Multiple sequence alignment - TraesCS5D01G190100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G190100 chr5D 100.000 3479 0 0 1 3479 292642184 292638706 0.000000e+00 6425.0
1 TraesCS5D01G190100 chr5D 75.000 456 84 22 1037 1480 310496903 310497340 2.130000e-42 183.0
2 TraesCS5D01G190100 chr5D 92.105 38 3 0 2108 2145 464325844 464325881 2.000000e-03 54.7
3 TraesCS5D01G190100 chr5B 93.884 2469 125 13 541 2999 333197040 333194588 0.000000e+00 3699.0
4 TraesCS5D01G190100 chr5B 94.987 379 18 1 1 379 333197416 333197039 8.310000e-166 593.0
5 TraesCS5D01G190100 chr5B 85.567 291 36 6 2992 3279 333194552 333194265 2.030000e-77 300.0
6 TraesCS5D01G190100 chr5B 93.023 172 12 0 371 542 93472094 93472265 5.760000e-63 252.0
7 TraesCS5D01G190100 chr5A 93.340 2087 103 20 549 2603 385383876 385381794 0.000000e+00 3051.0
8 TraesCS5D01G190100 chr5A 89.610 1078 71 17 549 1587 690358473 690357398 0.000000e+00 1332.0
9 TraesCS5D01G190100 chr5A 90.408 834 60 8 2177 2997 690356882 690356056 0.000000e+00 1079.0
10 TraesCS5D01G190100 chr5A 91.949 472 35 2 1722 2191 690357398 690356928 0.000000e+00 658.0
11 TraesCS5D01G190100 chr5A 88.630 387 39 5 3 387 385384552 385384169 1.890000e-127 466.0
12 TraesCS5D01G190100 chr4B 90.721 2026 162 12 991 2999 652915646 652913630 0.000000e+00 2676.0
13 TraesCS5D01G190100 chr4B 87.187 359 44 2 22 379 652916633 652916276 1.160000e-109 407.0
14 TraesCS5D01G190100 chr4B 95.545 202 7 2 541 740 652916277 652916076 4.330000e-84 322.0
15 TraesCS5D01G190100 chr4B 93.714 175 11 0 372 546 488893116 488893290 2.660000e-66 263.0
16 TraesCS5D01G190100 chr4B 86.792 159 11 5 608 756 652916033 652915875 5.970000e-38 169.0
17 TraesCS5D01G190100 chrUn 85.746 898 51 29 867 1726 127007104 127007962 0.000000e+00 878.0
18 TraesCS5D01G190100 chrUn 88.604 351 25 7 541 878 127006613 127006961 2.500000e-111 412.0
19 TraesCS5D01G190100 chrUn 88.816 304 31 3 77 379 127006313 127006614 1.530000e-98 370.0
20 TraesCS5D01G190100 chrUn 90.800 250 19 3 2455 2703 127008138 127008384 7.200000e-87 331.0
21 TraesCS5D01G190100 chrUn 90.769 195 7 1 2021 2215 127007958 127008141 2.070000e-62 250.0
22 TraesCS5D01G190100 chrUn 100.000 38 0 0 2108 2145 37409967 37410004 1.730000e-08 71.3
23 TraesCS5D01G190100 chr1B 94.886 176 6 3 373 547 323683347 323683520 4.420000e-69 272.0
24 TraesCS5D01G190100 chr7B 94.706 170 9 0 376 545 393400864 393400695 7.400000e-67 265.0
25 TraesCS5D01G190100 chr7B 94.186 172 9 1 376 547 595441892 595442062 9.580000e-66 261.0
26 TraesCS5D01G190100 chr7B 89.583 48 5 0 2095 2142 135496833 135496786 1.040000e-05 62.1
27 TraesCS5D01G190100 chr6D 95.758 165 5 1 378 542 441751493 441751655 7.400000e-67 265.0
28 TraesCS5D01G190100 chr3A 93.605 172 9 2 371 542 594011134 594011303 4.460000e-64 255.0
29 TraesCS5D01G190100 chr3A 92.571 175 12 1 377 551 649828474 649828301 2.070000e-62 250.0
30 TraesCS5D01G190100 chr2B 93.064 173 12 0 377 549 560444440 560444268 1.600000e-63 254.0
31 TraesCS5D01G190100 chr3D 93.617 47 3 0 2108 2154 17699368 17699414 1.730000e-08 71.3
32 TraesCS5D01G190100 chr4A 89.796 49 4 1 267 314 87402852 87402804 1.040000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G190100 chr5D 292638706 292642184 3478 True 6425.000000 6425 100.000000 1 3479 1 chr5D.!!$R1 3478
1 TraesCS5D01G190100 chr5B 333194265 333197416 3151 True 1530.666667 3699 91.479333 1 3279 3 chr5B.!!$R1 3278
2 TraesCS5D01G190100 chr5A 385381794 385384552 2758 True 1758.500000 3051 90.985000 3 2603 2 chr5A.!!$R1 2600
3 TraesCS5D01G190100 chr5A 690356056 690358473 2417 True 1023.000000 1332 90.655667 549 2997 3 chr5A.!!$R2 2448
4 TraesCS5D01G190100 chr4B 652913630 652916633 3003 True 893.500000 2676 90.061250 22 2999 4 chr4B.!!$R1 2977
5 TraesCS5D01G190100 chrUn 127006313 127008384 2071 False 448.200000 878 88.947000 77 2703 5 chrUn.!!$F2 2626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 352 0.449388 CTCCATGAAAAGGTGAGCGC 59.551 55.0 0.0 0.0 0.0 5.92 F
1590 2168 0.445436 CGCACATCAAGCTCACCTTC 59.555 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 2298 0.462047 CCAGAACTCCATGTACGGGC 60.462 60.0 0.0 0.0 0.00 6.13 R
3008 3687 0.036483 TGAGCGAGCATACAGGCAAA 60.036 50.0 0.0 0.0 35.83 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.732259 CTGGACGCAATACAGAACCAC 59.268 52.381 0.00 0.00 42.80 4.16
93 95 2.564771 CCCATTGAAGATCTTGCGCTA 58.435 47.619 14.00 0.00 0.00 4.26
122 124 4.320456 CCACCGTGGAGCACTGCT 62.320 66.667 12.68 2.22 40.96 4.24
257 259 4.637771 GGCTTTACCCAGCGACAT 57.362 55.556 0.00 0.00 41.12 3.06
327 329 3.062466 TCGTCTGCCTGGTCCTCG 61.062 66.667 0.00 0.00 0.00 4.63
350 352 0.449388 CTCCATGAAAAGGTGAGCGC 59.551 55.000 0.00 0.00 0.00 5.92
380 425 2.494471 ACTGCTGCCGTACATTACTACA 59.506 45.455 0.00 0.00 0.00 2.74
390 435 3.881937 ACATTACTACACCCTCCGTTC 57.118 47.619 0.00 0.00 0.00 3.95
391 436 2.498885 ACATTACTACACCCTCCGTTCC 59.501 50.000 0.00 0.00 0.00 3.62
394 439 2.610438 ACTACACCCTCCGTTCCTAA 57.390 50.000 0.00 0.00 0.00 2.69
395 440 2.893424 ACTACACCCTCCGTTCCTAAA 58.107 47.619 0.00 0.00 0.00 1.85
398 443 5.214293 ACTACACCCTCCGTTCCTAAATAT 58.786 41.667 0.00 0.00 0.00 1.28
399 444 6.376248 ACTACACCCTCCGTTCCTAAATATA 58.624 40.000 0.00 0.00 0.00 0.86
400 445 5.803237 ACACCCTCCGTTCCTAAATATAG 57.197 43.478 0.00 0.00 0.00 1.31
423 468 7.736447 AGGTCTTTGTAGAGATTTCAACAAG 57.264 36.000 0.00 0.00 33.70 3.16
424 469 7.283329 AGGTCTTTGTAGAGATTTCAACAAGT 58.717 34.615 0.00 0.00 33.70 3.16
425 470 7.227512 AGGTCTTTGTAGAGATTTCAACAAGTG 59.772 37.037 0.00 0.00 33.70 3.16
427 472 8.064814 GTCTTTGTAGAGATTTCAACAAGTGAC 58.935 37.037 0.00 0.00 35.39 3.67
428 473 7.987458 TCTTTGTAGAGATTTCAACAAGTGACT 59.013 33.333 0.00 0.00 35.39 3.41
429 474 9.261180 CTTTGTAGAGATTTCAACAAGTGACTA 57.739 33.333 0.00 0.00 35.39 2.59
430 475 8.589335 TTGTAGAGATTTCAACAAGTGACTAC 57.411 34.615 0.00 0.00 35.39 2.73
431 476 7.722363 TGTAGAGATTTCAACAAGTGACTACA 58.278 34.615 0.00 0.00 37.97 2.74
432 477 8.367911 TGTAGAGATTTCAACAAGTGACTACAT 58.632 33.333 0.00 0.00 36.58 2.29
433 478 9.856488 GTAGAGATTTCAACAAGTGACTACATA 57.144 33.333 0.00 0.00 35.39 2.29
434 479 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
435 480 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
436 481 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
437 482 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
438 483 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
439 484 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
440 485 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
441 486 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
442 487 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
443 488 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
447 492 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
449 494 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
451 496 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
453 498 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
456 501 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
457 502 5.163953 ACGAAGCAAAATGAGTGAATCTACG 60.164 40.000 0.00 0.00 0.00 3.51
458 503 5.163953 CGAAGCAAAATGAGTGAATCTACGT 60.164 40.000 0.00 0.00 0.00 3.57
461 506 6.398918 AGCAAAATGAGTGAATCTACGTACT 58.601 36.000 0.00 0.00 0.00 2.73
496 541 9.642343 TCTATATACATCCATATGTGGTAGTCC 57.358 37.037 8.51 0.00 45.99 3.85
497 542 9.421399 CTATATACATCCATATGTGGTAGTCCA 57.579 37.037 8.51 1.36 45.99 4.02
499 544 5.912149 ACATCCATATGTGGTAGTCCATT 57.088 39.130 8.51 0.00 44.79 3.16
500 545 6.266131 ACATCCATATGTGGTAGTCCATTT 57.734 37.500 8.51 0.00 44.79 2.32
501 546 6.064060 ACATCCATATGTGGTAGTCCATTTG 58.936 40.000 8.51 0.00 44.79 2.32
502 547 5.966853 TCCATATGTGGTAGTCCATTTGA 57.033 39.130 8.51 0.00 46.20 2.69
503 548 6.320434 TCCATATGTGGTAGTCCATTTGAA 57.680 37.500 8.51 0.00 46.20 2.69
504 549 6.726379 TCCATATGTGGTAGTCCATTTGAAA 58.274 36.000 8.51 0.00 46.20 2.69
505 550 7.353525 TCCATATGTGGTAGTCCATTTGAAAT 58.646 34.615 8.51 0.00 46.20 2.17
506 551 7.502226 TCCATATGTGGTAGTCCATTTGAAATC 59.498 37.037 8.51 0.00 46.20 2.17
508 553 8.562892 CATATGTGGTAGTCCATTTGAAATCTC 58.437 37.037 0.00 0.00 46.20 2.75
510 555 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
511 556 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
514 559 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
518 563 9.579932 AGTCCATTTGAAATCTCTAAAAAGACT 57.420 29.630 0.00 0.00 0.00 3.24
536 581 7.625828 AAAGACTTATATTTTGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
537 582 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
538 583 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
539 584 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
547 685 1.675116 GGAACGGAGGGAGTAGTTTGC 60.675 57.143 0.00 0.00 0.00 3.68
573 711 4.042809 TGTTTTGGGTGATCACTGGACTAT 59.957 41.667 24.50 0.00 0.00 2.12
678 826 6.592607 CCAAATCCATTTTCCATGACTTTCTG 59.407 38.462 0.00 0.00 0.00 3.02
805 1147 7.545265 GTGAAATGCAGCCATTCTAAACAAATA 59.455 33.333 8.32 0.00 40.69 1.40
831 1176 5.587443 TGAACAGATCATTGATGCCTTACAG 59.413 40.000 3.32 0.00 31.50 2.74
1006 1564 2.513204 CCTCCACTGCGATGGCTG 60.513 66.667 5.05 5.05 39.85 4.85
1149 1707 1.485066 ACCGTCACCTTCTTCACAACT 59.515 47.619 0.00 0.00 0.00 3.16
1207 1765 4.429212 CCGACGACACGGCCATCA 62.429 66.667 2.24 0.00 46.20 3.07
1587 2165 2.401766 CCCGCACATCAAGCTCACC 61.402 63.158 0.00 0.00 0.00 4.02
1590 2168 0.445436 CGCACATCAAGCTCACCTTC 59.555 55.000 0.00 0.00 0.00 3.46
1719 2299 0.467804 CCTTCCAAGGCCTAGAGAGC 59.532 60.000 5.16 0.00 39.76 4.09
1750 2330 2.731976 GAGTTCTGGAACAAGCACTACG 59.268 50.000 14.67 0.00 43.47 3.51
1755 2335 1.302192 GAACAAGCACTACGGGCCA 60.302 57.895 4.39 0.00 0.00 5.36
1806 2386 2.960688 GCAGCCCCCGTCTTCTTCT 61.961 63.158 0.00 0.00 0.00 2.85
1807 2387 1.679898 CAGCCCCCGTCTTCTTCTT 59.320 57.895 0.00 0.00 0.00 2.52
1808 2388 0.391793 CAGCCCCCGTCTTCTTCTTC 60.392 60.000 0.00 0.00 0.00 2.87
1816 2401 1.404181 CGTCTTCTTCTTCATCGGGCA 60.404 52.381 0.00 0.00 0.00 5.36
1851 2436 0.477204 CATGGATGGAGTGGCTGGAT 59.523 55.000 0.00 0.00 0.00 3.41
1853 2438 1.150081 GGATGGAGTGGCTGGATGG 59.850 63.158 0.00 0.00 0.00 3.51
2083 2668 0.247185 ATTGGGGATTTTGCAGCACG 59.753 50.000 0.00 0.00 0.00 5.34
2356 3008 7.364633 GCAAAGAATGTTGCCGAGTTATCGA 62.365 44.000 0.00 0.00 46.60 3.59
2391 3043 1.569548 TCCGTATTGGAGAGAGGGTCT 59.430 52.381 0.00 0.00 43.74 3.85
2399 3051 2.107366 GGAGAGAGGGTCTTCTTGGAG 58.893 57.143 0.00 0.00 34.71 3.86
2425 3077 0.316841 GGAGGAGATGATCGGTGAGC 59.683 60.000 0.00 0.00 0.00 4.26
2448 3103 2.507547 GCACCCAACATGCATGCG 60.508 61.111 26.53 17.21 42.88 4.73
2479 3134 2.224621 CCAAGCAAGGAGGAGTCTTGAA 60.225 50.000 7.86 0.00 42.94 2.69
2709 3388 4.734398 AAAAAGTGTTGAATGCTGGTCA 57.266 36.364 0.00 0.00 0.00 4.02
2752 3431 3.721021 ACTACCTGGTAGCCTACATGTT 58.279 45.455 29.27 7.75 39.51 2.71
2786 3465 1.873698 TCTTTTCTTCCAACCGGACG 58.126 50.000 9.46 0.00 42.67 4.79
2790 3469 1.117142 TTCTTCCAACCGGACGTCCT 61.117 55.000 30.92 12.01 42.67 3.85
2797 3476 0.830866 AACCGGACGTCCTCTTTCCT 60.831 55.000 30.92 6.69 0.00 3.36
2841 3520 0.820074 TTGTCGTTCAACCGGCCATT 60.820 50.000 0.00 0.00 0.00 3.16
2842 3521 0.035036 TGTCGTTCAACCGGCCATTA 59.965 50.000 0.00 0.00 0.00 1.90
2865 3544 1.668751 ACGCACATTAAATACCAGCGG 59.331 47.619 8.76 0.00 46.96 5.52
2940 3619 0.847373 TGGGGCACTAACAGAAACCA 59.153 50.000 0.00 0.00 0.00 3.67
2999 3678 1.299850 GCAAAAGGGGTGTGTTCGC 60.300 57.895 0.00 0.00 0.00 4.70
3000 3679 2.010582 GCAAAAGGGGTGTGTTCGCA 62.011 55.000 0.00 0.00 0.00 5.10
3013 3736 3.477224 TTCGCACGCCTTGTTTGCC 62.477 57.895 0.00 0.00 32.31 4.52
3058 3781 4.817318 TTTTTGGCTCCTTTTCTGTTGT 57.183 36.364 0.00 0.00 0.00 3.32
3074 3797 2.159448 TGTTGTTGTTGGTCAGCTTTCG 60.159 45.455 0.00 0.00 0.00 3.46
3077 3800 0.662619 TTGTTGGTCAGCTTTCGCAG 59.337 50.000 0.00 0.00 39.10 5.18
3084 3807 2.029918 GGTCAGCTTTCGCAGGAAAAAT 60.030 45.455 0.00 0.00 41.38 1.82
3087 3810 5.402398 GTCAGCTTTCGCAGGAAAAATAAT 58.598 37.500 0.00 0.00 41.38 1.28
3089 3812 7.196331 GTCAGCTTTCGCAGGAAAAATAATAT 58.804 34.615 0.00 0.00 41.38 1.28
3288 4013 8.010540 TGATTTGAAAAACAATTCATGCATTCG 58.989 29.630 0.00 0.00 41.11 3.34
3289 4014 7.474398 TTTGAAAAACAATTCATGCATTCGA 57.526 28.000 0.00 0.00 38.98 3.71
3290 4015 7.474398 TTGAAAAACAATTCATGCATTCGAA 57.526 28.000 0.00 0.00 38.98 3.71
3291 4016 7.474398 TGAAAAACAATTCATGCATTCGAAA 57.526 28.000 0.00 0.00 34.50 3.46
3292 4017 7.913423 TGAAAAACAATTCATGCATTCGAAAA 58.087 26.923 0.00 0.00 34.50 2.29
3293 4018 8.393366 TGAAAAACAATTCATGCATTCGAAAAA 58.607 25.926 0.00 0.00 34.50 1.94
3388 4113 5.788055 AAAAACCCAAACGAAAACATGTC 57.212 34.783 0.00 0.00 0.00 3.06
3389 4114 4.457834 AAACCCAAACGAAAACATGTCA 57.542 36.364 0.00 0.00 0.00 3.58
3390 4115 3.708563 ACCCAAACGAAAACATGTCAG 57.291 42.857 0.00 0.00 0.00 3.51
3391 4116 3.283751 ACCCAAACGAAAACATGTCAGA 58.716 40.909 0.00 0.00 0.00 3.27
3392 4117 3.697045 ACCCAAACGAAAACATGTCAGAA 59.303 39.130 0.00 0.00 0.00 3.02
3393 4118 4.158764 ACCCAAACGAAAACATGTCAGAAA 59.841 37.500 0.00 0.00 0.00 2.52
3394 4119 5.105752 CCCAAACGAAAACATGTCAGAAAA 58.894 37.500 0.00 0.00 0.00 2.29
3395 4120 5.005299 CCCAAACGAAAACATGTCAGAAAAC 59.995 40.000 0.00 0.00 0.00 2.43
3396 4121 5.574830 CCAAACGAAAACATGTCAGAAAACA 59.425 36.000 0.00 0.00 0.00 2.83
3397 4122 6.453659 CCAAACGAAAACATGTCAGAAAACAC 60.454 38.462 0.00 0.00 30.55 3.32
3398 4123 5.303747 ACGAAAACATGTCAGAAAACACA 57.696 34.783 0.00 0.00 30.55 3.72
3399 4124 5.331902 ACGAAAACATGTCAGAAAACACAG 58.668 37.500 0.00 0.00 30.55 3.66
3400 4125 5.123186 ACGAAAACATGTCAGAAAACACAGA 59.877 36.000 0.00 0.00 30.55 3.41
3401 4126 5.678483 CGAAAACATGTCAGAAAACACAGAG 59.322 40.000 0.00 0.00 30.55 3.35
3402 4127 6.456853 CGAAAACATGTCAGAAAACACAGAGA 60.457 38.462 0.00 0.00 30.55 3.10
3403 4128 6.757897 AAACATGTCAGAAAACACAGAGAA 57.242 33.333 0.00 0.00 30.55 2.87
3404 4129 6.757897 AACATGTCAGAAAACACAGAGAAA 57.242 33.333 0.00 0.00 30.55 2.52
3405 4130 6.757897 ACATGTCAGAAAACACAGAGAAAA 57.242 33.333 0.00 0.00 30.55 2.29
3406 4131 7.156876 ACATGTCAGAAAACACAGAGAAAAA 57.843 32.000 0.00 0.00 30.55 1.94
3422 4147 3.951115 AAAAACGGCGGAAAGAACC 57.049 47.368 13.24 0.00 0.00 3.62
3423 4148 1.395635 AAAAACGGCGGAAAGAACCT 58.604 45.000 13.24 0.00 0.00 3.50
3424 4149 2.259266 AAAACGGCGGAAAGAACCTA 57.741 45.000 13.24 0.00 0.00 3.08
3425 4150 1.804601 AAACGGCGGAAAGAACCTAG 58.195 50.000 13.24 0.00 0.00 3.02
3426 4151 0.683412 AACGGCGGAAAGAACCTAGT 59.317 50.000 13.24 0.00 0.00 2.57
3427 4152 0.245813 ACGGCGGAAAGAACCTAGTC 59.754 55.000 13.24 0.00 0.00 2.59
3428 4153 0.801067 CGGCGGAAAGAACCTAGTCG 60.801 60.000 0.00 0.00 0.00 4.18
3429 4154 0.459759 GGCGGAAAGAACCTAGTCGG 60.460 60.000 0.00 0.00 39.35 4.79
3430 4155 0.529378 GCGGAAAGAACCTAGTCGGA 59.471 55.000 0.00 0.00 36.31 4.55
3431 4156 1.067354 GCGGAAAGAACCTAGTCGGAA 60.067 52.381 0.00 0.00 36.31 4.30
3432 4157 2.877335 CGGAAAGAACCTAGTCGGAAG 58.123 52.381 0.00 0.00 36.31 3.46
3433 4158 2.619147 GGAAAGAACCTAGTCGGAAGC 58.381 52.381 0.00 0.00 36.31 3.86
3434 4159 2.234168 GGAAAGAACCTAGTCGGAAGCT 59.766 50.000 0.00 0.00 36.31 3.74
3435 4160 3.306849 GGAAAGAACCTAGTCGGAAGCTT 60.307 47.826 0.00 0.00 36.31 3.74
3436 4161 4.316645 GAAAGAACCTAGTCGGAAGCTTT 58.683 43.478 0.00 0.00 35.39 3.51
3437 4162 4.353383 AAGAACCTAGTCGGAAGCTTTT 57.647 40.909 0.00 0.00 36.31 2.27
3438 4163 3.665190 AGAACCTAGTCGGAAGCTTTTG 58.335 45.455 0.00 0.00 36.31 2.44
3439 4164 3.323979 AGAACCTAGTCGGAAGCTTTTGA 59.676 43.478 0.00 0.00 36.31 2.69
3440 4165 3.764237 ACCTAGTCGGAAGCTTTTGAA 57.236 42.857 0.00 0.00 36.31 2.69
3441 4166 4.081322 ACCTAGTCGGAAGCTTTTGAAA 57.919 40.909 0.00 0.00 36.31 2.69
3442 4167 4.065789 ACCTAGTCGGAAGCTTTTGAAAG 58.934 43.478 0.00 3.42 36.43 2.62
3443 4168 4.065789 CCTAGTCGGAAGCTTTTGAAAGT 58.934 43.478 0.00 0.00 34.93 2.66
3444 4169 4.515567 CCTAGTCGGAAGCTTTTGAAAGTT 59.484 41.667 0.00 0.00 34.93 2.66
3445 4170 4.983671 AGTCGGAAGCTTTTGAAAGTTT 57.016 36.364 0.00 5.43 41.27 2.66
3452 4177 6.735678 GAAGCTTTTGAAAGTTTCCCAAAA 57.264 33.333 17.19 12.53 45.05 2.44
3453 4178 6.494893 AAGCTTTTGAAAGTTTCCCAAAAC 57.505 33.333 13.01 7.64 44.24 2.43
3454 4179 4.941263 AGCTTTTGAAAGTTTCCCAAAACC 59.059 37.500 13.01 6.47 44.87 3.27
3455 4180 4.697828 GCTTTTGAAAGTTTCCCAAAACCA 59.302 37.500 13.01 0.00 44.87 3.67
3456 4181 5.182190 GCTTTTGAAAGTTTCCCAAAACCAA 59.818 36.000 13.01 0.00 44.87 3.67
3457 4182 6.294231 GCTTTTGAAAGTTTCCCAAAACCAAA 60.294 34.615 13.01 2.46 44.87 3.28
3458 4183 6.561737 TTTGAAAGTTTCCCAAAACCAAAC 57.438 33.333 13.01 0.00 44.87 2.93
3459 4184 4.580868 TGAAAGTTTCCCAAAACCAAACC 58.419 39.130 13.01 0.00 44.87 3.27
3460 4185 4.041691 TGAAAGTTTCCCAAAACCAAACCA 59.958 37.500 13.01 0.00 44.87 3.67
3461 4186 3.904800 AGTTTCCCAAAACCAAACCAG 57.095 42.857 0.00 0.00 44.87 4.00
3462 4187 2.503765 AGTTTCCCAAAACCAAACCAGG 59.496 45.455 0.00 0.00 44.87 4.45
3463 4188 2.237643 GTTTCCCAAAACCAAACCAGGT 59.762 45.455 0.00 0.00 45.91 4.00
3464 4189 3.399952 TTCCCAAAACCAAACCAGGTA 57.600 42.857 0.00 0.00 42.25 3.08
3465 4190 2.952116 TCCCAAAACCAAACCAGGTAG 58.048 47.619 0.00 0.00 42.25 3.18
3466 4191 2.514582 TCCCAAAACCAAACCAGGTAGA 59.485 45.455 0.00 0.00 42.25 2.59
3467 4192 2.890945 CCCAAAACCAAACCAGGTAGAG 59.109 50.000 0.00 0.00 42.25 2.43
3468 4193 3.435890 CCCAAAACCAAACCAGGTAGAGA 60.436 47.826 0.00 0.00 42.25 3.10
3469 4194 4.211920 CCAAAACCAAACCAGGTAGAGAA 58.788 43.478 0.00 0.00 42.25 2.87
3470 4195 4.647399 CCAAAACCAAACCAGGTAGAGAAA 59.353 41.667 0.00 0.00 42.25 2.52
3471 4196 5.128008 CCAAAACCAAACCAGGTAGAGAAAA 59.872 40.000 0.00 0.00 42.25 2.29
3472 4197 6.351456 CCAAAACCAAACCAGGTAGAGAAAAA 60.351 38.462 0.00 0.00 42.25 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.415010 CCTGAGGGAGTCGATGCG 59.585 66.667 0.00 0.00 33.58 4.73
93 95 3.118454 CGGTGGCGTTTGCGATCT 61.118 61.111 0.00 0.00 44.10 2.75
122 124 1.686587 TCGAGTTGCAGTCTTCCTTGA 59.313 47.619 0.00 0.00 0.00 3.02
271 273 1.413077 CCCCATCTACTTCCTTCGTCC 59.587 57.143 0.00 0.00 0.00 4.79
280 282 3.043999 GCCACCGCCCCATCTACTT 62.044 63.158 0.00 0.00 0.00 2.24
327 329 2.098770 GCTCACCTTTTCATGGAGATGC 59.901 50.000 0.00 0.00 0.00 3.91
398 443 8.429641 ACTTGTTGAAATCTCTACAAAGACCTA 58.570 33.333 0.00 0.00 43.56 3.08
399 444 7.227512 CACTTGTTGAAATCTCTACAAAGACCT 59.772 37.037 0.00 0.00 43.56 3.85
400 445 7.226720 TCACTTGTTGAAATCTCTACAAAGACC 59.773 37.037 0.00 0.00 43.56 3.85
401 446 8.064814 GTCACTTGTTGAAATCTCTACAAAGAC 58.935 37.037 10.49 10.49 43.56 3.01
402 447 7.987458 AGTCACTTGTTGAAATCTCTACAAAGA 59.013 33.333 0.00 0.00 43.56 2.52
404 449 9.042008 GTAGTCACTTGTTGAAATCTCTACAAA 57.958 33.333 0.00 0.00 43.56 2.83
406 451 7.722363 TGTAGTCACTTGTTGAAATCTCTACA 58.278 34.615 0.00 0.00 36.87 2.74
407 452 8.764524 ATGTAGTCACTTGTTGAAATCTCTAC 57.235 34.615 0.00 0.00 35.39 2.59
411 456 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
412 457 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
413 458 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
415 460 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
416 461 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
417 462 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
418 463 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
420 465 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
422 467 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
423 468 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
424 469 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
425 470 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
427 472 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
428 473 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
429 474 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
430 475 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
431 476 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
432 477 6.034577 CGTAGATTCACTCATTTTGCTTCGTA 59.965 38.462 0.00 0.00 0.00 3.43
433 478 5.163953 CGTAGATTCACTCATTTTGCTTCGT 60.164 40.000 0.00 0.00 0.00 3.85
434 479 5.163953 ACGTAGATTCACTCATTTTGCTTCG 60.164 40.000 0.00 0.00 0.00 3.79
435 480 6.170675 ACGTAGATTCACTCATTTTGCTTC 57.829 37.500 0.00 0.00 0.00 3.86
436 481 6.874134 AGTACGTAGATTCACTCATTTTGCTT 59.126 34.615 0.00 0.00 0.00 3.91
437 482 6.398918 AGTACGTAGATTCACTCATTTTGCT 58.601 36.000 0.00 0.00 0.00 3.91
438 483 6.648725 AGTACGTAGATTCACTCATTTTGC 57.351 37.500 0.00 0.00 0.00 3.68
492 537 9.579932 AGTCTTTTTAGAGATTTCAAATGGACT 57.420 29.630 0.00 0.00 0.00 3.85
510 555 8.520351 CCTCCGTTCCAAAATATAAGTCTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
511 556 7.122204 CCCTCCGTTCCAAAATATAAGTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
514 559 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
516 561 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
517 562 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
518 563 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
520 565 4.720273 ACTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
522 567 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
523 568 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
524 569 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
525 570 2.019807 AACTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
527 572 1.675116 GCAAACTACTCCCTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
528 573 1.001633 TGCAAACTACTCCCTCCGTTC 59.998 52.381 0.00 0.00 0.00 3.95
529 574 1.053424 TGCAAACTACTCCCTCCGTT 58.947 50.000 0.00 0.00 0.00 4.44
531 576 0.608640 AGTGCAAACTACTCCCTCCG 59.391 55.000 0.00 0.00 0.00 4.63
532 577 1.348036 ACAGTGCAAACTACTCCCTCC 59.652 52.381 0.00 0.00 0.00 4.30
535 580 3.243401 CCAAAACAGTGCAAACTACTCCC 60.243 47.826 0.00 0.00 0.00 4.30
536 581 3.243401 CCCAAAACAGTGCAAACTACTCC 60.243 47.826 0.00 0.00 0.00 3.85
537 582 3.380320 ACCCAAAACAGTGCAAACTACTC 59.620 43.478 0.00 0.00 0.00 2.59
538 583 3.130340 CACCCAAAACAGTGCAAACTACT 59.870 43.478 0.00 0.00 0.00 2.57
539 584 3.129638 TCACCCAAAACAGTGCAAACTAC 59.870 43.478 0.00 0.00 33.90 2.73
547 685 2.294233 CCAGTGATCACCCAAAACAGTG 59.706 50.000 22.21 10.20 35.24 3.66
573 711 7.282585 AGAGCTGTATTATGGAAATAGTGCAA 58.717 34.615 0.00 0.00 0.00 4.08
678 826 0.864455 GCTATCGCATCAGCTTCCAC 59.136 55.000 0.00 0.00 39.10 4.02
805 1147 4.232188 AGGCATCAATGATCTGTTCACT 57.768 40.909 0.00 0.00 37.11 3.41
831 1176 5.301555 ACCAAAGAAGTGAGAGTAAAGAGC 58.698 41.667 0.00 0.00 0.00 4.09
898 1405 7.254227 AGCAAATGTAAACTTTCGTCAACTA 57.746 32.000 0.00 0.00 0.00 2.24
1006 1564 2.544726 CCGTGGAGGAAGAAGCAAC 58.455 57.895 0.00 0.00 45.00 4.17
1207 1765 4.208686 GGGGAACGCGAGCTCGAT 62.209 66.667 38.74 22.97 43.02 3.59
1587 2165 1.424493 GCGCCATCAAGTCCTCGAAG 61.424 60.000 0.00 0.00 0.00 3.79
1590 2168 2.892425 GGCGCCATCAAGTCCTCG 60.892 66.667 24.80 0.00 0.00 4.63
1718 2298 0.462047 CCAGAACTCCATGTACGGGC 60.462 60.000 0.00 0.00 0.00 6.13
1719 2299 1.191535 TCCAGAACTCCATGTACGGG 58.808 55.000 0.00 0.00 0.00 5.28
1788 2368 2.436824 GAAGAAGACGGGGGCTGC 60.437 66.667 0.00 0.00 0.00 5.25
2083 2668 0.892063 AGAAACCCTCTCACGCTCTC 59.108 55.000 0.00 0.00 0.00 3.20
2325 2977 1.701704 CAACATTCTTTGCCGCTTCC 58.298 50.000 0.00 0.00 0.00 3.46
2356 3008 2.383442 ACGGACTCCATAGCTACCAT 57.617 50.000 0.00 0.00 0.00 3.55
2359 3011 3.825014 TCCAATACGGACTCCATAGCTAC 59.175 47.826 0.00 0.00 39.64 3.58
2391 3043 0.979665 CCTCCACTGCTCTCCAAGAA 59.020 55.000 0.00 0.00 0.00 2.52
2399 3051 1.000385 CGATCATCTCCTCCACTGCTC 60.000 57.143 0.00 0.00 0.00 4.26
2425 3077 1.007038 GCATGTTGGGTGCACACAG 60.007 57.895 23.04 11.91 42.08 3.66
2448 3103 1.888512 TCCTTGCTTGGCTCAACATTC 59.111 47.619 0.00 0.00 0.00 2.67
2666 3343 3.253220 TCAGGCTAGTAGTCCCCAAAAA 58.747 45.455 0.00 0.00 0.00 1.94
2727 3406 5.013808 ACATGTAGGCTACCAGGTAGTTTTT 59.986 40.000 25.08 12.30 38.30 1.94
2729 3408 4.101856 ACATGTAGGCTACCAGGTAGTTT 58.898 43.478 25.08 16.56 38.30 2.66
2730 3409 3.721021 ACATGTAGGCTACCAGGTAGTT 58.279 45.455 25.08 16.87 38.30 2.24
2731 3410 3.399952 ACATGTAGGCTACCAGGTAGT 57.600 47.619 25.08 11.11 38.30 2.73
2752 3431 5.726980 AGAAAAGAAAGCATTATGTGGCA 57.273 34.783 0.00 0.00 0.00 4.92
2786 3465 6.575162 TGAGCAATTAAAAGGAAAGAGGAC 57.425 37.500 0.00 0.00 0.00 3.85
2790 3469 7.033530 TCGTTTGAGCAATTAAAAGGAAAGA 57.966 32.000 0.00 0.00 0.00 2.52
2841 3520 4.269123 CGCTGGTATTTAATGTGCGTCTTA 59.731 41.667 0.00 0.00 37.62 2.10
2842 3521 3.063452 CGCTGGTATTTAATGTGCGTCTT 59.937 43.478 0.00 0.00 37.62 3.01
2865 3544 4.180817 GCTCTTAGACTTGCTTCCTCTTC 58.819 47.826 0.00 0.00 0.00 2.87
2917 3596 2.956333 GTTTCTGTTAGTGCCCCAACTT 59.044 45.455 0.00 0.00 0.00 2.66
2940 3619 6.208988 TGTCAATATCACTTTCTCGTAGCT 57.791 37.500 0.00 0.00 0.00 3.32
3000 3679 0.881118 CATACAGGCAAACAAGGCGT 59.119 50.000 0.00 0.00 39.37 5.68
3002 3681 0.890683 AGCATACAGGCAAACAAGGC 59.109 50.000 0.00 0.00 35.83 4.35
3003 3682 1.131126 CGAGCATACAGGCAAACAAGG 59.869 52.381 0.00 0.00 35.83 3.61
3005 3684 0.521291 GCGAGCATACAGGCAAACAA 59.479 50.000 0.00 0.00 35.83 2.83
3006 3685 0.321564 AGCGAGCATACAGGCAAACA 60.322 50.000 0.00 0.00 35.83 2.83
3007 3686 0.375106 GAGCGAGCATACAGGCAAAC 59.625 55.000 0.00 0.00 35.83 2.93
3008 3687 0.036483 TGAGCGAGCATACAGGCAAA 60.036 50.000 0.00 0.00 35.83 3.68
3013 3736 4.023279 AGAGATTAGTGAGCGAGCATACAG 60.023 45.833 0.00 0.00 0.00 2.74
3042 3765 3.447742 CAACAACAACAGAAAAGGAGCC 58.552 45.455 0.00 0.00 0.00 4.70
3047 3770 3.859386 GCTGACCAACAACAACAGAAAAG 59.141 43.478 0.00 0.00 0.00 2.27
3052 3775 3.438360 GAAAGCTGACCAACAACAACAG 58.562 45.455 0.00 0.00 0.00 3.16
3054 3777 2.450160 CGAAAGCTGACCAACAACAAC 58.550 47.619 0.00 0.00 0.00 3.32
3203 3927 6.366877 GCACAAAATTGCATTAGAACTGTGAT 59.633 34.615 12.23 0.00 42.49 3.06
3262 3987 8.010540 CGAATGCATGAATTGTTTTTCAAATCA 58.989 29.630 2.78 1.73 45.92 2.57
3266 3991 7.474398 TTCGAATGCATGAATTGTTTTTCAA 57.526 28.000 2.78 0.00 38.98 2.69
3366 4091 5.238583 TGACATGTTTTCGTTTGGGTTTTT 58.761 33.333 0.00 0.00 0.00 1.94
3367 4092 4.822026 TGACATGTTTTCGTTTGGGTTTT 58.178 34.783 0.00 0.00 0.00 2.43
3368 4093 4.158764 TCTGACATGTTTTCGTTTGGGTTT 59.841 37.500 0.00 0.00 0.00 3.27
3369 4094 3.697045 TCTGACATGTTTTCGTTTGGGTT 59.303 39.130 0.00 0.00 0.00 4.11
3370 4095 3.283751 TCTGACATGTTTTCGTTTGGGT 58.716 40.909 0.00 0.00 0.00 4.51
3371 4096 3.980646 TCTGACATGTTTTCGTTTGGG 57.019 42.857 0.00 0.00 0.00 4.12
3372 4097 5.574830 TGTTTTCTGACATGTTTTCGTTTGG 59.425 36.000 0.00 0.00 0.00 3.28
3373 4098 6.088749 TGTGTTTTCTGACATGTTTTCGTTTG 59.911 34.615 0.00 0.00 0.00 2.93
3374 4099 6.153067 TGTGTTTTCTGACATGTTTTCGTTT 58.847 32.000 0.00 0.00 0.00 3.60
3375 4100 5.704888 TGTGTTTTCTGACATGTTTTCGTT 58.295 33.333 0.00 0.00 0.00 3.85
3376 4101 5.123186 TCTGTGTTTTCTGACATGTTTTCGT 59.877 36.000 0.00 0.00 0.00 3.85
3377 4102 5.568482 TCTGTGTTTTCTGACATGTTTTCG 58.432 37.500 0.00 0.00 0.00 3.46
3378 4103 6.785191 TCTCTGTGTTTTCTGACATGTTTTC 58.215 36.000 0.00 0.00 0.00 2.29
3379 4104 6.757897 TCTCTGTGTTTTCTGACATGTTTT 57.242 33.333 0.00 0.00 0.00 2.43
3380 4105 6.757897 TTCTCTGTGTTTTCTGACATGTTT 57.242 33.333 0.00 0.00 0.00 2.83
3381 4106 6.757897 TTTCTCTGTGTTTTCTGACATGTT 57.242 33.333 0.00 0.00 0.00 2.71
3382 4107 6.757897 TTTTCTCTGTGTTTTCTGACATGT 57.242 33.333 0.00 0.00 0.00 3.21
3404 4129 1.395635 AGGTTCTTTCCGCCGTTTTT 58.604 45.000 0.00 0.00 0.00 1.94
3405 4130 2.148768 CTAGGTTCTTTCCGCCGTTTT 58.851 47.619 0.00 0.00 0.00 2.43
3406 4131 1.071228 ACTAGGTTCTTTCCGCCGTTT 59.929 47.619 0.00 0.00 0.00 3.60
3407 4132 0.683412 ACTAGGTTCTTTCCGCCGTT 59.317 50.000 0.00 0.00 0.00 4.44
3408 4133 0.245813 GACTAGGTTCTTTCCGCCGT 59.754 55.000 0.00 0.00 0.00 5.68
3409 4134 0.801067 CGACTAGGTTCTTTCCGCCG 60.801 60.000 0.00 0.00 0.00 6.46
3410 4135 0.459759 CCGACTAGGTTCTTTCCGCC 60.460 60.000 0.00 0.00 34.51 6.13
3411 4136 0.529378 TCCGACTAGGTTCTTTCCGC 59.471 55.000 0.00 0.00 41.99 5.54
3412 4137 2.877335 CTTCCGACTAGGTTCTTTCCG 58.123 52.381 0.00 0.00 41.99 4.30
3413 4138 2.234168 AGCTTCCGACTAGGTTCTTTCC 59.766 50.000 0.00 0.00 41.99 3.13
3414 4139 3.596310 AGCTTCCGACTAGGTTCTTTC 57.404 47.619 0.00 0.00 41.99 2.62
3415 4140 4.353383 AAAGCTTCCGACTAGGTTCTTT 57.647 40.909 0.00 0.00 41.99 2.52
3416 4141 4.065789 CAAAAGCTTCCGACTAGGTTCTT 58.934 43.478 0.00 0.00 41.99 2.52
3417 4142 3.323979 TCAAAAGCTTCCGACTAGGTTCT 59.676 43.478 0.00 0.00 41.99 3.01
3418 4143 3.660865 TCAAAAGCTTCCGACTAGGTTC 58.339 45.455 0.00 0.00 41.99 3.62
3419 4144 3.764237 TCAAAAGCTTCCGACTAGGTT 57.236 42.857 0.00 0.00 41.99 3.50
3420 4145 3.764237 TTCAAAAGCTTCCGACTAGGT 57.236 42.857 0.00 0.00 41.99 3.08
3421 4146 4.065789 ACTTTCAAAAGCTTCCGACTAGG 58.934 43.478 0.00 0.00 39.63 3.02
3422 4147 5.674933 AACTTTCAAAAGCTTCCGACTAG 57.325 39.130 0.00 2.63 39.63 2.57
3423 4148 5.008316 GGAAACTTTCAAAAGCTTCCGACTA 59.992 40.000 17.38 0.00 45.73 2.59
3424 4149 4.202020 GGAAACTTTCAAAAGCTTCCGACT 60.202 41.667 17.38 0.00 45.73 4.18
3425 4150 4.042398 GGAAACTTTCAAAAGCTTCCGAC 58.958 43.478 17.38 1.64 45.73 4.79
3426 4151 4.301637 GGAAACTTTCAAAAGCTTCCGA 57.698 40.909 17.38 0.00 45.73 4.55
3429 4154 6.403200 GGTTTTGGGAAACTTTCAAAAGCTTC 60.403 38.462 17.19 9.20 46.45 3.86
3430 4155 5.414454 GGTTTTGGGAAACTTTCAAAAGCTT 59.586 36.000 17.19 0.00 46.45 3.74
3431 4156 4.941263 GGTTTTGGGAAACTTTCAAAAGCT 59.059 37.500 17.19 0.00 46.45 3.74
3432 4157 5.229921 GGTTTTGGGAAACTTTCAAAAGC 57.770 39.130 12.06 12.06 45.14 3.51
3433 4158 6.809630 TTGGTTTTGGGAAACTTTCAAAAG 57.190 33.333 3.93 0.97 43.68 2.27
3434 4159 6.016192 GGTTTGGTTTTGGGAAACTTTCAAAA 60.016 34.615 3.93 0.00 43.68 2.44
3435 4160 5.473846 GGTTTGGTTTTGGGAAACTTTCAAA 59.526 36.000 3.93 2.70 43.68 2.69
3436 4161 5.004448 GGTTTGGTTTTGGGAAACTTTCAA 58.996 37.500 3.93 0.00 43.68 2.69
3437 4162 4.041691 TGGTTTGGTTTTGGGAAACTTTCA 59.958 37.500 3.93 0.00 43.68 2.69
3438 4163 4.580868 TGGTTTGGTTTTGGGAAACTTTC 58.419 39.130 0.00 0.00 43.68 2.62
3439 4164 4.566697 CCTGGTTTGGTTTTGGGAAACTTT 60.567 41.667 0.00 0.00 43.68 2.66
3440 4165 3.054728 CCTGGTTTGGTTTTGGGAAACTT 60.055 43.478 0.00 0.00 43.68 2.66
3441 4166 2.503765 CCTGGTTTGGTTTTGGGAAACT 59.496 45.455 0.00 0.00 43.68 2.66
3442 4167 2.237643 ACCTGGTTTGGTTTTGGGAAAC 59.762 45.455 0.00 0.00 43.50 2.78
3443 4168 2.552367 ACCTGGTTTGGTTTTGGGAAA 58.448 42.857 0.00 0.00 36.89 3.13
3444 4169 2.255770 ACCTGGTTTGGTTTTGGGAA 57.744 45.000 0.00 0.00 36.89 3.97
3445 4170 2.514582 TCTACCTGGTTTGGTTTTGGGA 59.485 45.455 3.84 0.00 41.22 4.37
3446 4171 2.890945 CTCTACCTGGTTTGGTTTTGGG 59.109 50.000 3.84 0.00 41.22 4.12
3447 4172 3.827722 TCTCTACCTGGTTTGGTTTTGG 58.172 45.455 3.84 0.00 41.22 3.28
3448 4173 5.845391 TTTCTCTACCTGGTTTGGTTTTG 57.155 39.130 3.84 0.00 41.22 2.44
3449 4174 6.860790 TTTTTCTCTACCTGGTTTGGTTTT 57.139 33.333 3.84 0.00 41.22 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.