Multiple sequence alignment - TraesCS5D01G190300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G190300 chr5D 100.000 5451 0 0 1 5451 292699914 292694464 0.000000e+00 10067.0
1 TraesCS5D01G190300 chr5D 90.909 132 11 1 5205 5335 58318291 58318160 5.610000e-40 176.0
2 TraesCS5D01G190300 chr5D 76.203 395 53 23 3637 4026 445183756 445184114 2.610000e-38 171.0
3 TraesCS5D01G190300 chr5B 90.015 3385 177 59 1931 5201 333254839 333251502 0.000000e+00 4229.0
4 TraesCS5D01G190300 chr5B 94.731 1955 82 13 1 1945 333257743 333255800 0.000000e+00 3020.0
5 TraesCS5D01G190300 chr5B 78.385 384 43 14 3636 3990 571176457 571176829 4.280000e-51 213.0
6 TraesCS5D01G190300 chr5B 76.751 357 44 20 3640 3974 382316655 382316316 4.370000e-36 163.0
7 TraesCS5D01G190300 chr5B 100.000 38 0 0 5343 5380 143640067 143640030 2.720000e-08 71.3
8 TraesCS5D01G190300 chr5A 89.824 2211 97 56 17 2163 385399704 385397558 0.000000e+00 2719.0
9 TraesCS5D01G190300 chr5A 83.522 1414 151 37 2202 3566 385397422 385396042 0.000000e+00 1245.0
10 TraesCS5D01G190300 chr5A 93.058 533 33 2 4042 4574 385395870 385395342 0.000000e+00 776.0
11 TraesCS5D01G190300 chr5A 79.021 429 52 14 3627 4026 579918682 579919101 5.420000e-65 259.0
12 TraesCS5D01G190300 chr2D 80.387 724 110 28 1165 1874 470000048 470000753 6.260000e-144 521.0
13 TraesCS5D01G190300 chr2D 83.673 343 51 3 4113 4451 470000778 470001119 8.810000e-83 318.0
14 TraesCS5D01G190300 chr2D 90.299 134 10 3 5214 5345 435901643 435901511 7.260000e-39 172.0
15 TraesCS5D01G190300 chr2A 80.303 726 107 31 1165 1874 611310441 611311146 2.910000e-142 516.0
16 TraesCS5D01G190300 chr2A 83.382 343 52 3 4113 4451 611311171 611311512 4.100000e-81 313.0
17 TraesCS5D01G190300 chr2A 93.103 58 0 2 5323 5380 140175443 140175390 1.260000e-11 82.4
18 TraesCS5D01G190300 chr2A 88.889 54 3 1 5327 5380 140137933 140137883 4.560000e-06 63.9
19 TraesCS5D01G190300 chr2A 100.000 34 0 0 5347 5380 581059456 581059423 4.560000e-06 63.9
20 TraesCS5D01G190300 chr2B 79.201 726 115 27 1165 1874 548650768 548651473 6.390000e-129 472.0
21 TraesCS5D01G190300 chr2B 82.456 342 57 1 4113 4451 548651498 548651839 4.130000e-76 296.0
22 TraesCS5D01G190300 chr2B 76.092 435 59 24 3625 4026 680585292 680585714 9.320000e-43 185.0
23 TraesCS5D01G190300 chr7A 80.751 426 45 13 3629 4026 75671393 75671809 1.150000e-76 298.0
24 TraesCS5D01G190300 chr3D 83.692 325 34 9 3718 4029 5869438 5869120 6.910000e-74 289.0
25 TraesCS5D01G190300 chr3D 88.811 143 14 2 5209 5349 137777462 137777604 2.020000e-39 174.0
26 TraesCS5D01G190300 chr3D 87.919 149 17 1 5199 5347 459518056 459518203 2.020000e-39 174.0
27 TraesCS5D01G190300 chr1B 83.483 333 26 10 3718 4028 263981352 263981677 3.210000e-72 283.0
28 TraesCS5D01G190300 chr1B 76.112 427 49 22 3629 4025 473562291 473561888 2.020000e-39 174.0
29 TraesCS5D01G190300 chr1B 97.500 40 0 1 5342 5380 467518710 467518671 3.520000e-07 67.6
30 TraesCS5D01G190300 chr7D 79.433 423 52 14 3629 4023 631955945 631956360 3.240000e-67 267.0
31 TraesCS5D01G190300 chr1A 81.902 326 30 14 3720 4024 511011461 511011778 1.170000e-61 248.0
32 TraesCS5D01G190300 chr1A 85.816 141 14 2 3723 3862 511011053 511011188 1.580000e-30 145.0
33 TraesCS5D01G190300 chr4A 81.325 332 35 9 3718 4027 596787720 596787394 1.520000e-60 244.0
34 TraesCS5D01G190300 chr4A 87.500 56 4 3 5327 5380 707736 707682 1.640000e-05 62.1
35 TraesCS5D01G190300 chr4B 80.415 337 40 8 3718 4029 617326663 617326328 3.280000e-57 233.0
36 TraesCS5D01G190300 chr3A 86.667 180 18 6 3847 4024 466113928 466114103 1.550000e-45 195.0
37 TraesCS5D01G190300 chr3A 89.209 139 14 1 5214 5352 389596255 389596392 7.260000e-39 172.0
38 TraesCS5D01G190300 chr6A 81.667 240 28 7 3627 3859 85568870 85568640 9.320000e-43 185.0
39 TraesCS5D01G190300 chr6D 90.511 137 12 1 5214 5349 287907167 287907303 4.340000e-41 180.0
40 TraesCS5D01G190300 chr4D 86.047 172 18 6 5214 5380 470022841 470023011 4.340000e-41 180.0
41 TraesCS5D01G190300 chr1D 88.811 143 14 2 5210 5351 444449831 444449690 2.020000e-39 174.0
42 TraesCS5D01G190300 chr1D 89.781 137 13 1 5214 5349 454935844 454935708 2.020000e-39 174.0
43 TraesCS5D01G190300 chr6B 95.455 44 2 0 1 44 1275929 1275972 2.720000e-08 71.3
44 TraesCS5D01G190300 chr6B 89.474 57 4 2 5325 5380 682506110 682506165 2.720000e-08 71.3
45 TraesCS5D01G190300 chr3B 89.091 55 2 2 5326 5380 727391070 727391120 1.270000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G190300 chr5D 292694464 292699914 5450 True 10067.0 10067 100.000000 1 5451 1 chr5D.!!$R2 5450
1 TraesCS5D01G190300 chr5B 333251502 333257743 6241 True 3624.5 4229 92.373000 1 5201 2 chr5B.!!$R3 5200
2 TraesCS5D01G190300 chr5A 385395342 385399704 4362 True 1580.0 2719 88.801333 17 4574 3 chr5A.!!$R1 4557
3 TraesCS5D01G190300 chr2D 470000048 470001119 1071 False 419.5 521 82.030000 1165 4451 2 chr2D.!!$F1 3286
4 TraesCS5D01G190300 chr2A 611310441 611311512 1071 False 414.5 516 81.842500 1165 4451 2 chr2A.!!$F1 3286
5 TraesCS5D01G190300 chr2B 548650768 548651839 1071 False 384.0 472 80.828500 1165 4451 2 chr2B.!!$F2 3286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 132 0.175531 GTTTTCATCCCCAATGCCCG 59.824 55.000 0.00 0.00 35.17 6.13 F
125 133 0.252012 TTTTCATCCCCAATGCCCGT 60.252 50.000 0.00 0.00 35.17 5.28 F
212 220 0.674581 AGCCACCACATGTCATCACG 60.675 55.000 0.00 0.00 0.00 4.35 F
928 950 1.205893 ACGAGAGGCAATCTTCTGGTC 59.794 52.381 0.00 0.00 38.84 4.02 F
1925 1963 0.324614 TTGCTGGCTTGCTAGCTACA 59.675 50.000 26.35 12.14 46.90 2.74 F
1929 1967 0.606096 TGGCTTGCTAGCTACAACGA 59.394 50.000 19.45 0.00 46.90 3.85 F
1930 1968 1.207089 TGGCTTGCTAGCTACAACGAT 59.793 47.619 19.45 0.00 46.90 3.73 F
1984 3025 1.540267 GAAGGTCATAGCCGCTCGATA 59.460 52.381 0.00 0.00 0.00 2.92 F
3743 4984 3.073274 AGTAAACAAGGATGTGAGGCC 57.927 47.619 0.00 0.00 40.46 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1332 0.622665 CCTTGTCCTCCAGCCATTCT 59.377 55.000 0.00 0.00 0.00 2.40 R
1461 1488 1.079127 CTCGTTGGCGGTCCAGATT 60.079 57.895 0.00 0.00 44.53 2.40 R
1840 1876 1.153147 GAAAGCGTCCTCCCATCCC 60.153 63.158 0.00 0.00 0.00 3.85 R
2818 4031 1.059584 TGTGGTGTGGTGTCCTGGAT 61.060 55.000 0.00 0.00 0.00 3.41 R
3732 4973 1.210478 ACACACATAGGCCTCACATCC 59.790 52.381 9.68 0.00 0.00 3.51 R
3835 5076 6.865834 AAATCTGGGGCATTTTAACACATA 57.134 33.333 0.00 0.00 0.00 2.29 R
3864 5105 8.788806 TGTGTAAATTTTCAGGACGAAATACAT 58.211 29.630 0.00 0.00 43.12 2.29 R
3980 5242 2.645838 TCATGGAGGCCTCTAAATGC 57.354 50.000 31.36 14.67 0.00 3.56 R
5419 6713 0.033601 TCAACCACTTTGTGTGCCCT 60.034 50.000 0.00 0.00 44.92 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.936202 GCCATATGCCCATATCCGAAT 58.064 47.619 0.00 0.00 31.98 3.34
97 105 4.822896 TGCTAGTTTTACATCCAACGGTTT 59.177 37.500 0.00 0.00 0.00 3.27
103 111 1.234615 ACATCCAACGGTTTGCCTCG 61.235 55.000 0.00 0.00 0.00 4.63
117 125 1.376683 CCTCGCGTTTTCATCCCCA 60.377 57.895 5.77 0.00 0.00 4.96
118 126 0.958382 CCTCGCGTTTTCATCCCCAA 60.958 55.000 5.77 0.00 0.00 4.12
119 127 1.094785 CTCGCGTTTTCATCCCCAAT 58.905 50.000 5.77 0.00 0.00 3.16
120 128 0.808125 TCGCGTTTTCATCCCCAATG 59.192 50.000 5.77 0.00 36.65 2.82
121 129 0.801836 CGCGTTTTCATCCCCAATGC 60.802 55.000 0.00 0.00 35.17 3.56
124 132 0.175531 GTTTTCATCCCCAATGCCCG 59.824 55.000 0.00 0.00 35.17 6.13
125 133 0.252012 TTTTCATCCCCAATGCCCGT 60.252 50.000 0.00 0.00 35.17 5.28
127 135 0.969917 TTCATCCCCAATGCCCGTTG 60.970 55.000 0.00 0.00 35.17 4.10
151 159 1.878522 GCACAGATGGGAGTACGCG 60.879 63.158 3.53 3.53 0.00 6.01
158 166 2.521224 GGGAGTACGCGGAGGGAT 60.521 66.667 12.47 0.00 46.37 3.85
170 178 2.517875 AGGGATCATGCAAGCCGC 60.518 61.111 0.00 0.00 42.89 6.53
173 181 2.325857 GATCATGCAAGCCGCGTC 59.674 61.111 4.92 0.00 46.97 5.19
212 220 0.674581 AGCCACCACATGTCATCACG 60.675 55.000 0.00 0.00 0.00 4.35
433 447 1.288037 ACCTAAAGGGAATCTTGGGGC 59.712 52.381 0.20 0.00 40.27 5.80
520 534 7.989826 AGCCAATGATAGCGATTTTAATATCC 58.010 34.615 0.94 0.00 0.00 2.59
584 601 3.810743 GCCTAGGCTCCTTCACTGAAAAA 60.811 47.826 27.17 0.00 38.26 1.94
690 708 1.297456 GAGCCTCTTCTGCAGCACAC 61.297 60.000 9.47 0.00 0.00 3.82
691 709 1.598962 GCCTCTTCTGCAGCACACA 60.599 57.895 9.47 0.00 0.00 3.72
730 748 4.685020 GTCGCTTTTAGTACAACGACAAG 58.315 43.478 8.32 1.98 46.63 3.16
731 749 3.737266 TCGCTTTTAGTACAACGACAAGG 59.263 43.478 0.00 0.00 0.00 3.61
732 750 3.737266 CGCTTTTAGTACAACGACAAGGA 59.263 43.478 0.00 0.00 0.00 3.36
733 751 4.375706 CGCTTTTAGTACAACGACAAGGAC 60.376 45.833 0.00 0.00 0.00 3.85
734 752 4.508861 GCTTTTAGTACAACGACAAGGACA 59.491 41.667 0.00 0.00 0.00 4.02
786 807 9.074576 ACTTAGTATTTTTCGTTTGAAGGGATT 57.925 29.630 0.00 0.00 35.06 3.01
906 928 5.038683 CCGTTGAAGTTCCCAGTTTAAAAC 58.961 41.667 0.00 0.00 0.00 2.43
928 950 1.205893 ACGAGAGGCAATCTTCTGGTC 59.794 52.381 0.00 0.00 38.84 4.02
1305 1332 2.947532 CGCTGTGAGGGCCAAGAGA 61.948 63.158 6.18 0.00 0.00 3.10
1512 1539 1.478510 CAGAGCGTCTACTTCCACCAT 59.521 52.381 0.00 0.00 0.00 3.55
1605 1632 3.624861 CCTTGTGAAGTGACTATCCATGC 59.375 47.826 0.00 0.00 0.00 4.06
1840 1876 2.136878 CGGGTCCATGAGAGGGAGG 61.137 68.421 0.00 0.00 34.44 4.30
1905 1943 2.556534 ACGAGGTAATACACGTCAGC 57.443 50.000 8.50 0.00 41.23 4.26
1906 1944 2.089980 ACGAGGTAATACACGTCAGCT 58.910 47.619 8.50 0.00 41.23 4.24
1907 1945 2.490903 ACGAGGTAATACACGTCAGCTT 59.509 45.455 8.50 0.00 41.23 3.74
1908 1946 2.852413 CGAGGTAATACACGTCAGCTTG 59.148 50.000 0.00 0.00 41.23 4.01
1909 1947 2.603560 GAGGTAATACACGTCAGCTTGC 59.396 50.000 0.00 0.00 40.92 4.01
1910 1948 2.233922 AGGTAATACACGTCAGCTTGCT 59.766 45.455 0.00 0.00 0.00 3.91
1911 1949 2.348666 GGTAATACACGTCAGCTTGCTG 59.651 50.000 15.74 15.74 0.00 4.41
1912 1950 1.442769 AATACACGTCAGCTTGCTGG 58.557 50.000 20.62 9.54 0.00 4.85
1913 1951 1.021390 ATACACGTCAGCTTGCTGGC 61.021 55.000 20.62 18.51 0.00 4.85
1914 1952 2.099652 TACACGTCAGCTTGCTGGCT 62.100 55.000 22.27 8.79 44.10 4.75
1915 1953 2.111878 ACGTCAGCTTGCTGGCTT 59.888 55.556 22.27 12.43 41.00 4.35
1916 1954 2.256591 ACGTCAGCTTGCTGGCTTG 61.257 57.895 22.27 11.95 41.00 4.01
1917 1955 2.257676 GTCAGCTTGCTGGCTTGC 59.742 61.111 18.58 3.84 41.00 4.01
1918 1956 2.114625 TCAGCTTGCTGGCTTGCT 59.885 55.556 20.62 6.96 41.00 3.91
1919 1957 0.957395 GTCAGCTTGCTGGCTTGCTA 60.957 55.000 18.58 0.00 41.00 3.49
1920 1958 0.675837 TCAGCTTGCTGGCTTGCTAG 60.676 55.000 20.62 1.49 41.00 3.42
1922 1960 4.315588 CTTGCTGGCTTGCTAGCT 57.684 55.556 26.35 0.00 46.90 3.32
1923 1961 3.465990 CTTGCTGGCTTGCTAGCTA 57.534 52.632 26.35 19.85 46.90 3.32
1924 1962 1.012841 CTTGCTGGCTTGCTAGCTAC 58.987 55.000 26.35 9.83 46.90 3.58
1925 1963 0.324614 TTGCTGGCTTGCTAGCTACA 59.675 50.000 26.35 12.14 46.90 2.74
1926 1964 0.324614 TGCTGGCTTGCTAGCTACAA 59.675 50.000 26.35 8.27 46.90 2.41
1927 1965 0.729690 GCTGGCTTGCTAGCTACAAC 59.270 55.000 20.91 3.41 46.90 3.32
1928 1966 1.002366 CTGGCTTGCTAGCTACAACG 58.998 55.000 19.45 0.00 46.90 4.10
1929 1967 0.606096 TGGCTTGCTAGCTACAACGA 59.394 50.000 19.45 0.00 46.90 3.85
1930 1968 1.207089 TGGCTTGCTAGCTACAACGAT 59.793 47.619 19.45 0.00 46.90 3.73
1931 1969 2.280628 GGCTTGCTAGCTACAACGATT 58.719 47.619 19.45 0.00 46.90 3.34
1932 1970 2.678336 GGCTTGCTAGCTACAACGATTT 59.322 45.455 19.45 0.00 46.90 2.17
1984 3025 1.540267 GAAGGTCATAGCCGCTCGATA 59.460 52.381 0.00 0.00 0.00 2.92
2314 3491 9.632807 GGATTGCATAGTACATTTTTGTGTTTA 57.367 29.630 0.00 0.00 33.62 2.01
2415 3593 4.657436 ACTCTCTCCTTATACAAAGCCG 57.343 45.455 0.00 0.00 0.00 5.52
2714 3913 6.135290 TCACATGCTTATTTATTGTGAGGC 57.865 37.500 0.00 0.00 41.11 4.70
2818 4031 7.709182 CCTCGGTTCTACATACAATCAAATACA 59.291 37.037 0.00 0.00 0.00 2.29
3214 4434 9.774742 CTTACAAATAAACTGAAGGATAAGTGC 57.225 33.333 0.00 0.00 0.00 4.40
3280 4500 7.406553 TGTATAATGAAGATTTCGCTTTTCCG 58.593 34.615 0.00 0.00 0.00 4.30
3537 4769 7.201461 GCAATATCATCAAATTTTGTGCTTCGT 60.201 33.333 8.89 0.00 0.00 3.85
3743 4984 3.073274 AGTAAACAAGGATGTGAGGCC 57.927 47.619 0.00 0.00 40.46 5.19
3782 5023 5.879237 TCAGGATGAAATACGTTGAAATGC 58.121 37.500 0.00 0.00 45.97 3.56
3783 5024 5.414144 TCAGGATGAAATACGTTGAAATGCA 59.586 36.000 0.00 0.00 45.97 3.96
3916 5178 3.124297 GTGCGCTATGCTTTCATCTATCC 59.876 47.826 9.73 0.00 46.63 2.59
3917 5179 3.244181 TGCGCTATGCTTTCATCTATCCA 60.244 43.478 9.73 0.00 46.63 3.41
3994 5256 5.897377 TTACTTTTGCATTTAGAGGCCTC 57.103 39.130 26.22 26.22 0.00 4.70
3999 5261 1.845791 TGCATTTAGAGGCCTCCATGA 59.154 47.619 29.11 16.51 0.00 3.07
4024 5286 3.124578 TGGCCTTCAAAAGCAATTTCC 57.875 42.857 3.32 0.00 0.00 3.13
4053 5315 8.370493 TGTATATGTTCTCAAAGAGCAATAGC 57.630 34.615 0.00 0.00 38.90 2.97
4062 5324 2.328819 AGAGCAATAGCAAGCCTCTG 57.671 50.000 0.00 0.00 45.49 3.35
4252 5517 2.361104 GGGATGCACGGCAAGGAA 60.361 61.111 2.68 0.00 43.62 3.36
4497 5762 3.616956 TGATCAGAACACTCCCACATC 57.383 47.619 0.00 0.00 0.00 3.06
4555 5820 3.483574 GGCATTCGAATCAGTACAACACG 60.484 47.826 7.92 0.00 0.00 4.49
4614 5879 1.172812 AGCGCAGTTGAACCTTTCCC 61.173 55.000 11.47 0.00 0.00 3.97
4618 5883 1.067060 GCAGTTGAACCTTTCCCACAC 59.933 52.381 0.00 0.00 0.00 3.82
4621 5886 3.004734 CAGTTGAACCTTTCCCACACATC 59.995 47.826 0.00 0.00 0.00 3.06
4631 5896 2.187946 CACACATCGGAGCTCCCC 59.812 66.667 27.20 3.97 0.00 4.81
4634 5899 2.444895 ACATCGGAGCTCCCCCTC 60.445 66.667 27.20 1.66 0.00 4.30
4636 5901 4.144727 ATCGGAGCTCCCCCTCGT 62.145 66.667 27.20 3.87 32.57 4.18
4647 5912 1.003718 CCCCTCGTTGAACCCTCAC 60.004 63.158 0.00 0.00 0.00 3.51
4649 5914 1.374252 CCTCGTTGAACCCTCACGG 60.374 63.158 0.00 0.00 37.81 4.94
4651 5916 2.030562 CGTTGAACCCTCACGGCT 59.969 61.111 0.00 0.00 33.26 5.52
4653 5918 1.070786 GTTGAACCCTCACGGCTCA 59.929 57.895 0.00 0.00 33.26 4.26
4654 5919 1.070786 TTGAACCCTCACGGCTCAC 59.929 57.895 0.00 0.00 33.26 3.51
4666 5931 2.184579 GCTCACGCCACCTAGGAC 59.815 66.667 17.98 3.31 41.22 3.85
4667 5932 2.352032 GCTCACGCCACCTAGGACT 61.352 63.158 17.98 0.00 41.22 3.85
4668 5933 1.035932 GCTCACGCCACCTAGGACTA 61.036 60.000 17.98 0.00 41.22 2.59
4669 5934 1.025812 CTCACGCCACCTAGGACTAG 58.974 60.000 17.98 6.65 41.22 2.57
4670 5935 0.622136 TCACGCCACCTAGGACTAGA 59.378 55.000 17.98 2.56 41.22 2.43
4671 5936 1.214673 TCACGCCACCTAGGACTAGAT 59.785 52.381 17.98 0.00 41.22 1.98
4672 5937 1.609555 CACGCCACCTAGGACTAGATC 59.390 57.143 17.98 0.00 41.22 2.75
4673 5938 1.214673 ACGCCACCTAGGACTAGATCA 59.785 52.381 17.98 0.00 41.22 2.92
4674 5939 1.609555 CGCCACCTAGGACTAGATCAC 59.390 57.143 17.98 0.00 41.22 3.06
4686 5951 5.596361 AGGACTAGATCACATCGACAAGAAT 59.404 40.000 0.00 0.00 0.00 2.40
4688 5953 7.040755 AGGACTAGATCACATCGACAAGAATAG 60.041 40.741 0.00 0.00 0.00 1.73
4690 5955 7.644490 ACTAGATCACATCGACAAGAATAGTC 58.356 38.462 0.00 0.00 0.00 2.59
4691 5956 6.456795 AGATCACATCGACAAGAATAGTCA 57.543 37.500 0.00 0.00 35.77 3.41
4703 5968 8.326713 CGACAAGAATAGTCATTTCAGATGAAG 58.673 37.037 0.00 0.00 35.77 3.02
4719 5987 5.875910 CAGATGAAGAAGAGCTTGAACTCAT 59.124 40.000 0.00 0.00 39.26 2.90
4730 5998 3.189910 GCTTGAACTCATCATGAAGCACA 59.810 43.478 0.00 0.00 38.65 4.57
4738 6006 6.154445 ACTCATCATGAAGCACAAATTTCAC 58.846 36.000 0.00 0.00 36.26 3.18
4739 6007 6.015688 ACTCATCATGAAGCACAAATTTCACT 60.016 34.615 0.00 0.00 36.26 3.41
4742 6010 5.904941 TCATGAAGCACAAATTTCACTGTT 58.095 33.333 0.00 0.00 36.26 3.16
4744 6012 4.681744 TGAAGCACAAATTTCACTGTTCC 58.318 39.130 0.00 0.00 0.00 3.62
4745 6013 3.354089 AGCACAAATTTCACTGTTCCG 57.646 42.857 0.00 0.00 0.00 4.30
4746 6014 1.786579 GCACAAATTTCACTGTTCCGC 59.213 47.619 0.00 0.00 0.00 5.54
4747 6015 2.797792 GCACAAATTTCACTGTTCCGCA 60.798 45.455 0.00 0.00 0.00 5.69
4748 6016 3.443037 CACAAATTTCACTGTTCCGCAA 58.557 40.909 0.00 0.00 0.00 4.85
4750 6018 3.130340 ACAAATTTCACTGTTCCGCAAGT 59.870 39.130 0.00 0.00 0.00 3.16
4774 6052 1.885887 TGTTGCGCTTGGCTAGAATTT 59.114 42.857 9.73 0.00 44.05 1.82
4778 6056 2.420022 TGCGCTTGGCTAGAATTTTCTC 59.580 45.455 9.73 0.00 44.05 2.87
4781 6059 4.439289 GCGCTTGGCTAGAATTTTCTCAAT 60.439 41.667 0.00 0.00 38.70 2.57
4787 6065 9.443283 CTTGGCTAGAATTTTCTCAATTAATCG 57.557 33.333 0.00 0.00 38.70 3.34
4795 6073 9.502145 GAATTTTCTCAATTAATCGCACACATA 57.498 29.630 0.00 0.00 0.00 2.29
4813 6091 9.645059 GCACACATATACTCATATAGATGTTGT 57.355 33.333 0.00 1.31 35.35 3.32
4825 6103 2.977914 AGATGTTGTCAACCTCATCCG 58.022 47.619 19.29 0.00 37.84 4.18
4842 6120 0.179166 CCGATTGTTGTCATTGGCCG 60.179 55.000 0.00 0.00 0.00 6.13
4844 6122 0.798009 GATTGTTGTCATTGGCCGCG 60.798 55.000 0.00 0.00 0.00 6.46
4871 6149 1.153289 GATCTGTGCCATCCGCTGT 60.153 57.895 0.00 0.00 38.78 4.40
4873 6151 1.902765 ATCTGTGCCATCCGCTGTCA 61.903 55.000 0.00 0.00 38.78 3.58
4881 6159 1.153369 ATCCGCTGTCATGAACCGG 60.153 57.895 18.66 18.66 40.25 5.28
4884 6162 0.744414 CCGCTGTCATGAACCGGATT 60.744 55.000 19.55 0.00 41.34 3.01
4887 6165 2.675844 CGCTGTCATGAACCGGATTAAA 59.324 45.455 9.46 0.00 0.00 1.52
4894 6172 6.183360 TGTCATGAACCGGATTAAAGAAATCG 60.183 38.462 9.46 0.00 44.32 3.34
4898 6176 8.556194 CATGAACCGGATTAAAGAAATCGAATA 58.444 33.333 9.46 0.00 44.32 1.75
4910 6188 8.767944 AAAGAAATCGAATATTCATTACACGC 57.232 30.769 15.57 0.00 0.00 5.34
4911 6189 6.888430 AGAAATCGAATATTCATTACACGCC 58.112 36.000 15.57 0.00 0.00 5.68
4912 6190 6.481976 AGAAATCGAATATTCATTACACGCCA 59.518 34.615 15.57 0.00 0.00 5.69
4922 6200 7.754069 ATTCATTACACGCCAAATATTTGTG 57.246 32.000 23.24 17.86 36.45 3.33
4930 6208 6.751425 ACACGCCAAATATTTGTGAATACATG 59.249 34.615 23.24 13.16 36.53 3.21
4935 6213 8.971321 GCCAAATATTTGTGAATACATGATGAC 58.029 33.333 23.24 0.00 36.53 3.06
5022 6300 9.942850 AAGAAAGAATCAAAAGGAAAGAAACAA 57.057 25.926 0.00 0.00 0.00 2.83
5023 6301 9.942850 AGAAAGAATCAAAAGGAAAGAAACAAA 57.057 25.926 0.00 0.00 0.00 2.83
5153 6447 5.825593 AAATCAGGAGACAACCAAGTAGA 57.174 39.130 0.00 0.00 0.00 2.59
5154 6448 4.810191 ATCAGGAGACAACCAAGTAGAC 57.190 45.455 0.00 0.00 0.00 2.59
5155 6449 3.572642 TCAGGAGACAACCAAGTAGACA 58.427 45.455 0.00 0.00 0.00 3.41
5156 6450 4.160329 TCAGGAGACAACCAAGTAGACAT 58.840 43.478 0.00 0.00 0.00 3.06
5157 6451 5.330233 TCAGGAGACAACCAAGTAGACATA 58.670 41.667 0.00 0.00 0.00 2.29
5159 6453 7.123383 TCAGGAGACAACCAAGTAGACATATA 58.877 38.462 0.00 0.00 0.00 0.86
5190 6484 6.152103 TCGGAAGAAAAATCTCCATGGATGG 61.152 44.000 16.63 4.55 43.30 3.51
5201 6495 2.738743 CCATGGATGGGCTTACTTGTT 58.261 47.619 5.56 0.00 44.31 2.83
5202 6496 3.099141 CCATGGATGGGCTTACTTGTTT 58.901 45.455 5.56 0.00 44.31 2.83
5203 6497 3.131046 CCATGGATGGGCTTACTTGTTTC 59.869 47.826 5.56 0.00 44.31 2.78
5204 6498 3.517296 TGGATGGGCTTACTTGTTTCA 57.483 42.857 0.00 0.00 0.00 2.69
5205 6499 3.420893 TGGATGGGCTTACTTGTTTCAG 58.579 45.455 0.00 0.00 0.00 3.02
5206 6500 3.181434 TGGATGGGCTTACTTGTTTCAGT 60.181 43.478 0.00 0.00 0.00 3.41
5207 6501 3.826729 GGATGGGCTTACTTGTTTCAGTT 59.173 43.478 0.00 0.00 0.00 3.16
5208 6502 4.280929 GGATGGGCTTACTTGTTTCAGTTT 59.719 41.667 0.00 0.00 0.00 2.66
5209 6503 5.221441 GGATGGGCTTACTTGTTTCAGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
5210 6504 6.015772 GGATGGGCTTACTTGTTTCAGTTTTA 60.016 38.462 0.00 0.00 0.00 1.52
5211 6505 6.969993 TGGGCTTACTTGTTTCAGTTTTAT 57.030 33.333 0.00 0.00 0.00 1.40
5212 6506 6.977213 TGGGCTTACTTGTTTCAGTTTTATC 58.023 36.000 0.00 0.00 0.00 1.75
5213 6507 6.084277 GGGCTTACTTGTTTCAGTTTTATCG 58.916 40.000 0.00 0.00 0.00 2.92
5214 6508 6.072893 GGGCTTACTTGTTTCAGTTTTATCGA 60.073 38.462 0.00 0.00 0.00 3.59
5215 6509 7.015877 GGCTTACTTGTTTCAGTTTTATCGAG 58.984 38.462 0.00 0.00 0.00 4.04
5216 6510 7.307811 GGCTTACTTGTTTCAGTTTTATCGAGT 60.308 37.037 0.00 0.00 0.00 4.18
5217 6511 8.068380 GCTTACTTGTTTCAGTTTTATCGAGTT 58.932 33.333 0.00 0.00 0.00 3.01
5218 6512 9.370126 CTTACTTGTTTCAGTTTTATCGAGTTG 57.630 33.333 0.00 0.00 0.00 3.16
5219 6513 7.316544 ACTTGTTTCAGTTTTATCGAGTTGT 57.683 32.000 0.00 0.00 0.00 3.32
5220 6514 8.428186 ACTTGTTTCAGTTTTATCGAGTTGTA 57.572 30.769 0.00 0.00 0.00 2.41
5221 6515 8.885722 ACTTGTTTCAGTTTTATCGAGTTGTAA 58.114 29.630 0.00 0.00 0.00 2.41
5222 6516 9.370126 CTTGTTTCAGTTTTATCGAGTTGTAAG 57.630 33.333 0.00 0.00 0.00 2.34
5223 6517 8.428186 TGTTTCAGTTTTATCGAGTTGTAAGT 57.572 30.769 0.00 0.00 0.00 2.24
5224 6518 9.531942 TGTTTCAGTTTTATCGAGTTGTAAGTA 57.468 29.630 0.00 0.00 0.00 2.24
5272 6566 9.905713 ATTATTAAAGCATTGTTCTAGTGAGGA 57.094 29.630 0.00 0.00 0.00 3.71
5273 6567 9.733556 TTATTAAAGCATTGTTCTAGTGAGGAA 57.266 29.630 0.00 0.00 0.00 3.36
5274 6568 8.635765 ATTAAAGCATTGTTCTAGTGAGGAAA 57.364 30.769 0.00 0.00 0.00 3.13
5275 6569 6.959639 AAAGCATTGTTCTAGTGAGGAAAA 57.040 33.333 0.00 0.00 0.00 2.29
5276 6570 6.566197 AAGCATTGTTCTAGTGAGGAAAAG 57.434 37.500 0.00 0.00 0.00 2.27
5277 6571 5.869579 AGCATTGTTCTAGTGAGGAAAAGA 58.130 37.500 0.00 0.00 0.00 2.52
5278 6572 6.479884 AGCATTGTTCTAGTGAGGAAAAGAT 58.520 36.000 0.00 0.00 0.00 2.40
5279 6573 6.373774 AGCATTGTTCTAGTGAGGAAAAGATG 59.626 38.462 0.00 0.00 0.00 2.90
5280 6574 6.372659 GCATTGTTCTAGTGAGGAAAAGATGA 59.627 38.462 0.00 0.00 0.00 2.92
5281 6575 7.066766 GCATTGTTCTAGTGAGGAAAAGATGAT 59.933 37.037 0.00 0.00 0.00 2.45
5282 6576 7.912056 TTGTTCTAGTGAGGAAAAGATGATG 57.088 36.000 0.00 0.00 0.00 3.07
5283 6577 6.409704 TGTTCTAGTGAGGAAAAGATGATGG 58.590 40.000 0.00 0.00 0.00 3.51
5284 6578 6.213397 TGTTCTAGTGAGGAAAAGATGATGGA 59.787 38.462 0.00 0.00 0.00 3.41
5285 6579 6.477053 TCTAGTGAGGAAAAGATGATGGAG 57.523 41.667 0.00 0.00 0.00 3.86
5286 6580 6.197903 TCTAGTGAGGAAAAGATGATGGAGA 58.802 40.000 0.00 0.00 0.00 3.71
5287 6581 5.096443 AGTGAGGAAAAGATGATGGAGAC 57.904 43.478 0.00 0.00 0.00 3.36
5288 6582 4.080638 AGTGAGGAAAAGATGATGGAGACC 60.081 45.833 0.00 0.00 0.00 3.85
5289 6583 3.845992 TGAGGAAAAGATGATGGAGACCA 59.154 43.478 0.00 0.00 38.19 4.02
5291 6585 4.789807 AGGAAAAGATGATGGAGACCATG 58.210 43.478 8.06 0.00 45.26 3.66
5292 6586 4.476113 AGGAAAAGATGATGGAGACCATGA 59.524 41.667 8.06 0.00 45.26 3.07
5293 6587 5.133999 AGGAAAAGATGATGGAGACCATGAT 59.866 40.000 8.06 5.24 45.26 2.45
5294 6588 5.832060 GGAAAAGATGATGGAGACCATGATT 59.168 40.000 8.06 0.00 45.26 2.57
5295 6589 6.323225 GGAAAAGATGATGGAGACCATGATTT 59.677 38.462 8.06 0.00 45.26 2.17
5296 6590 6.956202 AAAGATGATGGAGACCATGATTTC 57.044 37.500 8.06 0.00 45.26 2.17
5297 6591 4.983053 AGATGATGGAGACCATGATTTCC 58.017 43.478 8.06 0.00 45.26 3.13
5298 6592 3.582998 TGATGGAGACCATGATTTCCC 57.417 47.619 8.06 0.00 45.26 3.97
5299 6593 2.175499 TGATGGAGACCATGATTTCCCC 59.825 50.000 8.06 0.00 45.26 4.81
5300 6594 1.679981 TGGAGACCATGATTTCCCCA 58.320 50.000 0.00 0.00 0.00 4.96
5301 6595 1.284785 TGGAGACCATGATTTCCCCAC 59.715 52.381 0.00 0.00 0.00 4.61
5302 6596 1.284785 GGAGACCATGATTTCCCCACA 59.715 52.381 0.00 0.00 0.00 4.17
5303 6597 2.291540 GGAGACCATGATTTCCCCACAA 60.292 50.000 0.00 0.00 0.00 3.33
5304 6598 3.019564 GAGACCATGATTTCCCCACAAG 58.980 50.000 0.00 0.00 0.00 3.16
5305 6599 2.379907 AGACCATGATTTCCCCACAAGT 59.620 45.455 0.00 0.00 0.00 3.16
5306 6600 2.755103 GACCATGATTTCCCCACAAGTC 59.245 50.000 0.00 0.00 0.00 3.01
5307 6601 1.745087 CCATGATTTCCCCACAAGTCG 59.255 52.381 0.00 0.00 0.00 4.18
5308 6602 1.745087 CATGATTTCCCCACAAGTCGG 59.255 52.381 0.00 0.00 0.00 4.79
5309 6603 0.037590 TGATTTCCCCACAAGTCGGG 59.962 55.000 0.00 0.00 44.07 5.14
5316 6610 3.442996 CCACAAGTCGGGATGAGAC 57.557 57.895 0.00 0.00 38.81 3.36
5321 6615 2.494677 AGTCGGGATGAGACTTCGG 58.505 57.895 0.00 0.00 45.74 4.30
5322 6616 0.034380 AGTCGGGATGAGACTTCGGA 60.034 55.000 0.00 0.00 45.74 4.55
5323 6617 0.100861 GTCGGGATGAGACTTCGGAC 59.899 60.000 0.00 0.00 35.84 4.79
5324 6618 0.323087 TCGGGATGAGACTTCGGACA 60.323 55.000 0.00 0.00 0.00 4.02
5325 6619 0.530744 CGGGATGAGACTTCGGACAA 59.469 55.000 0.00 0.00 0.00 3.18
5326 6620 1.067142 CGGGATGAGACTTCGGACAAA 60.067 52.381 0.00 0.00 0.00 2.83
5327 6621 2.611971 CGGGATGAGACTTCGGACAAAA 60.612 50.000 0.00 0.00 0.00 2.44
5328 6622 3.408634 GGGATGAGACTTCGGACAAAAA 58.591 45.455 0.00 0.00 0.00 1.94
5365 6659 5.932619 AAAAAGGGGCAATGTTACTATCC 57.067 39.130 0.00 0.00 0.00 2.59
5366 6660 4.881157 AAAGGGGCAATGTTACTATCCT 57.119 40.909 0.00 0.00 0.00 3.24
5367 6661 4.881157 AAGGGGCAATGTTACTATCCTT 57.119 40.909 0.00 0.00 0.00 3.36
5368 6662 4.881157 AGGGGCAATGTTACTATCCTTT 57.119 40.909 0.00 0.00 0.00 3.11
5369 6663 5.206905 AGGGGCAATGTTACTATCCTTTT 57.793 39.130 0.00 0.00 0.00 2.27
5370 6664 5.201243 AGGGGCAATGTTACTATCCTTTTC 58.799 41.667 0.00 0.00 0.00 2.29
5371 6665 4.341235 GGGGCAATGTTACTATCCTTTTCC 59.659 45.833 0.00 0.00 0.00 3.13
5372 6666 4.341235 GGGCAATGTTACTATCCTTTTCCC 59.659 45.833 0.00 0.00 0.00 3.97
5373 6667 4.953579 GGCAATGTTACTATCCTTTTCCCA 59.046 41.667 0.00 0.00 0.00 4.37
5374 6668 5.163550 GGCAATGTTACTATCCTTTTCCCAC 60.164 44.000 0.00 0.00 0.00 4.61
5375 6669 5.417580 GCAATGTTACTATCCTTTTCCCACA 59.582 40.000 0.00 0.00 0.00 4.17
5376 6670 6.625081 GCAATGTTACTATCCTTTTCCCACAC 60.625 42.308 0.00 0.00 0.00 3.82
5377 6671 5.836024 TGTTACTATCCTTTTCCCACACT 57.164 39.130 0.00 0.00 0.00 3.55
5378 6672 6.195600 TGTTACTATCCTTTTCCCACACTT 57.804 37.500 0.00 0.00 0.00 3.16
5379 6673 6.001460 TGTTACTATCCTTTTCCCACACTTG 58.999 40.000 0.00 0.00 0.00 3.16
5380 6674 4.034285 ACTATCCTTTTCCCACACTTGG 57.966 45.455 0.00 0.00 43.50 3.61
5381 6675 3.397955 ACTATCCTTTTCCCACACTTGGT 59.602 43.478 0.00 0.00 42.10 3.67
5382 6676 2.358322 TCCTTTTCCCACACTTGGTC 57.642 50.000 0.00 0.00 42.10 4.02
5383 6677 1.133606 TCCTTTTCCCACACTTGGTCC 60.134 52.381 0.00 0.00 42.10 4.46
5384 6678 0.951558 CTTTTCCCACACTTGGTCCG 59.048 55.000 0.00 0.00 42.10 4.79
5385 6679 0.256464 TTTTCCCACACTTGGTCCGT 59.744 50.000 0.00 0.00 42.10 4.69
5386 6680 0.464735 TTTCCCACACTTGGTCCGTG 60.465 55.000 0.00 0.00 42.10 4.94
5388 6682 2.978010 CCACACTTGGTCCGTGGC 60.978 66.667 1.20 0.00 43.43 5.01
5389 6683 2.978010 CACACTTGGTCCGTGGCC 60.978 66.667 0.00 0.00 36.71 5.36
5390 6684 4.265056 ACACTTGGTCCGTGGCCC 62.265 66.667 0.00 0.00 36.71 5.80
5391 6685 4.263572 CACTTGGTCCGTGGCCCA 62.264 66.667 0.00 0.00 0.00 5.36
5392 6686 4.265056 ACTTGGTCCGTGGCCCAC 62.265 66.667 2.98 2.98 0.00 4.61
5393 6687 3.953775 CTTGGTCCGTGGCCCACT 61.954 66.667 12.94 0.00 31.34 4.00
5394 6688 3.491598 CTTGGTCCGTGGCCCACTT 62.492 63.158 12.94 0.00 31.34 3.16
5395 6689 3.485346 TTGGTCCGTGGCCCACTTC 62.485 63.158 12.94 1.92 31.34 3.01
5399 6693 4.077184 CCGTGGCCCACTTCGCTA 62.077 66.667 12.94 0.00 31.34 4.26
5400 6694 2.509336 CGTGGCCCACTTCGCTAG 60.509 66.667 12.94 0.00 31.34 3.42
5401 6695 2.820037 GTGGCCCACTTCGCTAGC 60.820 66.667 6.63 4.06 0.00 3.42
5402 6696 3.318384 TGGCCCACTTCGCTAGCA 61.318 61.111 16.45 0.00 0.00 3.49
5403 6697 2.820037 GGCCCACTTCGCTAGCAC 60.820 66.667 16.45 0.00 0.00 4.40
5404 6698 2.266055 GCCCACTTCGCTAGCACT 59.734 61.111 16.45 0.00 0.00 4.40
5405 6699 1.515954 GCCCACTTCGCTAGCACTA 59.484 57.895 16.45 0.00 0.00 2.74
5406 6700 0.528684 GCCCACTTCGCTAGCACTAG 60.529 60.000 16.45 10.56 36.29 2.57
5407 6701 1.103803 CCCACTTCGCTAGCACTAGA 58.896 55.000 16.45 0.09 35.21 2.43
5408 6702 1.683917 CCCACTTCGCTAGCACTAGAT 59.316 52.381 16.45 0.00 35.21 1.98
5409 6703 2.544694 CCCACTTCGCTAGCACTAGATG 60.545 54.545 16.45 8.40 35.21 2.90
5427 6721 4.504132 CGAGAGCTAAGGGCACAC 57.496 61.111 0.00 0.00 44.79 3.82
5428 6722 1.591703 CGAGAGCTAAGGGCACACA 59.408 57.895 0.00 0.00 44.79 3.72
5429 6723 0.037326 CGAGAGCTAAGGGCACACAA 60.037 55.000 0.00 0.00 44.79 3.33
5430 6724 1.608025 CGAGAGCTAAGGGCACACAAA 60.608 52.381 0.00 0.00 44.79 2.83
5431 6725 2.079925 GAGAGCTAAGGGCACACAAAG 58.920 52.381 0.00 0.00 44.79 2.77
5432 6726 1.421646 AGAGCTAAGGGCACACAAAGT 59.578 47.619 0.00 0.00 44.79 2.66
5447 6741 7.588143 CACACAAAGTGGTTGATAAAAACAA 57.412 32.000 1.93 0.00 44.69 2.83
5448 6742 8.195617 CACACAAAGTGGTTGATAAAAACAAT 57.804 30.769 1.93 0.00 44.69 2.71
5449 6743 8.327429 CACACAAAGTGGTTGATAAAAACAATC 58.673 33.333 1.93 0.00 44.69 2.67
5450 6744 8.257306 ACACAAAGTGGTTGATAAAAACAATCT 58.743 29.630 1.93 0.00 39.87 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.885135 ATGGCCACACTTCTGAATCA 57.115 45.000 8.16 0.00 0.00 2.57
97 105 2.038269 GGGATGAAAACGCGAGGCA 61.038 57.895 15.93 5.56 0.00 4.75
103 111 0.460109 GGCATTGGGGATGAAAACGC 60.460 55.000 0.00 0.00 38.03 4.84
124 132 0.967380 CCCATCTGTGCTTCCCCAAC 60.967 60.000 0.00 0.00 0.00 3.77
125 133 1.139498 TCCCATCTGTGCTTCCCCAA 61.139 55.000 0.00 0.00 0.00 4.12
127 135 1.225704 CTCCCATCTGTGCTTCCCC 59.774 63.158 0.00 0.00 0.00 4.81
131 139 0.108138 GCGTACTCCCATCTGTGCTT 60.108 55.000 0.00 0.00 0.00 3.91
151 159 1.895707 CGGCTTGCATGATCCCTCC 60.896 63.158 3.33 0.00 0.00 4.30
170 178 0.108615 GGGATGGATATGAGCGGACG 60.109 60.000 0.00 0.00 0.00 4.79
173 181 1.219124 CGGGGATGGATATGAGCGG 59.781 63.158 0.00 0.00 0.00 5.52
177 185 0.909610 GGCTCCGGGGATGGATATGA 60.910 60.000 4.80 0.00 37.41 2.15
212 220 4.517285 TGGATCTACTCTGGATTTTGCAC 58.483 43.478 0.00 0.00 0.00 4.57
272 280 3.876300 GCCACGTGCACCTTCTAG 58.124 61.111 10.91 0.00 40.77 2.43
433 447 3.871594 CCGGTAAAACCTAGAGAATGCTG 59.128 47.826 0.00 0.00 35.66 4.41
520 534 2.545106 GTCAATTTTGCAGGCACCAAAG 59.455 45.455 0.00 0.00 34.10 2.77
584 601 8.809066 GGAACCACCTAAAAACCATAACTTAAT 58.191 33.333 0.00 0.00 35.41 1.40
603 620 1.068541 GCGGTTTGATTCTGGAACCAC 60.069 52.381 13.65 4.68 42.27 4.16
690 708 2.605338 CGACTGGTTTGTTGGCTTCATG 60.605 50.000 0.00 0.00 0.00 3.07
691 709 1.608590 CGACTGGTTTGTTGGCTTCAT 59.391 47.619 0.00 0.00 0.00 2.57
730 748 6.128363 CGAGGATTAAACAAAGGTAGTTGTCC 60.128 42.308 0.00 0.00 40.86 4.02
731 749 6.647895 TCGAGGATTAAACAAAGGTAGTTGTC 59.352 38.462 0.00 0.00 40.86 3.18
732 750 6.527423 TCGAGGATTAAACAAAGGTAGTTGT 58.473 36.000 0.00 0.00 43.58 3.32
733 751 7.464358 CATCGAGGATTAAACAAAGGTAGTTG 58.536 38.462 0.00 0.00 34.52 3.16
734 752 6.093633 GCATCGAGGATTAAACAAAGGTAGTT 59.906 38.462 0.00 0.00 0.00 2.24
906 928 2.428890 ACCAGAAGATTGCCTCTCGTAG 59.571 50.000 0.00 0.00 31.03 3.51
928 950 9.543783 GGAAAATACTACTAGTAACTTGGGATG 57.456 37.037 3.76 0.00 33.89 3.51
1305 1332 0.622665 CCTTGTCCTCCAGCCATTCT 59.377 55.000 0.00 0.00 0.00 2.40
1353 1380 4.508128 TCGCGGACATCGAAGCCC 62.508 66.667 6.13 0.00 42.43 5.19
1452 1479 2.577059 GTCCAGATTCGGCCGTGA 59.423 61.111 27.15 15.92 0.00 4.35
1461 1488 1.079127 CTCGTTGGCGGTCCAGATT 60.079 57.895 0.00 0.00 44.53 2.40
1512 1539 1.297689 GCTCACCAGCACCATCTCA 59.702 57.895 0.00 0.00 46.06 3.27
1605 1632 4.622260 ATTGATCCAAACAAAACCCAGG 57.378 40.909 0.00 0.00 0.00 4.45
1840 1876 1.153147 GAAAGCGTCCTCCCATCCC 60.153 63.158 0.00 0.00 0.00 3.85
1904 1942 2.488820 GCTAGCAAGCCAGCAAGC 59.511 61.111 10.63 0.00 43.40 4.01
1911 1949 6.995526 GCAAATCGTTGTAGCTAGCAAGCC 62.996 50.000 18.83 1.68 42.31 4.35
1912 1950 4.026788 GCAAATCGTTGTAGCTAGCAAGC 61.027 47.826 18.83 6.87 41.97 4.01
1913 1951 3.485877 GGCAAATCGTTGTAGCTAGCAAG 60.486 47.826 18.83 0.00 37.06 4.01
1914 1952 2.418628 GGCAAATCGTTGTAGCTAGCAA 59.581 45.455 18.83 0.00 37.06 3.91
1915 1953 2.006888 GGCAAATCGTTGTAGCTAGCA 58.993 47.619 18.83 0.00 37.06 3.49
1916 1954 2.280628 AGGCAAATCGTTGTAGCTAGC 58.719 47.619 6.62 6.62 37.06 3.42
1917 1955 4.154195 ACAAAGGCAAATCGTTGTAGCTAG 59.846 41.667 0.00 0.00 37.52 3.42
1918 1956 4.069304 ACAAAGGCAAATCGTTGTAGCTA 58.931 39.130 0.00 0.00 37.52 3.32
1919 1957 2.884639 ACAAAGGCAAATCGTTGTAGCT 59.115 40.909 0.00 0.00 37.52 3.32
1920 1958 3.282831 ACAAAGGCAAATCGTTGTAGC 57.717 42.857 0.00 0.00 37.52 3.58
1921 1959 6.292114 GGAAAAACAAAGGCAAATCGTTGTAG 60.292 38.462 0.00 0.00 38.12 2.74
1922 1960 5.520649 GGAAAAACAAAGGCAAATCGTTGTA 59.479 36.000 0.00 0.00 38.12 2.41
1923 1961 4.331443 GGAAAAACAAAGGCAAATCGTTGT 59.669 37.500 0.00 0.00 40.11 3.32
1924 1962 4.570369 AGGAAAAACAAAGGCAAATCGTTG 59.430 37.500 0.00 0.00 37.83 4.10
1925 1963 4.765273 AGGAAAAACAAAGGCAAATCGTT 58.235 34.783 0.00 0.00 0.00 3.85
1926 1964 4.099419 AGAGGAAAAACAAAGGCAAATCGT 59.901 37.500 0.00 0.00 0.00 3.73
1927 1965 4.445385 CAGAGGAAAAACAAAGGCAAATCG 59.555 41.667 0.00 0.00 0.00 3.34
1928 1966 5.359756 ACAGAGGAAAAACAAAGGCAAATC 58.640 37.500 0.00 0.00 0.00 2.17
1929 1967 5.357742 ACAGAGGAAAAACAAAGGCAAAT 57.642 34.783 0.00 0.00 0.00 2.32
1930 1968 4.817318 ACAGAGGAAAAACAAAGGCAAA 57.183 36.364 0.00 0.00 0.00 3.68
1931 1969 4.817318 AACAGAGGAAAAACAAAGGCAA 57.183 36.364 0.00 0.00 0.00 4.52
1932 1970 4.817318 AAACAGAGGAAAAACAAAGGCA 57.183 36.364 0.00 0.00 0.00 4.75
1984 3025 9.603921 GAGATTCAAGATTCTGAGAAGATCTTT 57.396 33.333 9.87 0.00 30.03 2.52
2239 3415 6.039941 ACACACCTCCAAATTATTGAAAACGA 59.960 34.615 0.00 0.00 38.94 3.85
2314 3491 8.857098 TGCTAGGAAGATCGTGTAGTTAAATAT 58.143 33.333 0.00 0.00 0.00 1.28
2387 3565 7.918562 GCTTTGTATAAGGAGAGAGTACTTCAG 59.081 40.741 0.00 0.00 0.00 3.02
2714 3913 9.674824 GCATTATCAAAAAGAACTCATGGATAG 57.325 33.333 0.00 0.00 0.00 2.08
2818 4031 1.059584 TGTGGTGTGGTGTCCTGGAT 61.060 55.000 0.00 0.00 0.00 3.41
2895 4109 5.907197 ATTTTTCTAGCATGGACGATACG 57.093 39.130 0.00 0.00 0.00 3.06
2896 4110 6.929606 AGGTATTTTTCTAGCATGGACGATAC 59.070 38.462 0.00 0.00 0.00 2.24
3214 4434 3.986572 TGTGGCAAAAACTCGCAATATTG 59.013 39.130 11.27 11.27 0.00 1.90
3271 4491 5.446073 GGAAGACTTAGAATTCGGAAAAGCG 60.446 44.000 0.00 0.00 0.00 4.68
3620 4853 5.623335 CAAAAACGCGGTTCTCATATACAA 58.377 37.500 11.17 0.00 0.00 2.41
3633 4866 2.173382 CCGAGAGCAAAAACGCGG 59.827 61.111 12.47 0.00 42.03 6.46
3634 4867 2.499732 GCCGAGAGCAAAAACGCG 60.500 61.111 3.53 3.53 42.97 6.01
3732 4973 1.210478 ACACACATAGGCCTCACATCC 59.790 52.381 9.68 0.00 0.00 3.51
3835 5076 6.865834 AAATCTGGGGCATTTTAACACATA 57.134 33.333 0.00 0.00 0.00 2.29
3861 5102 9.834628 GTAAATTTTCAGGACGAAATACATTGA 57.165 29.630 0.00 0.00 43.12 2.57
3862 5103 9.619316 TGTAAATTTTCAGGACGAAATACATTG 57.381 29.630 0.00 0.00 43.12 2.82
3863 5104 9.620660 GTGTAAATTTTCAGGACGAAATACATT 57.379 29.630 0.00 0.00 43.12 2.71
3864 5105 8.788806 TGTGTAAATTTTCAGGACGAAATACAT 58.211 29.630 0.00 0.00 43.12 2.29
3966 5228 7.602265 GGCCTCTAAATGCAAAAGTAAAATTCA 59.398 33.333 0.00 0.00 0.00 2.57
3975 5237 3.091545 TGGAGGCCTCTAAATGCAAAAG 58.908 45.455 31.36 0.00 0.00 2.27
3980 5242 2.645838 TCATGGAGGCCTCTAAATGC 57.354 50.000 31.36 14.67 0.00 3.56
3981 5243 2.883386 GCTTCATGGAGGCCTCTAAATG 59.117 50.000 31.36 27.75 0.00 2.32
3986 5248 0.255318 CAAGCTTCATGGAGGCCTCT 59.745 55.000 31.36 11.02 35.17 3.69
3994 5256 1.259609 TTGAAGGCCAAGCTTCATGG 58.740 50.000 5.01 0.00 39.04 3.66
3999 5261 1.122227 TGCTTTTGAAGGCCAAGCTT 58.878 45.000 21.43 0.00 42.91 3.74
4024 5286 5.580691 TGCTCTTTGAGAACATATACAACCG 59.419 40.000 0.00 0.00 0.00 4.44
4073 5335 7.951591 ACATCCCAAACCACTTATTATTATGC 58.048 34.615 0.00 0.00 0.00 3.14
4487 5752 0.034767 CACATGGCAGATGTGGGAGT 60.035 55.000 16.64 0.00 44.04 3.85
4488 5753 2.789842 CACATGGCAGATGTGGGAG 58.210 57.895 16.64 0.00 44.04 4.30
4520 5785 3.317150 TCGAATGCCATACGCTGATAAG 58.683 45.455 0.00 0.00 38.78 1.73
4555 5820 2.005971 AGACGCGACCCAGTTAAATC 57.994 50.000 15.93 0.00 0.00 2.17
4614 5879 2.187946 GGGGAGCTCCGATGTGTG 59.812 66.667 26.36 0.00 36.71 3.82
4618 5883 3.610669 CGAGGGGGAGCTCCGATG 61.611 72.222 26.36 10.39 36.71 3.84
4621 5886 4.148825 CAACGAGGGGGAGCTCCG 62.149 72.222 26.36 16.47 36.71 4.63
4631 5896 4.261888 CGTGAGGGTTCAACGAGG 57.738 61.111 0.00 0.00 34.49 4.63
4651 5916 0.622136 TCTAGTCCTAGGTGGCGTGA 59.378 55.000 9.08 0.00 34.06 4.35
4653 5918 1.214673 TGATCTAGTCCTAGGTGGCGT 59.785 52.381 9.08 0.00 34.06 5.68
4654 5919 1.609555 GTGATCTAGTCCTAGGTGGCG 59.390 57.143 9.08 0.00 34.06 5.69
4656 5921 3.504134 CGATGTGATCTAGTCCTAGGTGG 59.496 52.174 9.08 0.00 34.06 4.61
4657 5922 4.214545 GTCGATGTGATCTAGTCCTAGGTG 59.785 50.000 9.08 0.00 34.06 4.00
4658 5923 4.141459 TGTCGATGTGATCTAGTCCTAGGT 60.141 45.833 9.08 0.00 34.06 3.08
4660 5925 5.760743 TCTTGTCGATGTGATCTAGTCCTAG 59.239 44.000 0.00 0.00 34.56 3.02
4661 5926 5.681639 TCTTGTCGATGTGATCTAGTCCTA 58.318 41.667 0.00 0.00 0.00 2.94
4662 5927 4.527944 TCTTGTCGATGTGATCTAGTCCT 58.472 43.478 0.00 0.00 0.00 3.85
4663 5928 4.902443 TCTTGTCGATGTGATCTAGTCC 57.098 45.455 0.00 0.00 0.00 3.85
4664 5929 7.644490 ACTATTCTTGTCGATGTGATCTAGTC 58.356 38.462 0.00 0.00 0.00 2.59
4665 5930 7.283354 TGACTATTCTTGTCGATGTGATCTAGT 59.717 37.037 0.00 0.00 37.26 2.57
4666 5931 7.643579 TGACTATTCTTGTCGATGTGATCTAG 58.356 38.462 0.00 0.00 37.26 2.43
4667 5932 7.568199 TGACTATTCTTGTCGATGTGATCTA 57.432 36.000 0.00 0.00 37.26 1.98
4668 5933 6.456795 TGACTATTCTTGTCGATGTGATCT 57.543 37.500 0.00 0.00 37.26 2.75
4669 5934 7.706281 AATGACTATTCTTGTCGATGTGATC 57.294 36.000 0.00 0.00 37.26 2.92
4670 5935 7.765819 TGAAATGACTATTCTTGTCGATGTGAT 59.234 33.333 0.00 0.00 37.26 3.06
4671 5936 7.096551 TGAAATGACTATTCTTGTCGATGTGA 58.903 34.615 0.00 0.00 37.26 3.58
4672 5937 7.276438 TCTGAAATGACTATTCTTGTCGATGTG 59.724 37.037 0.00 0.00 37.26 3.21
4673 5938 7.323420 TCTGAAATGACTATTCTTGTCGATGT 58.677 34.615 0.00 0.00 37.26 3.06
4674 5939 7.761651 TCTGAAATGACTATTCTTGTCGATG 57.238 36.000 0.00 0.00 37.26 3.84
4686 5951 7.180322 AGCTCTTCTTCATCTGAAATGACTA 57.820 36.000 0.00 0.00 33.07 2.59
4688 5953 6.370994 TCAAGCTCTTCTTCATCTGAAATGAC 59.629 38.462 0.00 0.00 33.07 3.06
4690 5955 6.738832 TCAAGCTCTTCTTCATCTGAAATG 57.261 37.500 0.00 0.00 33.07 2.32
4691 5956 6.941436 AGTTCAAGCTCTTCTTCATCTGAAAT 59.059 34.615 0.00 0.00 33.07 2.17
4703 5968 5.447548 GCTTCATGATGAGTTCAAGCTCTTC 60.448 44.000 12.54 3.71 38.03 2.87
4719 5987 5.518848 ACAGTGAAATTTGTGCTTCATGA 57.481 34.783 0.00 0.00 0.00 3.07
4730 5998 3.632145 AGACTTGCGGAACAGTGAAATTT 59.368 39.130 0.00 0.00 0.00 1.82
4738 6006 2.159653 GCAACATAGACTTGCGGAACAG 60.160 50.000 0.00 0.00 35.04 3.16
4739 6007 1.804151 GCAACATAGACTTGCGGAACA 59.196 47.619 0.00 0.00 35.04 3.18
4745 6013 1.466360 CCAAGCGCAACATAGACTTGC 60.466 52.381 11.47 0.00 40.61 4.01
4746 6014 1.466360 GCCAAGCGCAACATAGACTTG 60.466 52.381 11.47 1.16 37.94 3.16
4747 6015 0.804989 GCCAAGCGCAACATAGACTT 59.195 50.000 11.47 0.00 37.47 3.01
4748 6016 0.036010 AGCCAAGCGCAACATAGACT 60.036 50.000 11.47 0.00 41.38 3.24
4750 6018 1.480545 TCTAGCCAAGCGCAACATAGA 59.519 47.619 11.47 7.71 41.38 1.98
4763 6041 7.066887 TGCGATTAATTGAGAAAATTCTAGCCA 59.933 33.333 6.89 0.00 37.73 4.75
4774 6052 8.887036 AGTATATGTGTGCGATTAATTGAGAA 57.113 30.769 6.89 0.00 0.00 2.87
4787 6065 9.645059 ACAACATCTATATGAGTATATGTGTGC 57.355 33.333 0.00 0.00 36.54 4.57
4795 6073 9.147732 TGAGGTTGACAACATCTATATGAGTAT 57.852 33.333 27.56 0.00 42.34 2.12
4813 6091 3.244387 TGACAACAATCGGATGAGGTTGA 60.244 43.478 24.77 10.36 41.90 3.18
4825 6103 0.798009 CGCGGCCAATGACAACAATC 60.798 55.000 2.24 0.00 0.00 2.67
4842 6120 1.090052 GCACAGATCAAGGTACCCGC 61.090 60.000 8.74 0.00 0.00 6.13
4844 6122 0.618458 TGGCACAGATCAAGGTACCC 59.382 55.000 8.74 0.00 0.00 3.69
4861 6139 1.431488 CGGTTCATGACAGCGGATGG 61.431 60.000 16.51 0.00 0.00 3.51
4862 6140 2.009108 CGGTTCATGACAGCGGATG 58.991 57.895 16.51 0.00 0.00 3.51
4871 6149 6.110033 TCGATTTCTTTAATCCGGTTCATGA 58.890 36.000 0.00 0.00 39.63 3.07
4873 6151 6.995511 TTCGATTTCTTTAATCCGGTTCAT 57.004 33.333 0.00 0.00 39.63 2.57
4884 6162 9.858247 GCGTGTAATGAATATTCGATTTCTTTA 57.142 29.630 10.80 0.00 0.00 1.85
4887 6165 6.481976 TGGCGTGTAATGAATATTCGATTTCT 59.518 34.615 10.80 0.00 0.00 2.52
4898 6176 7.542890 TCACAAATATTTGGCGTGTAATGAAT 58.457 30.769 27.43 3.68 42.34 2.57
4910 6188 9.172820 CGTCATCATGTATTCACAAATATTTGG 57.827 33.333 27.43 17.88 42.34 3.28
4911 6189 9.720667 ACGTCATCATGTATTCACAAATATTTG 57.279 29.630 23.60 23.60 43.62 2.32
4995 6273 9.942850 TGTTTCTTTCCTTTTGATTCTTTCTTT 57.057 25.926 0.00 0.00 0.00 2.52
5157 6451 9.681062 TGGAGATTTTTCTTCCGATTTTACTAT 57.319 29.630 0.00 0.00 0.00 2.12
5159 6453 7.996098 TGGAGATTTTTCTTCCGATTTTACT 57.004 32.000 0.00 0.00 0.00 2.24
5166 6460 4.568072 TCCATGGAGATTTTTCTTCCGA 57.432 40.909 11.44 0.00 0.00 4.55
5190 6484 6.894828 TCGATAAAACTGAAACAAGTAAGCC 58.105 36.000 0.00 0.00 0.00 4.35
5191 6485 7.573627 ACTCGATAAAACTGAAACAAGTAAGC 58.426 34.615 0.00 0.00 0.00 3.09
5198 6492 8.428186 ACTTACAACTCGATAAAACTGAAACA 57.572 30.769 0.00 0.00 0.00 2.83
5246 6540 9.905713 TCCTCACTAGAACAATGCTTTAATAAT 57.094 29.630 0.00 0.00 0.00 1.28
5247 6541 9.733556 TTCCTCACTAGAACAATGCTTTAATAA 57.266 29.630 0.00 0.00 0.00 1.40
5248 6542 9.733556 TTTCCTCACTAGAACAATGCTTTAATA 57.266 29.630 0.00 0.00 0.00 0.98
5249 6543 8.635765 TTTCCTCACTAGAACAATGCTTTAAT 57.364 30.769 0.00 0.00 0.00 1.40
5250 6544 8.458573 TTTTCCTCACTAGAACAATGCTTTAA 57.541 30.769 0.00 0.00 0.00 1.52
5251 6545 7.936847 TCTTTTCCTCACTAGAACAATGCTTTA 59.063 33.333 0.00 0.00 0.00 1.85
5252 6546 6.772716 TCTTTTCCTCACTAGAACAATGCTTT 59.227 34.615 0.00 0.00 0.00 3.51
5253 6547 6.299141 TCTTTTCCTCACTAGAACAATGCTT 58.701 36.000 0.00 0.00 0.00 3.91
5254 6548 5.869579 TCTTTTCCTCACTAGAACAATGCT 58.130 37.500 0.00 0.00 0.00 3.79
5255 6549 6.372659 TCATCTTTTCCTCACTAGAACAATGC 59.627 38.462 0.00 0.00 0.00 3.56
5256 6550 7.912056 TCATCTTTTCCTCACTAGAACAATG 57.088 36.000 0.00 0.00 0.00 2.82
5257 6551 7.555554 CCATCATCTTTTCCTCACTAGAACAAT 59.444 37.037 0.00 0.00 0.00 2.71
5258 6552 6.881065 CCATCATCTTTTCCTCACTAGAACAA 59.119 38.462 0.00 0.00 0.00 2.83
5259 6553 6.213397 TCCATCATCTTTTCCTCACTAGAACA 59.787 38.462 0.00 0.00 0.00 3.18
5260 6554 6.644347 TCCATCATCTTTTCCTCACTAGAAC 58.356 40.000 0.00 0.00 0.00 3.01
5261 6555 6.669591 TCTCCATCATCTTTTCCTCACTAGAA 59.330 38.462 0.00 0.00 0.00 2.10
5262 6556 6.097554 GTCTCCATCATCTTTTCCTCACTAGA 59.902 42.308 0.00 0.00 0.00 2.43
5263 6557 6.279882 GTCTCCATCATCTTTTCCTCACTAG 58.720 44.000 0.00 0.00 0.00 2.57
5264 6558 5.129485 GGTCTCCATCATCTTTTCCTCACTA 59.871 44.000 0.00 0.00 0.00 2.74
5265 6559 4.080638 GGTCTCCATCATCTTTTCCTCACT 60.081 45.833 0.00 0.00 0.00 3.41
5266 6560 4.195416 GGTCTCCATCATCTTTTCCTCAC 58.805 47.826 0.00 0.00 0.00 3.51
5267 6561 3.845992 TGGTCTCCATCATCTTTTCCTCA 59.154 43.478 0.00 0.00 0.00 3.86
5268 6562 4.494091 TGGTCTCCATCATCTTTTCCTC 57.506 45.455 0.00 0.00 0.00 3.71
5269 6563 4.476113 TCATGGTCTCCATCATCTTTTCCT 59.524 41.667 0.00 0.00 43.15 3.36
5270 6564 4.785301 TCATGGTCTCCATCATCTTTTCC 58.215 43.478 0.00 0.00 43.15 3.13
5271 6565 6.956202 AATCATGGTCTCCATCATCTTTTC 57.044 37.500 0.00 0.00 43.15 2.29
5272 6566 6.323225 GGAAATCATGGTCTCCATCATCTTTT 59.677 38.462 0.00 0.00 43.15 2.27
5273 6567 5.832060 GGAAATCATGGTCTCCATCATCTTT 59.168 40.000 0.00 0.00 43.15 2.52
5274 6568 5.383476 GGAAATCATGGTCTCCATCATCTT 58.617 41.667 0.00 0.00 43.15 2.40
5275 6569 4.202545 GGGAAATCATGGTCTCCATCATCT 60.203 45.833 0.00 0.00 43.15 2.90
5276 6570 4.077822 GGGAAATCATGGTCTCCATCATC 58.922 47.826 0.00 0.00 43.15 2.92
5277 6571 3.181425 GGGGAAATCATGGTCTCCATCAT 60.181 47.826 0.00 0.00 43.15 2.45
5278 6572 2.175499 GGGGAAATCATGGTCTCCATCA 59.825 50.000 0.00 0.00 43.15 3.07
5279 6573 2.175499 TGGGGAAATCATGGTCTCCATC 59.825 50.000 0.00 0.00 43.15 3.51
5280 6574 2.091665 GTGGGGAAATCATGGTCTCCAT 60.092 50.000 14.31 0.00 46.11 3.41
5281 6575 1.284785 GTGGGGAAATCATGGTCTCCA 59.715 52.381 0.00 5.14 42.33 3.86
5282 6576 1.284785 TGTGGGGAAATCATGGTCTCC 59.715 52.381 0.00 0.00 34.68 3.71
5283 6577 2.806945 TGTGGGGAAATCATGGTCTC 57.193 50.000 0.00 0.00 0.00 3.36
5284 6578 2.379907 ACTTGTGGGGAAATCATGGTCT 59.620 45.455 0.00 0.00 0.00 3.85
5285 6579 2.755103 GACTTGTGGGGAAATCATGGTC 59.245 50.000 0.00 0.00 0.00 4.02
5286 6580 2.807676 GACTTGTGGGGAAATCATGGT 58.192 47.619 0.00 0.00 0.00 3.55
5287 6581 1.745087 CGACTTGTGGGGAAATCATGG 59.255 52.381 0.00 0.00 0.00 3.66
5288 6582 1.745087 CCGACTTGTGGGGAAATCATG 59.255 52.381 0.00 0.00 0.00 3.07
5289 6583 2.128771 CCGACTTGTGGGGAAATCAT 57.871 50.000 0.00 0.00 0.00 2.45
5290 6584 3.642938 CCGACTTGTGGGGAAATCA 57.357 52.632 0.00 0.00 0.00 2.57
5297 6591 3.997768 AAGTCTCATCCCGACTTGTGGG 61.998 54.545 4.78 0.00 46.70 4.61
5298 6592 0.898320 AGTCTCATCCCGACTTGTGG 59.102 55.000 0.00 0.00 38.52 4.17
5299 6593 2.751166 AAGTCTCATCCCGACTTGTG 57.249 50.000 4.78 0.00 46.70 3.33
5303 6597 0.034380 TCCGAAGTCTCATCCCGACT 60.034 55.000 0.00 0.00 43.20 4.18
5304 6598 0.100861 GTCCGAAGTCTCATCCCGAC 59.899 60.000 0.00 0.00 0.00 4.79
5305 6599 0.323087 TGTCCGAAGTCTCATCCCGA 60.323 55.000 0.00 0.00 0.00 5.14
5306 6600 0.530744 TTGTCCGAAGTCTCATCCCG 59.469 55.000 0.00 0.00 0.00 5.14
5307 6601 2.762535 TTTGTCCGAAGTCTCATCCC 57.237 50.000 0.00 0.00 0.00 3.85
5343 6637 5.589831 AGGATAGTAACATTGCCCCTTTTT 58.410 37.500 0.00 0.00 0.00 1.94
5344 6638 5.206905 AGGATAGTAACATTGCCCCTTTT 57.793 39.130 0.00 0.00 0.00 2.27
5345 6639 4.881157 AGGATAGTAACATTGCCCCTTT 57.119 40.909 0.00 0.00 0.00 3.11
5346 6640 4.881157 AAGGATAGTAACATTGCCCCTT 57.119 40.909 0.00 0.00 0.00 3.95
5347 6641 4.881157 AAAGGATAGTAACATTGCCCCT 57.119 40.909 0.00 0.00 0.00 4.79
5348 6642 4.341235 GGAAAAGGATAGTAACATTGCCCC 59.659 45.833 0.00 0.00 0.00 5.80
5349 6643 4.341235 GGGAAAAGGATAGTAACATTGCCC 59.659 45.833 0.00 0.00 0.00 5.36
5350 6644 4.953579 TGGGAAAAGGATAGTAACATTGCC 59.046 41.667 0.00 0.00 0.00 4.52
5351 6645 5.417580 TGTGGGAAAAGGATAGTAACATTGC 59.582 40.000 0.00 0.00 0.00 3.56
5352 6646 6.659242 AGTGTGGGAAAAGGATAGTAACATTG 59.341 38.462 0.00 0.00 0.00 2.82
5353 6647 6.790319 AGTGTGGGAAAAGGATAGTAACATT 58.210 36.000 0.00 0.00 0.00 2.71
5354 6648 6.388619 AGTGTGGGAAAAGGATAGTAACAT 57.611 37.500 0.00 0.00 0.00 2.71
5355 6649 5.836024 AGTGTGGGAAAAGGATAGTAACA 57.164 39.130 0.00 0.00 0.00 2.41
5356 6650 5.414765 CCAAGTGTGGGAAAAGGATAGTAAC 59.585 44.000 0.00 0.00 41.77 2.50
5357 6651 5.566469 CCAAGTGTGGGAAAAGGATAGTAA 58.434 41.667 0.00 0.00 41.77 2.24
5358 6652 5.174037 CCAAGTGTGGGAAAAGGATAGTA 57.826 43.478 0.00 0.00 41.77 1.82
5359 6653 4.034285 CCAAGTGTGGGAAAAGGATAGT 57.966 45.455 0.00 0.00 41.77 2.12
5372 6666 2.978010 GGCCACGGACCAAGTGTG 60.978 66.667 0.00 0.00 37.88 3.82
5373 6667 4.265056 GGGCCACGGACCAAGTGT 62.265 66.667 4.39 0.00 44.50 3.55
5382 6676 4.077184 TAGCGAAGTGGGCCACGG 62.077 66.667 29.76 22.89 39.64 4.94
5383 6677 2.509336 CTAGCGAAGTGGGCCACG 60.509 66.667 29.76 19.99 39.64 4.94
5384 6678 2.820037 GCTAGCGAAGTGGGCCAC 60.820 66.667 29.32 29.32 34.10 5.01
5385 6679 3.318384 TGCTAGCGAAGTGGGCCA 61.318 61.111 10.77 0.00 0.00 5.36
5386 6680 1.956629 TAGTGCTAGCGAAGTGGGCC 61.957 60.000 10.77 0.00 0.00 5.80
5387 6681 0.528684 CTAGTGCTAGCGAAGTGGGC 60.529 60.000 10.77 0.00 0.00 5.36
5388 6682 1.103803 TCTAGTGCTAGCGAAGTGGG 58.896 55.000 10.77 0.00 33.32 4.61
5389 6683 2.736978 CATCTAGTGCTAGCGAAGTGG 58.263 52.381 10.77 0.00 33.32 4.00
5401 6695 2.030363 CCCTTAGCTCTCGCATCTAGTG 60.030 54.545 0.00 0.00 39.10 2.74
5402 6696 2.235016 CCCTTAGCTCTCGCATCTAGT 58.765 52.381 0.00 0.00 39.10 2.57
5403 6697 1.067915 GCCCTTAGCTCTCGCATCTAG 60.068 57.143 0.00 0.00 39.10 2.43
5404 6698 0.962489 GCCCTTAGCTCTCGCATCTA 59.038 55.000 0.00 0.00 39.10 1.98
5405 6699 1.045350 TGCCCTTAGCTCTCGCATCT 61.045 55.000 0.00 0.00 44.23 2.90
5406 6700 0.878086 GTGCCCTTAGCTCTCGCATC 60.878 60.000 0.00 0.00 44.23 3.91
5407 6701 1.144936 GTGCCCTTAGCTCTCGCAT 59.855 57.895 0.00 0.00 44.23 4.73
5408 6702 2.282783 TGTGCCCTTAGCTCTCGCA 61.283 57.895 0.00 0.00 44.23 5.10
5409 6703 1.811679 GTGTGCCCTTAGCTCTCGC 60.812 63.158 0.00 0.00 44.23 5.03
5410 6704 0.037326 TTGTGTGCCCTTAGCTCTCG 60.037 55.000 0.00 0.00 44.23 4.04
5411 6705 2.079925 CTTTGTGTGCCCTTAGCTCTC 58.920 52.381 0.00 0.00 44.23 3.20
5412 6706 1.421646 ACTTTGTGTGCCCTTAGCTCT 59.578 47.619 0.00 0.00 44.23 4.09
5413 6707 1.537202 CACTTTGTGTGCCCTTAGCTC 59.463 52.381 0.00 0.00 44.23 4.09
5414 6708 1.609208 CACTTTGTGTGCCCTTAGCT 58.391 50.000 0.00 0.00 44.23 3.32
5415 6709 0.598065 CCACTTTGTGTGCCCTTAGC 59.402 55.000 0.00 0.00 44.92 3.09
5416 6710 1.981256 ACCACTTTGTGTGCCCTTAG 58.019 50.000 0.00 0.00 44.92 2.18
5417 6711 2.028130 CAACCACTTTGTGTGCCCTTA 58.972 47.619 0.00 0.00 44.92 2.69
5418 6712 0.823460 CAACCACTTTGTGTGCCCTT 59.177 50.000 0.00 0.00 44.92 3.95
5419 6713 0.033601 TCAACCACTTTGTGTGCCCT 60.034 50.000 0.00 0.00 44.92 5.19
5420 6714 1.039856 ATCAACCACTTTGTGTGCCC 58.960 50.000 0.00 0.00 44.92 5.36
5421 6715 4.314740 TTTATCAACCACTTTGTGTGCC 57.685 40.909 0.00 0.00 44.92 5.01
5422 6716 5.578727 TGTTTTTATCAACCACTTTGTGTGC 59.421 36.000 0.00 0.00 44.92 4.57
5423 6717 7.588143 TTGTTTTTATCAACCACTTTGTGTG 57.412 32.000 0.00 0.00 45.80 3.82
5424 6718 8.257306 AGATTGTTTTTATCAACCACTTTGTGT 58.743 29.630 0.00 0.00 36.49 3.72
5425 6719 8.647143 AGATTGTTTTTATCAACCACTTTGTG 57.353 30.769 0.00 0.00 36.49 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.