Multiple sequence alignment - TraesCS5D01G190800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G190800 chr5D 100.000 3960 0 0 1 3960 293162178 293166137 0.000000e+00 7313.0
1 TraesCS5D01G190800 chr5D 81.481 513 61 20 2050 2531 293096343 293096852 1.330000e-104 390.0
2 TraesCS5D01G190800 chr5D 78.464 534 83 18 1190 1698 293095574 293096100 1.780000e-83 320.0
3 TraesCS5D01G190800 chr5A 89.702 2146 147 40 1857 3960 386163162 386165275 0.000000e+00 2671.0
4 TraesCS5D01G190800 chr5A 87.477 1070 45 30 737 1774 386161932 386162944 0.000000e+00 1151.0
5 TraesCS5D01G190800 chr5A 82.340 470 57 12 2087 2531 385956230 385956698 6.210000e-103 385.0
6 TraesCS5D01G190800 chr5A 78.695 521 91 15 1190 1698 385955429 385955941 2.950000e-86 329.0
7 TraesCS5D01G190800 chr5A 94.521 73 3 1 1797 1869 386162943 386163014 1.160000e-20 111.0
8 TraesCS5D01G190800 chr5B 92.905 1649 78 17 1101 2735 334682704 334684327 0.000000e+00 2361.0
9 TraesCS5D01G190800 chr5B 92.705 1083 46 14 2880 3960 334684778 334685829 0.000000e+00 1531.0
10 TraesCS5D01G190800 chr5B 84.774 532 54 15 1 524 334681524 334682036 3.530000e-140 508.0
11 TraesCS5D01G190800 chr5B 82.794 494 57 15 2060 2531 334594315 334594802 2.200000e-112 416.0
12 TraesCS5D01G190800 chr5B 94.977 219 8 1 736 954 334682030 334682245 1.360000e-89 340.0
13 TraesCS5D01G190800 chr5B 78.612 533 80 20 1190 1695 334593533 334594058 4.940000e-84 322.0
14 TraesCS5D01G190800 chr4D 88.337 403 39 4 3532 3933 506092032 506091637 9.960000e-131 477.0
15 TraesCS5D01G190800 chr6D 88.089 403 40 4 3532 3933 413021400 413021005 4.630000e-129 472.0
16 TraesCS5D01G190800 chr6D 86.849 403 38 5 3532 3933 25491086 25490698 1.690000e-118 436.0
17 TraesCS5D01G190800 chr6D 88.235 102 5 5 3015 3116 168252816 168252910 8.990000e-22 115.0
18 TraesCS5D01G190800 chr6D 88.235 102 5 4 3015 3116 168253874 168253780 8.990000e-22 115.0
19 TraesCS5D01G190800 chr6D 88.235 102 5 4 3015 3116 429818704 429818610 8.990000e-22 115.0
20 TraesCS5D01G190800 chr6A 86.634 404 44 6 3532 3933 594276095 594275700 4.700000e-119 438.0
21 TraesCS5D01G190800 chr3A 86.634 404 44 6 3532 3933 479686454 479686059 4.700000e-119 438.0
22 TraesCS5D01G190800 chr7A 86.634 404 43 6 3529 3930 32950844 32951238 1.690000e-118 436.0
23 TraesCS5D01G190800 chr7A 88.571 70 7 1 1624 1692 74159824 74159893 2.540000e-12 84.2
24 TraesCS5D01G190800 chr4A 88.667 300 26 3 3638 3933 648977024 648976729 3.760000e-95 359.0
25 TraesCS5D01G190800 chr2B 81.081 185 32 3 546 728 359392554 359392737 1.150000e-30 145.0
26 TraesCS5D01G190800 chr2D 88.350 103 5 4 3015 3116 322927157 322927253 2.500000e-22 117.0
27 TraesCS5D01G190800 chrUn 88.235 102 5 4 3015 3116 93410682 93410776 8.990000e-22 115.0
28 TraesCS5D01G190800 chrUn 88.235 102 5 4 3015 3116 396206412 396206506 8.990000e-22 115.0
29 TraesCS5D01G190800 chr1A 88.235 102 5 4 3015 3116 554511204 554511110 8.990000e-22 115.0
30 TraesCS5D01G190800 chr7D 86.301 73 9 1 1624 1695 66697026 66696954 1.180000e-10 78.7
31 TraesCS5D01G190800 chr7B 86.301 73 9 1 1624 1695 8866788 8866716 1.180000e-10 78.7
32 TraesCS5D01G190800 chr7B 95.000 40 2 0 569 608 409431051 409431090 3.300000e-06 63.9
33 TraesCS5D01G190800 chr1B 87.143 70 8 1 1623 1691 662016682 662016751 1.180000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G190800 chr5D 293162178 293166137 3959 False 7313 7313 100.000000 1 3960 1 chr5D.!!$F1 3959
1 TraesCS5D01G190800 chr5D 293095574 293096852 1278 False 355 390 79.972500 1190 2531 2 chr5D.!!$F2 1341
2 TraesCS5D01G190800 chr5A 386161932 386165275 3343 False 1311 2671 90.566667 737 3960 3 chr5A.!!$F2 3223
3 TraesCS5D01G190800 chr5A 385955429 385956698 1269 False 357 385 80.517500 1190 2531 2 chr5A.!!$F1 1341
4 TraesCS5D01G190800 chr5B 334681524 334685829 4305 False 1185 2361 91.340250 1 3960 4 chr5B.!!$F2 3959
5 TraesCS5D01G190800 chr5B 334593533 334594802 1269 False 369 416 80.703000 1190 2531 2 chr5B.!!$F1 1341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 651 0.031994 AACAAAGCGTGATGGCCAAC 59.968 50.0 10.96 8.17 0.00 3.77 F
654 661 0.040499 GATGGCCAACCCCCAAAGTA 59.960 55.0 10.96 0.00 35.67 2.24 F
657 664 0.040499 GGCCAACCCCCAAAGTATGA 59.960 55.0 0.00 0.00 0.00 2.15 F
2612 3234 0.176910 GAGGAGGCTGCCTTCTACAC 59.823 60.0 29.21 13.68 40.10 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2617 3239 0.173481 TCGAAGCTCCAATCGGACTG 59.827 55.0 5.75 0.0 39.45 3.51 R
2618 3240 0.173708 GTCGAAGCTCCAATCGGACT 59.826 55.0 5.75 0.0 39.45 3.85 R
2628 3250 0.179124 AGGCAGAATCGTCGAAGCTC 60.179 55.0 0.00 0.0 0.00 4.09 R
3634 4574 0.310543 TGCGCTCGTCTGCAATTTTT 59.689 45.0 9.73 0.0 38.34 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 50 6.719365 CCGTTGCTATTAAGAAGAATCCAAG 58.281 40.000 0.00 0.00 0.00 3.61
52 56 2.380084 AAGAAGAATCCAAGCGCGTA 57.620 45.000 8.43 0.00 0.00 4.42
62 66 2.028476 TCCAAGCGCGTATATAGCCAAT 60.028 45.455 8.43 0.00 0.00 3.16
65 69 2.810650 AGCGCGTATATAGCCAATAGC 58.189 47.619 8.43 0.00 44.25 2.97
76 80 2.425578 GCCAATAGCTAGGTCTCGAC 57.574 55.000 0.00 0.00 38.99 4.20
90 94 3.832704 TCGACATCGAATTGCCTGT 57.167 47.368 0.51 0.00 46.30 4.00
96 100 2.026641 CATCGAATTGCCTGTCCCATT 58.973 47.619 0.00 0.00 0.00 3.16
99 103 2.491693 TCGAATTGCCTGTCCCATTTTC 59.508 45.455 0.00 0.00 0.00 2.29
100 104 2.230992 CGAATTGCCTGTCCCATTTTCA 59.769 45.455 0.00 0.00 0.00 2.69
102 106 4.621274 CGAATTGCCTGTCCCATTTTCATT 60.621 41.667 0.00 0.00 0.00 2.57
103 107 3.959535 TTGCCTGTCCCATTTTCATTC 57.040 42.857 0.00 0.00 0.00 2.67
105 109 3.091545 TGCCTGTCCCATTTTCATTCTC 58.908 45.455 0.00 0.00 0.00 2.87
108 112 3.698040 CCTGTCCCATTTTCATTCTCCTG 59.302 47.826 0.00 0.00 0.00 3.86
113 117 5.012239 TCCCATTTTCATTCTCCTGTTGAG 58.988 41.667 0.00 0.00 42.90 3.02
130 134 6.241207 TGTTGAGGATCGTTTTGATTTCTC 57.759 37.500 0.00 0.00 37.47 2.87
133 137 4.937620 TGAGGATCGTTTTGATTTCTCCAG 59.062 41.667 0.00 0.00 37.47 3.86
155 159 8.437575 TCCAGACAACTAAAGGTCTCTTAATTT 58.562 33.333 0.00 0.00 42.22 1.82
163 167 4.302559 AGGTCTCTTAATTTGGGACACC 57.697 45.455 11.57 3.56 39.29 4.16
166 170 4.514401 GTCTCTTAATTTGGGACACCGAT 58.486 43.478 6.36 0.00 39.29 4.18
167 171 4.332819 GTCTCTTAATTTGGGACACCGATG 59.667 45.833 6.36 0.00 39.29 3.84
168 172 3.013921 TCTTAATTTGGGACACCGATGC 58.986 45.455 0.00 0.00 39.29 3.91
170 174 0.322098 AATTTGGGACACCGATGCGA 60.322 50.000 0.00 0.00 39.29 5.10
179 183 4.889856 CCGATGCGATGCCGGTGA 62.890 66.667 1.90 0.00 38.55 4.02
192 196 4.134623 GGTGACGTGGCTTTGTGA 57.865 55.556 0.00 0.00 0.00 3.58
193 197 2.399856 GGTGACGTGGCTTTGTGAA 58.600 52.632 0.00 0.00 0.00 3.18
195 199 2.147958 GGTGACGTGGCTTTGTGAATA 58.852 47.619 0.00 0.00 0.00 1.75
196 200 2.095919 GGTGACGTGGCTTTGTGAATAC 60.096 50.000 0.00 0.00 0.00 1.89
197 201 2.546368 GTGACGTGGCTTTGTGAATACA 59.454 45.455 0.00 0.00 34.31 2.29
199 203 3.002862 TGACGTGGCTTTGTGAATACAAC 59.997 43.478 0.00 0.00 45.91 3.32
200 204 3.211045 ACGTGGCTTTGTGAATACAACT 58.789 40.909 0.00 0.00 45.91 3.16
201 205 3.630312 ACGTGGCTTTGTGAATACAACTT 59.370 39.130 0.00 0.00 45.91 2.66
202 206 4.219033 CGTGGCTTTGTGAATACAACTTC 58.781 43.478 0.00 0.00 45.91 3.01
203 207 4.260990 CGTGGCTTTGTGAATACAACTTCA 60.261 41.667 0.00 0.00 45.91 3.02
204 208 5.587289 GTGGCTTTGTGAATACAACTTCAA 58.413 37.500 0.00 0.00 45.91 2.69
205 209 6.039616 GTGGCTTTGTGAATACAACTTCAAA 58.960 36.000 0.00 0.00 45.91 2.69
206 210 6.533367 GTGGCTTTGTGAATACAACTTCAAAA 59.467 34.615 0.00 0.00 45.91 2.44
207 211 6.533367 TGGCTTTGTGAATACAACTTCAAAAC 59.467 34.615 0.00 0.00 45.91 2.43
231 235 6.697019 ACAACACTAAAACACATGAAAGCATC 59.303 34.615 0.00 0.00 30.68 3.91
233 237 6.804677 ACACTAAAACACATGAAAGCATCAA 58.195 32.000 0.00 0.00 42.54 2.57
315 319 4.107072 TGGGATGGAAGACAGAGAGAAAT 58.893 43.478 0.00 0.00 0.00 2.17
344 348 3.050089 TGGGACCACCTCTTGTTAGAAA 58.950 45.455 0.00 0.00 41.11 2.52
371 376 2.543641 GGGCAGTGCATAGAAATTTGC 58.456 47.619 18.61 0.00 39.33 3.68
382 387 6.763135 TGCATAGAAATTTGCGAGATTACTCT 59.237 34.615 0.00 0.00 41.80 3.24
411 416 7.739498 TTATCTAAAGGAAAAGTGTGTGGTC 57.261 36.000 0.00 0.00 0.00 4.02
416 421 3.314693 AGGAAAAGTGTGTGGTCTCCTA 58.685 45.455 0.00 0.00 30.01 2.94
438 443 1.849039 CTCCCCCAGGAAAGATGTCAT 59.151 52.381 0.00 0.00 43.40 3.06
441 446 1.396653 CCCAGGAAAGATGTCATGCC 58.603 55.000 0.00 0.00 0.00 4.40
457 462 6.866480 TGTCATGCCTGAATTAAATTTCTCC 58.134 36.000 0.00 0.00 31.85 3.71
463 468 8.287439 TGCCTGAATTAAATTTCTCCGAAATA 57.713 30.769 0.00 0.00 0.00 1.40
486 491 9.638176 AATATCTATGAAAATCCTTGAAGCTGT 57.362 29.630 0.00 0.00 0.00 4.40
487 492 6.748333 TCTATGAAAATCCTTGAAGCTGTG 57.252 37.500 0.00 0.00 0.00 3.66
488 493 6.475504 TCTATGAAAATCCTTGAAGCTGTGA 58.524 36.000 0.00 0.00 0.00 3.58
492 499 6.042143 TGAAAATCCTTGAAGCTGTGAAAAC 58.958 36.000 0.00 0.00 0.00 2.43
493 500 5.596836 AAATCCTTGAAGCTGTGAAAACA 57.403 34.783 0.00 0.00 0.00 2.83
498 505 2.796304 TGAAGCTGTGAAAACAAAGCG 58.204 42.857 6.72 0.00 40.63 4.68
501 508 2.797491 AGCTGTGAAAACAAAGCGAAC 58.203 42.857 6.72 0.00 40.63 3.95
502 509 1.512771 GCTGTGAAAACAAAGCGAACG 59.487 47.619 0.00 0.00 0.00 3.95
505 512 0.382515 TGAAAACAAAGCGAACGGGG 59.617 50.000 0.00 0.00 0.00 5.73
524 531 5.945191 ACGGGGAATTTCTTTCGGTATTTAA 59.055 36.000 0.00 0.00 34.98 1.52
525 532 6.127925 ACGGGGAATTTCTTTCGGTATTTAAC 60.128 38.462 0.00 0.00 34.98 2.01
526 533 6.094464 CGGGGAATTTCTTTCGGTATTTAACT 59.906 38.462 0.00 0.00 34.98 2.24
527 534 7.362315 CGGGGAATTTCTTTCGGTATTTAACTT 60.362 37.037 0.00 0.00 34.98 2.66
528 535 7.972277 GGGGAATTTCTTTCGGTATTTAACTTC 59.028 37.037 0.00 0.00 34.98 3.01
529 536 8.737175 GGGAATTTCTTTCGGTATTTAACTTCT 58.263 33.333 0.00 0.00 34.98 2.85
561 568 4.853924 TTGCCTTTTTGAGACAATCTCC 57.146 40.909 3.45 0.00 42.73 3.71
562 569 3.157087 TGCCTTTTTGAGACAATCTCCC 58.843 45.455 3.45 0.00 42.73 4.30
563 570 3.157087 GCCTTTTTGAGACAATCTCCCA 58.843 45.455 3.45 0.00 42.73 4.37
564 571 3.573967 GCCTTTTTGAGACAATCTCCCAA 59.426 43.478 3.45 0.00 42.73 4.12
565 572 4.039124 GCCTTTTTGAGACAATCTCCCAAA 59.961 41.667 3.45 0.87 42.73 3.28
566 573 5.776744 CCTTTTTGAGACAATCTCCCAAAG 58.223 41.667 14.39 14.39 42.73 2.77
567 574 4.853924 TTTTGAGACAATCTCCCAAAGC 57.146 40.909 3.45 0.00 42.73 3.51
568 575 3.795688 TTGAGACAATCTCCCAAAGCT 57.204 42.857 3.45 0.00 42.73 3.74
569 576 3.795688 TGAGACAATCTCCCAAAGCTT 57.204 42.857 0.00 0.00 42.73 3.74
570 577 4.104383 TGAGACAATCTCCCAAAGCTTT 57.896 40.909 5.69 5.69 42.73 3.51
571 578 4.473444 TGAGACAATCTCCCAAAGCTTTT 58.527 39.130 9.53 0.00 42.73 2.27
572 579 5.630121 TGAGACAATCTCCCAAAGCTTTTA 58.370 37.500 9.53 0.00 42.73 1.52
573 580 6.248433 TGAGACAATCTCCCAAAGCTTTTAT 58.752 36.000 9.53 0.00 42.73 1.40
574 581 6.721208 TGAGACAATCTCCCAAAGCTTTTATT 59.279 34.615 9.53 2.24 42.73 1.40
575 582 7.094205 TGAGACAATCTCCCAAAGCTTTTATTC 60.094 37.037 9.53 0.00 42.73 1.75
576 583 6.721208 AGACAATCTCCCAAAGCTTTTATTCA 59.279 34.615 9.53 0.00 0.00 2.57
577 584 7.398332 AGACAATCTCCCAAAGCTTTTATTCAT 59.602 33.333 9.53 0.00 0.00 2.57
578 585 8.593945 ACAATCTCCCAAAGCTTTTATTCATA 57.406 30.769 9.53 0.00 0.00 2.15
579 586 8.470002 ACAATCTCCCAAAGCTTTTATTCATAC 58.530 33.333 9.53 0.00 0.00 2.39
580 587 6.677781 TCTCCCAAAGCTTTTATTCATACG 57.322 37.500 9.53 0.00 0.00 3.06
581 588 6.177610 TCTCCCAAAGCTTTTATTCATACGT 58.822 36.000 9.53 0.00 0.00 3.57
582 589 6.315393 TCTCCCAAAGCTTTTATTCATACGTC 59.685 38.462 9.53 0.00 0.00 4.34
583 590 5.941058 TCCCAAAGCTTTTATTCATACGTCA 59.059 36.000 9.53 0.00 0.00 4.35
584 591 6.027749 CCCAAAGCTTTTATTCATACGTCAC 58.972 40.000 9.53 0.00 0.00 3.67
585 592 6.348950 CCCAAAGCTTTTATTCATACGTCACA 60.349 38.462 9.53 0.00 0.00 3.58
586 593 7.081349 CCAAAGCTTTTATTCATACGTCACAA 58.919 34.615 9.53 0.00 0.00 3.33
587 594 7.754924 CCAAAGCTTTTATTCATACGTCACAAT 59.245 33.333 9.53 0.00 0.00 2.71
588 595 8.577939 CAAAGCTTTTATTCATACGTCACAATG 58.422 33.333 9.53 0.00 0.00 2.82
589 596 7.377766 AGCTTTTATTCATACGTCACAATGT 57.622 32.000 0.00 0.00 0.00 2.71
590 597 7.816640 AGCTTTTATTCATACGTCACAATGTT 58.183 30.769 0.00 0.00 0.00 2.71
591 598 8.296713 AGCTTTTATTCATACGTCACAATGTTT 58.703 29.630 0.00 0.00 0.00 2.83
592 599 9.549509 GCTTTTATTCATACGTCACAATGTTTA 57.450 29.630 0.00 0.00 0.00 2.01
596 603 6.474819 TTCATACGTCACAATGTTTACAGG 57.525 37.500 0.00 0.00 0.00 4.00
597 604 4.932799 TCATACGTCACAATGTTTACAGGG 59.067 41.667 0.00 0.00 0.00 4.45
598 605 3.478857 ACGTCACAATGTTTACAGGGA 57.521 42.857 0.00 0.00 0.00 4.20
599 606 3.135994 ACGTCACAATGTTTACAGGGAC 58.864 45.455 0.00 0.00 0.00 4.46
600 607 2.156891 CGTCACAATGTTTACAGGGACG 59.843 50.000 11.00 11.00 40.45 4.79
601 608 3.395639 GTCACAATGTTTACAGGGACGA 58.604 45.455 0.00 0.00 0.00 4.20
602 609 3.810941 GTCACAATGTTTACAGGGACGAA 59.189 43.478 0.00 0.00 0.00 3.85
603 610 4.062293 TCACAATGTTTACAGGGACGAAG 58.938 43.478 0.00 0.00 0.00 3.79
604 611 4.062293 CACAATGTTTACAGGGACGAAGA 58.938 43.478 0.00 0.00 0.00 2.87
605 612 4.152402 CACAATGTTTACAGGGACGAAGAG 59.848 45.833 0.00 0.00 0.00 2.85
606 613 4.039973 ACAATGTTTACAGGGACGAAGAGA 59.960 41.667 0.00 0.00 0.00 3.10
607 614 4.884668 ATGTTTACAGGGACGAAGAGAA 57.115 40.909 0.00 0.00 0.00 2.87
608 615 4.252971 TGTTTACAGGGACGAAGAGAAG 57.747 45.455 0.00 0.00 0.00 2.85
609 616 3.893200 TGTTTACAGGGACGAAGAGAAGA 59.107 43.478 0.00 0.00 0.00 2.87
610 617 4.527038 TGTTTACAGGGACGAAGAGAAGAT 59.473 41.667 0.00 0.00 0.00 2.40
611 618 4.985538 TTACAGGGACGAAGAGAAGATC 57.014 45.455 0.00 0.00 0.00 2.75
612 619 2.808919 ACAGGGACGAAGAGAAGATCA 58.191 47.619 0.00 0.00 0.00 2.92
613 620 2.494073 ACAGGGACGAAGAGAAGATCAC 59.506 50.000 0.00 0.00 0.00 3.06
614 621 2.757868 CAGGGACGAAGAGAAGATCACT 59.242 50.000 0.00 0.00 0.00 3.41
615 622 2.757868 AGGGACGAAGAGAAGATCACTG 59.242 50.000 0.00 0.00 0.00 3.66
616 623 2.159170 GGGACGAAGAGAAGATCACTGG 60.159 54.545 0.00 0.00 0.00 4.00
617 624 2.159170 GGACGAAGAGAAGATCACTGGG 60.159 54.545 0.00 0.00 0.00 4.45
618 625 2.494073 GACGAAGAGAAGATCACTGGGT 59.506 50.000 0.00 0.00 0.00 4.51
619 626 2.900546 ACGAAGAGAAGATCACTGGGTT 59.099 45.455 0.00 0.00 0.00 4.11
620 627 3.257393 CGAAGAGAAGATCACTGGGTTG 58.743 50.000 0.00 0.00 0.00 3.77
621 628 3.604582 GAAGAGAAGATCACTGGGTTGG 58.395 50.000 0.00 0.00 0.00 3.77
622 629 1.280421 AGAGAAGATCACTGGGTTGGC 59.720 52.381 0.00 0.00 0.00 4.52
623 630 1.280421 GAGAAGATCACTGGGTTGGCT 59.720 52.381 0.00 0.00 0.00 4.75
624 631 1.707427 AGAAGATCACTGGGTTGGCTT 59.293 47.619 0.00 0.00 0.00 4.35
625 632 2.912956 AGAAGATCACTGGGTTGGCTTA 59.087 45.455 0.00 0.00 0.00 3.09
626 633 3.330701 AGAAGATCACTGGGTTGGCTTAA 59.669 43.478 0.00 0.00 0.00 1.85
627 634 3.073274 AGATCACTGGGTTGGCTTAAC 57.927 47.619 0.00 0.00 38.60 2.01
628 635 2.375174 AGATCACTGGGTTGGCTTAACA 59.625 45.455 0.00 0.00 41.18 2.41
629 636 2.738587 TCACTGGGTTGGCTTAACAA 57.261 45.000 6.70 0.00 41.18 2.83
630 637 3.019799 TCACTGGGTTGGCTTAACAAA 57.980 42.857 6.70 0.00 41.18 2.83
631 638 2.955660 TCACTGGGTTGGCTTAACAAAG 59.044 45.455 6.70 5.73 41.18 2.77
632 639 1.686587 ACTGGGTTGGCTTAACAAAGC 59.313 47.619 1.47 1.47 44.76 3.51
633 640 0.671251 TGGGTTGGCTTAACAAAGCG 59.329 50.000 4.20 0.00 46.38 4.68
634 641 0.671796 GGGTTGGCTTAACAAAGCGT 59.328 50.000 4.20 0.00 46.38 5.07
635 642 1.601914 GGGTTGGCTTAACAAAGCGTG 60.602 52.381 4.20 0.00 46.38 5.34
636 643 1.335496 GGTTGGCTTAACAAAGCGTGA 59.665 47.619 4.20 0.00 46.38 4.35
637 644 2.030274 GGTTGGCTTAACAAAGCGTGAT 60.030 45.455 4.20 0.00 46.38 3.06
638 645 2.979813 GTTGGCTTAACAAAGCGTGATG 59.020 45.455 4.20 0.00 46.38 3.07
639 646 1.539388 TGGCTTAACAAAGCGTGATGG 59.461 47.619 4.20 0.00 46.38 3.51
640 647 1.617740 GCTTAACAAAGCGTGATGGC 58.382 50.000 0.00 0.00 35.93 4.40
641 648 1.732405 GCTTAACAAAGCGTGATGGCC 60.732 52.381 0.00 0.00 35.93 5.36
642 649 1.539388 CTTAACAAAGCGTGATGGCCA 59.461 47.619 8.56 8.56 0.00 5.36
643 650 1.610363 TAACAAAGCGTGATGGCCAA 58.390 45.000 10.96 0.00 0.00 4.52
644 651 0.031994 AACAAAGCGTGATGGCCAAC 59.968 50.000 10.96 8.17 0.00 3.77
645 652 1.080569 CAAAGCGTGATGGCCAACC 60.081 57.895 10.96 5.37 0.00 3.77
646 653 2.275380 AAAGCGTGATGGCCAACCC 61.275 57.895 10.96 0.00 33.59 4.11
647 654 4.740822 AGCGTGATGGCCAACCCC 62.741 66.667 10.96 0.00 33.59 4.95
649 656 4.358841 CGTGATGGCCAACCCCCA 62.359 66.667 10.96 0.00 36.66 4.96
650 657 2.119391 GTGATGGCCAACCCCCAA 59.881 61.111 10.96 0.00 35.67 4.12
651 658 1.535202 GTGATGGCCAACCCCCAAA 60.535 57.895 10.96 0.00 35.67 3.28
652 659 1.229145 TGATGGCCAACCCCCAAAG 60.229 57.895 10.96 0.00 35.67 2.77
653 660 1.229177 GATGGCCAACCCCCAAAGT 60.229 57.895 10.96 0.00 35.67 2.66
654 661 0.040499 GATGGCCAACCCCCAAAGTA 59.960 55.000 10.96 0.00 35.67 2.24
655 662 0.715987 ATGGCCAACCCCCAAAGTAT 59.284 50.000 10.96 0.00 35.67 2.12
656 663 0.252012 TGGCCAACCCCCAAAGTATG 60.252 55.000 0.61 0.00 33.59 2.39
657 664 0.040499 GGCCAACCCCCAAAGTATGA 59.960 55.000 0.00 0.00 0.00 2.15
658 665 1.474330 GCCAACCCCCAAAGTATGAG 58.526 55.000 0.00 0.00 0.00 2.90
659 666 1.474330 CCAACCCCCAAAGTATGAGC 58.526 55.000 0.00 0.00 0.00 4.26
660 667 1.272425 CCAACCCCCAAAGTATGAGCA 60.272 52.381 0.00 0.00 0.00 4.26
661 668 2.624029 CCAACCCCCAAAGTATGAGCAT 60.624 50.000 0.00 0.00 0.00 3.79
662 669 2.428171 CAACCCCCAAAGTATGAGCATG 59.572 50.000 0.00 0.00 0.00 4.06
663 670 1.035139 CCCCCAAAGTATGAGCATGC 58.965 55.000 10.51 10.51 0.00 4.06
664 671 1.410648 CCCCCAAAGTATGAGCATGCT 60.411 52.381 22.92 22.92 35.21 3.79
665 672 2.381911 CCCCAAAGTATGAGCATGCTT 58.618 47.619 23.61 9.66 43.90 3.91
681 688 3.781079 TGCTTTGCTACATTATGTGCC 57.219 42.857 8.26 0.00 0.00 5.01
682 689 3.355378 TGCTTTGCTACATTATGTGCCT 58.645 40.909 8.26 0.00 0.00 4.75
683 690 3.378112 TGCTTTGCTACATTATGTGCCTC 59.622 43.478 8.26 0.00 0.00 4.70
684 691 3.546815 GCTTTGCTACATTATGTGCCTCG 60.547 47.826 8.26 2.68 0.00 4.63
685 692 3.535280 TTGCTACATTATGTGCCTCGA 57.465 42.857 8.26 0.00 0.00 4.04
686 693 3.535280 TGCTACATTATGTGCCTCGAA 57.465 42.857 8.26 0.00 0.00 3.71
687 694 3.867857 TGCTACATTATGTGCCTCGAAA 58.132 40.909 8.26 0.00 0.00 3.46
688 695 4.450976 TGCTACATTATGTGCCTCGAAAT 58.549 39.130 8.26 0.00 0.00 2.17
689 696 4.881273 TGCTACATTATGTGCCTCGAAATT 59.119 37.500 8.26 0.00 0.00 1.82
690 697 5.007626 TGCTACATTATGTGCCTCGAAATTC 59.992 40.000 8.26 0.00 0.00 2.17
691 698 4.536364 ACATTATGTGCCTCGAAATTCG 57.464 40.909 9.38 9.38 42.10 3.34
705 712 5.775686 TCGAAATTCGAGGTTCTAAACTCA 58.224 37.500 14.59 0.00 44.82 3.41
706 713 6.395629 TCGAAATTCGAGGTTCTAAACTCAT 58.604 36.000 14.59 0.00 44.82 2.90
707 714 6.310467 TCGAAATTCGAGGTTCTAAACTCATG 59.690 38.462 14.59 0.00 44.82 3.07
708 715 6.455646 CGAAATTCGAGGTTCTAAACTCATGG 60.456 42.308 10.18 0.00 43.74 3.66
709 716 3.247006 TCGAGGTTCTAAACTCATGGC 57.753 47.619 8.41 0.00 33.36 4.40
710 717 2.565391 TCGAGGTTCTAAACTCATGGCA 59.435 45.455 8.41 0.00 33.36 4.92
711 718 3.007506 TCGAGGTTCTAAACTCATGGCAA 59.992 43.478 8.41 0.00 33.36 4.52
712 719 3.751175 CGAGGTTCTAAACTCATGGCAAA 59.249 43.478 8.41 0.00 33.36 3.68
713 720 4.215399 CGAGGTTCTAAACTCATGGCAAAA 59.785 41.667 8.41 0.00 33.36 2.44
714 721 5.106157 CGAGGTTCTAAACTCATGGCAAAAT 60.106 40.000 8.41 0.00 33.36 1.82
715 722 6.570378 CGAGGTTCTAAACTCATGGCAAAATT 60.570 38.462 8.41 0.00 33.36 1.82
716 723 7.361713 CGAGGTTCTAAACTCATGGCAAAATTA 60.362 37.037 8.41 0.00 33.36 1.40
717 724 7.602753 AGGTTCTAAACTCATGGCAAAATTAC 58.397 34.615 0.00 0.00 0.00 1.89
718 725 7.232534 AGGTTCTAAACTCATGGCAAAATTACA 59.767 33.333 0.00 0.00 0.00 2.41
719 726 7.870445 GGTTCTAAACTCATGGCAAAATTACAA 59.130 33.333 0.00 0.00 0.00 2.41
720 727 8.915654 GTTCTAAACTCATGGCAAAATTACAAG 58.084 33.333 0.00 0.00 0.00 3.16
721 728 8.402798 TCTAAACTCATGGCAAAATTACAAGA 57.597 30.769 0.00 0.00 0.00 3.02
722 729 9.023962 TCTAAACTCATGGCAAAATTACAAGAT 57.976 29.630 0.00 0.00 0.00 2.40
725 732 9.995003 AAACTCATGGCAAAATTACAAGATAAA 57.005 25.926 0.00 0.00 0.00 1.40
726 733 9.995003 AACTCATGGCAAAATTACAAGATAAAA 57.005 25.926 0.00 0.00 0.00 1.52
727 734 9.995003 ACTCATGGCAAAATTACAAGATAAAAA 57.005 25.926 0.00 0.00 0.00 1.94
730 737 9.991388 CATGGCAAAATTACAAGATAAAAATGG 57.009 29.630 0.00 0.00 0.00 3.16
731 738 9.956640 ATGGCAAAATTACAAGATAAAAATGGA 57.043 25.926 0.00 0.00 0.00 3.41
732 739 9.434420 TGGCAAAATTACAAGATAAAAATGGAG 57.566 29.630 0.00 0.00 0.00 3.86
733 740 8.390354 GGCAAAATTACAAGATAAAAATGGAGC 58.610 33.333 0.00 0.00 0.00 4.70
734 741 9.154847 GCAAAATTACAAGATAAAAATGGAGCT 57.845 29.630 0.00 0.00 0.00 4.09
837 851 2.774439 CTTTGCTAGCAACAACCGTT 57.226 45.000 29.33 0.00 35.46 4.44
901 915 1.476471 GGCCAATCAGATCACTCCCTG 60.476 57.143 0.00 0.00 0.00 4.45
987 1001 1.202330 ACAGCTCATCCTCCCTTCTG 58.798 55.000 0.00 0.00 0.00 3.02
1001 1015 0.533755 CTTCTGCCCGATCACATCCC 60.534 60.000 0.00 0.00 0.00 3.85
1007 1021 2.028996 GCCCGATCACATCCCCATTTT 61.029 52.381 0.00 0.00 0.00 1.82
1020 1034 1.379642 CCATTTTGCCTCTCCTCCGC 61.380 60.000 0.00 0.00 0.00 5.54
1021 1035 1.450312 ATTTTGCCTCTCCTCCGCG 60.450 57.895 0.00 0.00 0.00 6.46
1022 1036 4.760047 TTTGCCTCTCCTCCGCGC 62.760 66.667 0.00 0.00 0.00 6.86
1046 1060 1.136891 CTCTCTCCACACACACACACA 59.863 52.381 0.00 0.00 0.00 3.72
1054 1068 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1064 1078 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1065 1079 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1066 1080 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1067 1081 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1068 1082 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1069 1083 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1070 1084 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1071 1085 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1072 1086 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1073 1087 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1074 1088 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1075 1089 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1076 1090 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1077 1091 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
1078 1092 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
1079 1093 1.128507 CACACACACACACACACAGAC 59.871 52.381 0.00 0.00 0.00 3.51
1080 1094 1.270571 ACACACACACACACACAGACA 60.271 47.619 0.00 0.00 0.00 3.41
1081 1095 1.128507 CACACACACACACACAGACAC 59.871 52.381 0.00 0.00 0.00 3.67
1082 1096 1.270571 ACACACACACACACAGACACA 60.271 47.619 0.00 0.00 0.00 3.72
1083 1097 1.128507 CACACACACACACAGACACAC 59.871 52.381 0.00 0.00 0.00 3.82
1084 1098 1.270571 ACACACACACACAGACACACA 60.271 47.619 0.00 0.00 0.00 3.72
1096 1110 3.572682 ACAGACACACACTTCCGATCTTA 59.427 43.478 0.00 0.00 0.00 2.10
1147 1473 1.866925 CACCGGCGAGAAAGAAACC 59.133 57.895 9.30 0.00 0.00 3.27
1157 1483 1.630878 AGAAAGAAACCCCGAGCAGAT 59.369 47.619 0.00 0.00 0.00 2.90
1468 1797 1.202818 AGCCCAACAAGAAGAGGTGAC 60.203 52.381 0.00 0.00 0.00 3.67
1480 1809 0.251209 GAGGTGACCCAAAACCCCTC 60.251 60.000 0.00 0.00 37.13 4.30
1496 1825 0.514691 CCTCGCAGTTGCAGAGAAAC 59.485 55.000 19.89 0.00 41.04 2.78
1722 2079 2.879826 CATTTCGGCCAAAGTTCATCC 58.120 47.619 2.24 0.00 0.00 3.51
1726 2083 0.447801 CGGCCAAAGTTCATCCTTCG 59.552 55.000 2.24 0.00 0.00 3.79
1872 2458 4.199002 TGTCAGATAGGAATAGGGCAGA 57.801 45.455 0.00 0.00 0.00 4.26
1925 2511 3.659183 AAGGAGCTGCTGTTATTGGAT 57.341 42.857 9.14 0.00 0.00 3.41
1930 2516 3.812053 GAGCTGCTGTTATTGGATAGGTG 59.188 47.826 7.01 0.00 0.00 4.00
1931 2517 3.455910 AGCTGCTGTTATTGGATAGGTGA 59.544 43.478 0.00 0.00 0.00 4.02
1932 2518 4.103785 AGCTGCTGTTATTGGATAGGTGAT 59.896 41.667 0.00 0.00 0.00 3.06
1956 2542 1.246056 ATGGCGTGATGCTGCTTTGT 61.246 50.000 0.00 0.00 45.43 2.83
1991 2577 4.502263 TCTGGCTTCAGAATCGCG 57.498 55.556 0.00 0.00 43.84 5.87
2002 2588 3.390135 TCAGAATCGCGAACTTTTCTGT 58.610 40.909 32.76 11.40 43.45 3.41
2035 2621 3.760580 AGTTCAGAGTTCAGAACTGGG 57.239 47.619 21.00 11.84 46.41 4.45
2073 2659 4.073052 TTTTTCGCCGTGCCTGAT 57.927 50.000 0.00 0.00 0.00 2.90
2121 2707 0.388659 ACTACCGTTGCACGTACCAA 59.611 50.000 7.68 0.00 40.58 3.67
2609 3231 1.758514 CGGAGGAGGCTGCCTTCTA 60.759 63.158 29.21 0.00 40.10 2.10
2611 3233 0.978146 GGAGGAGGCTGCCTTCTACA 60.978 60.000 30.87 0.00 40.10 2.74
2612 3234 0.176910 GAGGAGGCTGCCTTCTACAC 59.823 60.000 29.21 13.68 40.10 2.90
2613 3235 0.545309 AGGAGGCTGCCTTCTACACA 60.545 55.000 28.17 0.00 37.79 3.72
2615 3237 1.065126 GGAGGCTGCCTTCTACACATT 60.065 52.381 24.26 0.00 31.76 2.71
2616 3238 2.284190 GAGGCTGCCTTCTACACATTC 58.716 52.381 24.26 1.75 31.76 2.67
2617 3239 1.065126 AGGCTGCCTTCTACACATTCC 60.065 52.381 17.22 0.00 0.00 3.01
2618 3240 1.340017 GGCTGCCTTCTACACATTCCA 60.340 52.381 12.43 0.00 0.00 3.53
2619 3241 2.012673 GCTGCCTTCTACACATTCCAG 58.987 52.381 0.00 0.00 0.00 3.86
2620 3242 2.616510 GCTGCCTTCTACACATTCCAGT 60.617 50.000 0.00 0.00 0.00 4.00
2621 3243 3.265791 CTGCCTTCTACACATTCCAGTC 58.734 50.000 0.00 0.00 0.00 3.51
2622 3244 2.027192 TGCCTTCTACACATTCCAGTCC 60.027 50.000 0.00 0.00 0.00 3.85
2623 3245 2.893637 CCTTCTACACATTCCAGTCCG 58.106 52.381 0.00 0.00 0.00 4.79
2624 3246 2.496070 CCTTCTACACATTCCAGTCCGA 59.504 50.000 0.00 0.00 0.00 4.55
2625 3247 3.133003 CCTTCTACACATTCCAGTCCGAT 59.867 47.826 0.00 0.00 0.00 4.18
2626 3248 4.383118 CCTTCTACACATTCCAGTCCGATT 60.383 45.833 0.00 0.00 0.00 3.34
2627 3249 4.123497 TCTACACATTCCAGTCCGATTG 57.877 45.455 0.00 0.00 0.00 2.67
2628 3250 2.113860 ACACATTCCAGTCCGATTGG 57.886 50.000 3.49 3.49 37.04 3.16
2629 3251 1.628340 ACACATTCCAGTCCGATTGGA 59.372 47.619 8.51 8.51 42.81 3.53
2662 3284 2.158871 TCTGCCTTGGACGTTAACAACT 60.159 45.455 6.39 0.00 0.00 3.16
2670 3292 2.535574 GGACGTTAACAACTTCGACGTT 59.464 45.455 6.39 0.74 45.66 3.99
2671 3293 3.000222 GGACGTTAACAACTTCGACGTTT 60.000 43.478 4.29 0.00 45.66 3.60
2672 3294 4.168792 ACGTTAACAACTTCGACGTTTC 57.831 40.909 4.29 0.00 43.53 2.78
2673 3295 3.859386 ACGTTAACAACTTCGACGTTTCT 59.141 39.130 4.29 0.00 43.53 2.52
2674 3296 4.191161 CGTTAACAACTTCGACGTTTCTG 58.809 43.478 4.29 0.00 0.00 3.02
2675 3297 2.732001 AACAACTTCGACGTTTCTGC 57.268 45.000 4.29 0.00 0.00 4.26
2676 3298 0.935196 ACAACTTCGACGTTTCTGCC 59.065 50.000 4.29 0.00 0.00 4.85
2677 3299 1.217882 CAACTTCGACGTTTCTGCCT 58.782 50.000 4.29 0.00 0.00 4.75
2678 3300 1.597663 CAACTTCGACGTTTCTGCCTT 59.402 47.619 4.29 0.00 0.00 4.35
2688 3310 1.880027 GTTTCTGCCTTGGACGTCAAT 59.120 47.619 18.91 0.00 34.45 2.57
2705 3327 4.147653 CGTCAATAACTTCGACGTTTCTGT 59.852 41.667 12.88 0.00 45.59 3.41
2712 3334 3.797256 ACTTCGACGTTTCTGTCTTCTTG 59.203 43.478 0.00 0.00 36.71 3.02
2727 3349 4.456911 GTCTTCTTGGCATGAGATGTTTGA 59.543 41.667 0.00 0.00 0.00 2.69
2742 3387 7.389884 TGAGATGTTTGAAAAGAGAAGATGAGG 59.610 37.037 0.00 0.00 0.00 3.86
2774 3422 1.376553 GAAGCAGCTGGAGGTGACC 60.377 63.158 17.12 0.00 45.66 4.02
2775 3423 2.116983 GAAGCAGCTGGAGGTGACCA 62.117 60.000 17.12 0.00 45.66 4.02
2776 3424 2.359230 GCAGCTGGAGGTGACCAC 60.359 66.667 17.12 0.00 45.66 4.16
2823 3492 0.034059 ACGCCAGTTCTTCCTCAGTG 59.966 55.000 0.00 0.00 0.00 3.66
2826 3495 1.805869 CCAGTTCTTCCTCAGTGCAG 58.194 55.000 0.00 0.00 0.00 4.41
2829 3498 1.346068 AGTTCTTCCTCAGTGCAGGTC 59.654 52.381 8.05 0.00 34.76 3.85
2831 3500 0.972134 TCTTCCTCAGTGCAGGTCTG 59.028 55.000 8.05 0.00 34.76 3.51
2860 3531 5.248380 AGGACATAAGATTATTGCCTCCC 57.752 43.478 0.00 0.00 0.00 4.30
2977 3908 2.263077 GGTGTTCTGCATCTCGTACAG 58.737 52.381 0.00 0.00 0.00 2.74
2980 3911 3.365220 GTGTTCTGCATCTCGTACAGTTC 59.635 47.826 0.00 0.00 33.12 3.01
3058 3989 5.591877 GGACATAGAATGCCACTCTTCAAAT 59.408 40.000 0.00 0.00 0.00 2.32
3059 3990 6.238593 GGACATAGAATGCCACTCTTCAAATC 60.239 42.308 0.00 0.00 0.00 2.17
3061 3992 6.660521 ACATAGAATGCCACTCTTCAAATCAA 59.339 34.615 0.00 0.00 0.00 2.57
3064 3995 6.819284 AGAATGCCACTCTTCAAATCAAAAA 58.181 32.000 0.00 0.00 0.00 1.94
3065 3996 6.927381 AGAATGCCACTCTTCAAATCAAAAAG 59.073 34.615 0.00 0.00 0.00 2.27
3066 3997 4.947645 TGCCACTCTTCAAATCAAAAAGG 58.052 39.130 0.00 0.00 0.00 3.11
3067 3998 4.202243 TGCCACTCTTCAAATCAAAAAGGG 60.202 41.667 0.00 0.00 0.00 3.95
3068 3999 4.039124 GCCACTCTTCAAATCAAAAAGGGA 59.961 41.667 0.00 0.00 0.00 4.20
3094 4025 4.558226 AGGAATAATCAGCTGTGACACA 57.442 40.909 14.67 8.26 34.75 3.72
3099 4030 6.749118 GGAATAATCAGCTGTGACACAAAATC 59.251 38.462 14.67 0.00 34.75 2.17
3119 4050 8.812329 CAAAATCAAACGAATCCTTTTGTTACA 58.188 29.630 0.00 0.00 38.29 2.41
3124 4055 4.855531 ACGAATCCTTTTGTTACACTTGC 58.144 39.130 0.00 0.00 0.00 4.01
3157 4095 3.252400 TCGCAAATAAGCCAGCAAAATG 58.748 40.909 0.00 0.00 0.00 2.32
3158 4096 3.056962 TCGCAAATAAGCCAGCAAAATGA 60.057 39.130 0.00 0.00 0.00 2.57
3159 4097 3.679025 CGCAAATAAGCCAGCAAAATGAA 59.321 39.130 0.00 0.00 0.00 2.57
3160 4098 4.201647 CGCAAATAAGCCAGCAAAATGAAG 60.202 41.667 0.00 0.00 0.00 3.02
3161 4099 4.093850 GCAAATAAGCCAGCAAAATGAAGG 59.906 41.667 0.00 0.00 0.00 3.46
3162 4100 5.481105 CAAATAAGCCAGCAAAATGAAGGA 58.519 37.500 0.00 0.00 0.00 3.36
3163 4101 5.945144 AATAAGCCAGCAAAATGAAGGAT 57.055 34.783 0.00 0.00 0.00 3.24
3243 4182 4.574013 GGACAGTATGAGCCAGATGAAAAG 59.426 45.833 0.00 0.00 39.69 2.27
3245 4184 5.564550 ACAGTATGAGCCAGATGAAAAGTT 58.435 37.500 0.00 0.00 39.69 2.66
3246 4185 5.645497 ACAGTATGAGCCAGATGAAAAGTTC 59.355 40.000 0.00 0.00 39.69 3.01
3247 4186 5.645067 CAGTATGAGCCAGATGAAAAGTTCA 59.355 40.000 0.00 0.00 41.31 3.18
3248 4187 6.318144 CAGTATGAGCCAGATGAAAAGTTCAT 59.682 38.462 3.17 3.17 46.93 2.57
3249 4188 7.496920 CAGTATGAGCCAGATGAAAAGTTCATA 59.503 37.037 3.53 0.00 45.13 2.15
3261 4200 0.252197 AGTTCATACGTTGCCCCCTC 59.748 55.000 0.00 0.00 0.00 4.30
3262 4201 1.087771 GTTCATACGTTGCCCCCTCG 61.088 60.000 0.00 0.00 0.00 4.63
3295 4234 5.357878 AGTGTGAAATTCTTTGACAGCTGAA 59.642 36.000 23.35 5.08 37.44 3.02
3326 4266 4.336433 CAGAGGAAAACTTGACTGAGCAAA 59.664 41.667 0.00 0.00 0.00 3.68
3342 4282 5.663456 TGAGCAAAAGCTTTCTTTGAATGT 58.337 33.333 13.10 0.00 41.40 2.71
3344 4284 7.436118 TGAGCAAAAGCTTTCTTTGAATGTAT 58.564 30.769 13.10 0.00 41.40 2.29
3345 4285 8.575589 TGAGCAAAAGCTTTCTTTGAATGTATA 58.424 29.630 13.10 0.00 41.40 1.47
3346 4286 8.976986 AGCAAAAGCTTTCTTTGAATGTATAG 57.023 30.769 13.10 0.00 41.40 1.31
3347 4287 7.543520 AGCAAAAGCTTTCTTTGAATGTATAGC 59.456 33.333 13.10 0.00 41.40 2.97
3358 4298 5.557576 TGAATGTATAGCAAGCCTCTCAT 57.442 39.130 0.00 0.00 0.00 2.90
3379 4319 6.798482 TCATTGTCATGCAAGGAATCAATAC 58.202 36.000 12.57 0.00 43.74 1.89
3515 4455 1.072332 CCATGGTCGGGTCACACAA 59.928 57.895 2.57 0.00 0.00 3.33
3564 4504 3.066064 TCAAACATGAAACCAGAACCACG 59.934 43.478 0.00 0.00 0.00 4.94
3606 4546 5.605534 CAGTCCTCATCACGATTAGGAAAT 58.394 41.667 10.80 2.11 41.42 2.17
3627 4567 0.155422 GTTTCGTTCGTCGTCGTCAC 59.845 55.000 1.33 0.01 40.80 3.67
3634 4574 0.881600 TCGTCGTCGTCACCTTCAGA 60.882 55.000 1.33 0.00 38.33 3.27
3691 4631 1.557371 GCTTTTACAGCCTCTCCTCCT 59.443 52.381 0.00 0.00 43.65 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.181578 TCTTCTTAATAGCAACGGCAGAC 58.818 43.478 0.00 0.00 44.61 3.51
62 66 2.904697 TCGATGTCGAGACCTAGCTA 57.095 50.000 0.21 0.00 44.22 3.32
73 77 0.652592 GGACAGGCAATTCGATGTCG 59.347 55.000 8.13 0.00 42.34 4.35
74 78 1.017387 GGGACAGGCAATTCGATGTC 58.983 55.000 6.11 6.11 41.03 3.06
75 79 0.327924 TGGGACAGGCAATTCGATGT 59.672 50.000 0.00 0.00 0.00 3.06
76 80 3.173540 TGGGACAGGCAATTCGATG 57.826 52.632 0.00 0.00 0.00 3.84
89 93 4.766891 TCAACAGGAGAATGAAAATGGGAC 59.233 41.667 0.00 0.00 0.00 4.46
90 94 4.996793 TCAACAGGAGAATGAAAATGGGA 58.003 39.130 0.00 0.00 0.00 4.37
105 109 5.182001 AGAAATCAAAACGATCCTCAACAGG 59.818 40.000 0.00 0.00 42.01 4.00
108 112 5.181245 TGGAGAAATCAAAACGATCCTCAAC 59.819 40.000 0.00 0.00 31.11 3.18
113 117 4.695455 TGTCTGGAGAAATCAAAACGATCC 59.305 41.667 0.00 0.00 31.11 3.36
117 121 5.424121 AGTTGTCTGGAGAAATCAAAACG 57.576 39.130 0.00 0.00 0.00 3.60
119 123 7.559897 ACCTTTAGTTGTCTGGAGAAATCAAAA 59.440 33.333 0.00 0.00 0.00 2.44
123 127 6.468543 AGACCTTTAGTTGTCTGGAGAAATC 58.531 40.000 0.00 0.00 40.23 2.17
130 134 8.507249 CAAATTAAGAGACCTTTAGTTGTCTGG 58.493 37.037 0.00 0.00 41.74 3.86
133 137 7.664318 TCCCAAATTAAGAGACCTTTAGTTGTC 59.336 37.037 0.00 0.00 36.11 3.18
155 159 2.186644 CATCGCATCGGTGTCCCA 59.813 61.111 0.00 0.00 32.87 4.37
163 167 3.630148 GTCACCGGCATCGCATCG 61.630 66.667 0.00 0.00 34.56 3.84
176 180 2.546368 TGTATTCACAAAGCCACGTCAC 59.454 45.455 0.00 0.00 0.00 3.67
179 183 3.211045 AGTTGTATTCACAAAGCCACGT 58.789 40.909 0.00 0.00 45.99 4.49
193 197 9.915629 TGTTTTAGTGTTGTTTTGAAGTTGTAT 57.084 25.926 0.00 0.00 0.00 2.29
195 199 7.707035 TGTGTTTTAGTGTTGTTTTGAAGTTGT 59.293 29.630 0.00 0.00 0.00 3.32
196 200 8.066668 TGTGTTTTAGTGTTGTTTTGAAGTTG 57.933 30.769 0.00 0.00 0.00 3.16
197 201 8.707839 CATGTGTTTTAGTGTTGTTTTGAAGTT 58.292 29.630 0.00 0.00 0.00 2.66
199 203 8.459521 TCATGTGTTTTAGTGTTGTTTTGAAG 57.540 30.769 0.00 0.00 0.00 3.02
200 204 8.818141 TTCATGTGTTTTAGTGTTGTTTTGAA 57.182 26.923 0.00 0.00 0.00 2.69
201 205 8.818141 TTTCATGTGTTTTAGTGTTGTTTTGA 57.182 26.923 0.00 0.00 0.00 2.69
202 206 7.687757 GCTTTCATGTGTTTTAGTGTTGTTTTG 59.312 33.333 0.00 0.00 0.00 2.44
203 207 7.386299 TGCTTTCATGTGTTTTAGTGTTGTTTT 59.614 29.630 0.00 0.00 0.00 2.43
204 208 6.870965 TGCTTTCATGTGTTTTAGTGTTGTTT 59.129 30.769 0.00 0.00 0.00 2.83
205 209 6.393990 TGCTTTCATGTGTTTTAGTGTTGTT 58.606 32.000 0.00 0.00 0.00 2.83
206 210 5.960113 TGCTTTCATGTGTTTTAGTGTTGT 58.040 33.333 0.00 0.00 0.00 3.32
207 211 6.696583 TGATGCTTTCATGTGTTTTAGTGTTG 59.303 34.615 0.00 0.00 31.96 3.33
231 235 9.078990 TCATATAGAATCCTACGGGCTATATTG 57.921 37.037 0.00 0.00 34.31 1.90
233 237 8.670490 TCTCATATAGAATCCTACGGGCTATAT 58.330 37.037 0.00 0.00 35.97 0.86
315 319 0.539438 GAGGTGGTCCCATGCAACAA 60.539 55.000 0.00 0.00 34.66 2.83
344 348 0.184451 CTATGCACTGCCCCAAGGAT 59.816 55.000 0.00 0.00 33.47 3.24
386 391 8.164070 AGACCACACACTTTTCCTTTAGATAAT 58.836 33.333 0.00 0.00 0.00 1.28
392 397 4.165372 AGGAGACCACACACTTTTCCTTTA 59.835 41.667 0.00 0.00 29.60 1.85
394 399 2.509964 AGGAGACCACACACTTTTCCTT 59.490 45.455 0.00 0.00 29.60 3.36
396 401 2.640316 AGGAGACCACACACTTTTCC 57.360 50.000 0.00 0.00 0.00 3.13
411 416 0.044244 TTTCCTGGGGGAGGTAGGAG 59.956 60.000 0.00 0.00 43.29 3.69
416 421 0.178831 ACATCTTTCCTGGGGGAGGT 60.179 55.000 0.00 0.00 43.29 3.85
438 443 6.582677 TTTCGGAGAAATTTAATTCAGGCA 57.417 33.333 0.00 0.00 45.90 4.75
457 462 9.604626 GCTTCAAGGATTTTCATAGATATTTCG 57.395 33.333 0.00 0.00 0.00 3.46
463 468 7.114754 TCACAGCTTCAAGGATTTTCATAGAT 58.885 34.615 0.00 0.00 0.00 1.98
470 475 5.976458 TGTTTTCACAGCTTCAAGGATTTT 58.024 33.333 0.00 0.00 0.00 1.82
476 481 4.766969 GCTTTGTTTTCACAGCTTCAAG 57.233 40.909 0.00 0.00 46.43 3.02
486 491 0.382515 CCCCGTTCGCTTTGTTTTCA 59.617 50.000 0.00 0.00 0.00 2.69
487 492 0.664224 TCCCCGTTCGCTTTGTTTTC 59.336 50.000 0.00 0.00 0.00 2.29
488 493 1.104630 TTCCCCGTTCGCTTTGTTTT 58.895 45.000 0.00 0.00 0.00 2.43
492 499 1.539827 AGAAATTCCCCGTTCGCTTTG 59.460 47.619 0.00 0.00 0.00 2.77
493 500 1.905637 AGAAATTCCCCGTTCGCTTT 58.094 45.000 0.00 0.00 0.00 3.51
498 505 2.156917 ACCGAAAGAAATTCCCCGTTC 58.843 47.619 0.00 0.00 34.34 3.95
501 508 4.976224 AAATACCGAAAGAAATTCCCCG 57.024 40.909 0.00 0.00 34.34 5.73
502 509 7.400599 AGTTAAATACCGAAAGAAATTCCCC 57.599 36.000 0.00 0.00 34.34 4.81
541 548 3.157087 GGGAGATTGTCTCAAAAAGGCA 58.843 45.455 9.01 0.00 45.12 4.75
542 549 3.157087 TGGGAGATTGTCTCAAAAAGGC 58.843 45.455 9.01 0.00 45.12 4.35
548 555 3.795688 AGCTTTGGGAGATTGTCTCAA 57.204 42.857 9.01 0.00 44.50 3.02
549 556 3.795688 AAGCTTTGGGAGATTGTCTCA 57.204 42.857 9.01 0.00 45.12 3.27
550 557 6.765915 ATAAAAGCTTTGGGAGATTGTCTC 57.234 37.500 13.54 0.00 42.66 3.36
551 558 6.721208 TGAATAAAAGCTTTGGGAGATTGTCT 59.279 34.615 13.54 0.00 33.47 3.41
552 559 6.924111 TGAATAAAAGCTTTGGGAGATTGTC 58.076 36.000 13.54 1.68 33.47 3.18
553 560 6.916360 TGAATAAAAGCTTTGGGAGATTGT 57.084 33.333 13.54 0.00 33.47 2.71
554 561 7.645340 CGTATGAATAAAAGCTTTGGGAGATTG 59.355 37.037 13.54 0.00 33.47 2.67
555 562 7.339466 ACGTATGAATAAAAGCTTTGGGAGATT 59.661 33.333 13.54 7.70 34.95 2.40
556 563 6.828785 ACGTATGAATAAAAGCTTTGGGAGAT 59.171 34.615 13.54 5.59 0.00 2.75
557 564 6.177610 ACGTATGAATAAAAGCTTTGGGAGA 58.822 36.000 13.54 0.00 0.00 3.71
558 565 6.093495 TGACGTATGAATAAAAGCTTTGGGAG 59.907 38.462 13.54 0.86 0.00 4.30
559 566 5.941058 TGACGTATGAATAAAAGCTTTGGGA 59.059 36.000 13.54 1.60 0.00 4.37
560 567 6.027749 GTGACGTATGAATAAAAGCTTTGGG 58.972 40.000 13.54 0.00 0.00 4.12
561 568 6.607689 TGTGACGTATGAATAAAAGCTTTGG 58.392 36.000 13.54 0.00 0.00 3.28
562 569 8.577939 CATTGTGACGTATGAATAAAAGCTTTG 58.422 33.333 13.54 0.00 0.00 2.77
563 570 8.296713 ACATTGTGACGTATGAATAAAAGCTTT 58.703 29.630 5.69 5.69 0.00 3.51
564 571 7.816640 ACATTGTGACGTATGAATAAAAGCTT 58.183 30.769 3.11 0.00 0.00 3.74
565 572 7.377766 ACATTGTGACGTATGAATAAAAGCT 57.622 32.000 3.11 0.00 0.00 3.74
566 573 8.447787 AAACATTGTGACGTATGAATAAAAGC 57.552 30.769 3.11 0.00 0.00 3.51
570 577 8.661257 CCTGTAAACATTGTGACGTATGAATAA 58.339 33.333 3.11 0.00 0.00 1.40
571 578 7.279090 CCCTGTAAACATTGTGACGTATGAATA 59.721 37.037 3.11 0.00 0.00 1.75
572 579 6.093495 CCCTGTAAACATTGTGACGTATGAAT 59.907 38.462 3.11 0.00 0.00 2.57
573 580 5.410132 CCCTGTAAACATTGTGACGTATGAA 59.590 40.000 3.11 0.00 0.00 2.57
574 581 4.932799 CCCTGTAAACATTGTGACGTATGA 59.067 41.667 3.11 0.00 0.00 2.15
575 582 4.932799 TCCCTGTAAACATTGTGACGTATG 59.067 41.667 0.00 0.00 0.00 2.39
576 583 4.933400 GTCCCTGTAAACATTGTGACGTAT 59.067 41.667 0.00 0.00 0.00 3.06
577 584 4.309099 GTCCCTGTAAACATTGTGACGTA 58.691 43.478 0.00 0.00 0.00 3.57
578 585 3.135994 GTCCCTGTAAACATTGTGACGT 58.864 45.455 0.00 0.00 0.00 4.34
579 586 2.156891 CGTCCCTGTAAACATTGTGACG 59.843 50.000 8.54 8.54 38.42 4.35
580 587 3.395639 TCGTCCCTGTAAACATTGTGAC 58.604 45.455 0.00 0.00 0.00 3.67
581 588 3.755112 TCGTCCCTGTAAACATTGTGA 57.245 42.857 0.00 0.00 0.00 3.58
582 589 4.062293 TCTTCGTCCCTGTAAACATTGTG 58.938 43.478 0.00 0.00 0.00 3.33
583 590 4.039973 TCTCTTCGTCCCTGTAAACATTGT 59.960 41.667 0.00 0.00 0.00 2.71
584 591 4.566004 TCTCTTCGTCCCTGTAAACATTG 58.434 43.478 0.00 0.00 0.00 2.82
585 592 4.884668 TCTCTTCGTCCCTGTAAACATT 57.115 40.909 0.00 0.00 0.00 2.71
586 593 4.527038 TCTTCTCTTCGTCCCTGTAAACAT 59.473 41.667 0.00 0.00 0.00 2.71
587 594 3.893200 TCTTCTCTTCGTCCCTGTAAACA 59.107 43.478 0.00 0.00 0.00 2.83
588 595 4.516365 TCTTCTCTTCGTCCCTGTAAAC 57.484 45.455 0.00 0.00 0.00 2.01
589 596 4.770531 TGATCTTCTCTTCGTCCCTGTAAA 59.229 41.667 0.00 0.00 0.00 2.01
590 597 4.158025 GTGATCTTCTCTTCGTCCCTGTAA 59.842 45.833 0.00 0.00 0.00 2.41
591 598 3.695060 GTGATCTTCTCTTCGTCCCTGTA 59.305 47.826 0.00 0.00 0.00 2.74
592 599 2.494073 GTGATCTTCTCTTCGTCCCTGT 59.506 50.000 0.00 0.00 0.00 4.00
593 600 2.757868 AGTGATCTTCTCTTCGTCCCTG 59.242 50.000 0.00 0.00 0.00 4.45
594 601 2.757868 CAGTGATCTTCTCTTCGTCCCT 59.242 50.000 0.00 0.00 0.00 4.20
595 602 2.159170 CCAGTGATCTTCTCTTCGTCCC 60.159 54.545 0.00 0.00 0.00 4.46
596 603 2.159170 CCCAGTGATCTTCTCTTCGTCC 60.159 54.545 0.00 0.00 0.00 4.79
597 604 2.494073 ACCCAGTGATCTTCTCTTCGTC 59.506 50.000 0.00 0.00 0.00 4.20
598 605 2.530701 ACCCAGTGATCTTCTCTTCGT 58.469 47.619 0.00 0.00 0.00 3.85
599 606 3.257393 CAACCCAGTGATCTTCTCTTCG 58.743 50.000 0.00 0.00 0.00 3.79
600 607 3.604582 CCAACCCAGTGATCTTCTCTTC 58.395 50.000 0.00 0.00 0.00 2.87
601 608 2.290577 GCCAACCCAGTGATCTTCTCTT 60.291 50.000 0.00 0.00 0.00 2.85
602 609 1.280421 GCCAACCCAGTGATCTTCTCT 59.720 52.381 0.00 0.00 0.00 3.10
603 610 1.280421 AGCCAACCCAGTGATCTTCTC 59.720 52.381 0.00 0.00 0.00 2.87
604 611 1.366319 AGCCAACCCAGTGATCTTCT 58.634 50.000 0.00 0.00 0.00 2.85
605 612 2.206576 AAGCCAACCCAGTGATCTTC 57.793 50.000 0.00 0.00 0.00 2.87
606 613 3.181434 TGTTAAGCCAACCCAGTGATCTT 60.181 43.478 0.00 0.00 36.20 2.40
607 614 2.375174 TGTTAAGCCAACCCAGTGATCT 59.625 45.455 0.00 0.00 36.20 2.75
608 615 2.790433 TGTTAAGCCAACCCAGTGATC 58.210 47.619 0.00 0.00 36.20 2.92
609 616 2.969821 TGTTAAGCCAACCCAGTGAT 57.030 45.000 0.00 0.00 36.20 3.06
610 617 2.738587 TTGTTAAGCCAACCCAGTGA 57.261 45.000 0.00 0.00 36.20 3.41
611 618 3.369546 CTTTGTTAAGCCAACCCAGTG 57.630 47.619 0.00 0.00 36.20 3.66
622 629 1.539388 TGGCCATCACGCTTTGTTAAG 59.461 47.619 0.00 0.00 34.36 1.85
623 630 1.610363 TGGCCATCACGCTTTGTTAA 58.390 45.000 0.00 0.00 0.00 2.01
624 631 1.268352 GTTGGCCATCACGCTTTGTTA 59.732 47.619 6.09 0.00 0.00 2.41
625 632 0.031994 GTTGGCCATCACGCTTTGTT 59.968 50.000 6.09 0.00 0.00 2.83
626 633 1.659794 GTTGGCCATCACGCTTTGT 59.340 52.632 6.09 0.00 0.00 2.83
627 634 1.080569 GGTTGGCCATCACGCTTTG 60.081 57.895 6.09 0.00 34.09 2.77
628 635 2.275380 GGGTTGGCCATCACGCTTT 61.275 57.895 6.09 0.00 36.17 3.51
629 636 2.676471 GGGTTGGCCATCACGCTT 60.676 61.111 6.09 0.00 36.17 4.68
630 637 4.740822 GGGGTTGGCCATCACGCT 62.741 66.667 20.35 0.00 36.17 5.07
632 639 3.877344 TTGGGGGTTGGCCATCACG 62.877 63.158 6.09 0.00 36.17 4.35
633 640 1.535202 TTTGGGGGTTGGCCATCAC 60.535 57.895 6.09 6.97 36.17 3.06
634 641 1.229145 CTTTGGGGGTTGGCCATCA 60.229 57.895 6.09 0.00 36.17 3.07
635 642 0.040499 TACTTTGGGGGTTGGCCATC 59.960 55.000 6.09 5.53 36.17 3.51
636 643 0.715987 ATACTTTGGGGGTTGGCCAT 59.284 50.000 6.09 0.00 36.17 4.40
637 644 0.252012 CATACTTTGGGGGTTGGCCA 60.252 55.000 0.00 0.00 36.17 5.36
638 645 0.040499 TCATACTTTGGGGGTTGGCC 59.960 55.000 0.00 0.00 0.00 5.36
639 646 1.474330 CTCATACTTTGGGGGTTGGC 58.526 55.000 0.00 0.00 0.00 4.52
640 647 1.272425 TGCTCATACTTTGGGGGTTGG 60.272 52.381 0.00 0.00 0.00 3.77
641 648 2.214376 TGCTCATACTTTGGGGGTTG 57.786 50.000 0.00 0.00 0.00 3.77
642 649 2.738743 CATGCTCATACTTTGGGGGTT 58.261 47.619 0.00 0.00 0.00 4.11
643 650 1.686115 GCATGCTCATACTTTGGGGGT 60.686 52.381 11.37 0.00 0.00 4.95
644 651 1.035139 GCATGCTCATACTTTGGGGG 58.965 55.000 11.37 0.00 0.00 5.40
645 652 2.062971 AGCATGCTCATACTTTGGGG 57.937 50.000 16.30 0.00 0.00 4.96
646 653 3.777478 CAAAGCATGCTCATACTTTGGG 58.223 45.455 22.93 0.00 43.45 4.12
659 666 4.046462 GGCACATAATGTAGCAAAGCATG 58.954 43.478 0.00 0.00 0.00 4.06
660 667 3.956199 AGGCACATAATGTAGCAAAGCAT 59.044 39.130 0.00 0.00 0.00 3.79
661 668 3.355378 AGGCACATAATGTAGCAAAGCA 58.645 40.909 0.00 0.00 0.00 3.91
662 669 3.546815 CGAGGCACATAATGTAGCAAAGC 60.547 47.826 0.00 0.00 0.00 3.51
663 670 3.871006 TCGAGGCACATAATGTAGCAAAG 59.129 43.478 0.00 0.00 0.00 2.77
664 671 3.867857 TCGAGGCACATAATGTAGCAAA 58.132 40.909 0.00 0.00 0.00 3.68
665 672 3.535280 TCGAGGCACATAATGTAGCAA 57.465 42.857 0.00 0.00 0.00 3.91
666 673 3.535280 TTCGAGGCACATAATGTAGCA 57.465 42.857 0.00 0.00 0.00 3.49
667 674 5.424121 AATTTCGAGGCACATAATGTAGC 57.576 39.130 0.00 0.00 0.00 3.58
668 675 5.462068 TCGAATTTCGAGGCACATAATGTAG 59.538 40.000 17.08 0.00 44.82 2.74
669 676 5.353111 TCGAATTTCGAGGCACATAATGTA 58.647 37.500 17.08 0.00 44.82 2.29
670 677 4.188462 TCGAATTTCGAGGCACATAATGT 58.812 39.130 17.08 0.00 44.82 2.71
671 678 4.794248 TCGAATTTCGAGGCACATAATG 57.206 40.909 17.08 0.00 44.82 1.90
683 690 6.455646 CCATGAGTTTAGAACCTCGAATTTCG 60.456 42.308 12.54 12.54 42.10 3.46
684 691 6.675728 GCCATGAGTTTAGAACCTCGAATTTC 60.676 42.308 0.00 0.00 0.00 2.17
685 692 5.123979 GCCATGAGTTTAGAACCTCGAATTT 59.876 40.000 0.00 0.00 0.00 1.82
686 693 4.636206 GCCATGAGTTTAGAACCTCGAATT 59.364 41.667 0.00 0.00 0.00 2.17
687 694 4.192317 GCCATGAGTTTAGAACCTCGAAT 58.808 43.478 0.00 0.00 0.00 3.34
688 695 3.007506 TGCCATGAGTTTAGAACCTCGAA 59.992 43.478 0.00 0.00 0.00 3.71
689 696 2.565391 TGCCATGAGTTTAGAACCTCGA 59.435 45.455 0.00 0.00 0.00 4.04
690 697 2.972625 TGCCATGAGTTTAGAACCTCG 58.027 47.619 0.00 0.00 0.00 4.63
691 698 5.705609 TTTTGCCATGAGTTTAGAACCTC 57.294 39.130 0.00 0.00 0.00 3.85
692 699 6.670695 AATTTTGCCATGAGTTTAGAACCT 57.329 33.333 0.00 0.00 0.00 3.50
693 700 7.375053 TGTAATTTTGCCATGAGTTTAGAACC 58.625 34.615 0.00 0.00 0.00 3.62
694 701 8.810652 TTGTAATTTTGCCATGAGTTTAGAAC 57.189 30.769 0.00 0.00 0.00 3.01
695 702 8.855110 TCTTGTAATTTTGCCATGAGTTTAGAA 58.145 29.630 0.00 0.00 0.00 2.10
696 703 8.402798 TCTTGTAATTTTGCCATGAGTTTAGA 57.597 30.769 0.00 0.00 0.00 2.10
699 706 9.995003 TTTATCTTGTAATTTTGCCATGAGTTT 57.005 25.926 0.00 0.00 0.00 2.66
700 707 9.995003 TTTTATCTTGTAATTTTGCCATGAGTT 57.005 25.926 0.00 0.00 0.00 3.01
701 708 9.995003 TTTTTATCTTGTAATTTTGCCATGAGT 57.005 25.926 0.00 0.00 0.00 3.41
704 711 9.991388 CCATTTTTATCTTGTAATTTTGCCATG 57.009 29.630 0.00 0.00 0.00 3.66
705 712 9.956640 TCCATTTTTATCTTGTAATTTTGCCAT 57.043 25.926 0.00 0.00 0.00 4.40
706 713 9.434420 CTCCATTTTTATCTTGTAATTTTGCCA 57.566 29.630 0.00 0.00 0.00 4.92
707 714 8.390354 GCTCCATTTTTATCTTGTAATTTTGCC 58.610 33.333 0.00 0.00 0.00 4.52
708 715 9.154847 AGCTCCATTTTTATCTTGTAATTTTGC 57.845 29.630 0.00 0.00 0.00 3.68
725 732 8.720562 GCAAAAATGTTAAATACAGCTCCATTT 58.279 29.630 7.12 7.12 40.83 2.32
726 733 8.096414 AGCAAAAATGTTAAATACAGCTCCATT 58.904 29.630 0.00 0.00 40.83 3.16
727 734 7.546667 CAGCAAAAATGTTAAATACAGCTCCAT 59.453 33.333 0.00 0.00 40.83 3.41
728 735 6.867816 CAGCAAAAATGTTAAATACAGCTCCA 59.132 34.615 0.00 0.00 40.83 3.86
729 736 6.868339 ACAGCAAAAATGTTAAATACAGCTCC 59.132 34.615 0.00 0.00 40.83 4.70
730 737 7.873739 ACAGCAAAAATGTTAAATACAGCTC 57.126 32.000 0.00 0.00 40.83 4.09
731 738 7.710475 ACAACAGCAAAAATGTTAAATACAGCT 59.290 29.630 0.00 0.00 40.83 4.24
732 739 7.793427 CACAACAGCAAAAATGTTAAATACAGC 59.207 33.333 0.00 0.00 40.83 4.40
733 740 8.274939 CCACAACAGCAAAAATGTTAAATACAG 58.725 33.333 0.00 0.00 40.83 2.74
734 741 7.766278 ACCACAACAGCAAAAATGTTAAATACA 59.234 29.630 0.00 0.00 38.80 2.29
735 742 8.061268 CACCACAACAGCAAAAATGTTAAATAC 58.939 33.333 0.00 0.00 38.80 1.89
736 743 7.254590 GCACCACAACAGCAAAAATGTTAAATA 60.255 33.333 0.00 0.00 38.80 1.40
737 744 6.458070 GCACCACAACAGCAAAAATGTTAAAT 60.458 34.615 0.00 0.00 38.80 1.40
738 745 5.163814 GCACCACAACAGCAAAAATGTTAAA 60.164 36.000 0.00 0.00 38.80 1.52
739 746 4.331168 GCACCACAACAGCAAAAATGTTAA 59.669 37.500 0.00 0.00 38.80 2.01
740 747 3.868077 GCACCACAACAGCAAAAATGTTA 59.132 39.130 0.00 0.00 38.80 2.41
827 841 5.878116 TGGATTCCTAGATAAACGGTTGTTG 59.122 40.000 3.95 0.00 38.62 3.33
828 842 6.057321 TGGATTCCTAGATAAACGGTTGTT 57.943 37.500 3.95 0.00 40.98 2.83
829 843 5.687166 TGGATTCCTAGATAAACGGTTGT 57.313 39.130 3.95 0.00 0.00 3.32
837 851 7.039223 GGTCGGAGTTAATGGATTCCTAGATAA 60.039 40.741 3.95 0.00 0.00 1.75
971 985 1.148048 GGCAGAAGGGAGGATGAGC 59.852 63.158 0.00 0.00 0.00 4.26
975 989 1.074167 ATCGGGCAGAAGGGAGGAT 60.074 57.895 0.00 0.00 0.00 3.24
976 990 1.762460 GATCGGGCAGAAGGGAGGA 60.762 63.158 0.00 0.00 0.00 3.71
977 991 2.066393 TGATCGGGCAGAAGGGAGG 61.066 63.158 0.00 0.00 0.00 4.30
987 1001 0.468029 AAATGGGGATGTGATCGGGC 60.468 55.000 0.00 0.00 0.00 6.13
1001 1015 1.379642 GCGGAGGAGAGGCAAAATGG 61.380 60.000 0.00 0.00 0.00 3.16
1020 1034 0.170116 GTGTGTGGAGAGAGAGAGCG 59.830 60.000 0.00 0.00 0.00 5.03
1021 1035 1.067915 GTGTGTGTGGAGAGAGAGAGC 60.068 57.143 0.00 0.00 0.00 4.09
1022 1036 2.030363 GTGTGTGTGTGGAGAGAGAGAG 60.030 54.545 0.00 0.00 0.00 3.20
1023 1037 1.957177 GTGTGTGTGTGGAGAGAGAGA 59.043 52.381 0.00 0.00 0.00 3.10
1024 1038 1.683385 TGTGTGTGTGTGGAGAGAGAG 59.317 52.381 0.00 0.00 0.00 3.20
1025 1039 1.409064 GTGTGTGTGTGTGGAGAGAGA 59.591 52.381 0.00 0.00 0.00 3.10
1046 1060 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1054 1068 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1064 1078 1.270571 TGTGTGTCTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
1065 1079 1.128507 GTGTGTGTCTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
1066 1080 1.001974 AGTGTGTGTCTGTGTGTGTGT 59.998 47.619 0.00 0.00 0.00 3.72
1067 1081 1.725641 AGTGTGTGTCTGTGTGTGTG 58.274 50.000 0.00 0.00 0.00 3.82
1068 1082 2.346803 GAAGTGTGTGTCTGTGTGTGT 58.653 47.619 0.00 0.00 0.00 3.72
1069 1083 1.665679 GGAAGTGTGTGTCTGTGTGTG 59.334 52.381 0.00 0.00 0.00 3.82
1070 1084 1.739035 CGGAAGTGTGTGTCTGTGTGT 60.739 52.381 0.00 0.00 0.00 3.72
1071 1085 0.930310 CGGAAGTGTGTGTCTGTGTG 59.070 55.000 0.00 0.00 0.00 3.82
1072 1086 0.821517 TCGGAAGTGTGTGTCTGTGT 59.178 50.000 0.00 0.00 0.00 3.72
1073 1087 2.061773 GATCGGAAGTGTGTGTCTGTG 58.938 52.381 0.00 0.00 0.00 3.66
1074 1088 1.964223 AGATCGGAAGTGTGTGTCTGT 59.036 47.619 0.00 0.00 0.00 3.41
1075 1089 2.732412 AGATCGGAAGTGTGTGTCTG 57.268 50.000 0.00 0.00 0.00 3.51
1076 1090 3.572682 TGTAAGATCGGAAGTGTGTGTCT 59.427 43.478 0.00 0.00 0.00 3.41
1077 1091 3.909430 TGTAAGATCGGAAGTGTGTGTC 58.091 45.455 0.00 0.00 0.00 3.67
1078 1092 4.537135 ATGTAAGATCGGAAGTGTGTGT 57.463 40.909 0.00 0.00 0.00 3.72
1079 1093 5.621422 CAAATGTAAGATCGGAAGTGTGTG 58.379 41.667 0.00 0.00 0.00 3.82
1080 1094 4.154195 GCAAATGTAAGATCGGAAGTGTGT 59.846 41.667 0.00 0.00 0.00 3.72
1081 1095 4.393062 AGCAAATGTAAGATCGGAAGTGTG 59.607 41.667 0.00 0.00 0.00 3.82
1082 1096 4.579869 AGCAAATGTAAGATCGGAAGTGT 58.420 39.130 0.00 0.00 0.00 3.55
1083 1097 4.872691 AGAGCAAATGTAAGATCGGAAGTG 59.127 41.667 0.00 0.00 0.00 3.16
1084 1098 4.872691 CAGAGCAAATGTAAGATCGGAAGT 59.127 41.667 0.00 0.00 0.00 3.01
1147 1473 1.818060 CTCCATCTCTATCTGCTCGGG 59.182 57.143 0.00 0.00 0.00 5.14
1157 1483 0.760567 ATGCACGGCCTCCATCTCTA 60.761 55.000 0.00 0.00 0.00 2.43
1468 1797 1.530655 AACTGCGAGGGGTTTTGGG 60.531 57.895 0.00 0.00 0.00 4.12
1480 1809 3.742290 CAGTTTCTCTGCAACTGCG 57.258 52.632 2.70 0.00 43.48 5.18
1722 2079 8.577939 CATGTGCAATTACTATTTGAAACGAAG 58.422 33.333 0.00 0.00 0.00 3.79
1726 2083 7.816945 AGCATGTGCAATTACTATTTGAAAC 57.183 32.000 7.83 0.00 45.16 2.78
1741 2101 0.592637 CACTTCGGAAAGCATGTGCA 59.407 50.000 7.83 0.00 45.16 4.57
1786 2159 3.156293 AGAGATCTCCATCATCTCACGG 58.844 50.000 19.30 0.00 46.14 4.94
1872 2458 2.159819 AATCGGACGCTGTGCACTCT 62.160 55.000 19.41 0.00 0.00 3.24
1925 2511 2.038659 TCACGCCATCATCATCACCTA 58.961 47.619 0.00 0.00 0.00 3.08
1930 2516 1.197036 CAGCATCACGCCATCATCATC 59.803 52.381 0.00 0.00 44.04 2.92
1931 2517 1.235724 CAGCATCACGCCATCATCAT 58.764 50.000 0.00 0.00 44.04 2.45
1932 2518 1.441732 GCAGCATCACGCCATCATCA 61.442 55.000 0.00 0.00 44.04 3.07
1956 2542 5.957842 CCAGAACAAAATTACTACTGGCA 57.042 39.130 0.00 0.00 37.27 4.92
2022 2608 0.610232 GGCATGCCCAGTTCTGAACT 60.610 55.000 27.24 17.00 44.06 3.01
2035 2621 3.704908 GAACACCATGGCGGCATGC 62.705 63.158 38.45 24.27 45.38 4.06
2060 2646 4.147449 CCAGATCAGGCACGGCGA 62.147 66.667 16.62 0.00 0.00 5.54
2073 2659 1.805943 CAATGTTGTGCACGATCCAGA 59.194 47.619 10.68 0.00 0.00 3.86
2121 2707 1.448540 CGCGCATCCCTGAGTCTTT 60.449 57.895 8.75 0.00 0.00 2.52
2264 2865 4.467062 GCAGAAGGCTTTCCGCGC 62.467 66.667 4.73 0.00 40.44 6.86
2601 3223 2.027192 GGACTGGAATGTGTAGAAGGCA 60.027 50.000 0.00 0.00 0.00 4.75
2609 3231 1.628340 TCCAATCGGACTGGAATGTGT 59.372 47.619 5.58 0.00 40.08 3.72
2611 3233 1.407437 GCTCCAATCGGACTGGAATGT 60.407 52.381 9.72 0.00 42.43 2.71
2612 3234 1.134280 AGCTCCAATCGGACTGGAATG 60.134 52.381 9.72 0.11 42.43 2.67
2613 3235 1.207791 AGCTCCAATCGGACTGGAAT 58.792 50.000 9.72 0.00 42.43 3.01
2615 3237 0.537188 GAAGCTCCAATCGGACTGGA 59.463 55.000 8.06 8.06 40.77 3.86
2616 3238 0.807667 CGAAGCTCCAATCGGACTGG 60.808 60.000 0.00 0.00 35.91 4.00
2617 3239 0.173481 TCGAAGCTCCAATCGGACTG 59.827 55.000 5.75 0.00 39.45 3.51
2618 3240 0.173708 GTCGAAGCTCCAATCGGACT 59.826 55.000 5.75 0.00 39.45 3.85
2619 3241 1.140407 CGTCGAAGCTCCAATCGGAC 61.140 60.000 5.75 2.87 39.45 4.79
2620 3242 1.138883 CGTCGAAGCTCCAATCGGA 59.861 57.895 5.75 0.00 39.45 4.55
2621 3243 0.249073 ATCGTCGAAGCTCCAATCGG 60.249 55.000 0.00 0.00 39.45 4.18
2622 3244 1.518929 GAATCGTCGAAGCTCCAATCG 59.481 52.381 0.00 0.00 40.31 3.34
2623 3245 2.537625 CAGAATCGTCGAAGCTCCAATC 59.462 50.000 0.00 0.00 0.00 2.67
2624 3246 2.544685 CAGAATCGTCGAAGCTCCAAT 58.455 47.619 0.00 0.00 0.00 3.16
2625 3247 1.996292 CAGAATCGTCGAAGCTCCAA 58.004 50.000 0.00 0.00 0.00 3.53
2626 3248 0.458543 GCAGAATCGTCGAAGCTCCA 60.459 55.000 0.00 0.00 0.00 3.86
2627 3249 1.148759 GGCAGAATCGTCGAAGCTCC 61.149 60.000 0.00 0.64 0.00 4.70
2628 3250 0.179124 AGGCAGAATCGTCGAAGCTC 60.179 55.000 0.00 0.00 0.00 4.09
2629 3251 0.247736 AAGGCAGAATCGTCGAAGCT 59.752 50.000 0.00 0.00 0.00 3.74
2662 3284 0.105224 TCCAAGGCAGAAACGTCGAA 59.895 50.000 0.00 0.00 0.00 3.71
2669 3291 2.270352 ATTGACGTCCAAGGCAGAAA 57.730 45.000 14.12 0.00 38.31 2.52
2670 3292 3.071479 GTTATTGACGTCCAAGGCAGAA 58.929 45.455 14.12 0.00 38.31 3.02
2671 3293 2.301870 AGTTATTGACGTCCAAGGCAGA 59.698 45.455 14.12 0.00 38.31 4.26
2672 3294 2.699954 AGTTATTGACGTCCAAGGCAG 58.300 47.619 14.12 0.00 38.31 4.85
2673 3295 2.851263 AGTTATTGACGTCCAAGGCA 57.149 45.000 14.12 0.00 38.31 4.75
2674 3296 2.093783 CGAAGTTATTGACGTCCAAGGC 59.906 50.000 14.12 0.69 38.31 4.35
2675 3297 3.367025 GTCGAAGTTATTGACGTCCAAGG 59.633 47.826 14.12 0.00 38.31 3.61
2676 3298 4.563524 GTCGAAGTTATTGACGTCCAAG 57.436 45.455 14.12 0.00 38.31 3.61
2688 3310 5.179045 AGAAGACAGAAACGTCGAAGTTA 57.821 39.130 17.05 0.00 40.98 2.24
2698 3320 4.067896 TCTCATGCCAAGAAGACAGAAAC 58.932 43.478 0.00 0.00 0.00 2.78
2705 3327 4.654915 TCAAACATCTCATGCCAAGAAGA 58.345 39.130 0.00 0.00 0.00 2.87
2712 3334 5.633830 TCTCTTTTCAAACATCTCATGCC 57.366 39.130 0.00 0.00 0.00 4.40
2742 3387 5.752955 CCAGCTGCTTCTCTAATTTCTACTC 59.247 44.000 8.66 0.00 0.00 2.59
2781 3429 0.041833 CTTCCCTCCTCTGTCCCTCA 59.958 60.000 0.00 0.00 0.00 3.86
2782 3430 0.336737 TCTTCCCTCCTCTGTCCCTC 59.663 60.000 0.00 0.00 0.00 4.30
2823 3492 6.823689 TCTTATGTCCTAAATTTCAGACCTGC 59.176 38.462 14.61 0.00 0.00 4.85
2852 3521 3.264845 GGGTGAAGGGGGAGGCAA 61.265 66.667 0.00 0.00 0.00 4.52
2857 3528 0.479589 AGAATTGGGGTGAAGGGGGA 60.480 55.000 0.00 0.00 0.00 4.81
3020 3951 5.819825 TCTATGTCCAATATCTCGATCGG 57.180 43.478 16.41 6.26 0.00 4.18
3077 4008 6.822667 TGATTTTGTGTCACAGCTGATTAT 57.177 33.333 23.35 0.00 0.00 1.28
3094 4025 8.813282 GTGTAACAAAAGGATTCGTTTGATTTT 58.187 29.630 17.94 5.85 42.30 1.82
3099 4030 6.291585 GCAAGTGTAACAAAAGGATTCGTTTG 60.292 38.462 10.48 10.48 44.21 2.93
3119 4050 2.093500 TGCGAGATCATGTAAGGCAAGT 60.093 45.455 0.00 0.00 0.00 3.16
3124 4055 5.334414 GGCTTATTTGCGAGATCATGTAAGG 60.334 44.000 0.00 0.00 0.00 2.69
3178 4116 7.997773 TCTTGATGAACACAGTACTAGTAGT 57.002 36.000 8.14 8.14 0.00 2.73
3179 4117 8.678199 TCATCTTGATGAACACAGTACTAGTAG 58.322 37.037 10.50 0.00 0.00 2.57
3180 4118 8.575649 TCATCTTGATGAACACAGTACTAGTA 57.424 34.615 10.50 0.00 0.00 1.82
3181 4119 7.468141 TCATCTTGATGAACACAGTACTAGT 57.532 36.000 10.50 0.00 0.00 2.57
3243 4182 1.087771 CGAGGGGGCAACGTATGAAC 61.088 60.000 0.00 0.00 37.60 3.18
3245 4184 1.672854 CTCGAGGGGGCAACGTATGA 61.673 60.000 3.91 0.00 37.60 2.15
3246 4185 1.227263 CTCGAGGGGGCAACGTATG 60.227 63.158 3.91 0.00 37.60 2.39
3247 4186 3.090219 GCTCGAGGGGGCAACGTAT 62.090 63.158 15.58 0.00 37.60 3.06
3248 4187 3.766691 GCTCGAGGGGGCAACGTA 61.767 66.667 15.58 0.00 37.60 3.57
3261 4200 1.238439 ATTTCACACTGTTGGGCTCG 58.762 50.000 0.00 0.00 0.00 5.03
3262 4201 2.887152 AGAATTTCACACTGTTGGGCTC 59.113 45.455 0.00 0.00 0.00 4.70
3295 4234 3.117888 TCAAGTTTTCCTCTGGTCTTGCT 60.118 43.478 0.00 0.00 34.30 3.91
3326 4266 7.031975 GCTTGCTATACATTCAAAGAAAGCTT 58.968 34.615 6.64 0.00 44.13 3.74
3342 4282 5.303165 CATGACAATGAGAGGCTTGCTATA 58.697 41.667 0.00 0.00 35.67 1.31
3344 4284 3.538591 CATGACAATGAGAGGCTTGCTA 58.461 45.455 0.00 0.00 35.67 3.49
3345 4285 2.366533 CATGACAATGAGAGGCTTGCT 58.633 47.619 0.00 0.00 35.67 3.91
3346 4286 1.202268 GCATGACAATGAGAGGCTTGC 60.202 52.381 0.00 0.00 35.67 4.01
3347 4287 2.089201 TGCATGACAATGAGAGGCTTG 58.911 47.619 0.00 0.00 35.67 4.01
3358 4298 4.940654 TCGTATTGATTCCTTGCATGACAA 59.059 37.500 0.00 0.00 36.62 3.18
3379 4319 1.284715 GAACCGGGCCAACTTTTCG 59.715 57.895 6.32 0.00 0.00 3.46
3481 4421 3.054361 ACCATGGACTATTTCTGTGTCCC 60.054 47.826 21.47 0.00 46.97 4.46
3515 4455 7.093552 CCTCCTGCTTATTCATACTAGTAGCAT 60.094 40.741 13.20 5.81 36.66 3.79
3606 4546 0.929824 GACGACGACGAACGAAACCA 60.930 55.000 15.32 0.00 45.77 3.67
3627 4567 4.470462 CTCGTCTGCAATTTTTCTGAAGG 58.530 43.478 0.00 0.00 0.00 3.46
3634 4574 0.310543 TGCGCTCGTCTGCAATTTTT 59.689 45.000 9.73 0.00 38.34 1.94
3691 4631 4.400251 GGCAAATTGGAAGACTGATGATGA 59.600 41.667 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.