.720 36.000 1.71 0.00 0.00 3.33
182 183 6.930722 CCTAAAATTGCAAAGACCTTCAACAT 59.069 34.615 1.71 0.00 0.00 2.71
183 184 6.849588 AAAATTGCAAAGACCTTCAACATC 57.150 33.333 1.71 0.00 0.00 3.06
184 185 5.534207 AATTGCAAAGACCTTCAACATCA 57.466 34.783 1.71 0.00 0.00 3.07
185 186 4.998671 TTGCAAAGACCTTCAACATCAA 57.001 36.364 0.00 0.00 0.00 2.57
186 187 5.534207 TTGCAAAGACCTTCAACATCAAT 57.466 34.783 0.00 0.00 0.00 2.57
187 188 4.873817 TGCAAAGACCTTCAACATCAATG 58.126 39.130 0.00 0.00 0.00 2.82
188 189 4.583907 TGCAAAGACCTTCAACATCAATGA 59.416 37.500 0.00 0.00 0.00 2.57
189 190 5.068855 TGCAAAGACCTTCAACATCAATGAA 59.931 36.000 0.00 0.00 35.60 2.57
200 201 8.853077 TTCAACATCAATGAAGACTCACTATT 57.147 30.769 0.00 0.00 33.30 1.73
201 202 8.484641 TCAACATCAATGAAGACTCACTATTC 57.515 34.615 0.00 0.00 33.30 1.75
202 203 7.276438 TCAACATCAATGAAGACTCACTATTCG 59.724 37.037 0.00 0.00 33.30 3.34
203 204 5.521735 ACATCAATGAAGACTCACTATTCGC 59.478 40.000 0.00 0.00 33.30 4.70
204 205 4.433615 TCAATGAAGACTCACTATTCGCC 58.566 43.478 0.00 0.00 33.30 5.54
205 206 4.160439 TCAATGAAGACTCACTATTCGCCT 59.840 41.667 0.00 0.00 33.30 5.52
206 207 4.744795 ATGAAGACTCACTATTCGCCTT 57.255 40.909 0.00 0.00 33.30 4.35
207 208 4.111375 TGAAGACTCACTATTCGCCTTC 57.889 45.455 0.00 0.00 0.00 3.46
208 209 3.119101 TGAAGACTCACTATTCGCCTTCC 60.119 47.826 0.00 0.00 0.00 3.46
209 210 1.405821 AGACTCACTATTCGCCTTCCG 59.594 52.381 0.00 0.00 38.61 4.30
210 211 0.179108 ACTCACTATTCGCCTTCCGC 60.179 55.000 0.00 0.00 36.73 5.54
211 212 0.103208 CTCACTATTCGCCTTCCGCT 59.897 55.000 0.00 0.00 36.73 5.52
212 213 0.535335 TCACTATTCGCCTTCCGCTT 59.465 50.000 0.00 0.00 36.73 4.68
213 214 1.752498 TCACTATTCGCCTTCCGCTTA 59.248 47.619 0.00 0.00 36.73 3.09
214 215 2.166870 TCACTATTCGCCTTCCGCTTAA 59.833 45.455 0.00 0.00 36.73 1.85
215 216 2.284417 CACTATTCGCCTTCCGCTTAAC 59.716 50.000 0.00 0.00 36.73 2.01
216 217 1.865340 CTATTCGCCTTCCGCTTAACC 59.135 52.381 0.00 0.00 36.73 2.85
228 229 1.739067 GCTTAACCAGGCGAAGATGT 58.261 50.000 5.28 0.00 0.00 3.06
276 277 1.448893 GCGGCCCTCGTTTATGACA 60.449 57.895 0.00 0.00 41.72 3.58
281 282 1.379527 CCCTCGTTTATGACAAGGCC 58.620 55.000 0.00 0.00 0.00 5.19
283 284 1.006832 CTCGTTTATGACAAGGCCGG 58.993 55.000 0.00 0.00 0.00 6.13
286 287 2.403378 TTTATGACAAGGCCGGCGC 61.403 57.895 22.54 13.90 0.00 6.53
373 374 3.324099 TTCTCGGCGTCGCTGACTC 62.324 63.158 24.51 2.29 39.19 3.36
393 394 1.527380 GCGGGTCCACCAGTTTTCA 60.527 57.895 0.00 0.00 40.22 2.69
394 395 0.893727 GCGGGTCCACCAGTTTTCAT 60.894 55.000 0.00 0.00 40.22 2.57
396 397 0.603065 GGGTCCACCAGTTTTCATGC 59.397 55.000 0.00 0.00 39.85 4.06
410 411 4.599047 TTTCATGCCAAAATCGTTTCCT 57.401 36.364 0.00 0.00 0.00 3.36
412 413 3.420893 TCATGCCAAAATCGTTTCCTCT 58.579 40.909 0.00 0.00 0.00 3.69
413 414 4.584874 TCATGCCAAAATCGTTTCCTCTA 58.415 39.130 0.00 0.00 0.00 2.43
421 422 1.810030 CGTTTCCTCTAGCGCCACC 60.810 63.158 2.29 0.00 0.00 4.61
425 426 3.227276 CCTCTAGCGCCACCGGAT 61.227 66.667 9.46 0.00 34.32 4.18
446 447 4.867599 CCCTAGCGCGTCGGGTTC 62.868 72.222 19.52 0.00 33.16 3.62
475 476 2.024729 GCCAGCGCTAATTTCGGC 59.975 61.111 17.16 17.16 0.00 5.54
499 500 1.092348 ACCGGCGAAATTTAGGCTTC 58.908 50.000 19.77 2.66 0.00 3.86
503 504 2.365582 GGCGAAATTTAGGCTTCTGGA 58.634 47.619 16.04 0.00 0.00 3.86
504 505 2.356069 GGCGAAATTTAGGCTTCTGGAG 59.644 50.000 16.04 0.00 0.00 3.86
505 506 3.010420 GCGAAATTTAGGCTTCTGGAGT 58.990 45.455 0.00 0.00 0.00 3.85
508 509 2.317530 ATTTAGGCTTCTGGAGTCGC 57.682 50.000 0.00 0.00 34.31 5.19
511 512 0.752009 TAGGCTTCTGGAGTCGCGAT 60.752 55.000 14.06 0.47 34.31 4.58
512 513 1.153549 GGCTTCTGGAGTCGCGATT 60.154 57.895 14.06 8.44 0.00 3.34
514 515 1.424493 GCTTCTGGAGTCGCGATTGG 61.424 60.000 14.06 0.52 0.00 3.16
545 555 0.605589 CAAGCCAAGGAGTCTCGAGT 59.394 55.000 13.13 0.00 0.00 4.18
550 560 1.228894 AAGGAGTCTCGAGTGGCCA 60.229 57.895 13.13 0.00 0.00 5.36
559 569 3.256960 GAGTGGCCAGTTGGGGGA 61.257 66.667 15.96 0.00 37.04 4.81
590 600 7.281100 GTGGAAATGCTCTTAGTGCTAAATACT 59.719 37.037 7.78 0.00 0.00 2.12
591 601 8.482943 TGGAAATGCTCTTAGTGCTAAATACTA 58.517 33.333 7.78 0.00 0.00 1.82
592 602 9.326413 GGAAATGCTCTTAGTGCTAAATACTAA 57.674 33.333 7.78 0.00 38.06 2.24
595 605 7.715265 TGCTCTTAGTGCTAAATACTAATGC 57.285 36.000 7.78 0.00 39.23 3.56
596 606 6.706270 TGCTCTTAGTGCTAAATACTAATGCC 59.294 38.462 7.78 0.00 39.23 4.40
597 607 6.931840 GCTCTTAGTGCTAAATACTAATGCCT 59.068 38.462 0.00 0.00 39.23 4.75
598 608 7.117092 GCTCTTAGTGCTAAATACTAATGCCTC 59.883 40.741 0.00 0.00 39.23 4.70
599 609 7.442656 TCTTAGTGCTAAATACTAATGCCTCC 58.557 38.462 0.00 0.00 39.23 4.30
600 610 5.896073 AGTGCTAAATACTAATGCCTCCT 57.104 39.130 0.00 0.00 0.00 3.69
601 611 5.859495 AGTGCTAAATACTAATGCCTCCTC 58.141 41.667 0.00 0.00 0.00 3.71
602 612 5.604650 AGTGCTAAATACTAATGCCTCCTCT 59.395 40.000 0.00 0.00 0.00 3.69
603 613 5.698545 GTGCTAAATACTAATGCCTCCTCTG 59.301 44.000 0.00 0.00 0.00 3.35
604 614 5.221722 TGCTAAATACTAATGCCTCCTCTGG 60.222 44.000 0.00 0.00 0.00 3.86
605 615 5.221742 GCTAAATACTAATGCCTCCTCTGGT 60.222 44.000 0.00 0.00 0.00 4.00
606 616 5.717119 AAATACTAATGCCTCCTCTGGTT 57.283 39.130 0.00 0.00 0.00 3.67
607 617 5.717119 AATACTAATGCCTCCTCTGGTTT 57.283 39.130 0.00 0.00 0.00 3.27
608 618 3.356529 ACTAATGCCTCCTCTGGTTTG 57.643 47.619 0.00 0.00 0.00 2.93
609 619 2.025887 ACTAATGCCTCCTCTGGTTTGG 60.026 50.000 0.00 0.00 0.00 3.28
610 620 1.075601 AATGCCTCCTCTGGTTTGGA 58.924 50.000 0.00 0.00 0.00 3.53
611 621 0.622665 ATGCCTCCTCTGGTTTGGAG 59.377 55.000 0.00 0.00 46.91 3.86
622 632 6.749923 CTCTGGTTTGGAGGAATTTCTTAG 57.250 41.667 0.00 0.00 0.00 2.18
623 633 5.570320 TCTGGTTTGGAGGAATTTCTTAGG 58.430 41.667 0.00 0.00 0.00 2.69
624 634 5.312178 TCTGGTTTGGAGGAATTTCTTAGGA 59.688 40.000 0.00 0.00 0.00 2.94
625 635 5.959512 TGGTTTGGAGGAATTTCTTAGGAA 58.040 37.500 0.00 0.00 0.00 3.36
626 636 6.561294 TGGTTTGGAGGAATTTCTTAGGAAT 58.439 36.000 0.00 0.00 0.00 3.01
627 637 7.016296 TGGTTTGGAGGAATTTCTTAGGAATT 58.984 34.615 0.00 0.00 0.00 2.17
628 638 7.512402 TGGTTTGGAGGAATTTCTTAGGAATTT 59.488 33.333 0.00 0.00 0.00 1.82
629 639 8.035394 GGTTTGGAGGAATTTCTTAGGAATTTC 58.965 37.037 11.68 11.68 39.30 2.17
630 640 8.585018 GTTTGGAGGAATTTCTTAGGAATTTCA 58.415 33.333 18.32 0.00 40.60 2.69
631 641 8.899887 TTGGAGGAATTTCTTAGGAATTTCAT 57.100 30.769 18.32 13.82 40.60 2.57
632 642 9.989296 TTGGAGGAATTTCTTAGGAATTTCATA 57.011 29.630 18.32 0.00 40.60 2.15
633 643 9.632638 TGGAGGAATTTCTTAGGAATTTCATAG 57.367 33.333 18.32 0.00 40.60 2.23
634 644 9.072375 GGAGGAATTTCTTAGGAATTTCATAGG 57.928 37.037 18.32 0.00 40.60 2.57
635 645 9.072375 GAGGAATTTCTTAGGAATTTCATAGGG 57.928 37.037 18.32 0.00 40.60 3.53
636 646 8.569596 AGGAATTTCTTAGGAATTTCATAGGGT 58.430 33.333 18.32 0.00 40.60 4.34
637 647 9.862149 GGAATTTCTTAGGAATTTCATAGGGTA 57.138 33.333 18.32 0.00 40.60 3.69
639 649 9.868160 AATTTCTTAGGAATTTCATAGGGTAGG 57.132 33.333 0.00 0.00 0.00 3.18
640 650 8.632731 TTTCTTAGGAATTTCATAGGGTAGGA 57.367 34.615 0.00 0.00 0.00 2.94
641 651 8.814448 TTCTTAGGAATTTCATAGGGTAGGAT 57.186 34.615 0.00 0.00 0.00 3.24
642 652 8.814448 TCTTAGGAATTTCATAGGGTAGGATT 57.186 34.615 0.00 0.00 0.00 3.01
643 653 9.237706 TCTTAGGAATTTCATAGGGTAGGATTT 57.762 33.333 0.00 0.00 0.00 2.17
644 654 9.868160 CTTAGGAATTTCATAGGGTAGGATTTT 57.132 33.333 0.00 0.00 0.00 1.82
682 692 9.656323 TTCCTATAGAGCTCTTTGTTTATAGGA 57.344 33.333 30.31 30.31 43.39 2.94
683 693 9.656323 TCCTATAGAGCTCTTTGTTTATAGGAA 57.344 33.333 31.14 21.22 42.72 3.36
687 697 7.200434 AGAGCTCTTTGTTTATAGGAATGGA 57.800 36.000 11.45 0.00 0.00 3.41
688 698 7.633789 AGAGCTCTTTGTTTATAGGAATGGAA 58.366 34.615 11.45 0.00 0.00 3.53
689 699 8.277918 AGAGCTCTTTGTTTATAGGAATGGAAT 58.722 33.333 11.45 0.00 0.00 3.01
690 700 8.457238 AGCTCTTTGTTTATAGGAATGGAATC 57.543 34.615 0.00 0.00 0.00 2.52
691 701 7.503902 AGCTCTTTGTTTATAGGAATGGAATCC 59.496 37.037 0.00 0.00 39.96 3.01
704 714 7.659652 GGAATGGAATCCTATTTCTACGAAG 57.340 40.000 0.00 0.00 36.50 3.79
705 715 7.442656 GGAATGGAATCCTATTTCTACGAAGA 58.557 38.462 0.00 0.00 36.50 2.87
706 716 7.931948 GGAATGGAATCCTATTTCTACGAAGAA 59.068 37.037 0.00 0.00 36.94 2.52
725 735 6.642733 AAGAAAATCTTCCTATCCTCCACA 57.357 37.500 0.00 0.00 28.99 4.17
726 736 6.838401 AGAAAATCTTCCTATCCTCCACAT 57.162 37.500 0.00 0.00 31.28 3.21
727 737 7.218314 AGAAAATCTTCCTATCCTCCACATT 57.782 36.000 0.00 0.00 31.28 2.71
728 738 7.646884 AGAAAATCTTCCTATCCTCCACATTT 58.353 34.615 0.00 0.00 31.28 2.32
729 739 8.118600 AGAAAATCTTCCTATCCTCCACATTTT 58.881 33.333 0.00 0.00 31.28 1.82
730 740 9.408648 GAAAATCTTCCTATCCTCCACATTTTA 57.591 33.333 0.00 0.00 0.00 1.52
731 741 9.942526 AAAATCTTCCTATCCTCCACATTTTAT 57.057 29.630 0.00 0.00 0.00 1.40
734 744 9.621239 ATCTTCCTATCCTCCACATTTTATAGA 57.379 33.333 0.00 0.00 0.00 1.98
735 745 9.447279 TCTTCCTATCCTCCACATTTTATAGAA 57.553 33.333 0.00 0.00 0.00 2.10
758 768 9.431887 AGAAAAATAAACATTAGCGTAGACTCA 57.568 29.630 0.00 0.00 0.00 3.41
761 771 9.988350 AAAATAAACATTAGCGTAGACTCAATG 57.012 29.630 0.00 0.00 33.75 2.82
762 772 8.942338 AATAAACATTAGCGTAGACTCAATGA 57.058 30.769 0.00 0.00 32.29 2.57
763 773 8.942338 ATAAACATTAGCGTAGACTCAATGAA 57.058 30.769 0.00 0.00 32.29 2.57
764 774 7.667043 AAACATTAGCGTAGACTCAATGAAA 57.333 32.000 0.00 0.00 32.29 2.69
765 775 7.667043 AACATTAGCGTAGACTCAATGAAAA 57.333 32.000 0.00 0.00 32.29 2.29
766 776 7.667043 ACATTAGCGTAGACTCAATGAAAAA 57.333 32.000 0.00 0.00 32.29 1.94
791 801 9.710900 AAAATCCTATGATGAAAAACAAAGGAC 57.289 29.630 0.00 0.00 33.44 3.85
792 802 8.421249 AATCCTATGATGAAAAACAAAGGACA 57.579 30.769 0.00 0.00 33.44 4.02
793 803 8.599624 ATCCTATGATGAAAAACAAAGGACAT 57.400 30.769 0.00 0.00 33.44 3.06
794 804 8.055279 TCCTATGATGAAAAACAAAGGACATC 57.945 34.615 0.00 0.00 35.96 3.06
795 805 7.890127 TCCTATGATGAAAAACAAAGGACATCT 59.110 33.333 0.00 0.00 36.25 2.90
796 806 8.186821 CCTATGATGAAAAACAAAGGACATCTC 58.813 37.037 0.00 0.00 36.25 2.75
797 807 6.331369 TGATGAAAAACAAAGGACATCTCC 57.669 37.500 0.00 0.00 36.25 3.71
811 821 7.552050 AGGACATCTCCTTTCCTATTCATAG 57.448 40.000 0.00 0.00 45.77 2.23
812 822 6.500049 AGGACATCTCCTTTCCTATTCATAGG 59.500 42.308 6.53 6.53 45.77 2.57
813 823 6.498651 GGACATCTCCTTTCCTATTCATAGGA 59.501 42.308 11.04 11.04 43.77 2.94
814 824 7.181845 GGACATCTCCTTTCCTATTCATAGGAT 59.818 40.741 15.10 0.00 44.25 3.24
828 838 9.622004 CTATTCATAGGATTTGAAATGCATGTC 57.378 33.333 10.16 10.16 36.72 3.06
829 839 7.407393 TTCATAGGATTTGAAATGCATGTCA 57.593 32.000 15.88 15.88 30.44 3.58
830 840 7.591421 TCATAGGATTTGAAATGCATGTCAT 57.409 32.000 20.25 6.54 36.87 3.06
831 841 7.654568 TCATAGGATTTGAAATGCATGTCATC 58.345 34.615 20.25 14.99 33.40 2.92
832 842 7.504574 TCATAGGATTTGAAATGCATGTCATCT 59.495 33.333 20.25 16.03 33.40 2.90
833 843 6.540438 AGGATTTGAAATGCATGTCATCTT 57.460 33.333 20.25 9.55 33.40 2.40
834 844 7.649533 AGGATTTGAAATGCATGTCATCTTA 57.350 32.000 20.25 2.52 33.40 2.10
835 845 8.246430 AGGATTTGAAATGCATGTCATCTTAT 57.754 30.769 20.25 11.21 33.40 1.73
836 846 8.701895 AGGATTTGAAATGCATGTCATCTTATT 58.298 29.630 20.25 2.21 33.40 1.40
837 847 9.321562 GGATTTGAAATGCATGTCATCTTATTT 57.678 29.630 20.25 0.00 33.40 1.40
840 850 9.932207 TTTGAAATGCATGTCATCTTATTTTCT 57.068 25.926 20.25 0.00 33.40 2.52
846 856 8.969260 TGCATGTCATCTTATTTTCTATGACT 57.031 30.769 13.59 0.19 45.40 3.41
847 857 9.399797 TGCATGTCATCTTATTTTCTATGACTT 57.600 29.630 13.59 6.42 45.40 3.01
886 896 9.768215 AATTTTTCTATCCTATGAACCAAAGGA 57.232 29.630 0.00 0.00 43.38 3.36
887 897 8.807948 TTTTTCTATCCTATGAACCAAAGGAG 57.192 34.615 0.00 0.00 42.53 3.69
888 898 6.500589 TTCTATCCTATGAACCAAAGGAGG 57.499 41.667 0.00 0.00 42.53 4.30
889 899 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
890 900 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
891 901 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
892 902 2.777692 CCTATGAACCAAAGGAGGCCTA 59.222 50.000 4.42 0.00 31.13 3.93
893 903 3.181450 CCTATGAACCAAAGGAGGCCTAG 60.181 52.174 4.42 0.00 31.13 3.02
894 904 0.991920 TGAACCAAAGGAGGCCTAGG 59.008 55.000 4.42 3.67 35.75 3.02
902 912 0.618981 AGGAGGCCTAGGTTTTTCGG 59.381 55.000 4.42 0.00 28.47 4.30
904 914 1.678123 GGAGGCCTAGGTTTTTCGGAC 60.678 57.143 4.42 0.00 0.00 4.79
905 915 1.002773 GAGGCCTAGGTTTTTCGGACA 59.997 52.381 4.42 0.00 0.00 4.02
906 916 1.003233 AGGCCTAGGTTTTTCGGACAG 59.997 52.381 1.29 0.00 0.00 3.51
922 932 2.025898 GACAGAGGGAGTACTACCTGC 58.974 57.143 32.27 21.03 46.12 4.85
1161 1399 0.821711 CCTCTCTCCTTCCGCGATCT 60.822 60.000 8.23 0.00 0.00 2.75
1264 1502 7.132863 GTGAGTCTTTTCCACAGATTTGTTAC 58.867 38.462 0.00 0.00 34.62 2.50
1311 1549 4.350816 TCCACCTTCTCCTCTGATTTTTCA 59.649 41.667 0.00 0.00 0.00 2.69
1344 1582 1.178276 CAGCCGTGAGAGTAAGAGGT 58.822 55.000 0.00 0.00 0.00 3.85
1370 1618 2.717639 AGGAGAGAGAGAGAGAGCAC 57.282 55.000 0.00 0.00 0.00 4.40
1391 1639 1.133761 GGGGCAAAGGGGAGATTACTC 60.134 57.143 0.00 0.00 41.94 2.59
1453 1701 3.525800 AGTCAAAGTAAAGTGGGGCAT 57.474 42.857 0.00 0.00 0.00 4.40
1463 1711 9.930158 AAAGTAAAGTGGGGCATTTTATCTATA 57.070 29.630 0.00 0.00 30.64 1.31
1464 1712 8.919777 AGTAAAGTGGGGCATTTTATCTATAC 57.080 34.615 0.00 0.00 30.64 1.47
1516 1764 2.524569 AAGTGGGGCATTTCGTTTTG 57.475 45.000 0.00 0.00 0.00 2.44
1725 1979 5.531122 TTAGCTCTTCTGTAACACACTGT 57.469 39.130 0.00 0.00 0.00 3.55
1858 2115 9.042008 TGTAACACTGTCTCTCTTTCATTTTAC 57.958 33.333 0.00 0.00 0.00 2.01
1860 2117 7.721286 ACACTGTCTCTCTTTCATTTTACTG 57.279 36.000 0.00 0.00 0.00 2.74
1974 2234 2.627515 TTGCTCTGCAGAACACTTCT 57.372 45.000 19.16 0.00 40.61 2.85
2010 2270 2.325484 TCAGTAGTTCCTGAGGTGCAA 58.675 47.619 0.00 0.00 36.57 4.08
2083 2343 4.943705 GCACTCTTTGTTATCCCAAGATCA 59.056 41.667 0.00 0.00 33.67 2.92
2247 2521 9.968743 CCTTCGTATTTGAATACTGTAGTTTTC 57.031 33.333 11.02 7.87 39.24 2.29
2259 2533 5.853936 ACTGTAGTTTTCTGTACTGCATCA 58.146 37.500 0.00 0.00 37.55 3.07
2264 2538 6.246420 AGTTTTCTGTACTGCATCAACATC 57.754 37.500 0.00 0.00 0.00 3.06
2370 2674 4.037327 TGCACTTGCTTTAACATGCAGTTA 59.963 37.500 2.33 0.00 40.72 2.24
2419 2723 2.816087 AGAGTGTTGCTTATGGTTGCTG 59.184 45.455 0.00 0.00 0.00 4.41
2528 2837 6.282199 ACGAGCTATTCAAAGAAAGAGGTA 57.718 37.500 0.00 0.00 29.07 3.08
2875 3184 1.676678 TATCACCTGACTGCTCGGGC 61.677 60.000 0.00 0.00 46.17 6.13
2895 3204 3.552068 GGCGTTCATTTACTGCACCTTTT 60.552 43.478 0.00 0.00 0.00 2.27
2983 3292 3.263425 AGTGACAGGGTTACACTTATGGG 59.737 47.826 0.00 0.00 41.21 4.00
3134 3443 3.468071 AAGGGTATTTCTGGTTTCCCC 57.532 47.619 0.00 0.00 35.90 4.81
3142 3451 0.821711 TCTGGTTTCCCCGTTGCAAG 60.822 55.000 0.00 0.00 35.15 4.01
3143 3452 1.076632 TGGTTTCCCCGTTGCAAGT 60.077 52.632 0.00 0.00 35.15 3.16
3144 3453 0.684805 TGGTTTCCCCGTTGCAAGTT 60.685 50.000 0.00 0.00 35.15 2.66
3145 3454 0.249280 GGTTTCCCCGTTGCAAGTTG 60.249 55.000 0.00 0.00 0.00 3.16
3146 3455 0.874175 GTTTCCCCGTTGCAAGTTGC 60.874 55.000 21.17 21.17 45.29 4.17
3371 3687 5.841810 TGTTATCCAAAGCAAGACAAAAGG 58.158 37.500 0.00 0.00 0.00 3.11
3389 3705 8.364129 ACAAAAGGTATTTGCACAAGTAAATG 57.636 30.769 0.00 0.00 39.81 2.32
3707 4031 4.400251 GGCAAATTGGAAGACTGATGATGA 59.600 41.667 0.00 0.00 0.00 2.92
3764 4089 0.310543 TGCGCTCGTCTGCAATTTTT 59.689 45.000 9.73 0.00 38.34 1.94
3771 4096 4.470462 CTCGTCTGCAATTTTTCTGAAGG 58.530 43.478 0.00 0.00 0.00 3.46
3883 4209 7.093552 CCTCCTGCTTATTCATACTAGTAGCAT 60.094 40.741 13.20 5.81 36.66 3.79
3917 4243 3.054361 ACCATGGACTATTTCTGTGTCCC 60.054 47.826 21.47 0.00 46.97 4.46
4019 4345 1.284715 GAACCGGGCCAACTTTTCG 59.715 57.895 6.32 0.00 0.00 3.46
4040 4366 4.940654 TCGTATTGATTCCTTGCATGACAA 59.059 37.500 0.00 0.00 36.62 3.18
4051 4377 2.089201 TGCATGACAATGAGAGGCTTG 58.911 47.619 0.00 0.00 35.67 4.01
4052 4378 1.202268 GCATGACAATGAGAGGCTTGC 60.202 52.381 0.00 0.00 35.67 4.01
4053 4379 2.366533 CATGACAATGAGAGGCTTGCT 58.633 47.619 0.00 0.00 35.67 3.91
4054 4380 3.538591 CATGACAATGAGAGGCTTGCTA 58.461 45.455 0.00 0.00 35.67 3.49
4055 4381 3.920231 TGACAATGAGAGGCTTGCTAT 57.080 42.857 0.00 0.00 0.00 2.97
4056 4382 5.303165 CATGACAATGAGAGGCTTGCTATA 58.697 41.667 0.00 0.00 35.67 1.31
4103 4429 3.117888 TCAAGTTTTCCTCTGGTCTTGCT 60.118 43.478 0.00 0.00 34.30 3.91
4136 4462 2.887152 AGAATTTCACACTGTTGGGCTC 59.113 45.455 0.00 0.00 0.00 4.70
4137 4463 1.238439 ATTTCACACTGTTGGGCTCG 58.762 50.000 0.00 0.00 0.00 5.03
4150 4476 3.766691 GCTCGAGGGGGCAACGTA 61.767 66.667 15.58 0.00 37.60 3.57
4151 4477 3.090219 GCTCGAGGGGGCAACGTAT 62.090 63.158 15.58 0.00 37.60 3.06
4152 4478 1.227263 CTCGAGGGGGCAACGTATG 60.227 63.158 3.91 0.00 37.60 2.39
4153 4479 1.672854 CTCGAGGGGGCAACGTATGA 61.673 60.000 3.91 0.00 37.60 2.15
4155 4481 1.087771 CGAGGGGGCAACGTATGAAC 61.088 60.000 0.00 0.00 37.60 3.18
4217 4544 7.468141 TCATCTTGATGAACACAGTACTAGT 57.532 36.000 10.50 0.00 0.00 2.57
4218 4545 8.575649 TCATCTTGATGAACACAGTACTAGTA 57.424 34.615 10.50 0.00 0.00 1.82
4219 4546 8.678199 TCATCTTGATGAACACAGTACTAGTAG 58.322 37.037 10.50 0.00 0.00 2.57
4220 4547 7.997773 TCTTGATGAACACAGTACTAGTAGT 57.002 36.000 8.14 8.14 0.00 2.73
4274 4601 5.334414 GGCTTATTTGCGAGATCATGTAAGG 60.334 44.000 0.00 0.00 0.00 2.69
4279 4606 2.093500 TGCGAGATCATGTAAGGCAAGT 60.093 45.455 0.00 0.00 0.00 3.16
4299 4626 6.291585 GCAAGTGTAACAAAAGGATTCGTTTG 60.292 38.462 10.48 10.48 44.21 2.93
4304 4631 8.813282 GTGTAACAAAAGGATTCGTTTGATTTT 58.187 29.630 17.94 5.85 42.30 1.82
4321 4648 6.822667 TGATTTTGTGTCACAGCTGATTAT 57.177 33.333 23.35 0.00 0.00 1.28
4378 4705 5.819825 TCTATGTCCAATATCTCGATCGG 57.180 43.478 16.41 6.26 0.00 4.18
4541 4868 0.479589 AGAATTGGGGTGAAGGGGGA 60.480 55.000 0.00 0.00 0.00 4.81
4546 4873 3.264845 GGGTGAAGGGGGAGGCAA 61.265 66.667 0.00 0.00 0.00 4.52
4575 5164 6.823689 TCTTATGTCCTAAATTTCAGACCTGC 59.176 38.462 14.61 0.00 0.00 4.85
4655 5265 5.423610 TCCAGCTGCTTCTCTAATTTCTACT 59.576 40.000 8.66 0.00 0.00 2.57
4656 5266 5.752955 CCAGCTGCTTCTCTAATTTCTACTC 59.247 44.000 8.66 0.00 0.00 2.59
4659 5269 5.983118 GCTGCTTCTCTAATTTCTACTCCTC 59.017 44.000 0.00 0.00 0.00 3.71
4660 5270 6.406400 GCTGCTTCTCTAATTTCTACTCCTCA 60.406 42.308 0.00 0.00 0.00 3.86
4663 5273 7.563188 TGCTTCTCTAATTTCTACTCCTCATCT 59.437 37.037 0.00 0.00 0.00 2.90
4686 5322 5.633830 TCTCTTTTCAAACATCTCATGCC 57.366 39.130 0.00 0.00 0.00 4.40
4693 5329 4.654915 TCAAACATCTCATGCCAAGAAGA 58.345 39.130 0.00 0.00 0.00 2.87
4700 5336 4.067896 TCTCATGCCAAGAAGACAGAAAC 58.932 43.478 0.00 0.00 0.00 2.78
4710 5346 5.179045 AGAAGACAGAAACGTCGAAGTTA 57.821 39.130 17.05 0.00 40.98 2.24
4722 5358 4.563524 GTCGAAGTTATTGACGTCCAAG 57.436 45.455 14.12 0.00 38.31 3.61
4723 5359 3.367025 GTCGAAGTTATTGACGTCCAAGG 59.633 47.826 14.12 0.00 38.31 3.61
4724 5360 2.093783 CGAAGTTATTGACGTCCAAGGC 59.906 50.000 14.12 0.69 38.31 4.35
4725 5361 2.851263 AGTTATTGACGTCCAAGGCA 57.149 45.000 14.12 0.00 38.31 4.75
4726 5362 2.699954 AGTTATTGACGTCCAAGGCAG 58.300 47.619 14.12 0.00 38.31 4.85
4727 5363 2.301870 AGTTATTGACGTCCAAGGCAGA 59.698 45.455 14.12 0.00 38.31 4.26
4728 5364 3.071479 GTTATTGACGTCCAAGGCAGAA 58.929 45.455 14.12 0.00 38.31 3.02
4729 5365 2.270352 ATTGACGTCCAAGGCAGAAA 57.730 45.000 14.12 0.00 38.31 2.52
4736 5372 0.105224 TCCAAGGCAGAAACGTCGAA 59.895 50.000 0.00 0.00 0.00 3.71
4769 5405 0.247736 AAGGCAGAATCGTCGAAGCT 59.752 50.000 0.00 0.00 0.00 3.74
4773 5409 1.996292 CAGAATCGTCGAAGCTCCAA 58.004 50.000 0.00 0.00 0.00 3.53
4775 5411 2.537625 CAGAATCGTCGAAGCTCCAATC 59.462 50.000 0.00 0.00 0.00 2.67
4778 5414 1.138883 CGTCGAAGCTCCAATCGGA 59.861 57.895 5.75 0.00 39.45 4.55
4779 5415 1.140407 CGTCGAAGCTCCAATCGGAC 61.140 60.000 5.75 2.87 39.45 4.79
4780 5416 0.173708 GTCGAAGCTCCAATCGGACT 59.826 55.000 5.75 0.00 39.45 3.85
4781 5417 0.173481 TCGAAGCTCCAATCGGACTG 59.827 55.000 5.75 0.00 39.45 3.51
4782 5418 0.807667 CGAAGCTCCAATCGGACTGG 60.808 60.000 0.00 0.00 35.91 4.00
4783 5419 0.537188 GAAGCTCCAATCGGACTGGA 59.463 55.000 8.06 8.06 40.77 3.86
4784 5420 0.984230 AAGCTCCAATCGGACTGGAA 59.016 50.000 9.72 0.00 42.43 3.53
4785 5421 1.207791 AGCTCCAATCGGACTGGAAT 58.792 50.000 9.72 0.00 42.43 3.01
4786 5422 1.134280 AGCTCCAATCGGACTGGAATG 60.134 52.381 9.72 0.11 42.43 2.67
4787 5423 1.407437 GCTCCAATCGGACTGGAATGT 60.407 52.381 9.72 0.00 42.43 2.71
4788 5424 2.283298 CTCCAATCGGACTGGAATGTG 58.717 52.381 9.72 0.00 42.43 3.21
4789 5425 1.628340 TCCAATCGGACTGGAATGTGT 59.372 47.619 5.58 0.00 40.08 3.72
4797 5433 2.027192 GGACTGGAATGTGTAGAAGGCA 60.027 50.000 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.908688 GCTTTGGAAAGGCCTGAAAA 57.091 45.000 5.69 4.07 44.00 2.29
8 9 2.951642 TCAGTGAACTGCTTTGGAAAGG 59.048 45.455 5.55 0.00 43.46 3.11
9 10 4.276678 TCATCAGTGAACTGCTTTGGAAAG 59.723 41.667 5.55 0.00 43.46 2.62
10 11 4.206375 TCATCAGTGAACTGCTTTGGAAA 58.794 39.130 5.55 0.00 43.46 3.13
11 12 3.819368 TCATCAGTGAACTGCTTTGGAA 58.181 40.909 5.55 0.00 43.46 3.53
13 14 4.778534 AATCATCAGTGAACTGCTTTGG 57.221 40.909 5.55 0.00 43.46 3.28
14 15 5.123502 AGCTAATCATCAGTGAACTGCTTTG 59.876 40.000 5.55 4.07 43.46 2.77
15 16 5.251764 AGCTAATCATCAGTGAACTGCTTT 58.748 37.500 5.55 0.30 43.46 3.51
16 17 4.841422 AGCTAATCATCAGTGAACTGCTT 58.159 39.130 5.55 0.00 43.46 3.91
17 18 4.161942 AGAGCTAATCATCAGTGAACTGCT 59.838 41.667 5.55 1.64 43.46 4.24
18 19 4.440880 AGAGCTAATCATCAGTGAACTGC 58.559 43.478 5.55 0.00 43.46 4.40
19 20 5.658468 TGAGAGCTAATCATCAGTGAACTG 58.342 41.667 3.98 3.98 45.08 3.16
20 21 5.929058 TGAGAGCTAATCATCAGTGAACT 57.071 39.130 0.00 0.00 38.01 3.01
21 22 6.183360 GGTTTGAGAGCTAATCATCAGTGAAC 60.183 42.308 0.00 3.32 38.01 3.18
22 23 5.877012 GGTTTGAGAGCTAATCATCAGTGAA 59.123 40.000 0.00 0.00 38.01 3.18
23 24 5.046376 TGGTTTGAGAGCTAATCATCAGTGA 60.046 40.000 0.00 0.00 39.04 3.41
24 25 5.064452 GTGGTTTGAGAGCTAATCATCAGTG 59.936 44.000 2.15 0.00 0.00 3.66
25 26 5.181748 GTGGTTTGAGAGCTAATCATCAGT 58.818 41.667 2.15 0.00 0.00 3.41
26 27 4.574013 GGTGGTTTGAGAGCTAATCATCAG 59.426 45.833 2.15 0.00 0.00 2.90
27 28 4.225942 AGGTGGTTTGAGAGCTAATCATCA 59.774 41.667 2.15 0.42 0.00 3.07
28 29 4.775236 AGGTGGTTTGAGAGCTAATCATC 58.225 43.478 2.15 0.00 0.00 2.92
29 30 4.472833 AGAGGTGGTTTGAGAGCTAATCAT 59.527 41.667 2.15 0.00 0.00 2.45
30 31 3.840666 AGAGGTGGTTTGAGAGCTAATCA 59.159 43.478 0.00 0.00 0.00 2.57
31 32 4.479786 AGAGGTGGTTTGAGAGCTAATC 57.520 45.455 0.00 0.00 0.00 1.75
32 33 5.163258 CCATAGAGGTGGTTTGAGAGCTAAT 60.163 44.000 0.00 0.00 34.46 1.73
33 34 4.162320 CCATAGAGGTGGTTTGAGAGCTAA 59.838 45.833 0.00 0.00 34.46 3.09
34 35 3.706594 CCATAGAGGTGGTTTGAGAGCTA 59.293 47.826 0.00 0.00 34.46 3.32
35 36 2.503356 CCATAGAGGTGGTTTGAGAGCT 59.497 50.000 0.00 0.00 34.46 4.09
36 37 2.911484 CCATAGAGGTGGTTTGAGAGC 58.089 52.381 0.00 0.00 34.46 4.09
49 50 0.958091 CTCGCCTCCTGACCATAGAG 59.042 60.000 0.00 0.00 0.00 2.43
50 51 0.551396 TCTCGCCTCCTGACCATAGA 59.449 55.000 0.00 0.00 0.00 1.98
51 52 0.958091 CTCTCGCCTCCTGACCATAG 59.042 60.000 0.00 0.00 0.00 2.23
52 53 0.551396 TCTCTCGCCTCCTGACCATA 59.449 55.000 0.00 0.00 0.00 2.74
53 54 0.754957 CTCTCTCGCCTCCTGACCAT 60.755 60.000 0.00 0.00 0.00 3.55
54 55 1.379176 CTCTCTCGCCTCCTGACCA 60.379 63.158 0.00 0.00 0.00 4.02
55 56 2.124693 CCTCTCTCGCCTCCTGACC 61.125 68.421 0.00 0.00 0.00 4.02
56 57 0.968393 AACCTCTCTCGCCTCCTGAC 60.968 60.000 0.00 0.00 0.00 3.51
57 58 0.251832 AAACCTCTCTCGCCTCCTGA 60.252 55.000 0.00 0.00 0.00 3.86
58 59 0.610687 AAAACCTCTCTCGCCTCCTG 59.389 55.000 0.00 0.00 0.00 3.86
59 60 0.899019 GAAAACCTCTCTCGCCTCCT 59.101 55.000 0.00 0.00 0.00 3.69
60 61 0.608640 TGAAAACCTCTCTCGCCTCC 59.391 55.000 0.00 0.00 0.00 4.30
61 62 2.682155 ATGAAAACCTCTCTCGCCTC 57.318 50.000 0.00 0.00 0.00 4.70
62 63 2.832129 TGTATGAAAACCTCTCTCGCCT 59.168 45.455 0.00 0.00 0.00 5.52
63 64 3.247006 TGTATGAAAACCTCTCTCGCC 57.753 47.619 0.00 0.00 0.00 5.54
64 65 3.994392 TGTTGTATGAAAACCTCTCTCGC 59.006 43.478 0.00 0.00 0.00 5.03
65 66 5.292101 GGATGTTGTATGAAAACCTCTCTCG 59.708 44.000 0.00 0.00 0.00 4.04
66 67 6.092807 GTGGATGTTGTATGAAAACCTCTCTC 59.907 42.308 0.00 0.00 0.00 3.20
67 68 5.940470 GTGGATGTTGTATGAAAACCTCTCT 59.060 40.000 0.00 0.00 0.00 3.10
68 69 5.163854 CGTGGATGTTGTATGAAAACCTCTC 60.164 44.000 0.00 0.00 0.00 3.20
69 70 4.695455 CGTGGATGTTGTATGAAAACCTCT 59.305 41.667 0.00 0.00 0.00 3.69
70 71 4.142687 CCGTGGATGTTGTATGAAAACCTC 60.143 45.833 0.00 0.00 0.00 3.85
71 72 3.756434 CCGTGGATGTTGTATGAAAACCT 59.244 43.478 0.00 0.00 0.00 3.50
72 73 3.504520 ACCGTGGATGTTGTATGAAAACC 59.495 43.478 0.00 0.00 0.00 3.27
73 74 4.759516 ACCGTGGATGTTGTATGAAAAC 57.240 40.909 0.00 0.00 0.00 2.43
74 75 4.822350 TGAACCGTGGATGTTGTATGAAAA 59.178 37.500 0.00 0.00 0.00 2.29
75 76 4.390264 TGAACCGTGGATGTTGTATGAAA 58.610 39.130 0.00 0.00 0.00 2.69
76 77 4.009370 TGAACCGTGGATGTTGTATGAA 57.991 40.909 0.00 0.00 0.00 2.57
77 78 3.686916 TGAACCGTGGATGTTGTATGA 57.313 42.857 0.00 0.00 0.00 2.15
78 79 4.963276 ATTGAACCGTGGATGTTGTATG 57.037 40.909 0.00 0.00 0.00 2.39
79 80 6.826231 TCAATATTGAACCGTGGATGTTGTAT 59.174 34.615 15.82 0.00 33.55 2.29
80 81 6.174049 TCAATATTGAACCGTGGATGTTGTA 58.826 36.000 15.82 0.00 33.55 2.41
81 82 5.007034 TCAATATTGAACCGTGGATGTTGT 58.993 37.500 15.82 0.00 33.55 3.32
82 83 5.559427 TCAATATTGAACCGTGGATGTTG 57.441 39.130 15.82 0.00 33.55 3.33
83 84 5.710099 ACTTCAATATTGAACCGTGGATGTT 59.290 36.000 23.86 3.88 41.88 2.71
84 85 5.123820 CACTTCAATATTGAACCGTGGATGT 59.876 40.000 27.30 18.97 41.88 3.06
85 86 5.123820 ACACTTCAATATTGAACCGTGGATG 59.876 40.000 32.52 21.86 42.69 3.51
86 87 5.253330 ACACTTCAATATTGAACCGTGGAT 58.747 37.500 32.52 20.93 42.69 3.41
87 88 4.647611 ACACTTCAATATTGAACCGTGGA 58.352 39.130 32.52 15.34 42.69 4.02
88 89 5.371115 AACACTTCAATATTGAACCGTGG 57.629 39.130 32.52 23.33 42.69 4.94
89 90 5.181245 AGGAACACTTCAATATTGAACCGTG 59.819 40.000 30.27 30.27 43.38 4.94
90 91 5.181245 CAGGAACACTTCAATATTGAACCGT 59.819 40.000 23.86 19.79 41.88 4.83
91 92 5.411361 TCAGGAACACTTCAATATTGAACCG 59.589 40.000 23.86 19.24 41.88 4.44
92 93 6.817765 TCAGGAACACTTCAATATTGAACC 57.182 37.500 23.86 21.55 41.88 3.62
93 94 8.099364 TCTTCAGGAACACTTCAATATTGAAC 57.901 34.615 23.86 14.82 41.88 3.18
94 95 7.391554 CCTCTTCAGGAACACTTCAATATTGAA 59.608 37.037 25.44 25.44 43.65 2.69
95 96 6.881065 CCTCTTCAGGAACACTTCAATATTGA 59.119 38.462 14.23 14.23 43.65 2.57
96 97 6.881065 TCCTCTTCAGGAACACTTCAATATTG 59.119 38.462 9.29 9.29 46.84 1.90
97 98 7.020827 TCCTCTTCAGGAACACTTCAATATT 57.979 36.000 0.00 0.00 46.84 1.28
98 99 6.627087 TCCTCTTCAGGAACACTTCAATAT 57.373 37.500 0.00 0.00 46.84 1.28
100 101 4.982241 TCCTCTTCAGGAACACTTCAAT 57.018 40.909 0.00 0.00 46.84 2.57
111 112 2.103373 TCATCCTTCGTCCTCTTCAGG 58.897 52.381 0.00 0.00 42.01 3.86
112 113 3.516615 GTTCATCCTTCGTCCTCTTCAG 58.483 50.000 0.00 0.00 0.00 3.02
113 114 2.094700 CGTTCATCCTTCGTCCTCTTCA 60.095 50.000 0.00 0.00 0.00 3.02
114 115 2.531206 CGTTCATCCTTCGTCCTCTTC 58.469 52.381 0.00 0.00 0.00 2.87
115 116 1.204941 CCGTTCATCCTTCGTCCTCTT 59.795 52.381 0.00 0.00 0.00 2.85
116 117 0.818296 CCGTTCATCCTTCGTCCTCT 59.182 55.000 0.00 0.00 0.00 3.69
117 118 0.531200 ACCGTTCATCCTTCGTCCTC 59.469 55.000 0.00 0.00 0.00 3.71
118 119 0.531200 GACCGTTCATCCTTCGTCCT 59.469 55.000 0.00 0.00 0.00 3.85
119 120 0.245539 TGACCGTTCATCCTTCGTCC 59.754 55.000 0.00 0.00 0.00 4.79
120 121 2.074547 TTGACCGTTCATCCTTCGTC 57.925 50.000 0.00 0.00 0.00 4.20
121 122 2.028476 TGATTGACCGTTCATCCTTCGT 60.028 45.455 0.00 0.00 0.00 3.85
122 123 2.616960 TGATTGACCGTTCATCCTTCG 58.383 47.619 0.00 0.00 0.00 3.79
123 124 4.802876 GATGATTGACCGTTCATCCTTC 57.197 45.455 2.25 0.00 41.46 3.46
127 128 3.270027 TGTGGATGATTGACCGTTCATC 58.730 45.455 4.69 4.69 44.84 2.92
128 129 3.273434 CTGTGGATGATTGACCGTTCAT 58.727 45.455 0.00 0.00 35.33 2.57
129 130 2.615240 CCTGTGGATGATTGACCGTTCA 60.615 50.000 0.00 0.00 0.00 3.18
130 131 2.009774 CCTGTGGATGATTGACCGTTC 58.990 52.381 0.00 0.00 0.00 3.95
131 132 1.950484 GCCTGTGGATGATTGACCGTT 60.950 52.381 0.00 0.00 0.00 4.44
132 133 0.392998 GCCTGTGGATGATTGACCGT 60.393 55.000 0.00 0.00 0.00 4.83
133 134 0.392863 TGCCTGTGGATGATTGACCG 60.393 55.000 0.00 0.00 0.00 4.79
134 135 1.098050 GTGCCTGTGGATGATTGACC 58.902 55.000 0.00 0.00 0.00 4.02
135 136 1.741706 CAGTGCCTGTGGATGATTGAC 59.258 52.381 0.00 0.00 0.00 3.18
136 137 1.340308 CCAGTGCCTGTGGATGATTGA 60.340 52.381 2.18 0.00 37.23 2.57
137 138 1.100510 CCAGTGCCTGTGGATGATTG 58.899 55.000 2.18 0.00 37.23 2.67
138 139 0.682209 GCCAGTGCCTGTGGATGATT 60.682 55.000 0.37 0.00 37.23 2.57
139 140 1.077212 GCCAGTGCCTGTGGATGAT 60.077 57.895 0.37 0.00 37.23 2.45
140 141 2.352422 GCCAGTGCCTGTGGATGA 59.648 61.111 0.37 0.00 37.23 2.92
150 151 2.453983 TTGCAATTTTAGGCCAGTGC 57.546 45.000 5.01 5.80 0.00 4.40
151 152 3.989817 GTCTTTGCAATTTTAGGCCAGTG 59.010 43.478 5.01 0.00 0.00 3.66
152 153 3.006859 GGTCTTTGCAATTTTAGGCCAGT 59.993 43.478 13.46 0.00 32.64 4.00
153 154 3.259123 AGGTCTTTGCAATTTTAGGCCAG 59.741 43.478 19.09 2.85 34.83 4.85
154 155 3.238597 AGGTCTTTGCAATTTTAGGCCA 58.761 40.909 19.09 0.00 34.83 5.36
155 156 3.961480 AGGTCTTTGCAATTTTAGGCC 57.039 42.857 10.90 10.90 32.52 5.19
156 157 4.881920 TGAAGGTCTTTGCAATTTTAGGC 58.118 39.130 0.00 0.00 0.00 3.93
157 158 6.279882 TGTTGAAGGTCTTTGCAATTTTAGG 58.720 36.000 0.00 0.00 0.00 2.69
158 159 7.652909 TGATGTTGAAGGTCTTTGCAATTTTAG 59.347 33.333 0.00 0.00 0.00 1.85
159 160 7.495901 TGATGTTGAAGGTCTTTGCAATTTTA 58.504 30.769 0.00 0.00 0.00 1.52
160 161 6.347696 TGATGTTGAAGGTCTTTGCAATTTT 58.652 32.000 0.00 0.00 0.00 1.82
161 162 5.916318 TGATGTTGAAGGTCTTTGCAATTT 58.084 33.333 0.00 0.00 0.00 1.82
162 163 5.534207 TGATGTTGAAGGTCTTTGCAATT 57.466 34.783 0.00 0.00 0.00 2.32
163 164 5.534207 TTGATGTTGAAGGTCTTTGCAAT 57.466 34.783 0.00 0.00 0.00 3.56
164 165 4.998671 TTGATGTTGAAGGTCTTTGCAA 57.001 36.364 0.00 0.00 0.00 4.08
165 166 4.583907 TCATTGATGTTGAAGGTCTTTGCA 59.416 37.500 0.00 0.00 0.00 4.08
166 167 5.125100 TCATTGATGTTGAAGGTCTTTGC 57.875 39.130 0.00 0.00 0.00 3.68
167 168 6.860023 GTCTTCATTGATGTTGAAGGTCTTTG 59.140 38.462 12.12 0.00 46.50 2.77
168 169 6.774656 AGTCTTCATTGATGTTGAAGGTCTTT 59.225 34.615 12.12 0.00 46.50 2.52
169 170 6.302269 AGTCTTCATTGATGTTGAAGGTCTT 58.698 36.000 12.12 0.00 46.50 3.01
170 171 5.874093 AGTCTTCATTGATGTTGAAGGTCT 58.126 37.500 12.12 8.89 46.50 3.85
171 172 5.702670 TGAGTCTTCATTGATGTTGAAGGTC 59.297 40.000 12.12 10.09 46.50 3.85
172 173 5.471456 GTGAGTCTTCATTGATGTTGAAGGT 59.529 40.000 12.12 2.41 46.50 3.50
173 174 5.704515 AGTGAGTCTTCATTGATGTTGAAGG 59.295 40.000 12.12 0.00 46.50 3.46
175 176 8.853077 AATAGTGAGTCTTCATTGATGTTGAA 57.147 30.769 0.00 0.00 35.39 2.69
176 177 7.276438 CGAATAGTGAGTCTTCATTGATGTTGA 59.724 37.037 0.00 0.00 35.39 3.18
177 178 7.397194 CGAATAGTGAGTCTTCATTGATGTTG 58.603 38.462 0.00 0.00 35.39 3.33
178 179 6.036517 GCGAATAGTGAGTCTTCATTGATGTT 59.963 38.462 0.00 0.00 35.39 2.71
179 180 5.521735 GCGAATAGTGAGTCTTCATTGATGT 59.478 40.000 0.00 0.00 35.39 3.06
180 181 5.050499 GGCGAATAGTGAGTCTTCATTGATG 60.050 44.000 0.00 0.00 35.39 3.07
181 182 5.053145 GGCGAATAGTGAGTCTTCATTGAT 58.947 41.667 0.00 0.00 35.39 2.57
182 183 4.160439 AGGCGAATAGTGAGTCTTCATTGA 59.840 41.667 0.00 0.00 35.39 2.57
183 184 4.437239 AGGCGAATAGTGAGTCTTCATTG 58.563 43.478 0.00 0.00 35.39 2.82
184 185 4.744795 AGGCGAATAGTGAGTCTTCATT 57.255 40.909 0.00 0.00 35.39 2.57
185 186 4.442192 GGAAGGCGAATAGTGAGTCTTCAT 60.442 45.833 10.52 0.00 35.39 2.57
186 187 3.119101 GGAAGGCGAATAGTGAGTCTTCA 60.119 47.826 10.52 0.00 33.07 3.02
187 188 3.449632 GGAAGGCGAATAGTGAGTCTTC 58.550 50.000 0.92 0.92 0.00 2.87
188 189 2.159226 CGGAAGGCGAATAGTGAGTCTT 60.159 50.000 0.00 0.00 0.00 3.01
189 190 1.405821 CGGAAGGCGAATAGTGAGTCT 59.594 52.381 0.00 0.00 0.00 3.24
190 191 1.841450 CGGAAGGCGAATAGTGAGTC 58.159 55.000 0.00 0.00 0.00 3.36
191 192 0.179108 GCGGAAGGCGAATAGTGAGT 60.179 55.000 0.00 0.00 0.00 3.41
192 193 2.594541 GCGGAAGGCGAATAGTGAG 58.405 57.895 0.00 0.00 0.00 3.51
193 194 4.827481 GCGGAAGGCGAATAGTGA 57.173 55.556 0.00 0.00 0.00 3.41
202 203 2.407428 GCCTGGTTAAGCGGAAGGC 61.407 63.158 16.05 16.05 46.04 4.35
203 204 3.905249 GCCTGGTTAAGCGGAAGG 58.095 61.111 15.09 9.81 0.00 3.46
209 210 1.398390 CACATCTTCGCCTGGTTAAGC 59.602 52.381 0.00 0.00 0.00 3.09
210 211 2.932614 CTCACATCTTCGCCTGGTTAAG 59.067 50.000 0.00 0.00 0.00 1.85
211 212 2.935238 GCTCACATCTTCGCCTGGTTAA 60.935 50.000 0.00 0.00 0.00 2.01
212 213 1.405526 GCTCACATCTTCGCCTGGTTA 60.406 52.381 0.00 0.00 0.00 2.85
213 214 0.674895 GCTCACATCTTCGCCTGGTT 60.675 55.000 0.00 0.00 0.00 3.67
214 215 1.078848 GCTCACATCTTCGCCTGGT 60.079 57.895 0.00 0.00 0.00 4.00
215 216 2.169789 CGCTCACATCTTCGCCTGG 61.170 63.158 0.00 0.00 0.00 4.45
216 217 2.169789 CCGCTCACATCTTCGCCTG 61.170 63.158 0.00 0.00 0.00 4.85
228 229 2.863019 CTTCTCCTCCTCCCCGCTCA 62.863 65.000 0.00 0.00 0.00 4.26
258 259 1.022451 TTGTCATAAACGAGGGCCGC 61.022 55.000 0.00 0.00 43.32 6.53
296 297 4.821589 CCCAAGAGACGCCGGAGC 62.822 72.222 5.05 0.00 0.00 4.70
297 298 4.148825 CCCCAAGAGACGCCGGAG 62.149 72.222 5.05 3.72 0.00 4.63
300 301 4.821589 GAGCCCCAAGAGACGCCG 62.822 72.222 0.00 0.00 0.00 6.46
301 302 4.821589 CGAGCCCCAAGAGACGCC 62.822 72.222 0.00 0.00 0.00 5.68
302 303 4.821589 CCGAGCCCCAAGAGACGC 62.822 72.222 0.00 0.00 0.00 5.19
303 304 4.821589 GCCGAGCCCCAAGAGACG 62.822 72.222 0.00 0.00 0.00 4.18
304 305 4.475135 GGCCGAGCCCCAAGAGAC 62.475 72.222 3.73 0.00 44.06 3.36
385 386 5.333263 GGAAACGATTTTGGCATGAAAACTG 60.333 40.000 0.00 0.00 0.00 3.16
393 394 3.378427 GCTAGAGGAAACGATTTTGGCAT 59.622 43.478 0.00 0.00 0.00 4.40
394 395 2.747446 GCTAGAGGAAACGATTTTGGCA 59.253 45.455 0.00 0.00 0.00 4.92
396 397 2.223044 GCGCTAGAGGAAACGATTTTGG 60.223 50.000 0.00 0.00 0.00 3.28
410 411 4.221422 GCATCCGGTGGCGCTAGA 62.221 66.667 7.64 0.00 0.00 2.43
453 454 2.048312 GAAATTAGCGCTGGCGGACC 62.048 60.000 22.90 0.00 46.35 4.46
454 455 1.352056 GAAATTAGCGCTGGCGGAC 59.648 57.895 22.90 3.30 46.35 4.79
456 457 2.324477 CGAAATTAGCGCTGGCGG 59.676 61.111 22.90 0.00 46.35 6.13
459 460 2.715624 GGCCGAAATTAGCGCTGG 59.284 61.111 22.90 12.95 0.00 4.85
461 462 2.590092 AGGGCCGAAATTAGCGCT 59.410 55.556 17.26 17.26 46.26 5.92
475 476 1.944709 CCTAAATTTCGCCGGTTAGGG 59.055 52.381 15.38 0.18 39.21 3.53
484 485 3.010420 ACTCCAGAAGCCTAAATTTCGC 58.990 45.455 0.00 0.00 0.00 4.70
499 500 2.892425 GCCCAATCGCGACTCCAG 60.892 66.667 12.93 0.00 0.00 3.86
503 504 0.965363 AAATTGGCCCAATCGCGACT 60.965 50.000 12.93 0.00 32.43 4.18
504 505 0.108851 AAAATTGGCCCAATCGCGAC 60.109 50.000 12.93 0.00 32.43 5.19
505 506 0.605589 AAAAATTGGCCCAATCGCGA 59.394 45.000 13.09 13.09 32.43 5.87
527 528 0.605589 CACTCGAGACTCCTTGGCTT 59.394 55.000 21.68 0.00 31.30 4.35
536 546 1.668294 CAACTGGCCACTCGAGACT 59.332 57.895 21.68 0.00 0.00 3.24
545 555 3.508786 TAGGTCCCCCAACTGGCCA 62.509 63.158 4.71 4.71 0.00 5.36
550 560 0.195096 TTCCACTAGGTCCCCCAACT 59.805 55.000 0.00 0.00 35.89 3.16
559 569 4.624125 GCACTAAGAGCATTTCCACTAGGT 60.624 45.833 0.00 0.00 35.89 3.08
562 572 4.826274 AGCACTAAGAGCATTTCCACTA 57.174 40.909 0.00 0.00 0.00 2.74
569 579 8.778358 GCATTAGTATTTAGCACTAAGAGCATT 58.222 33.333 13.24 0.00 40.73 3.56
590 600 2.239654 CTCCAAACCAGAGGAGGCATTA 59.760 50.000 0.00 0.00 46.11 1.90
591 601 1.005215 CTCCAAACCAGAGGAGGCATT 59.995 52.381 0.00 0.00 46.11 3.56
592 602 0.622665 CTCCAAACCAGAGGAGGCAT 59.377 55.000 0.00 0.00 46.11 4.40
599 609 5.649831 CCTAAGAAATTCCTCCAAACCAGAG 59.350 44.000 0.00 0.00 0.00 3.35
600 610 5.312178 TCCTAAGAAATTCCTCCAAACCAGA 59.688 40.000 0.00 0.00 0.00 3.86
601 611 5.570320 TCCTAAGAAATTCCTCCAAACCAG 58.430 41.667 0.00 0.00 0.00 4.00
602 612 5.592587 TCCTAAGAAATTCCTCCAAACCA 57.407 39.130 0.00 0.00 0.00 3.67
603 613 7.482169 AATTCCTAAGAAATTCCTCCAAACC 57.518 36.000 0.00 0.00 35.09 3.27
604 614 8.585018 TGAAATTCCTAAGAAATTCCTCCAAAC 58.415 33.333 0.48 0.00 39.99 2.93
605 615 8.719645 TGAAATTCCTAAGAAATTCCTCCAAA 57.280 30.769 0.48 0.00 39.99 3.28
606 616 8.899887 ATGAAATTCCTAAGAAATTCCTCCAA 57.100 30.769 0.48 0.00 39.99 3.53
607 617 9.632638 CTATGAAATTCCTAAGAAATTCCTCCA 57.367 33.333 0.48 0.00 39.99 3.86
608 618 9.072375 CCTATGAAATTCCTAAGAAATTCCTCC 57.928 37.037 0.48 0.00 39.99 4.30
609 619 9.072375 CCCTATGAAATTCCTAAGAAATTCCTC 57.928 37.037 0.48 0.00 39.99 3.71
610 620 8.569596 ACCCTATGAAATTCCTAAGAAATTCCT 58.430 33.333 0.48 0.00 39.99 3.36
611 621 8.768501 ACCCTATGAAATTCCTAAGAAATTCC 57.231 34.615 0.48 0.00 39.99 3.01
613 623 9.868160 CCTACCCTATGAAATTCCTAAGAAATT 57.132 33.333 0.00 0.00 35.09 1.82
614 624 9.237706 TCCTACCCTATGAAATTCCTAAGAAAT 57.762 33.333 0.00 0.00 35.09 2.17
615 625 8.632731 TCCTACCCTATGAAATTCCTAAGAAA 57.367 34.615 0.00 0.00 35.09 2.52
616 626 8.814448 ATCCTACCCTATGAAATTCCTAAGAA 57.186 34.615 0.00 0.00 36.15 2.52
617 627 8.814448 AATCCTACCCTATGAAATTCCTAAGA 57.186 34.615 0.00 0.00 0.00 2.10
618 628 9.868160 AAAATCCTACCCTATGAAATTCCTAAG 57.132 33.333 0.00 0.00 0.00 2.18
656 666 9.656323 TCCTATAAACAAAGAGCTCTATAGGAA 57.344 33.333 31.14 21.22 41.92 3.36
657 667 9.656323 TTCCTATAAACAAAGAGCTCTATAGGA 57.344 33.333 30.31 30.31 42.61 2.94
661 671 8.938883 TCCATTCCTATAAACAAAGAGCTCTAT 58.061 33.333 18.59 8.20 0.00 1.98
662 672 8.319057 TCCATTCCTATAAACAAAGAGCTCTA 57.681 34.615 18.59 0.00 0.00 2.43
663 673 7.200434 TCCATTCCTATAAACAAAGAGCTCT 57.800 36.000 11.45 11.45 0.00 4.09
664 674 7.865706 TTCCATTCCTATAAACAAAGAGCTC 57.134 36.000 5.27 5.27 0.00 4.09
665 675 7.503902 GGATTCCATTCCTATAAACAAAGAGCT 59.496 37.037 0.00 0.00 32.68 4.09
666 676 7.503902 AGGATTCCATTCCTATAAACAAAGAGC 59.496 37.037 5.29 0.00 44.50 4.09
667 677 8.986929 AGGATTCCATTCCTATAAACAAAGAG 57.013 34.615 5.29 0.00 44.50 2.85
678 688 8.486942 TTCGTAGAAATAGGATTCCATTCCTA 57.513 34.615 5.29 2.86 46.66 2.94
679 689 7.290248 TCTTCGTAGAAATAGGATTCCATTCCT 59.710 37.037 5.29 0.00 45.65 3.36
680 690 7.442656 TCTTCGTAGAAATAGGATTCCATTCC 58.557 38.462 5.29 0.00 45.90 3.01
681 691 8.888579 TTCTTCGTAGAAATAGGATTCCATTC 57.111 34.615 5.29 6.63 45.90 2.67
682 692 9.681062 TTTTCTTCGTAGAAATAGGATTCCATT 57.319 29.630 16.59 0.40 46.73 3.16
683 693 9.853177 ATTTTCTTCGTAGAAATAGGATTCCAT 57.147 29.630 16.59 3.12 46.73 3.41
684 694 9.326413 GATTTTCTTCGTAGAAATAGGATTCCA 57.674 33.333 16.59 0.99 46.73 3.53
685 695 9.549078 AGATTTTCTTCGTAGAAATAGGATTCC 57.451 33.333 16.59 0.00 46.73 3.01
702 712 6.642733 TGTGGAGGATAGGAAGATTTTCTT 57.357 37.500 0.00 0.00 39.87 2.52
703 713 6.838401 ATGTGGAGGATAGGAAGATTTTCT 57.162 37.500 0.00 0.00 33.68 2.52
704 714 7.888250 AAATGTGGAGGATAGGAAGATTTTC 57.112 36.000 0.00 0.00 0.00 2.29
705 715 9.942526 ATAAAATGTGGAGGATAGGAAGATTTT 57.057 29.630 0.00 0.00 31.28 1.82
708 718 9.621239 TCTATAAAATGTGGAGGATAGGAAGAT 57.379 33.333 0.00 0.00 0.00 2.40
709 719 9.447279 TTCTATAAAATGTGGAGGATAGGAAGA 57.553 33.333 0.00 0.00 0.00 2.87
732 742 9.431887 TGAGTCTACGCTAATGTTTATTTTTCT 57.568 29.630 0.00 0.00 0.00 2.52
735 745 9.988350 CATTGAGTCTACGCTAATGTTTATTTT 57.012 29.630 0.00 0.00 0.00 1.82
736 746 9.378551 TCATTGAGTCTACGCTAATGTTTATTT 57.621 29.630 0.00 0.00 32.22 1.40
737 747 8.942338 TCATTGAGTCTACGCTAATGTTTATT 57.058 30.769 0.00 0.00 32.22 1.40
738 748 8.942338 TTCATTGAGTCTACGCTAATGTTTAT 57.058 30.769 0.00 0.00 32.22 1.40
739 749 8.766000 TTTCATTGAGTCTACGCTAATGTTTA 57.234 30.769 0.00 0.00 32.22 2.01
740 750 7.667043 TTTCATTGAGTCTACGCTAATGTTT 57.333 32.000 0.00 0.00 32.22 2.83
741 751 7.667043 TTTTCATTGAGTCTACGCTAATGTT 57.333 32.000 0.00 0.00 32.22 2.71
742 752 7.667043 TTTTTCATTGAGTCTACGCTAATGT 57.333 32.000 0.00 0.00 32.22 2.71
765 775 9.710900 GTCCTTTGTTTTTCATCATAGGATTTT 57.289 29.630 7.39 0.00 41.26 1.82
766 776 8.869109 TGTCCTTTGTTTTTCATCATAGGATTT 58.131 29.630 7.39 0.00 41.26 2.17
767 777 8.421249 TGTCCTTTGTTTTTCATCATAGGATT 57.579 30.769 7.39 0.00 41.26 3.01
768 778 8.599624 ATGTCCTTTGTTTTTCATCATAGGAT 57.400 30.769 7.39 0.00 41.26 3.24
769 779 7.890127 AGATGTCCTTTGTTTTTCATCATAGGA 59.110 33.333 0.00 0.00 38.66 2.94
770 780 8.059798 AGATGTCCTTTGTTTTTCATCATAGG 57.940 34.615 0.00 0.00 35.56 2.57
771 781 8.186821 GGAGATGTCCTTTGTTTTTCATCATAG 58.813 37.037 0.54 0.00 40.17 2.23
772 782 8.055279 GGAGATGTCCTTTGTTTTTCATCATA 57.945 34.615 0.54 0.00 40.17 2.15
773 783 6.928520 GGAGATGTCCTTTGTTTTTCATCAT 58.071 36.000 0.54 0.00 40.17 2.45
774 784 6.331369 GGAGATGTCCTTTGTTTTTCATCA 57.669 37.500 0.54 0.00 40.17 3.07
802 812 9.622004 GACATGCATTTCAAATCCTATGAATAG 57.378 33.333 7.98 0.00 36.72 1.73
803 813 9.134055 TGACATGCATTTCAAATCCTATGAATA 57.866 29.630 13.07 0.00 36.72 1.75
804 814 8.014070 TGACATGCATTTCAAATCCTATGAAT 57.986 30.769 13.07 0.00 36.72 2.57
805 815 7.407393 TGACATGCATTTCAAATCCTATGAA 57.593 32.000 13.07 0.00 35.11 2.57
806 816 7.504574 AGATGACATGCATTTCAAATCCTATGA 59.495 33.333 18.83 0.00 37.34 2.15
807 817 7.658261 AGATGACATGCATTTCAAATCCTATG 58.342 34.615 18.83 0.00 37.34 2.23
808 818 7.834881 AGATGACATGCATTTCAAATCCTAT 57.165 32.000 18.83 1.26 37.34 2.57
809 819 7.649533 AAGATGACATGCATTTCAAATCCTA 57.350 32.000 18.83 0.00 37.34 2.94
810 820 6.540438 AAGATGACATGCATTTCAAATCCT 57.460 33.333 18.83 10.90 37.34 3.24
811 821 8.882415 AATAAGATGACATGCATTTCAAATCC 57.118 30.769 18.83 9.07 37.34 3.01
814 824 9.932207 AGAAAATAAGATGACATGCATTTCAAA 57.068 25.926 18.83 6.37 37.34 2.69
820 830 9.570468 AGTCATAGAAAATAAGATGACATGCAT 57.430 29.630 14.37 0.00 46.94 3.96
821 831 8.969260 AGTCATAGAAAATAAGATGACATGCA 57.031 30.769 14.37 0.00 46.94 3.96
860 870 9.768215 TCCTTTGGTTCATAGGATAGAAAAATT 57.232 29.630 3.54 0.00 36.84 1.82
861 871 9.413734 CTCCTTTGGTTCATAGGATAGAAAAAT 57.586 33.333 7.38 0.00 39.94 1.82
862 872 7.834181 CCTCCTTTGGTTCATAGGATAGAAAAA 59.166 37.037 7.38 0.00 39.94 1.94
863 873 7.346471 CCTCCTTTGGTTCATAGGATAGAAAA 58.654 38.462 7.38 0.00 39.94 2.29
864 874 6.634955 GCCTCCTTTGGTTCATAGGATAGAAA 60.635 42.308 7.38 0.00 39.94 2.52
865 875 5.163195 GCCTCCTTTGGTTCATAGGATAGAA 60.163 44.000 7.38 0.00 39.94 2.10
866 876 4.348168 GCCTCCTTTGGTTCATAGGATAGA 59.652 45.833 7.38 0.00 39.94 1.98
867 877 4.505742 GGCCTCCTTTGGTTCATAGGATAG 60.506 50.000 0.00 4.66 39.94 2.08
868 878 3.394606 GGCCTCCTTTGGTTCATAGGATA 59.605 47.826 0.00 0.00 39.94 2.59
869 879 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
870 880 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
871 881 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
872 882 3.181450 CCTAGGCCTCCTTTGGTTCATAG 60.181 52.174 9.68 0.00 34.61 2.23
873 883 2.777692 CCTAGGCCTCCTTTGGTTCATA 59.222 50.000 9.68 0.00 34.61 2.15
874 884 1.566231 CCTAGGCCTCCTTTGGTTCAT 59.434 52.381 9.68 0.00 34.61 2.57
875 885 0.991920 CCTAGGCCTCCTTTGGTTCA 59.008 55.000 9.68 0.00 34.61 3.18
876 886 0.992695 ACCTAGGCCTCCTTTGGTTC 59.007 55.000 9.68 0.00 36.41 3.62
877 887 1.456919 AACCTAGGCCTCCTTTGGTT 58.543 50.000 9.68 14.38 41.13 3.67
878 888 1.456919 AAACCTAGGCCTCCTTTGGT 58.543 50.000 9.68 8.58 39.60 3.67
879 889 2.604912 AAAACCTAGGCCTCCTTTGG 57.395 50.000 9.68 7.86 34.61 3.28
880 890 2.488153 CGAAAAACCTAGGCCTCCTTTG 59.512 50.000 9.68 0.00 34.61 2.77
881 891 2.554564 CCGAAAAACCTAGGCCTCCTTT 60.555 50.000 9.68 1.95 34.61 3.11
882 892 1.004394 CCGAAAAACCTAGGCCTCCTT 59.996 52.381 9.68 0.00 34.61 3.36
883 893 0.618981 CCGAAAAACCTAGGCCTCCT 59.381 55.000 9.68 0.00 37.71 3.69
884 894 0.616891 TCCGAAAAACCTAGGCCTCC 59.383 55.000 9.68 0.00 0.00 4.30
885 895 1.002773 TGTCCGAAAAACCTAGGCCTC 59.997 52.381 9.68 0.00 0.00 4.70
886 896 1.003233 CTGTCCGAAAAACCTAGGCCT 59.997 52.381 11.78 11.78 0.00 5.19
887 897 1.002773 TCTGTCCGAAAAACCTAGGCC 59.997 52.381 9.30 0.00 0.00 5.19
888 898 2.347731 CTCTGTCCGAAAAACCTAGGC 58.652 52.381 9.30 0.00 0.00 3.93
889 899 2.354805 CCCTCTGTCCGAAAAACCTAGG 60.355 54.545 7.41 7.41 0.00 3.02
890 900 2.565834 TCCCTCTGTCCGAAAAACCTAG 59.434 50.000 0.00 0.00 0.00 3.02
891 901 2.565834 CTCCCTCTGTCCGAAAAACCTA 59.434 50.000 0.00 0.00 0.00 3.08
892 902 1.348036 CTCCCTCTGTCCGAAAAACCT 59.652 52.381 0.00 0.00 0.00 3.50
893 903 1.071857 ACTCCCTCTGTCCGAAAAACC 59.928 52.381 0.00 0.00 0.00 3.27
894 904 2.545537 ACTCCCTCTGTCCGAAAAAC 57.454 50.000 0.00 0.00 0.00 2.43
902 912 2.025898 GCAGGTAGTACTCCCTCTGTC 58.974 57.143 3.56 0.35 0.00 3.51
904 914 2.445682 AGCAGGTAGTACTCCCTCTG 57.554 55.000 3.56 7.10 0.00 3.35
905 915 3.476485 AAAGCAGGTAGTACTCCCTCT 57.524 47.619 3.56 2.67 0.00 3.69
906 916 4.439837 CGTAAAAGCAGGTAGTACTCCCTC 60.440 50.000 3.56 0.33 0.00 4.30
922 932 2.121009 CCACGGGCAAAAACGTAAAAG 58.879 47.619 0.00 0.00 42.04 2.27
1264 1502 1.944177 TGGAGAACCAGGAGAAGAGG 58.056 55.000 0.00 0.00 41.77 3.69
1311 1549 1.110442 CGGCTGATGGAGAAGAGAGT 58.890 55.000 0.00 0.00 0.00 3.24
1344 1582 5.163301 GCTCTCTCTCTCTCTCCTTTCTCTA 60.163 48.000 0.00 0.00 0.00 2.43
1370 1618 0.465642 GTAATCTCCCCTTTGCCCCG 60.466 60.000 0.00 0.00 0.00 5.73
1463 1711 5.367060 CCCTATAAGGCTCTTCTACTTTGGT 59.633 44.000 0.00 0.00 32.73 3.67
1464 1712 5.859495 CCCTATAAGGCTCTTCTACTTTGG 58.141 45.833 0.00 0.00 32.73 3.28
1495 1743 2.799978 CAAAACGAAATGCCCCACTTTC 59.200 45.455 0.00 0.00 0.00 2.62
1516 1764 1.925185 GACGAACTCGGGCTATTTGAC 59.075 52.381 3.88 0.00 44.95 3.18
1725 1979 1.825090 CCTTTGCTACTGCCATGACA 58.175 50.000 0.00 0.00 38.71 3.58
1858 2115 7.515841 CGAACAGAATCTTTATCATCCGAACAG 60.516 40.741 0.00 0.00 0.00 3.16
1860 2117 6.255887 ACGAACAGAATCTTTATCATCCGAAC 59.744 38.462 0.00 0.00 0.00 3.95
1974 2234 9.431887 GGAACTACTGAACAATGTATTACTGAA 57.568 33.333 0.00 0.00 0.00 3.02
2010 2270 7.664731 GTGAGATGAGGATGATAATTTCCATGT 59.335 37.037 0.00 0.00 34.27 3.21
2147 2414 3.670359 GCATTGCAACATTTACTCAGCGA 60.670 43.478 0.00 0.00 0.00 4.93
2247 2521 6.974932 AAAGTAGATGTTGATGCAGTACAG 57.025 37.500 0.00 0.00 0.00 2.74
2252 2526 6.744537 GCTTGTTAAAGTAGATGTTGATGCAG 59.255 38.462 0.00 0.00 35.69 4.41
2259 2533 9.869757 AAAAAGTTGCTTGTTAAAGTAGATGTT 57.130 25.926 0.00 0.00 35.69 2.71
2264 2538 7.435192 CCAGGAAAAAGTTGCTTGTTAAAGTAG 59.565 37.037 0.00 0.00 32.21 2.57
2370 2674 6.835488 ACCATAAAGGCATATGTTCAAGACAT 59.165 34.615 4.29 0.00 46.09 3.06
2419 2723 7.441017 ACCTAGAGCAATCTTGTCATTAGATC 58.559 38.462 0.00 0.00 31.28 2.75
2528 2837 3.381272 CCTTCCTTGTGTTGTGTGTTGAT 59.619 43.478 0.00 0.00 0.00 2.57
2672 2981 5.394883 GGAGTTACATCGTAAACCTGGATCA 60.395 44.000 0.00 0.00 0.00 2.92
2875 3184 4.854399 TCAAAAGGTGCAGTAAATGAACG 58.146 39.130 0.00 0.00 38.52 3.95
2929 3238 4.728772 ACCATCCAGACAAAAAGATCACA 58.271 39.130 0.00 0.00 0.00 3.58
3145 3454 1.301087 TGCCTTTGCATGCTGTTGC 60.301 52.632 20.33 16.24 44.23 4.17
3229 3538 8.133024 TGGGCACTATTCAAGATAACAAAATT 57.867 30.769 0.00 0.00 0.00 1.82
3389 3705 7.344093 TGGACCATCCATCATCTAGATCTATTC 59.656 40.741 1.03 0.00 42.67 1.75
3707 4031 1.557371 GCTTTTACAGCCTCTCCTCCT 59.443 52.381 0.00 0.00 43.65 3.69
3764 4089 0.881600 TCGTCGTCGTCACCTTCAGA 60.882 55.000 1.33 0.00 38.33 3.27
3771 4096 0.155422 GTTTCGTTCGTCGTCGTCAC 59.845 55.000 1.33 0.01 40.80 3.67
3834 4160 3.066064 TCAAACATGAAACCAGAACCACG 59.934 43.478 0.00 0.00 0.00 4.94
3883 4209 1.072332 CCATGGTCGGGTCACACAA 59.928 57.895 2.57 0.00 0.00 3.33
4019 4345 6.798482 TCATTGTCATGCAAGGAATCAATAC 58.202 36.000 12.57 0.00 43.74 1.89
4040 4366 5.557576 TGAATGTATAGCAAGCCTCTCAT 57.442 39.130 0.00 0.00 0.00 2.90
4051 4377 7.543520 AGCAAAAGCTTTCTTTGAATGTATAGC 59.456 33.333 13.10 0.00 41.40 2.97
4052 4378 8.976986 AGCAAAAGCTTTCTTTGAATGTATAG 57.023 30.769 13.10 0.00 41.40 1.31
4053 4379 8.575589 TGAGCAAAAGCTTTCTTTGAATGTATA 58.424 29.630 13.10 0.00 41.40 1.47
4054 4380 7.436118 TGAGCAAAAGCTTTCTTTGAATGTAT 58.564 30.769 13.10 0.00 41.40 2.29
4055 4381 6.804677 TGAGCAAAAGCTTTCTTTGAATGTA 58.195 32.000 13.10 0.00 41.40 2.29
4056 4382 5.663456 TGAGCAAAAGCTTTCTTTGAATGT 58.337 33.333 13.10 0.00 41.40 2.71
4103 4429 5.357878 AGTGTGAAATTCTTTGACAGCTGAA 59.642 36.000 23.35 5.08 37.44 3.02
4136 4462 1.087771 GTTCATACGTTGCCCCCTCG 61.088 60.000 0.00 0.00 0.00 4.63
4137 4463 0.252197 AGTTCATACGTTGCCCCCTC 59.748 55.000 0.00 0.00 0.00 4.30
4149 4475 7.496920 CAGTATGAGCCAGATGAAAAGTTCATA 59.503 37.037 3.53 0.00 45.13 2.15
4150 4476 6.318144 CAGTATGAGCCAGATGAAAAGTTCAT 59.682 38.462 3.17 3.17 46.93 2.57
4151 4477 5.645067 CAGTATGAGCCAGATGAAAAGTTCA 59.355 40.000 0.00 0.00 41.31 3.18
4152 4478 5.645497 ACAGTATGAGCCAGATGAAAAGTTC 59.355 40.000 0.00 0.00 39.69 3.01
4153 4479 5.564550 ACAGTATGAGCCAGATGAAAAGTT 58.435 37.500 0.00 0.00 39.69 2.66
4155 4481 4.574013 GGACAGTATGAGCCAGATGAAAAG 59.426 45.833 0.00 0.00 39.69 2.27
4238 4565 4.201647 CGCAAATAAGCCAGCAAAATGAAG 60.202 41.667 0.00 0.00 0.00 3.02
4274 4601 4.855531 ACGAATCCTTTTGTTACACTTGC 58.144 39.130 0.00 0.00 0.00 4.01
4279 4606 8.812329 CAAAATCAAACGAATCCTTTTGTTACA 58.188 29.630 0.00 0.00 38.29 2.41
4299 4626 6.749118 GGAATAATCAGCTGTGACACAAAATC 59.251 38.462 14.67 0.00 34.75 2.17
4304 4631 4.558226 AGGAATAATCAGCTGTGACACA 57.442 40.909 14.67 8.26 34.75 3.72
4333 4660 6.927381 AGAATGCCACTCTTCAAATCAAAAAG 59.073 34.615 0.00 0.00 0.00 2.27
4335 4662 6.409524 AGAATGCCACTCTTCAAATCAAAA 57.590 33.333 0.00 0.00 0.00 2.44
4337 4664 6.660521 ACATAGAATGCCACTCTTCAAATCAA 59.339 34.615 0.00 0.00 0.00 2.57
4339 4666 6.238593 GGACATAGAATGCCACTCTTCAAATC 60.239 42.308 0.00 0.00 0.00 2.17
4340 4667 5.591877 GGACATAGAATGCCACTCTTCAAAT 59.408 40.000 0.00 0.00 0.00 2.32
4418 4745 3.365220 GTGTTCTGCATCTCGTACAGTTC 59.635 47.826 0.00 0.00 33.12 3.01
4421 4748 2.263077 GGTGTTCTGCATCTCGTACAG 58.737 52.381 0.00 0.00 0.00 2.74
4538 4865 5.248380 AGGACATAAGATTATTGCCTCCC 57.752 43.478 0.00 0.00 0.00 4.30
4567 5156 0.972134 TCTTCCTCAGTGCAGGTCTG 59.028 55.000 8.05 0.00 34.76 3.51
4569 5158 1.346068 AGTTCTTCCTCAGTGCAGGTC 59.654 52.381 8.05 0.00 34.76 3.85
4572 5161 1.805869 CCAGTTCTTCCTCAGTGCAG 58.194 55.000 0.00 0.00 0.00 4.41
4575 5164 0.034059 ACGCCAGTTCTTCCTCAGTG 59.966 55.000 0.00 0.00 0.00 3.66
4655 5265 7.456725 AGATGTTTGAAAAGAGAAGATGAGGA 58.543 34.615 0.00 0.00 0.00 3.71
4656 5266 7.389884 TGAGATGTTTGAAAAGAGAAGATGAGG 59.610 37.037 0.00 0.00 0.00 3.86
4659 5269 7.485277 GCATGAGATGTTTGAAAAGAGAAGATG 59.515 37.037 0.00 0.00 0.00 2.90
4660 5270 7.362747 GGCATGAGATGTTTGAAAAGAGAAGAT 60.363 37.037 0.00 0.00 0.00 2.40
4663 5273 5.535783 TGGCATGAGATGTTTGAAAAGAGAA 59.464 36.000 0.00 0.00 0.00 2.87
4671 5307 4.456911 GTCTTCTTGGCATGAGATGTTTGA 59.543 41.667 0.00 0.00 0.00 2.69
4686 5322 3.797256 ACTTCGACGTTTCTGTCTTCTTG 59.203 43.478 0.00 0.00 36.71 3.02
4693 5329 4.147653 CGTCAATAACTTCGACGTTTCTGT 59.852 41.667 12.88 0.00 45.59 3.41
4710 5346 1.880027 GTTTCTGCCTTGGACGTCAAT 59.120 47.619 18.91 0.00 34.45 2.57
4720 5356 1.597663 CAACTTCGACGTTTCTGCCTT 59.402 47.619 4.29 0.00 0.00 4.35
4721 5357 1.217882 CAACTTCGACGTTTCTGCCT 58.782 50.000 4.29 0.00 0.00 4.75
4722 5358 0.935196 ACAACTTCGACGTTTCTGCC 59.065 50.000 4.29 0.00 0.00 4.85
4723 5359 2.732001 AACAACTTCGACGTTTCTGC 57.268 45.000 4.29 0.00 0.00 4.26
4724 5360 4.191161 CGTTAACAACTTCGACGTTTCTG 58.809 43.478 4.29 0.00 0.00 3.02
4725 5361 3.859386 ACGTTAACAACTTCGACGTTTCT 59.141 39.130 4.29 0.00 43.53 2.52
4726 5362 4.168792 ACGTTAACAACTTCGACGTTTC 57.831 40.909 4.29 0.00 43.53 2.78
4727 5363 3.000222 GGACGTTAACAACTTCGACGTTT 60.000 43.478 4.29 0.00 45.66 3.60
4728 5364 2.535574 GGACGTTAACAACTTCGACGTT 59.464 45.455 6.39 0.74 45.66 3.99
4736 5372 2.158871 TCTGCCTTGGACGTTAACAACT 60.159 45.455 6.39 0.00 0.00 3.16
4769 5405 1.628340 ACACATTCCAGTCCGATTGGA 59.372 47.619 8.51 8.51 42.81 3.53
4773 5409 3.133003 CCTTCTACACATTCCAGTCCGAT 59.867 47.826 0.00 0.00 0.00 4.18
4775 5411 2.893637 CCTTCTACACATTCCAGTCCG 58.106 52.381 0.00 0.00 0.00 4.79
4778 5414 2.616510 GCTGCCTTCTACACATTCCAGT 60.617 50.000 0.00 0.00 0.00 4.00
4779 5415 2.012673 GCTGCCTTCTACACATTCCAG 58.987 52.381 0.00 0.00 0.00 3.86
4780 5416 1.340017 GGCTGCCTTCTACACATTCCA 60.340 52.381 12.43 0.00 0.00 3.53
4781 5417 1.065126 AGGCTGCCTTCTACACATTCC 60.065 52.381 17.22 0.00 0.00 3.01
4782 5418 2.284190 GAGGCTGCCTTCTACACATTC 58.716 52.381 24.26 1.75 31.76 2.67
4783 5419 1.065126 GGAGGCTGCCTTCTACACATT 60.065 52.381 24.26 0.00 31.76 2.71
4784 5420 0.543749 GGAGGCTGCCTTCTACACAT 59.456 55.000 24.26 0.00 31.76 3.21
4785 5421 0.545309 AGGAGGCTGCCTTCTACACA 60.545 55.000 28.17 0.00 37.79 3.72
4786 5422 0.176910 GAGGAGGCTGCCTTCTACAC 59.823 60.000 29.21 13.68 40.10 2.90
4787 5423 0.978146 GGAGGAGGCTGCCTTCTACA 60.978 60.000 30.87 0.00 40.10 2.74
4788 5424 1.826709 GGAGGAGGCTGCCTTCTAC 59.173 63.158 29.21 26.32 40.10 2.59
4789 5425 1.758514 CGGAGGAGGCTGCCTTCTA 60.759 63.158 29.21 0.00 40.10 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.