Multiple sequence alignment - TraesCS5D01G189000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G189000 chr5D 100.000 4547 0 0 1 4547 291508065 291503519 0.000000e+00 8397.0
1 TraesCS5D01G189000 chr5A 95.839 3437 96 19 844 4252 383889595 383886178 0.000000e+00 5511.0
2 TraesCS5D01G189000 chr5A 80.341 646 73 23 18 635 383892692 383892073 1.500000e-119 440.0
3 TraesCS5D01G189000 chr5A 95.294 255 8 4 4289 4541 383886176 383885924 7.090000e-108 401.0
4 TraesCS5D01G189000 chr5A 81.657 169 29 2 405 572 16733141 16732974 6.130000e-29 139.0
5 TraesCS5D01G189000 chr5B 96.754 2095 50 6 2466 4544 332296576 332294484 0.000000e+00 3476.0
6 TraesCS5D01G189000 chr5B 98.453 1551 24 0 932 2482 332299569 332298019 0.000000e+00 2732.0
7 TraesCS5D01G189000 chr5B 82.569 218 31 6 32 244 105698774 105698989 7.770000e-43 185.0
8 TraesCS5D01G189000 chr5B 85.926 135 14 4 32 162 103467605 103467738 6.130000e-29 139.0
9 TraesCS5D01G189000 chr3D 91.398 186 12 4 639 822 79558715 79558532 7.550000e-63 252.0
10 TraesCS5D01G189000 chr3D 95.031 161 6 2 655 813 339257332 339257172 7.550000e-63 252.0
11 TraesCS5D01G189000 chr3D 80.751 213 40 1 360 572 355892708 355892919 1.010000e-36 165.0
12 TraesCS5D01G189000 chr6A 93.452 168 9 2 653 818 287304061 287304228 9.770000e-62 248.0
13 TraesCS5D01G189000 chr6A 91.011 178 12 4 644 819 130354829 130355004 2.110000e-58 237.0
14 TraesCS5D01G189000 chr6A 81.421 183 29 5 393 572 469108942 469109122 1.320000e-30 145.0
15 TraesCS5D01G189000 chr7D 92.941 170 10 2 653 820 69592662 69592831 3.510000e-61 246.0
16 TraesCS5D01G189000 chr7D 93.413 167 9 2 653 817 153983845 153984011 3.510000e-61 246.0
17 TraesCS5D01G189000 chr7D 81.609 87 13 3 31 114 395998593 395998679 8.160000e-08 69.4
18 TraesCS5D01G189000 chr6D 92.899 169 10 2 653 819 392896977 392897145 1.260000e-60 244.0
19 TraesCS5D01G189000 chr6D 80.087 231 39 5 347 576 455754809 455755033 1.010000e-36 165.0
20 TraesCS5D01G189000 chr6D 88.235 51 5 1 32 82 292309184 292309233 4.910000e-05 60.2
21 TraesCS5D01G189000 chr3A 92.442 172 10 3 653 822 611185303 611185133 4.540000e-60 243.0
22 TraesCS5D01G189000 chr3A 78.750 240 45 5 404 639 633846847 633846610 6.090000e-34 156.0
23 TraesCS5D01G189000 chr1D 91.525 177 11 4 653 826 178466468 178466293 1.630000e-59 241.0
24 TraesCS5D01G189000 chr6B 79.654 231 40 4 347 576 693053551 693053775 4.710000e-35 159.0
25 TraesCS5D01G189000 chr6B 100.000 29 0 0 112 140 24436310 24436338 2.000000e-03 54.7
26 TraesCS5D01G189000 chr1A 84.615 156 22 1 415 570 459443272 459443425 2.190000e-33 154.0
27 TraesCS5D01G189000 chr4A 82.635 167 28 1 409 574 108868583 108868417 3.670000e-31 147.0
28 TraesCS5D01G189000 chr4D 79.894 189 36 2 414 601 416822354 416822167 2.210000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G189000 chr5D 291503519 291508065 4546 True 8397.000000 8397 100.000000 1 4547 1 chr5D.!!$R1 4546
1 TraesCS5D01G189000 chr5A 383885924 383892692 6768 True 2117.333333 5511 90.491333 18 4541 3 chr5A.!!$R2 4523
2 TraesCS5D01G189000 chr5B 332294484 332299569 5085 True 3104.000000 3476 97.603500 932 4544 2 chr5B.!!$R1 3612


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 692 0.033306 ACTACTCCCTCCCTCCGTTC 60.033 60.000 0.0 0.0 0.00 3.95 F
1737 4047 0.392998 GGATGTTCGACATGGCACCT 60.393 55.000 0.0 0.0 39.27 4.00 F
2111 4421 1.275856 GCTGTTCATCAAAATGGGGCA 59.724 47.619 0.0 0.0 33.42 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 4680 0.597377 GTGCTTCCTTGCCAAAACCG 60.597 55.000 0.0 0.0 0.00 4.44 R
2814 6594 0.032815 TCGCTGTCACACCGAAATCA 59.967 50.000 0.0 0.0 0.00 2.57 R
4062 7847 1.067821 GTTCATCCTGTAGAGGGCTCG 59.932 57.143 6.0 0.0 40.25 5.03 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.864160 GCATAGCTCAGATGGCTAGGTTC 60.864 52.174 12.94 0.29 44.05 3.62
67 68 2.552743 GCTAGGTTCCTTGTGGTGAAAC 59.447 50.000 0.00 0.00 34.23 2.78
114 116 5.063880 AGTTGACACAGGTGGTCTATTTTC 58.936 41.667 4.24 0.00 36.26 2.29
136 138 4.881850 TCCTGGATTTATTCGAGGCTTTTC 59.118 41.667 0.00 0.00 46.92 2.29
139 141 3.548214 GGATTTATTCGAGGCTTTTCGGC 60.548 47.826 0.00 0.00 40.83 5.54
147 149 1.192534 GAGGCTTTTCGGCGATATTCG 59.807 52.381 11.76 0.00 44.22 3.34
151 153 2.029970 GCTTTTCGGCGATATTCGTTCA 59.970 45.455 11.76 0.00 42.81 3.18
152 154 3.484557 GCTTTTCGGCGATATTCGTTCAA 60.485 43.478 11.76 0.00 42.81 2.69
176 178 2.125269 GGCGTGCCCGTCAACTAT 60.125 61.111 0.00 0.00 38.92 2.12
184 186 3.370061 GTGCCCGTCAACTATAAAGTGTC 59.630 47.826 0.00 0.00 35.62 3.67
187 189 3.617263 CCCGTCAACTATAAAGTGTCTGC 59.383 47.826 0.00 0.00 35.62 4.26
190 192 4.243270 GTCAACTATAAAGTGTCTGCGGT 58.757 43.478 0.00 0.00 35.62 5.68
196 198 6.098017 ACTATAAAGTGTCTGCGGTAACTTC 58.902 40.000 13.56 0.00 33.57 3.01
197 199 1.779569 AAGTGTCTGCGGTAACTTCG 58.220 50.000 9.05 0.00 0.00 3.79
202 204 2.288579 TGTCTGCGGTAACTTCGTCAAT 60.289 45.455 0.00 0.00 0.00 2.57
208 210 4.989797 TGCGGTAACTTCGTCAATCTTAAA 59.010 37.500 0.00 0.00 0.00 1.52
228 230 7.494298 TCTTAAAATTTGTTGGCTCAACCTTTC 59.506 33.333 13.35 0.00 42.96 2.62
229 231 2.861462 TTTGTTGGCTCAACCTTTCG 57.139 45.000 13.35 0.00 42.96 3.46
243 245 2.158900 ACCTTTCGGATGTGCTCATAGG 60.159 50.000 11.31 11.31 34.06 2.57
258 260 3.775316 CTCATAGGGACAGGGTGTAAGTT 59.225 47.826 0.00 0.00 0.00 2.66
264 266 2.294074 GACAGGGTGTAAGTTTGTGCA 58.706 47.619 0.00 0.00 0.00 4.57
268 270 3.569701 CAGGGTGTAAGTTTGTGCATTCT 59.430 43.478 0.00 0.00 0.00 2.40
271 273 6.010219 AGGGTGTAAGTTTGTGCATTCTTAT 58.990 36.000 0.00 0.00 0.00 1.73
278 280 6.199937 AGTTTGTGCATTCTTATGGATGAC 57.800 37.500 1.03 0.00 34.44 3.06
281 283 7.776969 AGTTTGTGCATTCTTATGGATGACTAT 59.223 33.333 1.03 0.00 34.44 2.12
287 289 6.150641 GCATTCTTATGGATGACTATGCATGT 59.849 38.462 10.16 5.42 43.98 3.21
288 290 7.335171 GCATTCTTATGGATGACTATGCATGTA 59.665 37.037 10.16 0.00 43.98 2.29
289 291 8.880750 CATTCTTATGGATGACTATGCATGTAG 58.119 37.037 10.16 1.59 43.98 2.74
290 292 7.544804 TCTTATGGATGACTATGCATGTAGT 57.455 36.000 10.16 5.51 43.98 2.73
291 293 8.650143 TCTTATGGATGACTATGCATGTAGTA 57.350 34.615 10.16 0.00 43.98 1.82
292 294 8.523658 TCTTATGGATGACTATGCATGTAGTAC 58.476 37.037 10.16 1.38 43.98 2.73
294 296 9.528489 TTATGGATGACTATGCATGTAGTACTA 57.472 33.333 10.16 0.00 43.98 1.82
295 297 8.601047 ATGGATGACTATGCATGTAGTACTAT 57.399 34.615 10.16 1.79 42.83 2.12
296 298 7.830739 TGGATGACTATGCATGTAGTACTATG 58.169 38.462 10.16 3.52 35.14 2.23
297 299 7.451566 TGGATGACTATGCATGTAGTACTATGT 59.548 37.037 10.16 0.00 35.14 2.29
298 300 8.307483 GGATGACTATGCATGTAGTACTATGTT 58.693 37.037 10.16 0.00 35.14 2.71
299 301 9.698309 GATGACTATGCATGTAGTACTATGTTT 57.302 33.333 10.16 0.00 35.14 2.83
300 302 9.698309 ATGACTATGCATGTAGTACTATGTTTC 57.302 33.333 10.16 0.00 35.14 2.78
391 414 4.892934 TGGTTAAGTTCTTTGTGCTGGAAT 59.107 37.500 0.00 0.00 0.00 3.01
394 417 4.843220 AAGTTCTTTGTGCTGGAATCAG 57.157 40.909 0.00 0.00 43.64 2.90
410 433 7.615582 TGGAATCAGCTCATTACAGTTTAAG 57.384 36.000 0.00 0.00 0.00 1.85
413 436 8.178313 GGAATCAGCTCATTACAGTTTAAGTTC 58.822 37.037 0.00 0.00 0.00 3.01
416 439 8.988064 TCAGCTCATTACAGTTTAAGTTCTAG 57.012 34.615 0.00 0.00 0.00 2.43
418 441 8.865001 CAGCTCATTACAGTTTAAGTTCTAGAC 58.135 37.037 0.00 0.00 0.00 2.59
432 455 6.333057 AGTTCTAGACTTGGCATTGGTGCT 62.333 45.833 0.00 0.00 42.95 4.40
443 466 2.950433 CATTGGTGCTCGCATTTTTCT 58.050 42.857 0.00 0.00 0.00 2.52
454 477 7.894753 GTGCTCGCATTTTTCTGAATTTATTTC 59.105 33.333 0.00 0.00 34.72 2.17
469 492 9.921637 TGAATTTATTTCAGCCTTTTTAACGAT 57.078 25.926 0.00 0.00 39.44 3.73
471 494 9.705290 AATTTATTTCAGCCTTTTTAACGATGT 57.295 25.926 0.00 0.00 0.00 3.06
472 495 8.736751 TTTATTTCAGCCTTTTTAACGATGTC 57.263 30.769 0.00 0.00 0.00 3.06
473 496 4.759516 TTCAGCCTTTTTAACGATGTCC 57.240 40.909 0.00 0.00 0.00 4.02
474 497 2.739913 TCAGCCTTTTTAACGATGTCCG 59.260 45.455 0.00 0.00 45.44 4.79
506 530 2.693591 GGAGACATCCCGTTGACTATGA 59.306 50.000 0.00 0.00 40.03 2.15
509 533 4.023980 AGACATCCCGTTGACTATGAAGA 58.976 43.478 0.00 0.00 0.00 2.87
510 534 4.113354 GACATCCCGTTGACTATGAAGAC 58.887 47.826 0.00 0.00 0.00 3.01
512 536 2.165167 TCCCGTTGACTATGAAGACGT 58.835 47.619 0.00 0.00 32.26 4.34
515 539 3.172050 CCGTTGACTATGAAGACGTCTG 58.828 50.000 20.85 8.66 32.26 3.51
519 543 4.421033 TGACTATGAAGACGTCTGTGAC 57.579 45.455 20.85 11.55 0.00 3.67
536 560 8.055609 GTCTGTGACGACTTCATTAATATCAG 57.944 38.462 0.00 0.00 36.32 2.90
537 561 7.168302 GTCTGTGACGACTTCATTAATATCAGG 59.832 40.741 0.00 0.00 36.32 3.86
540 564 7.653311 TGTGACGACTTCATTAATATCAGGATG 59.347 37.037 0.00 0.00 36.32 3.51
559 583 1.827344 TGATGTGTCGGCTCAATCTCT 59.173 47.619 0.00 0.00 0.00 3.10
561 585 0.171231 TGTGTCGGCTCAATCTCTCG 59.829 55.000 0.00 0.00 0.00 4.04
562 586 0.452184 GTGTCGGCTCAATCTCTCGA 59.548 55.000 0.00 0.00 0.00 4.04
565 589 1.402259 GTCGGCTCAATCTCTCGAAGA 59.598 52.381 0.00 0.00 38.72 2.87
568 592 2.134346 GGCTCAATCTCTCGAAGATGC 58.866 52.381 9.79 9.09 44.26 3.91
572 596 4.039151 TCAATCTCTCGAAGATGCTCAC 57.961 45.455 9.79 0.00 44.26 3.51
574 598 4.082026 TCAATCTCTCGAAGATGCTCACAA 60.082 41.667 9.79 0.00 44.26 3.33
580 604 4.159321 TCTCGAAGATGCTCACAAGAGAAT 59.841 41.667 0.00 0.00 43.15 2.40
584 608 6.478016 TCGAAGATGCTCACAAGAGAATTATG 59.522 38.462 0.00 0.00 40.40 1.90
585 609 6.257411 CGAAGATGCTCACAAGAGAATTATGT 59.743 38.462 0.00 0.00 40.40 2.29
586 610 6.922247 AGATGCTCACAAGAGAATTATGTG 57.078 37.500 0.00 0.00 40.40 3.21
587 611 4.952262 TGCTCACAAGAGAATTATGTGC 57.048 40.909 0.45 0.00 44.98 4.57
590 614 6.114767 TGCTCACAAGAGAATTATGTGCATA 58.885 36.000 0.00 0.00 44.98 3.14
635 664 6.647895 TGTATATGCTTGTGTATCAGCATCTG 59.352 38.462 9.84 0.00 45.40 2.90
637 666 4.838955 ATGCTTGTGTATCAGCATCTGCG 61.839 47.826 0.71 0.00 43.54 5.18
651 680 4.972201 GCATCTGCGTACTATACTACTCC 58.028 47.826 0.00 0.00 0.00 3.85
652 681 4.142643 GCATCTGCGTACTATACTACTCCC 60.143 50.000 0.00 0.00 0.00 4.30
654 683 4.892433 TCTGCGTACTATACTACTCCCTC 58.108 47.826 0.00 0.00 0.00 4.30
655 684 4.002316 CTGCGTACTATACTACTCCCTCC 58.998 52.174 0.00 0.00 0.00 4.30
656 685 3.244700 TGCGTACTATACTACTCCCTCCC 60.245 52.174 0.00 0.00 0.00 4.30
657 686 3.008923 GCGTACTATACTACTCCCTCCCT 59.991 52.174 0.00 0.00 0.00 4.20
658 687 4.831107 CGTACTATACTACTCCCTCCCTC 58.169 52.174 0.00 0.00 0.00 4.30
659 688 4.323409 CGTACTATACTACTCCCTCCCTCC 60.323 54.167 0.00 0.00 0.00 4.30
661 690 1.532038 ATACTACTCCCTCCCTCCGT 58.468 55.000 0.00 0.00 0.00 4.69
662 691 1.302907 TACTACTCCCTCCCTCCGTT 58.697 55.000 0.00 0.00 0.00 4.44
663 692 0.033306 ACTACTCCCTCCCTCCGTTC 60.033 60.000 0.00 0.00 0.00 3.95
664 693 0.756070 CTACTCCCTCCCTCCGTTCC 60.756 65.000 0.00 0.00 0.00 3.62
665 694 1.219824 TACTCCCTCCCTCCGTTCCT 61.220 60.000 0.00 0.00 0.00 3.36
666 695 1.219824 ACTCCCTCCCTCCGTTCCTA 61.220 60.000 0.00 0.00 0.00 2.94
668 697 0.414629 TCCCTCCCTCCGTTCCTAAA 59.585 55.000 0.00 0.00 0.00 1.85
669 698 1.009183 TCCCTCCCTCCGTTCCTAAAT 59.991 52.381 0.00 0.00 0.00 1.40
671 700 3.116473 TCCCTCCCTCCGTTCCTAAATAT 60.116 47.826 0.00 0.00 0.00 1.28
672 701 3.651423 CCCTCCCTCCGTTCCTAAATATT 59.349 47.826 0.00 0.00 0.00 1.28
673 702 4.104261 CCCTCCCTCCGTTCCTAAATATTT 59.896 45.833 5.89 5.89 0.00 1.40
675 704 5.397559 CCTCCCTCCGTTCCTAAATATTTGT 60.398 44.000 11.05 0.00 0.00 2.83
676 705 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
678 707 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
679 708 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
681 710 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
682 711 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
683 712 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
717 746 9.609346 AATAAGTAACTACATACGGAGCAAAAT 57.391 29.630 0.00 0.00 0.00 1.82
719 748 6.636705 AGTAACTACATACGGAGCAAAATGA 58.363 36.000 0.00 0.00 0.00 2.57
720 749 6.757010 AGTAACTACATACGGAGCAAAATGAG 59.243 38.462 0.00 0.00 0.00 2.90
722 751 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
723 752 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
726 755 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
727 756 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
728 757 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
729 758 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
731 760 4.494855 GGAGCAAAATGAGTGAATCTACGC 60.495 45.833 0.00 0.00 0.00 4.42
732 761 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
734 763 4.331168 GCAAAATGAGTGAATCTACGCTCT 59.669 41.667 0.00 0.00 44.58 4.09
735 764 5.520288 GCAAAATGAGTGAATCTACGCTCTA 59.480 40.000 0.00 0.00 44.58 2.43
737 766 7.413000 GCAAAATGAGTGAATCTACGCTCTAAA 60.413 37.037 0.00 0.00 44.58 1.85
738 767 8.443160 CAAAATGAGTGAATCTACGCTCTAAAA 58.557 33.333 0.00 0.00 44.58 1.52
740 769 9.817809 AAATGAGTGAATCTACGCTCTAAAATA 57.182 29.630 0.00 0.00 44.58 1.40
741 770 9.988815 AATGAGTGAATCTACGCTCTAAAATAT 57.011 29.630 0.00 0.00 44.58 1.28
742 771 8.803201 TGAGTGAATCTACGCTCTAAAATATG 57.197 34.615 0.00 0.00 44.58 1.78
743 772 8.414003 TGAGTGAATCTACGCTCTAAAATATGT 58.586 33.333 0.00 0.00 44.58 2.29
744 773 8.804688 AGTGAATCTACGCTCTAAAATATGTC 57.195 34.615 0.00 0.00 0.00 3.06
745 774 8.634444 AGTGAATCTACGCTCTAAAATATGTCT 58.366 33.333 0.00 0.00 0.00 3.41
746 775 9.894783 GTGAATCTACGCTCTAAAATATGTCTA 57.105 33.333 0.00 0.00 0.00 2.59
763 792 5.868043 TGTCTATATACATCCGTACGTGG 57.132 43.478 15.21 5.54 0.00 4.94
764 793 5.308014 TGTCTATATACATCCGTACGTGGT 58.692 41.667 15.21 11.27 0.00 4.16
766 795 6.934083 TGTCTATATACATCCGTACGTGGTAA 59.066 38.462 15.21 5.39 0.00 2.85
767 796 7.607607 TGTCTATATACATCCGTACGTGGTAAT 59.392 37.037 15.21 10.95 0.00 1.89
768 797 8.119226 GTCTATATACATCCGTACGTGGTAATC 58.881 40.741 15.21 0.37 0.00 1.75
769 798 2.877043 ACATCCGTACGTGGTAATCC 57.123 50.000 15.21 0.00 0.00 3.01
770 799 2.101783 ACATCCGTACGTGGTAATCCA 58.898 47.619 15.21 0.00 42.05 3.41
772 801 3.133362 ACATCCGTACGTGGTAATCCATT 59.867 43.478 15.21 0.00 46.20 3.16
773 802 3.891422 TCCGTACGTGGTAATCCATTT 57.109 42.857 15.21 0.00 46.20 2.32
777 818 4.392445 CCGTACGTGGTAATCCATTTGAAA 59.608 41.667 15.21 0.00 46.20 2.69
781 822 6.834168 ACGTGGTAATCCATTTGAAATCTT 57.166 33.333 0.00 0.00 46.20 2.40
784 825 8.798402 ACGTGGTAATCCATTTGAAATCTTAAA 58.202 29.630 0.00 0.00 46.20 1.52
785 826 9.632807 CGTGGTAATCCATTTGAAATCTTAAAA 57.367 29.630 0.00 0.00 46.20 1.52
827 3016 9.193806 ACGAAGATAGTACTATGTAAAAAGGGA 57.806 33.333 20.13 0.00 0.00 4.20
834 3023 8.879427 AGTACTATGTAAAAAGGGATTTGCTT 57.121 30.769 0.00 0.00 0.00 3.91
835 3024 9.969001 AGTACTATGTAAAAAGGGATTTGCTTA 57.031 29.630 0.00 0.00 0.00 3.09
836 3025 9.999009 GTACTATGTAAAAAGGGATTTGCTTAC 57.001 33.333 0.00 0.00 0.00 2.34
837 3026 8.063200 ACTATGTAAAAAGGGATTTGCTTACC 57.937 34.615 0.00 0.00 0.00 2.85
838 3027 5.731957 TGTAAAAAGGGATTTGCTTACCC 57.268 39.130 0.00 0.00 43.55 3.69
868 3166 5.984695 AAGGGATTTGCTAGAGTTTTTCC 57.015 39.130 0.00 0.00 0.00 3.13
869 3167 4.998051 AGGGATTTGCTAGAGTTTTTCCA 58.002 39.130 0.00 0.00 0.00 3.53
870 3168 5.583932 AGGGATTTGCTAGAGTTTTTCCAT 58.416 37.500 0.00 0.00 0.00 3.41
871 3169 6.019108 AGGGATTTGCTAGAGTTTTTCCATT 58.981 36.000 0.00 0.00 0.00 3.16
872 3170 6.498303 AGGGATTTGCTAGAGTTTTTCCATTT 59.502 34.615 0.00 0.00 0.00 2.32
873 3171 6.813649 GGGATTTGCTAGAGTTTTTCCATTTC 59.186 38.462 0.00 0.00 0.00 2.17
874 3172 6.528072 GGATTTGCTAGAGTTTTTCCATTTCG 59.472 38.462 0.00 0.00 0.00 3.46
875 3173 6.627395 TTTGCTAGAGTTTTTCCATTTCGA 57.373 33.333 0.00 0.00 0.00 3.71
876 3174 5.607119 TGCTAGAGTTTTTCCATTTCGAC 57.393 39.130 0.00 0.00 0.00 4.20
879 3177 6.128282 TGCTAGAGTTTTTCCATTTCGACATC 60.128 38.462 0.00 0.00 0.00 3.06
892 3190 2.298610 TCGACATCGAATCTGCTAGGT 58.701 47.619 0.51 0.00 46.30 3.08
897 3195 3.201290 CATCGAATCTGCTAGGTTTGCT 58.799 45.455 0.00 0.00 0.00 3.91
916 3214 2.232208 GCTGTAAGGAGGCTGCATTTTT 59.768 45.455 9.23 0.00 0.00 1.94
944 3250 5.201713 TGAAAGATATAGAAGGGTCTGCG 57.798 43.478 0.00 0.00 35.12 5.18
1020 3330 2.187946 CTCCCTTCGCGCCATCTT 59.812 61.111 0.00 0.00 0.00 2.40
1254 3564 3.137459 CTCCCTGTCGCGCTCTCT 61.137 66.667 5.56 0.00 0.00 3.10
1377 3687 0.693049 AAATGCCGGTGAAGGACTCT 59.307 50.000 1.90 0.00 0.00 3.24
1434 3744 1.998315 CATGGACTTGTCTCTCTTGCG 59.002 52.381 0.61 0.00 0.00 4.85
1595 3905 2.724520 CCTTGATGGCTGGGTATGC 58.275 57.895 0.00 0.00 0.00 3.14
1737 4047 0.392998 GGATGTTCGACATGGCACCT 60.393 55.000 0.00 0.00 39.27 4.00
2111 4421 1.275856 GCTGTTCATCAAAATGGGGCA 59.724 47.619 0.00 0.00 33.42 5.36
2370 4680 2.782615 GCCGGTTATGCACGTCAC 59.217 61.111 1.90 0.00 0.00 3.67
2813 6593 6.993786 TTCATACTTTTATTCGATGCACCA 57.006 33.333 0.00 0.00 0.00 4.17
2814 6594 7.566760 TTCATACTTTTATTCGATGCACCAT 57.433 32.000 0.00 0.00 0.00 3.55
3528 7308 5.303971 CACTTCAGAGATGGTTCTTGTTCT 58.696 41.667 0.00 0.00 30.30 3.01
3669 7449 0.473694 TGATGACTGGGTGTCTGGGT 60.474 55.000 0.00 0.00 45.54 4.51
3847 7628 6.823182 TGATCAACAGTAATATGTGGACAAGG 59.177 38.462 0.00 0.00 35.96 3.61
4062 7847 7.460751 AACTACGTTCTCACTACTTTGTTTC 57.539 36.000 0.00 0.00 0.00 2.78
4171 7956 3.519107 TCAGTCAGAATAACCATGGCAGA 59.481 43.478 13.04 0.00 0.00 4.26
4195 7980 7.844779 AGAAGAAGGGTATGTTCCATAGTCTTA 59.155 37.037 0.00 0.00 0.00 2.10
4197 7982 6.901300 AGAAGGGTATGTTCCATAGTCTTACA 59.099 38.462 0.00 0.00 0.00 2.41
4199 7984 7.691993 AGGGTATGTTCCATAGTCTTACATT 57.308 36.000 0.00 0.00 32.23 2.71
4254 8039 7.068348 AGCTGCAAGAAATATGATCTGAAATGT 59.932 33.333 1.02 0.00 34.07 2.71
4333 8119 0.180406 AGTTGTGTTCTCAAGGCGGT 59.820 50.000 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.622436 GACTTGAACTCGGAGGATTGG 58.378 52.381 10.23 0.00 0.00 3.16
71 72 2.011122 AAGGACTTGAACTCGGAGGA 57.989 50.000 10.23 0.00 0.00 3.71
74 75 3.893200 TCAACTAAGGACTTGAACTCGGA 59.107 43.478 0.00 0.00 0.00 4.55
76 77 4.444720 GTGTCAACTAAGGACTTGAACTCG 59.555 45.833 0.00 0.00 36.26 4.18
114 116 4.260784 CGAAAAGCCTCGAATAAATCCAGG 60.261 45.833 0.00 0.00 41.44 4.45
130 132 2.029970 TGAACGAATATCGCCGAAAAGC 59.970 45.455 0.00 0.00 45.12 3.51
136 138 0.228742 CCGTTGAACGAATATCGCCG 59.771 55.000 20.47 0.00 46.05 6.46
139 141 3.121126 GCCATACCGTTGAACGAATATCG 60.121 47.826 20.47 10.13 46.05 2.92
147 149 1.133869 GCACGCCATACCGTTGAAC 59.866 57.895 0.00 0.00 39.83 3.18
176 178 3.243501 ACGAAGTTACCGCAGACACTTTA 60.244 43.478 0.00 0.00 37.78 1.85
196 198 6.640499 TGAGCCAACAAATTTTAAGATTGACG 59.360 34.615 0.00 0.00 0.00 4.35
197 199 7.945033 TGAGCCAACAAATTTTAAGATTGAC 57.055 32.000 0.00 0.00 0.00 3.18
202 204 6.478512 AGGTTGAGCCAACAAATTTTAAGA 57.521 33.333 16.55 0.00 45.11 2.10
208 210 3.716601 CGAAAGGTTGAGCCAACAAATT 58.283 40.909 16.55 9.68 45.11 1.82
228 230 0.752658 TGTCCCTATGAGCACATCCG 59.247 55.000 0.00 0.00 37.87 4.18
229 231 1.071385 CCTGTCCCTATGAGCACATCC 59.929 57.143 0.00 0.00 37.87 3.51
243 245 1.607148 GCACAAACTTACACCCTGTCC 59.393 52.381 0.00 0.00 0.00 4.02
258 260 6.016860 GCATAGTCATCCATAAGAATGCACAA 60.017 38.462 0.00 0.00 38.61 3.33
264 266 8.600668 ACTACATGCATAGTCATCCATAAGAAT 58.399 33.333 0.00 0.00 28.86 2.40
268 270 8.422577 AGTACTACATGCATAGTCATCCATAA 57.577 34.615 5.38 0.00 36.74 1.90
271 273 7.451566 ACATAGTACTACATGCATAGTCATCCA 59.548 37.037 4.31 0.00 36.74 3.41
361 384 6.998673 AGCACAAAGAACTTAACCATCTAAGT 59.001 34.615 0.00 0.00 42.63 2.24
391 414 8.803235 TCTAGAACTTAAACTGTAATGAGCTGA 58.197 33.333 0.00 0.00 0.00 4.26
394 417 8.989653 AGTCTAGAACTTAAACTGTAATGAGC 57.010 34.615 0.00 0.00 33.03 4.26
399 422 7.502696 TGCCAAGTCTAGAACTTAAACTGTAA 58.497 34.615 0.00 0.00 46.69 2.41
402 425 7.301054 CAATGCCAAGTCTAGAACTTAAACTG 58.699 38.462 0.00 0.00 46.69 3.16
403 426 6.431234 CCAATGCCAAGTCTAGAACTTAAACT 59.569 38.462 0.00 0.00 46.69 2.66
407 430 5.245531 CACCAATGCCAAGTCTAGAACTTA 58.754 41.667 0.00 0.00 46.69 2.24
410 433 2.162408 GCACCAATGCCAAGTCTAGAAC 59.838 50.000 0.00 0.00 46.97 3.01
443 466 9.921637 ATCGTTAAAAAGGCTGAAATAAATTCA 57.078 25.926 0.00 0.00 45.71 2.57
454 477 3.117434 CGGACATCGTTAAAAAGGCTG 57.883 47.619 0.00 0.00 0.00 4.85
466 489 1.468224 CCTCTCACTGAACGGACATCG 60.468 57.143 0.00 0.00 45.88 3.84
467 490 1.819288 TCCTCTCACTGAACGGACATC 59.181 52.381 0.00 0.00 0.00 3.06
468 491 1.821753 CTCCTCTCACTGAACGGACAT 59.178 52.381 0.00 0.00 0.00 3.06
469 492 1.202891 TCTCCTCTCACTGAACGGACA 60.203 52.381 0.00 0.00 0.00 4.02
470 493 1.200484 GTCTCCTCTCACTGAACGGAC 59.800 57.143 0.00 0.00 0.00 4.79
471 494 1.202891 TGTCTCCTCTCACTGAACGGA 60.203 52.381 0.00 0.00 0.00 4.69
472 495 1.248486 TGTCTCCTCTCACTGAACGG 58.752 55.000 0.00 0.00 0.00 4.44
473 496 2.159310 GGATGTCTCCTCTCACTGAACG 60.159 54.545 0.00 0.00 38.65 3.95
474 497 2.167487 GGGATGTCTCCTCTCACTGAAC 59.833 54.545 0.00 0.00 41.74 3.18
479 502 1.134965 CAACGGGATGTCTCCTCTCAC 60.135 57.143 0.00 0.00 41.74 3.51
482 505 1.187087 GTCAACGGGATGTCTCCTCT 58.813 55.000 0.00 0.00 41.74 3.69
483 506 1.187087 AGTCAACGGGATGTCTCCTC 58.813 55.000 0.00 0.00 41.74 3.71
512 536 7.068226 TCCTGATATTAATGAAGTCGTCACAGA 59.932 37.037 0.00 0.00 39.72 3.41
515 539 7.867909 TCATCCTGATATTAATGAAGTCGTCAC 59.132 37.037 0.00 0.00 39.72 3.67
519 543 8.654215 CACATCATCCTGATATTAATGAAGTCG 58.346 37.037 0.00 0.00 34.28 4.18
526 550 5.877012 GCCGACACATCATCCTGATATTAAT 59.123 40.000 0.00 0.00 34.28 1.40
532 556 1.069823 GAGCCGACACATCATCCTGAT 59.930 52.381 0.00 0.00 37.65 2.90
536 560 1.869767 GATTGAGCCGACACATCATCC 59.130 52.381 0.00 0.00 0.00 3.51
537 561 2.799412 GAGATTGAGCCGACACATCATC 59.201 50.000 0.00 0.00 0.00 2.92
540 564 2.468831 GAGAGATTGAGCCGACACATC 58.531 52.381 0.00 0.00 0.00 3.06
559 583 3.942130 TTCTCTTGTGAGCATCTTCGA 57.058 42.857 0.00 0.00 40.03 3.71
561 585 7.408123 CACATAATTCTCTTGTGAGCATCTTC 58.592 38.462 0.00 0.00 42.59 2.87
562 586 6.183360 GCACATAATTCTCTTGTGAGCATCTT 60.183 38.462 6.47 0.00 42.59 2.40
565 589 4.945543 TGCACATAATTCTCTTGTGAGCAT 59.054 37.500 6.47 0.00 42.59 3.79
568 592 8.068380 CACATATGCACATAATTCTCTTGTGAG 58.932 37.037 1.58 0.00 42.59 3.51
601 625 6.381481 ACACAAGCATATACATTCACCATG 57.619 37.500 0.00 0.00 39.07 3.66
618 647 2.274437 ACGCAGATGCTGATACACAAG 58.726 47.619 2.95 0.00 39.32 3.16
619 648 2.385013 ACGCAGATGCTGATACACAA 57.615 45.000 2.95 0.00 39.32 3.33
620 649 2.427095 AGTACGCAGATGCTGATACACA 59.573 45.455 2.95 0.00 39.32 3.72
621 650 3.085443 AGTACGCAGATGCTGATACAC 57.915 47.619 2.95 0.00 39.32 2.90
635 664 3.008923 AGGGAGGGAGTAGTATAGTACGC 59.991 52.174 11.79 11.79 0.00 4.42
637 666 4.323409 CGGAGGGAGGGAGTAGTATAGTAC 60.323 54.167 9.38 9.38 0.00 2.73
640 669 2.643801 ACGGAGGGAGGGAGTAGTATAG 59.356 54.545 0.00 0.00 0.00 1.31
641 670 2.711174 ACGGAGGGAGGGAGTAGTATA 58.289 52.381 0.00 0.00 0.00 1.47
642 671 1.532038 ACGGAGGGAGGGAGTAGTAT 58.468 55.000 0.00 0.00 0.00 2.12
643 672 1.213926 GAACGGAGGGAGGGAGTAGTA 59.786 57.143 0.00 0.00 0.00 1.82
644 673 0.033306 GAACGGAGGGAGGGAGTAGT 60.033 60.000 0.00 0.00 0.00 2.73
645 674 0.756070 GGAACGGAGGGAGGGAGTAG 60.756 65.000 0.00 0.00 0.00 2.57
646 675 1.219824 AGGAACGGAGGGAGGGAGTA 61.220 60.000 0.00 0.00 0.00 2.59
647 676 1.219824 TAGGAACGGAGGGAGGGAGT 61.220 60.000 0.00 0.00 0.00 3.85
648 677 0.032416 TTAGGAACGGAGGGAGGGAG 60.032 60.000 0.00 0.00 0.00 4.30
649 678 0.414629 TTTAGGAACGGAGGGAGGGA 59.585 55.000 0.00 0.00 0.00 4.20
650 679 1.508256 ATTTAGGAACGGAGGGAGGG 58.492 55.000 0.00 0.00 0.00 4.30
651 680 4.976540 AATATTTAGGAACGGAGGGAGG 57.023 45.455 0.00 0.00 0.00 4.30
652 681 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
654 683 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
655 684 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
656 685 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
657 686 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
658 687 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
691 720 9.609346 ATTTTGCTCCGTATGTAGTTACTTATT 57.391 29.630 0.00 0.00 0.00 1.40
692 721 9.042008 CATTTTGCTCCGTATGTAGTTACTTAT 57.958 33.333 0.00 0.00 0.00 1.73
693 722 8.252417 TCATTTTGCTCCGTATGTAGTTACTTA 58.748 33.333 0.00 0.00 0.00 2.24
694 723 7.101054 TCATTTTGCTCCGTATGTAGTTACTT 58.899 34.615 0.00 0.00 0.00 2.24
695 724 6.636705 TCATTTTGCTCCGTATGTAGTTACT 58.363 36.000 0.00 0.00 0.00 2.24
696 725 6.534079 ACTCATTTTGCTCCGTATGTAGTTAC 59.466 38.462 0.00 0.00 0.00 2.50
698 727 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
699 728 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
700 729 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
702 731 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
704 733 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
705 734 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
706 735 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
708 737 4.494855 GCGTAGATTCACTCATTTTGCTCC 60.495 45.833 0.00 0.00 0.00 4.70
709 738 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
711 740 4.331168 AGAGCGTAGATTCACTCATTTTGC 59.669 41.667 0.00 0.00 0.00 3.68
712 741 7.525688 TTAGAGCGTAGATTCACTCATTTTG 57.474 36.000 0.00 0.00 0.00 2.44
713 742 8.547967 TTTTAGAGCGTAGATTCACTCATTTT 57.452 30.769 0.00 0.00 0.00 1.82
714 743 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
715 744 9.988815 ATATTTTAGAGCGTAGATTCACTCATT 57.011 29.630 0.00 0.00 0.00 2.57
716 745 9.416794 CATATTTTAGAGCGTAGATTCACTCAT 57.583 33.333 0.00 0.00 0.00 2.90
717 746 8.414003 ACATATTTTAGAGCGTAGATTCACTCA 58.586 33.333 0.00 0.00 0.00 3.41
719 748 8.634444 AGACATATTTTAGAGCGTAGATTCACT 58.366 33.333 0.00 0.00 0.00 3.41
720 749 8.804688 AGACATATTTTAGAGCGTAGATTCAC 57.195 34.615 0.00 0.00 0.00 3.18
737 766 8.618677 CCACGTACGGATGTATATAGACATATT 58.381 37.037 21.06 3.62 40.18 1.28
738 767 7.772292 ACCACGTACGGATGTATATAGACATAT 59.228 37.037 21.06 5.08 40.18 1.78
740 769 5.942236 ACCACGTACGGATGTATATAGACAT 59.058 40.000 21.06 12.70 42.82 3.06
741 770 5.308014 ACCACGTACGGATGTATATAGACA 58.692 41.667 21.06 2.07 32.11 3.41
742 771 5.869753 ACCACGTACGGATGTATATAGAC 57.130 43.478 21.06 0.00 32.11 2.59
743 772 7.280876 GGATTACCACGTACGGATGTATATAGA 59.719 40.741 21.06 3.08 35.97 1.98
744 773 7.066163 TGGATTACCACGTACGGATGTATATAG 59.934 40.741 21.06 0.00 41.77 1.31
745 774 6.883756 TGGATTACCACGTACGGATGTATATA 59.116 38.462 21.06 3.74 41.77 0.86
746 775 5.711506 TGGATTACCACGTACGGATGTATAT 59.288 40.000 21.06 12.24 41.77 0.86
749 778 3.286353 TGGATTACCACGTACGGATGTA 58.714 45.455 21.06 14.02 41.77 2.29
751 780 2.875087 TGGATTACCACGTACGGATG 57.125 50.000 21.06 9.60 41.77 3.51
808 849 9.969001 AAGCAAATCCCTTTTTACATAGTACTA 57.031 29.630 4.77 4.77 0.00 1.82
809 850 8.879427 AAGCAAATCCCTTTTTACATAGTACT 57.121 30.769 0.00 0.00 0.00 2.73
810 851 9.999009 GTAAGCAAATCCCTTTTTACATAGTAC 57.001 33.333 0.00 0.00 0.00 2.73
849 3147 6.528072 CGAAATGGAAAAACTCTAGCAAATCC 59.472 38.462 0.00 0.00 0.00 3.01
855 3153 5.607119 TGTCGAAATGGAAAAACTCTAGC 57.393 39.130 0.00 0.00 0.00 3.42
873 3171 2.783828 ACCTAGCAGATTCGATGTCG 57.216 50.000 0.00 0.00 41.45 4.35
874 3172 3.001736 GCAAACCTAGCAGATTCGATGTC 59.998 47.826 0.00 0.00 0.00 3.06
875 3173 2.939103 GCAAACCTAGCAGATTCGATGT 59.061 45.455 0.00 0.00 0.00 3.06
876 3174 3.002042 CAGCAAACCTAGCAGATTCGATG 59.998 47.826 0.00 0.00 0.00 3.84
879 3177 2.350522 ACAGCAAACCTAGCAGATTCG 58.649 47.619 0.00 0.00 0.00 3.34
892 3190 0.110295 TGCAGCCTCCTTACAGCAAA 59.890 50.000 0.00 0.00 0.00 3.68
930 3228 0.108138 GCACACGCAGACCCTTCTAT 60.108 55.000 0.00 0.00 38.36 1.98
944 3250 1.951181 TTTAGCATCGCGTCGCACAC 61.951 55.000 18.75 3.18 0.00 3.82
958 3264 1.771291 GTGTTGTGCGTTTCGTTTAGC 59.229 47.619 0.00 0.00 0.00 3.09
1254 3564 1.001631 TGGGATGGAGCGGAAGAGA 59.998 57.895 0.00 0.00 0.00 3.10
1377 3687 5.072040 AGATCATGACGTTGTATGTCACA 57.928 39.130 0.00 0.00 45.78 3.58
1434 3744 1.588861 GCAAGATCGAAGTACTTCCGC 59.411 52.381 26.12 16.57 36.27 5.54
1518 3828 1.986882 ACAACTCCCTTGCTTCTTGG 58.013 50.000 0.00 0.00 32.41 3.61
1595 3905 2.819595 CCATCCGACCCAACTGCG 60.820 66.667 0.00 0.00 0.00 5.18
2111 4421 1.768684 ATTCACCCACTCACCGCACT 61.769 55.000 0.00 0.00 0.00 4.40
2370 4680 0.597377 GTGCTTCCTTGCCAAAACCG 60.597 55.000 0.00 0.00 0.00 4.44
2497 6266 4.402155 CAGCACTAATTCCCCATAAAGCAA 59.598 41.667 0.00 0.00 0.00 3.91
2685 6455 6.426328 AGAAGAGCACAAGTATGAGTTCTTTG 59.574 38.462 6.76 0.00 43.74 2.77
2688 6458 5.736951 AGAAGAGCACAAGTATGAGTTCT 57.263 39.130 0.00 0.00 38.86 3.01
2813 6593 1.078709 CGCTGTCACACCGAAATCAT 58.921 50.000 0.00 0.00 0.00 2.45
2814 6594 0.032815 TCGCTGTCACACCGAAATCA 59.967 50.000 0.00 0.00 0.00 2.57
3528 7308 3.738982 CAGTCACCAGTAATCACCACAA 58.261 45.455 0.00 0.00 0.00 3.33
3847 7628 3.374058 ACCGACACATGCATAGCTAAAAC 59.626 43.478 0.00 0.00 0.00 2.43
4062 7847 1.067821 GTTCATCCTGTAGAGGGCTCG 59.932 57.143 6.00 0.00 40.25 5.03
4195 7980 4.765273 TGCGTCAACTATCCATGTAATGT 58.235 39.130 0.00 0.00 44.81 2.71
4197 7982 5.277974 GCAATGCGTCAACTATCCATGTAAT 60.278 40.000 0.00 0.00 0.00 1.89
4199 7984 3.559655 GCAATGCGTCAACTATCCATGTA 59.440 43.478 0.00 0.00 0.00 2.29
4333 8119 0.961019 GCATGAACTGAAGGCAACCA 59.039 50.000 0.00 0.00 37.17 3.67
4489 8275 2.159382 AGGTAAACATCTTGCAACCCG 58.841 47.619 0.00 0.00 0.00 5.28



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.