AutoCloner

Multiple sequence alignment - TraesCS5D01G189700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G189700	chr5D	100.000	4051	0	0	1	4051	291888916	291884866	0.000000e+00	7481.0
1	TraesCS5D01G189700	chr5A	92.280	1917	110	19	2167	4051	384215274	384213364	0.000000e+00	2686.0
2	TraesCS5D01G189700	chr5A	91.461	1499	70	19	723	2184	384217194	384215717	0.000000e+00	2006.0
3	TraesCS5D01G189700	chr5A	83.902	733	83	20	5	722	548888783	548889495	0.000000e+00	667.0
4	TraesCS5D01G189700	chr5B	92.492	1798	86	15	2280	4050	332437321	332435546	0.000000e+00	2527.0
5	TraesCS5D01G189700	chr5B	93.988	682	34	4	723	1401	332438949	332438272	0.000000e+00	1026.0
6	TraesCS5D01G189700	chr5B	86.463	458	51	8	1402	1851	332438137	332437683	3.640000e-135	492.0
7	TraesCS5D01G189700	chr1D	87.984	749	56	11	1	727	466485965	466485229	0.000000e+00	854.0
8	TraesCS5D01G189700	chr1D	86.406	743	66	18	1	725	391335589	391334864	0.000000e+00	780.0
9	TraesCS5D01G189700	chr1D	79.000	100	18	3	3396	3492	112749990	112749891	9.400000e-07	65.8
10	TraesCS5D01G189700	chr6D	87.533	754	54	8	1	724	2296652	2295909	0.000000e+00	835.0
11	TraesCS5D01G189700	chr7D	87.567	748	56	13	1	724	555424345	555423611	0.000000e+00	832.0
12	TraesCS5D01G189700	chr7D	87.265	746	61	11	1	722	514742949	514742214	0.000000e+00	821.0
13	TraesCS5D01G189700	chr2D	86.980	745	67	14	1	724	473170776	473170041	0.000000e+00	811.0
14	TraesCS5D01G189700	chr2D	85.559	734	57	16	1	724	632074551	632073857	0.000000e+00	723.0
15	TraesCS5D01G189700	chr6B	85.772	738	77	12	1	724	668894741	668894018	0.000000e+00	756.0
16	TraesCS5D01G189700	chr6B	82.254	417	59	10	322	724	36817129	36816714	3.000000e-91	346.0
17	TraesCS5D01G189700	chr3D	84.987	746	74	16	1	724	59266992	59266263	0.000000e+00	723.0
18	TraesCS5D01G189700	chr6A	83.333	762	79	20	1	727	1693055	1692307	0.000000e+00	660.0
19	TraesCS5D01G189700	chr1A	83.400	753	83	15	3	724	582602186	582602927	0.000000e+00	660.0
20	TraesCS5D01G189700	chr1A	81.987	755	95	23	1	729	83369458	83368719	1.610000e-168	603.0
21	TraesCS5D01G189700	chr7B	87.080	565	44	12	25	572	150496484	150497036	2.680000e-171	612.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G189700	chr5D	291884866	291888916	4050	True	7481.000000	7481	100.0000	1	4051	1	chr5D.!!$R1	4050
1	TraesCS5D01G189700	chr5A	384213364	384217194	3830	True	2346.000000	2686	91.8705	723	4051	2	chr5A.!!$R1	3328
2	TraesCS5D01G189700	chr5A	548888783	548889495	712	False	667.000000	667	83.9020	5	722	1	chr5A.!!$F1	717
3	TraesCS5D01G189700	chr5B	332435546	332438949	3403	True	1348.333333	2527	90.9810	723	4050	3	chr5B.!!$R1	3327
4	TraesCS5D01G189700	chr1D	466485229	466485965	736	True	854.000000	854	87.9840	1	727	1	chr1D.!!$R3	726
5	TraesCS5D01G189700	chr1D	391334864	391335589	725	True	780.000000	780	86.4060	1	725	1	chr1D.!!$R2	724
6	TraesCS5D01G189700	chr6D	2295909	2296652	743	True	835.000000	835	87.5330	1	724	1	chr6D.!!$R1	723
7	TraesCS5D01G189700	chr7D	555423611	555424345	734	True	832.000000	832	87.5670	1	724	1	chr7D.!!$R2	723
8	TraesCS5D01G189700	chr7D	514742214	514742949	735	True	821.000000	821	87.2650	1	722	1	chr7D.!!$R1	721
9	TraesCS5D01G189700	chr2D	473170041	473170776	735	True	811.000000	811	86.9800	1	724	1	chr2D.!!$R1	723
10	TraesCS5D01G189700	chr2D	632073857	632074551	694	True	723.000000	723	85.5590	1	724	1	chr2D.!!$R2	723
11	TraesCS5D01G189700	chr6B	668894018	668894741	723	True	756.000000	756	85.7720	1	724	1	chr6B.!!$R2	723
12	TraesCS5D01G189700	chr3D	59266263	59266992	729	True	723.000000	723	84.9870	1	724	1	chr3D.!!$R1	723
13	TraesCS5D01G189700	chr6A	1692307	1693055	748	True	660.000000	660	83.3330	1	727	1	chr6A.!!$R1	726
14	TraesCS5D01G189700	chr1A	582602186	582602927	741	False	660.000000	660	83.4000	3	724	1	chr1A.!!$F1	721
15	TraesCS5D01G189700	chr1A	83368719	83369458	739	True	603.000000	603	81.9870	1	729	1	chr1A.!!$R1	728
16	TraesCS5D01G189700	chr7B	150496484	150497036	552	False	612.000000	612	87.0800	25	572	1	chr7B.!!$F1	547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
293	322	0.031449	GTGGAGAGCGAGGTCTATGC	59.969	60.0	4.68	0.00	0.00	3.14	F
656	772	0.170561	GCCTCTAAGAACGCGACTGA	59.829	55.0	15.93	3.86	0.00	3.41	F
995	1145	0.317854	GTGCCCGCTCTGTTGTTTTC	60.318	55.0	0.00	0.00	0.00	2.29	F
2858	3655	0.535335	GGACAACCGAGATGCTGGTA	59.465	55.0	0.00	0.00	37.54	3.25	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1162	1314	0.595588	TGTGCGCAACCAATTTCGAT	59.404	45.000	14.0	0.00	3.59	R
1806	2099	1.001974	TCACAAGTCCATTCCACCTCG	59.998	52.381	0.0	0.00	4.63	R
2981	3778	0.392998	TCTGCCGCCATCTTTCCTTC	60.393	55.000	0.0	0.00	3.46	R
3826	4658	1.060244	AGCCTGGAGGGGGATATCTTT	60.060	52.381	0.0	35.18	2.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
179	180	1.191489	TCGTCCTCATGAAGGTGGCA	61.191	55.000	0.00	0.00	46.32	4.92
288	317	4.500116	GCGGTGGAGAGCGAGGTC	62.500	72.222	0.00	0.00	46.19	3.85
289	318	2.752238	CGGTGGAGAGCGAGGTCT	60.752	66.667	4.32	4.32	46.19	3.85
290	319	1.451567	CGGTGGAGAGCGAGGTCTA	60.452	63.158	4.68	0.00	46.19	2.59
291	320	0.820074	CGGTGGAGAGCGAGGTCTAT	60.820	60.000	4.68	0.00	46.19	1.98
292	321	0.671251	GGTGGAGAGCGAGGTCTATG	59.329	60.000	4.68	0.00	0.00	2.23
293	322	0.031449	GTGGAGAGCGAGGTCTATGC	59.969	60.000	4.68	0.00	0.00	3.14
297	326	1.299468	GAGCGAGGTCTATGCGTGG	60.299	63.158	0.00	0.00	0.00	4.94
508	583	1.653920	CGACGAAGCGACGAGAACAC	61.654	60.000	11.93	0.00	46.01	3.32
509	584	0.659417	GACGAAGCGACGAGAACACA	60.659	55.000	11.93	0.00	37.03	3.72
532	607	4.021925	GTCGCTGCCAAGGAGGGT	62.022	66.667	0.00	0.00	38.09	4.34
540	615	4.148825	CAAGGAGGGTCCGCCGAG	62.149	72.222	4.16	0.00	42.75	4.63
617	733	2.760159	CGCCGGCATCAATTTCGGT	61.760	57.895	28.98	0.00	43.87	4.69
623	739	1.369625	GCATCAATTTCGGTCCGAGT	58.630	50.000	14.79	4.72	37.14	4.18
656	772	0.170561	GCCTCTAAGAACGCGACTGA	59.829	55.000	15.93	3.86	0.00	3.41
663	779	1.063649	GAACGCGACTGAGCCGATA	59.936	57.895	15.93	0.00	0.00	2.92
668	784	2.223641	ACGCGACTGAGCCGATATTTTA	60.224	45.455	15.93	0.00	0.00	1.52
890	1012	2.948720	GCCTGCTCGTCCTCCAGTT	61.949	63.158	0.00	0.00	0.00	3.16
920	1042	4.680237	CGCCAGTCGCCACCTCAA	62.680	66.667	0.00	0.00	0.00	3.02
946	1069	2.297044	TCCCCATTCTCCCATTTTCCT	58.703	47.619	0.00	0.00	0.00	3.36
990	1140	0.392998	ATTAGGTGCCCGCTCTGTTG	60.393	55.000	0.00	0.00	0.00	3.33
995	1145	0.317854	GTGCCCGCTCTGTTGTTTTC	60.318	55.000	0.00	0.00	0.00	2.29
1152	1304	5.997746	CAGGTGAAGAGTTCCTTTGTTATCA	59.002	40.000	0.00	0.00	34.68	2.15
1155	1307	7.175641	AGGTGAAGAGTTCCTTTGTTATCAATG	59.824	37.037	0.00	0.00	34.68	2.82
1162	1314	3.855599	TCCTTTGTTATCAATGGAGGGGA	59.144	43.478	14.23	0.00	46.13	4.81
1180	1332	1.259316	GATCGAAATTGGTTGCGCAC	58.741	50.000	11.12	5.37	0.00	5.34
1291	1443	2.426024	CAAATGCCATCAGAGAAGGTGG	59.574	50.000	0.00	0.00	34.84	4.61
1503	1790	8.741101	TCGAAAATTAAATTGGACACAAGATG	57.259	30.769	0.00	0.00	40.49	2.90
1856	2149	4.072131	GGGAACTGTTTGATGCTCTGTTA	58.928	43.478	0.00	0.00	0.00	2.41
1891	2184	4.639135	AAGTGTTGGTCTCTCAAAAAGC	57.361	40.909	0.00	0.00	0.00	3.51
1954	2251	8.668353	AGTCATTGTTGTATATGTCATTGTGTC	58.332	33.333	0.00	0.00	0.00	3.67
1978	2275	5.448225	CGAGCAAAATAGTTCTGTGATGCAT	60.448	40.000	0.00	0.00	35.11	3.96
1985	2282	2.170166	GTTCTGTGATGCATTTCCCCA	58.830	47.619	0.00	0.00	0.00	4.96
1995	2292	4.703379	TGCATTTCCCCAGAAAATTTGT	57.297	36.364	0.00	0.00	44.91	2.83
2008	2305	5.935789	CAGAAAATTTGTGATGCAATTCCCT	59.064	36.000	0.00	0.00	36.89	4.20
2017	2314	5.221884	TGTGATGCAATTCCCTGGAAAATTT	60.222	36.000	2.15	0.00	37.69	1.82
2018	2315	5.122711	GTGATGCAATTCCCTGGAAAATTTG	59.877	40.000	2.15	4.75	37.69	2.32
2019	2316	4.018484	TGCAATTCCCTGGAAAATTTGG	57.982	40.909	2.15	0.00	37.69	3.28
2085	2382	5.191722	AGAGATAATTAACTGGTTGGCCTGA	59.808	40.000	3.32	0.00	37.43	3.86
2099	2404	5.105351	GGTTGGCCTGAAAGTGCTATAAATT	60.105	40.000	3.32	0.00	31.88	1.82
2112	2417	9.686683	AAGTGCTATAAATTTATCCTGAAGTGT	57.313	29.630	13.95	0.00	0.00	3.55
2113	2418	9.113838	AGTGCTATAAATTTATCCTGAAGTGTG	57.886	33.333	13.95	0.00	0.00	3.82
2114	2419	8.893727	GTGCTATAAATTTATCCTGAAGTGTGT	58.106	33.333	13.95	0.00	0.00	3.72
2124	2429	4.840271	TCCTGAAGTGTGTAGTCTATCGA	58.160	43.478	0.00	0.00	0.00	3.59
2296	3089	6.826231	CCAAAAGTTAAACAACCCAAGGAATT	59.174	34.615	0.00	0.00	0.00	2.17
2336	3129	2.612212	GTGTTATCTTACCCATGCACGG	59.388	50.000	0.00	0.00	0.00	4.94
2521	3318	7.586300	CACACTGTAATAACTTGAAACTTTCCG	59.414	37.037	0.00	0.00	0.00	4.30
2705	3502	1.003580	TGCCTTCCTCTTGATCCACAC	59.996	52.381	0.00	0.00	0.00	3.82
2730	3527	6.479990	CACGCTGGAAGAATATGATTCTTGTA	59.520	38.462	17.01	6.80	38.73	2.41
2735	3532	6.767902	TGGAAGAATATGATTCTTGTACTGCC	59.232	38.462	17.01	11.71	38.73	4.85
2780	3577	4.457257	GCCATTACCTTGGATCAGCTTATC	59.543	45.833	0.00	0.00	39.25	1.75
2843	3640	2.838202	GAGAGGGATTACCACAAGGACA	59.162	50.000	0.00	0.00	43.89	4.02
2858	3655	0.535335	GGACAACCGAGATGCTGGTA	59.465	55.000	0.00	0.00	37.54	3.25
2885	3682	2.223735	CCTAATAGCGGAAACTGCTCGA	60.224	50.000	8.38	0.00	39.99	4.04
2920	3717	1.686800	GCAATGGGGATGCCAACCT	60.687	57.895	5.30	0.00	37.85	3.50
2923	3720	4.738998	TGGGGATGCCAACCTGCG	62.739	66.667	5.30	0.00	0.00	5.18
2937	3734	4.023193	CCAACCTGCGTACTGAAGAAAATT	60.023	41.667	0.00	0.00	0.00	1.82
2953	3750	8.306038	TGAAGAAAATTGTGATGTTAATGGAGG	58.694	33.333	0.00	0.00	0.00	4.30
2969	3766	2.231478	TGGAGGCGTTCTAACAGAAGAG	59.769	50.000	0.00	0.00	34.42	2.85
2981	3778	8.651588	GTTCTAACAGAAGAGTGTAATGATGTG	58.348	37.037	0.00	0.00	34.42	3.21
2990	3787	7.009179	AGAGTGTAATGATGTGAAGGAAAGA	57.991	36.000	0.00	0.00	0.00	2.52
2996	3793	1.672881	GATGTGAAGGAAAGATGGCGG	59.327	52.381	0.00	0.00	0.00	6.13
3022	3819	2.550830	AGAAAAGCTGGACGACATGT	57.449	45.000	0.00	0.00	0.00	3.21
3050	3849	6.288941	TCCCTTAGATTGACACGACAATAA	57.711	37.500	0.00	0.00	40.03	1.40
3072	3871	5.646692	AGGGCAGGATAAACTATTAAGCA	57.353	39.130	0.00	0.00	0.00	3.91
3076	3875	6.072452	GGGCAGGATAAACTATTAAGCATGAC	60.072	42.308	0.00	0.00	0.00	3.06
3078	3877	6.347725	GCAGGATAAACTATTAAGCATGACCG	60.348	42.308	0.00	0.00	0.00	4.79
3088	3887	7.817962	ACTATTAAGCATGACCGATGTATAACC	59.182	37.037	0.00	0.00	34.14	2.85
3116	3915	8.846211	AGTTAGTGTATATGTTTGCAGTTTTGT	58.154	29.630	0.00	0.00	0.00	2.83
3155	3954	6.183360	GCATTCCTCGAATTTTGGATTACTGA	60.183	38.462	0.00	0.00	28.87	3.41
3157	3956	6.925610	TCCTCGAATTTTGGATTACTGATG	57.074	37.500	0.00	0.00	0.00	3.07
3168	3967	8.640063	TTTGGATTACTGATGATGATTATGGG	57.360	34.615	0.00	0.00	0.00	4.00
3172	3971	7.884877	GGATTACTGATGATGATTATGGGTGAA	59.115	37.037	0.00	0.00	0.00	3.18
3195	3996	7.547019	TGAACATGTCTGAGATAGATGTTGAAC	59.453	37.037	16.99	7.92	38.25	3.18
3209	4010	7.072177	AGATGTTGAACGGTGTATAATTGTG	57.928	36.000	0.00	0.00	0.00	3.33
3216	4017	6.428465	TGAACGGTGTATAATTGTGTTGATGT	59.572	34.615	0.00	0.00	0.00	3.06
3269	4070	3.950395	AGCTATCATTCCTTTGGTTCAGC	59.050	43.478	0.00	0.00	0.00	4.26
3283	4084	4.081406	TGGTTCAGCTTGATATGCAGTTT	58.919	39.130	0.00	0.00	0.00	2.66
3284	4085	4.082625	TGGTTCAGCTTGATATGCAGTTTG	60.083	41.667	0.00	0.00	0.00	2.93
3285	4086	4.082571	GGTTCAGCTTGATATGCAGTTTGT	60.083	41.667	0.00	0.00	0.00	2.83
3286	4087	5.464168	GTTCAGCTTGATATGCAGTTTGTT	58.536	37.500	0.00	0.00	0.00	2.83
3427	4259	1.066573	ACCGAAGCTGACCAGATGAAG	60.067	52.381	0.47	0.00	0.00	3.02
3452	4284	3.963733	CCAATCTCTGAACCTGGCA	57.036	52.632	0.00	0.00	0.00	4.92
3708	4540	0.478072	ACAGAAGCAATGTGGGGTCA	59.522	50.000	0.00	0.00	0.00	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	1.793134	GAGATCGCCCGTATCCGTGT	61.793	60.000	0.00	0.00	0.00	4.49
138	139	1.118356	CCCGGCTTCTCTATGAGGCT	61.118	60.000	0.00	0.00	45.67	4.58
286	315	2.125673	ACGCACCCACGCATAGAC	60.126	61.111	0.00	0.00	36.19	2.59
287	316	2.125713	CACGCACCCACGCATAGA	60.126	61.111	0.00	0.00	36.19	1.98
288	317	3.195002	CCACGCACCCACGCATAG	61.195	66.667	0.00	0.00	36.19	2.23
509	584	4.749310	CTTGGCAGCGACTCGGCT	62.749	66.667	0.00	0.00	46.13	5.52
540	615	1.121789	GAATCGTTTTTGGCGCGAAAC	59.878	47.619	17.56	17.49	38.17	2.78
607	723	1.803334	CCAACTCGGACCGAAATTGA	58.197	50.000	29.28	6.37	35.45	2.57
641	757	1.134530	CGGCTCAGTCGCGTTCTTAG	61.135	60.000	5.77	8.30	0.00	2.18
646	762	0.102481	AATATCGGCTCAGTCGCGTT	59.898	50.000	5.77	0.00	0.00	4.84
656	772	1.862827	GTCGGCGTTAAAATATCGGCT	59.137	47.619	6.85	0.00	45.37	5.52
689	805	2.036256	CCTCAACAAGGCCCCAGG	59.964	66.667	0.00	0.00	38.67	4.45
920	1042	0.623324	TGGGAGAATGGGGATTCGGT	60.623	55.000	0.00	0.00	35.78	4.69
946	1069	2.690497	CTGGAACAAGATCTAGCCTCGA	59.310	50.000	0.00	0.00	38.70	4.04
990	1140	7.336931	TGATTACTGCTTCCCATTAGAGAAAAC	59.663	37.037	0.00	0.00	0.00	2.43
995	1145	6.586344	TCTTGATTACTGCTTCCCATTAGAG	58.414	40.000	0.00	0.00	0.00	2.43
1107	1258	3.569701	TGATCAAGAAGCAACCAACCTTC	59.430	43.478	0.00	0.00	38.14	3.46
1152	1304	2.244769	ACCAATTTCGATCCCCTCCATT	59.755	45.455	0.00	0.00	0.00	3.16
1155	1307	2.024414	CAACCAATTTCGATCCCCTCC	58.976	52.381	0.00	0.00	0.00	4.30
1162	1314	0.595588	TGTGCGCAACCAATTTCGAT	59.404	45.000	14.00	0.00	0.00	3.59
1180	1332	5.707298	AGATCCAAACAGGTCAGTTTACATG	59.293	40.000	0.00	0.00	39.55	3.21
1291	1443	1.227556	CAGCGGTACATGCTACCCC	60.228	63.158	11.03	8.94	41.72	4.95
1503	1790	9.794685	GATGTTCCAATAAGAAGAAAGATTTCC	57.205	33.333	1.73	0.00	37.92	3.13
1806	2099	1.001974	TCACAAGTCCATTCCACCTCG	59.998	52.381	0.00	0.00	0.00	4.63
1856	2149	6.998673	AGACCAACACTTAAGAGCAACTTTAT	59.001	34.615	10.09	0.00	39.72	1.40
1891	2184	8.671921	TCCGTATAACTAGTAGAACAACAGAAG	58.328	37.037	3.59	0.00	0.00	2.85
1927	2220	9.665719	ACACAATGACATATACAACAATGACTA	57.334	29.630	0.00	0.00	0.00	2.59
1954	2251	4.142838	TGCATCACAGAACTATTTTGCTCG	60.143	41.667	0.00	0.00	0.00	5.03
1978	2275	4.102210	TGCATCACAAATTTTCTGGGGAAA	59.898	37.500	0.00	0.00	39.38	3.13
1985	2282	5.935789	CAGGGAATTGCATCACAAATTTTCT	59.064	36.000	0.00	0.00	42.86	2.52
1995	2292	5.247084	CAAATTTTCCAGGGAATTGCATCA	58.753	37.500	0.83	0.00	33.79	3.07
2099	2404	7.052248	TCGATAGACTACACACTTCAGGATAA	58.948	38.462	0.00	0.00	42.67	1.75
2202	2967	8.454570	TTTCTCTCAATGATTGCAATATAGCA	57.545	30.769	12.97	6.46	43.99	3.49
2250	3022	7.715266	TTGGGAAATCATGAACAATCACATA	57.285	32.000	0.00	0.00	38.69	2.29
2705	3502	5.295292	ACAAGAATCATATTCTTCCAGCGTG	59.705	40.000	11.07	3.65	36.69	5.34
2730	3527	2.604686	TCTTCCTCTGCCGGCAGT	60.605	61.111	45.86	0.00	43.96	4.40
2735	3532	0.539051	ATCCAACTCTTCCTCTGCCG	59.461	55.000	0.00	0.00	0.00	5.69
2780	3577	3.123620	GGCAACAGAGCTGGCTCG	61.124	66.667	15.59	12.96	46.90	5.03
2843	3640	3.270877	GTCATTTACCAGCATCTCGGTT	58.729	45.455	0.00	0.00	36.69	4.44
2858	3655	4.335594	GCAGTTTCCGCTATTAGGTCATTT	59.664	41.667	0.00	0.00	0.00	2.32
2885	3682	4.711949	CTTGCCAGGCCTCGCAGT	62.712	66.667	24.50	0.00	36.14	4.40
2920	3717	5.238432	ACATCACAATTTTCTTCAGTACGCA	59.762	36.000	0.00	0.00	0.00	5.24
2937	3734	2.779755	ACGCCTCCATTAACATCACA	57.220	45.000	0.00	0.00	0.00	3.58
2953	3750	5.862323	TCATTACACTCTTCTGTTAGAACGC	59.138	40.000	0.00	0.00	29.89	4.84
2969	3766	6.678900	GCCATCTTTCCTTCACATCATTACAC	60.679	42.308	0.00	0.00	0.00	2.90
2981	3778	0.392998	TCTGCCGCCATCTTTCCTTC	60.393	55.000	0.00	0.00	0.00	3.46
2990	3787	1.457346	CTTTTCTTCTCTGCCGCCAT	58.543	50.000	0.00	0.00	0.00	4.40
2996	3793	1.462670	CGTCCAGCTTTTCTTCTCTGC	59.537	52.381	0.00	0.00	0.00	4.26
3022	3819	7.526526	ATTGTCGTGTCAATCTAAGGGAACTTA	60.527	37.037	0.00	0.00	41.37	2.24
3050	3849	5.646692	TGCTTAATAGTTTATCCTGCCCT	57.353	39.130	0.00	0.00	0.00	5.19
3072	3871	6.984474	CACTAACTTGGTTATACATCGGTCAT	59.016	38.462	0.00	0.00	0.00	3.06
3088	3887	9.677567	AAAACTGCAAACATATACACTAACTTG	57.322	29.630	0.00	0.00	0.00	3.16
3116	3915	4.009675	GAGGAATGCTACACCATCAACAA	58.990	43.478	0.00	0.00	0.00	2.83
3155	3954	6.489022	CAGACATGTTCACCCATAATCATCAT	59.511	38.462	0.00	0.00	0.00	2.45
3157	3956	6.057533	TCAGACATGTTCACCCATAATCATC	58.942	40.000	0.00	0.00	0.00	2.92
3168	3967	7.038048	TCAACATCTATCTCAGACATGTTCAC	58.962	38.462	0.00	0.00	35.31	3.18
3172	3971	6.038985	CGTTCAACATCTATCTCAGACATGT	58.961	40.000	0.00	0.00	35.62	3.21
3195	3996	6.607689	ACAACATCAACACAATTATACACCG	58.392	36.000	0.00	0.00	0.00	4.94
3240	4041	5.191722	ACCAAAGGAATGATAGCTTCTGGTA	59.808	40.000	0.00	0.00	0.00	3.25
3257	4058	3.444742	TGCATATCAAGCTGAACCAAAGG	59.555	43.478	0.00	0.00	0.00	3.11
3269	4070	6.906659	AGTTCAGAACAAACTGCATATCAAG	58.093	36.000	15.85	0.00	35.68	3.02
3283	4084	2.575532	CTGCCCAGAAAGTTCAGAACA	58.424	47.619	15.85	0.00	0.00	3.18
3284	4085	1.268079	GCTGCCCAGAAAGTTCAGAAC	59.732	52.381	5.00	5.00	0.00	3.01
3285	4086	1.143684	AGCTGCCCAGAAAGTTCAGAA	59.856	47.619	0.00	0.00	0.00	3.02
3286	4087	0.767375	AGCTGCCCAGAAAGTTCAGA	59.233	50.000	0.00	0.00	0.00	3.27
3409	4241	1.005340	GCTTCATCTGGTCAGCTTCG	58.995	55.000	0.00	0.00	0.00	3.79
3427	4259	1.674962	GGTTCAGAGATTGGCATCTGC	59.325	52.381	10.95	0.00	40.14	4.26
3452	4284	4.099419	GGATGAACTCACCCACAAGTTTTT	59.901	41.667	0.00	0.00	35.90	1.94
3739	4571	4.200283	CTGAGGTCGAGGCGAGGC	62.200	72.222	0.00	0.00	36.23	4.70
3741	4573	4.200283	GGCTGAGGTCGAGGCGAG	62.200	72.222	0.00	0.00	36.23	5.03
3826	4658	1.060244	AGCCTGGAGGGGGATATCTTT	60.060	52.381	0.00	0.00	35.18	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.