Multiple sequence alignment - TraesCS5D01G188200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G188200 chr5D 100.000 7537 0 0 1 7537 290078608 290071072 0.000000e+00 13919.0
1 TraesCS5D01G188200 chr5D 76.333 469 83 15 3631 4082 35166004 35166461 7.610000e-55 226.0
2 TraesCS5D01G188200 chr5D 80.220 91 17 1 6403 6492 413066436 413066346 4.880000e-07 67.6
3 TraesCS5D01G188200 chr5A 95.614 4036 127 24 205 4220 382570806 382566801 0.000000e+00 6427.0
4 TraesCS5D01G188200 chr5A 94.682 1429 49 9 5747 7155 382564732 382563311 0.000000e+00 2193.0
5 TraesCS5D01G188200 chr5A 95.252 1053 38 9 4219 5264 382566639 382565592 0.000000e+00 1657.0
6 TraesCS5D01G188200 chr5A 94.850 466 15 6 5263 5725 382565478 382565019 0.000000e+00 719.0
7 TraesCS5D01G188200 chr5A 87.903 124 10 3 3631 3753 23817073 23817192 2.840000e-29 141.0
8 TraesCS5D01G188200 chr5A 81.319 91 16 1 6403 6492 525116173 525116083 1.050000e-08 73.1
9 TraesCS5D01G188200 chr5A 96.970 33 1 0 7205 7237 551466658 551466690 1.000000e-03 56.5
10 TraesCS5D01G188200 chr5B 95.397 2151 90 6 1291 3434 330852104 330849956 0.000000e+00 3415.0
11 TraesCS5D01G188200 chr5B 96.016 1230 31 8 5764 6986 330847225 330846007 0.000000e+00 1984.0
12 TraesCS5D01G188200 chr5B 92.607 1258 53 19 1 1247 330853518 330852290 0.000000e+00 1772.0
13 TraesCS5D01G188200 chr5B 94.860 895 34 9 4207 5097 330849013 330848127 0.000000e+00 1387.0
14 TraesCS5D01G188200 chr5B 96.088 818 21 6 3405 4214 330849946 330849132 0.000000e+00 1323.0
15 TraesCS5D01G188200 chr5B 92.817 529 13 8 5256 5778 330847754 330847245 0.000000e+00 743.0
16 TraesCS5D01G188200 chr5B 95.541 157 7 0 5101 5257 330847993 330847837 1.260000e-62 252.0
17 TraesCS5D01G188200 chr5B 94.068 118 7 0 7420 7537 330818938 330818821 6.010000e-41 180.0
18 TraesCS5D01G188200 chr5B 93.258 89 6 0 7238 7326 330845505 330845417 1.710000e-26 132.0
19 TraesCS5D01G188200 chr5B 82.667 75 13 0 6418 6492 497903880 497903806 4.880000e-07 67.6
20 TraesCS5D01G188200 chr4B 83.636 110 17 1 5105 5213 653007704 653007813 1.340000e-17 102.0
21 TraesCS5D01G188200 chr3B 77.193 114 19 6 5171 5282 474395386 474395494 8.170000e-05 60.2
22 TraesCS5D01G188200 chr4A 83.607 61 10 0 7177 7237 303754394 303754454 2.940000e-04 58.4
23 TraesCS5D01G188200 chr7A 94.444 36 2 0 7202 7237 211195292 211195327 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G188200 chr5D 290071072 290078608 7536 True 13919 13919 100.0000 1 7537 1 chr5D.!!$R1 7536
1 TraesCS5D01G188200 chr5A 382563311 382570806 7495 True 2749 6427 95.0995 205 7155 4 chr5A.!!$R2 6950
2 TraesCS5D01G188200 chr5B 330845417 330853518 8101 True 1376 3415 94.5730 1 7326 8 chr5B.!!$R3 7325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 661 0.034896 TTCCTTCCTTCCTGTGACGC 59.965 55.000 0.00 0.00 0.00 5.19 F
647 662 1.118965 TCCTTCCTTCCTGTGACGCA 61.119 55.000 0.00 0.00 0.00 5.24 F
2008 2167 0.253044 AATGGGATCTGGACCGTGTG 59.747 55.000 0.00 0.00 0.00 3.82 F
2585 2751 0.953471 CGGCCAAATCCGTCTGAACA 60.953 55.000 2.24 0.00 44.18 3.18 F
2858 3024 0.737715 GTGACGAGGATGCACTGGAC 60.738 60.000 0.00 0.00 0.00 4.02 F
4217 4436 1.462670 GTGCAGTGCAGTAGCTCTTTC 59.537 52.381 20.42 0.00 42.28 2.62 F
5022 5420 0.754217 AGGGGCATATTGCTGCACTG 60.754 55.000 0.00 1.53 45.13 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 2034 1.077501 GCAGCCCAGATAAGCCACA 60.078 57.895 0.00 0.0 0.00 4.17 R
2577 2743 1.156736 CCACGGTTCCATGTTCAGAC 58.843 55.000 0.00 0.0 0.00 3.51 R
2858 3024 1.854126 CTTGTGGAAGCAAAAACAGCG 59.146 47.619 0.00 0.0 37.01 5.18 R
4199 4418 2.091852 AGAAAGAGCTACTGCACTGC 57.908 50.000 0.00 0.0 39.93 4.40 R
4704 5101 2.162408 GGAGACTCGGATTTGCCTTTTG 59.838 50.000 0.00 0.0 0.00 2.44 R
5445 6093 1.064017 ACTTGCAGGGACTCCAAAACA 60.064 47.619 0.00 0.0 34.60 2.83 R
7009 7981 0.179145 AGTCACTATACGTGCACCGC 60.179 55.000 12.15 0.0 43.46 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.264794 GACCACGCCGAGACCAAT 59.735 61.111 0.00 0.00 0.00 3.16
67 68 2.094545 GCCGAGACCAATCAAATTTGCT 60.095 45.455 13.54 0.29 0.00 3.91
68 69 3.614870 GCCGAGACCAATCAAATTTGCTT 60.615 43.478 13.54 7.39 0.00 3.91
71 72 5.221880 CGAGACCAATCAAATTTGCTTCAA 58.778 37.500 13.54 0.00 0.00 2.69
73 74 5.916318 AGACCAATCAAATTTGCTTCAACA 58.084 33.333 13.54 0.00 0.00 3.33
74 75 6.527423 AGACCAATCAAATTTGCTTCAACAT 58.473 32.000 13.54 0.00 0.00 2.71
76 77 6.289834 ACCAATCAAATTTGCTTCAACATGA 58.710 32.000 13.54 0.00 0.00 3.07
77 78 6.938030 ACCAATCAAATTTGCTTCAACATGAT 59.062 30.769 13.54 0.00 0.00 2.45
78 79 7.094975 ACCAATCAAATTTGCTTCAACATGATG 60.095 33.333 13.54 0.00 0.00 3.07
79 80 7.118535 CCAATCAAATTTGCTTCAACATGATGA 59.881 33.333 13.54 0.83 0.00 2.92
90 91 7.381948 TGCTTCAACATGATGATTGTTTTACAC 59.618 33.333 6.49 0.00 35.18 2.90
101 102 6.119536 TGATTGTTTTACACCACTCTCTTGT 58.880 36.000 0.00 0.00 0.00 3.16
104 105 6.189677 TGTTTTACACCACTCTCTTGTTTG 57.810 37.500 0.00 0.00 0.00 2.93
111 112 3.316308 ACCACTCTCTTGTTTGAACATGC 59.684 43.478 0.00 0.00 38.95 4.06
123 124 4.421033 TTGAACATGCGCCGTAAAATAA 57.579 36.364 4.18 0.00 0.00 1.40
128 129 2.250348 TGCGCCGTAAAATAAAGCAC 57.750 45.000 4.18 0.00 0.00 4.40
140 141 6.819397 AAAATAAAGCACCCACTAGAAGAC 57.181 37.500 0.00 0.00 0.00 3.01
159 160 5.878332 AGACAATCGTGATGTATTTTGCA 57.122 34.783 0.00 0.00 0.00 4.08
170 171 6.143758 GTGATGTATTTTGCAACAAACATCGT 59.856 34.615 26.25 9.26 43.81 3.73
176 177 5.431420 TTTGCAACAAACATCGTAGATGT 57.569 34.783 9.61 9.61 45.12 3.06
208 217 1.444119 AAATGCACGCCGACACAAGT 61.444 50.000 0.00 0.00 0.00 3.16
231 240 7.607250 AGTATCTTGAGATTGAGAACGTCTTT 58.393 34.615 0.00 0.00 36.05 2.52
238 247 7.158697 TGAGATTGAGAACGTCTTTTTCCATA 58.841 34.615 0.00 0.00 0.00 2.74
242 251 9.626045 GATTGAGAACGTCTTTTTCCATAAAAT 57.374 29.630 0.00 0.00 34.62 1.82
246 255 9.626045 GAGAACGTCTTTTTCCATAAAATGAAT 57.374 29.630 0.00 0.00 39.24 2.57
250 259 9.716507 ACGTCTTTTTCCATAAAATGAATATCG 57.283 29.630 0.00 0.00 39.24 2.92
288 297 7.647907 AACAAATCTAGAAAAATGCAAGCAG 57.352 32.000 0.00 0.00 0.00 4.24
289 298 6.985117 ACAAATCTAGAAAAATGCAAGCAGA 58.015 32.000 0.00 0.00 0.00 4.26
290 299 7.088905 ACAAATCTAGAAAAATGCAAGCAGAG 58.911 34.615 0.00 0.00 0.00 3.35
291 300 6.830873 AATCTAGAAAAATGCAAGCAGAGT 57.169 33.333 0.00 0.00 0.00 3.24
292 301 7.928307 AATCTAGAAAAATGCAAGCAGAGTA 57.072 32.000 0.00 0.00 0.00 2.59
627 642 3.322466 CAGACGCCACCCCTTCCT 61.322 66.667 0.00 0.00 0.00 3.36
643 658 2.415983 TCCTTCCTTCCTTCCTGTGA 57.584 50.000 0.00 0.00 0.00 3.58
644 659 1.978580 TCCTTCCTTCCTTCCTGTGAC 59.021 52.381 0.00 0.00 0.00 3.67
645 660 1.338200 CCTTCCTTCCTTCCTGTGACG 60.338 57.143 0.00 0.00 0.00 4.35
646 661 0.034896 TTCCTTCCTTCCTGTGACGC 59.965 55.000 0.00 0.00 0.00 5.19
647 662 1.118965 TCCTTCCTTCCTGTGACGCA 61.119 55.000 0.00 0.00 0.00 5.24
1250 1265 3.484547 CAAGGTAACGCCGTCGCC 61.485 66.667 0.00 0.00 43.70 5.54
1304 1461 4.566488 CCCCTTAGATACATTGCATCTCCC 60.566 50.000 2.58 0.00 34.58 4.30
1312 1469 1.330655 ATTGCATCTCCCGTCGTCCT 61.331 55.000 0.00 0.00 0.00 3.85
1398 1555 1.200020 CGCCCTTTGTGCTTTTCTAGG 59.800 52.381 0.00 0.00 0.00 3.02
1422 1579 5.983333 AATGGAAGATCTACATTCCTGGT 57.017 39.130 15.95 1.01 44.46 4.00
1431 1588 2.034066 ATTCCTGGTGTGTGCCCG 59.966 61.111 0.00 0.00 0.00 6.13
1476 1633 3.259064 TGGCGTGTTTAATCACTCTAGC 58.741 45.455 13.38 9.45 36.33 3.42
1546 1705 5.526479 GGAGTTGGGAATATTCGGTTCTAAC 59.474 44.000 9.32 9.29 0.00 2.34
1669 1828 5.066893 TGCAGCCATCATTTTTAGATGACTC 59.933 40.000 4.84 0.00 44.34 3.36
1685 1844 5.995282 AGATGACTCGGTGTTTAATTTGACA 59.005 36.000 0.00 0.00 0.00 3.58
1686 1845 6.485313 AGATGACTCGGTGTTTAATTTGACAA 59.515 34.615 0.00 0.00 0.00 3.18
1729 1888 2.159240 GGATTTGTGAAGGGGATTTCGC 60.159 50.000 0.00 0.00 37.92 4.70
1956 2115 9.436957 ACTTTATTTGGTCTACTGATGTTGTAG 57.563 33.333 0.00 0.00 38.85 2.74
1958 2117 8.997621 TTATTTGGTCTACTGATGTTGTAGTC 57.002 34.615 0.00 0.00 38.67 2.59
2008 2167 0.253044 AATGGGATCTGGACCGTGTG 59.747 55.000 0.00 0.00 0.00 3.82
2014 2173 3.306088 GGGATCTGGACCGTGTGTATATG 60.306 52.174 0.00 0.00 0.00 1.78
2082 2241 5.522456 CATGACGTGCCTGCATATTAATTT 58.478 37.500 0.00 0.00 0.00 1.82
2084 2243 5.960113 TGACGTGCCTGCATATTAATTTTT 58.040 33.333 0.00 0.00 0.00 1.94
2085 2244 6.033341 TGACGTGCCTGCATATTAATTTTTC 58.967 36.000 0.00 0.00 0.00 2.29
2168 2327 9.754382 ATTTATGAATAAATGGAATGACTGTGC 57.246 29.630 7.35 0.00 40.42 4.57
2199 2358 8.706322 AAATAGAACCACTGGTAAATTTCTGT 57.294 30.769 0.00 0.00 33.12 3.41
2205 2364 6.539173 ACCACTGGTAAATTTCTGTATGACA 58.461 36.000 0.00 0.00 32.11 3.58
2551 2717 1.400494 ACAAACGGCTGTGAAGTGTTC 59.600 47.619 0.00 0.00 0.00 3.18
2577 2743 6.849177 GTTCATAAACAAACGGCCAAATCCG 61.849 44.000 2.24 0.14 43.71 4.18
2585 2751 0.953471 CGGCCAAATCCGTCTGAACA 60.953 55.000 2.24 0.00 44.18 3.18
2755 2921 9.308000 ACAAAATCAGATTATGTCTTTAACCCA 57.692 29.630 0.00 0.00 34.00 4.51
2858 3024 0.737715 GTGACGAGGATGCACTGGAC 60.738 60.000 0.00 0.00 0.00 4.02
3056 3222 1.798813 GGTGAAAGTGTACAGAAGCCG 59.201 52.381 0.00 0.00 0.00 5.52
3206 3372 4.215399 TGCACAAACTGCCTTAACTGATAC 59.785 41.667 0.00 0.00 46.51 2.24
3216 3382 8.893727 ACTGCCTTAACTGATACAATTCATTAC 58.106 33.333 0.00 0.00 0.00 1.89
3613 3824 7.477422 CGTTATTTTTCTTGTTCATACCAGACG 59.523 37.037 0.00 0.00 0.00 4.18
3624 3835 5.196341 TCATACCAGACGGATATTGACAC 57.804 43.478 0.00 0.00 35.59 3.67
3770 3981 5.830991 ACCAAGGCATGTTACAGTTCTTTTA 59.169 36.000 0.00 0.00 0.00 1.52
3804 4015 8.443160 CAATCTTTGCATCGAGTCTTTTAACTA 58.557 33.333 0.00 0.00 0.00 2.24
4091 4302 7.509141 TTTTTCACATGCTATTCTCAGTCAA 57.491 32.000 0.00 0.00 0.00 3.18
4149 4368 2.749621 GTCCATTCAGTTCATGTCCCAC 59.250 50.000 0.00 0.00 0.00 4.61
4162 4381 2.165167 TGTCCCACCAACTACTAGACG 58.835 52.381 0.00 0.00 0.00 4.18
4199 4418 4.435436 TAGGAGTGCGCTGGCGTG 62.435 66.667 16.21 0.00 44.10 5.34
4217 4436 1.462670 GTGCAGTGCAGTAGCTCTTTC 59.537 52.381 20.42 0.00 42.28 2.62
4440 4832 3.782992 AGAAATGGTTGCCCTCAGATTT 58.217 40.909 0.00 0.00 0.00 2.17
4567 4961 9.601810 ACCTGTAATACATATCTATCTGGTTCA 57.398 33.333 0.00 0.00 0.00 3.18
4602 4996 6.979817 GCAACTTAATGAATGATGCATTGGTA 59.020 34.615 8.92 0.00 36.68 3.25
4662 5056 7.720957 TGCTACCAGATGATGTGCTAATTAAAT 59.279 33.333 0.00 0.00 0.00 1.40
4697 5094 3.763360 TGGGGCACTTATGTCATCAAAAG 59.237 43.478 0.00 0.00 29.15 2.27
4704 5101 7.698130 GGCACTTATGTCATCAAAAGTTACATC 59.302 37.037 0.00 0.00 33.15 3.06
4715 5112 8.776470 CATCAAAAGTTACATCAAAAGGCAAAT 58.224 29.630 0.00 0.00 0.00 2.32
4813 5210 6.951198 ACAAATAAAACCACATCCTACATCCA 59.049 34.615 0.00 0.00 0.00 3.41
4980 5378 2.094390 TGGTGTGCAGGTACGAGATTAC 60.094 50.000 0.00 0.00 0.00 1.89
5022 5420 0.754217 AGGGGCATATTGCTGCACTG 60.754 55.000 0.00 1.53 45.13 3.66
5128 5656 4.666431 TCCCTCCTTTTAGGTTTACAAGGT 59.334 41.667 0.00 0.00 37.77 3.50
5129 5657 5.134850 TCCCTCCTTTTAGGTTTACAAGGTT 59.865 40.000 0.00 0.00 37.77 3.50
5130 5658 5.836898 CCCTCCTTTTAGGTTTACAAGGTTT 59.163 40.000 0.00 0.00 37.77 3.27
5535 6183 3.445096 GCTTGATGTATCAGTTTGCCCTT 59.555 43.478 0.00 0.00 38.19 3.95
5638 6286 5.948162 AGTGTTGGAGATAGTCAATGCATTT 59.052 36.000 9.83 0.00 0.00 2.32
5662 6310 3.589288 AGAAGGCTTCTGGAAAGGTATGT 59.411 43.478 28.09 0.00 38.91 2.29
5665 6313 3.054802 AGGCTTCTGGAAAGGTATGTCTG 60.055 47.826 0.00 0.00 0.00 3.51
5666 6314 3.055094 GGCTTCTGGAAAGGTATGTCTGA 60.055 47.826 0.00 0.00 0.00 3.27
5667 6315 4.384647 GGCTTCTGGAAAGGTATGTCTGAT 60.385 45.833 0.00 0.00 0.00 2.90
5668 6316 5.189180 GCTTCTGGAAAGGTATGTCTGATT 58.811 41.667 0.00 0.00 0.00 2.57
5669 6317 5.649831 GCTTCTGGAAAGGTATGTCTGATTT 59.350 40.000 0.00 0.00 0.00 2.17
5670 6318 6.404074 GCTTCTGGAAAGGTATGTCTGATTTG 60.404 42.308 0.00 0.00 0.00 2.32
5671 6319 6.373005 TCTGGAAAGGTATGTCTGATTTGA 57.627 37.500 0.00 0.00 0.00 2.69
5672 6320 6.962182 TCTGGAAAGGTATGTCTGATTTGAT 58.038 36.000 0.00 0.00 0.00 2.57
5673 6321 8.089625 TCTGGAAAGGTATGTCTGATTTGATA 57.910 34.615 0.00 0.00 0.00 2.15
5674 6322 8.717717 TCTGGAAAGGTATGTCTGATTTGATAT 58.282 33.333 0.00 0.00 0.00 1.63
5676 6324 9.778741 TGGAAAGGTATGTCTGATTTGATATAC 57.221 33.333 0.00 0.00 39.05 1.47
5679 6327 8.839310 AAGGTATGTCTGATTTGATATACTGC 57.161 34.615 9.87 0.00 39.44 4.40
5707 6371 7.531857 TTTTGTAAATGCCTGATTCCTGTAA 57.468 32.000 0.00 0.00 0.00 2.41
5762 6690 7.360691 GGTTAGCATATATGACACAATCTGCTG 60.361 40.741 17.10 0.00 38.97 4.41
5833 6796 2.092699 AGGGCTTTAGAGGCTTAAGCTG 60.093 50.000 25.88 9.42 43.08 4.24
5923 6886 4.380233 GCTGCTGCAATTATTGACAAGACT 60.380 41.667 11.11 0.00 39.41 3.24
5958 6921 8.642908 TTATTACGAAGTACAATCATGGAGTG 57.357 34.615 0.00 0.00 45.76 3.51
6017 6983 1.302993 GCCCCTTCGTGCTGGTTAA 60.303 57.895 0.00 0.00 0.00 2.01
6126 7094 9.008965 AGTTAACTGTGTTGCAATGTTATCATA 57.991 29.630 7.48 0.00 33.49 2.15
6382 7351 5.600908 TCTACAATTTTTGTCAGCGGTAC 57.399 39.130 0.00 0.00 44.12 3.34
6397 7366 1.201414 CGGTACCATTCCTTTGGCAAC 59.799 52.381 13.54 0.00 40.68 4.17
6407 7376 2.029110 TCCTTTGGCAACTAAATGCTGC 60.029 45.455 0.00 0.00 45.68 5.25
6640 7609 5.479306 GCCAGTCATACAGAGAAAGTTACA 58.521 41.667 0.00 0.00 0.00 2.41
6983 7955 3.367907 AACTTTGGGGGTGTGCGGT 62.368 57.895 0.00 0.00 0.00 5.68
6984 7956 3.294493 CTTTGGGGGTGTGCGGTG 61.294 66.667 0.00 0.00 0.00 4.94
7011 7983 3.909662 CCCCCTTGAGATTGTGCG 58.090 61.111 0.00 0.00 0.00 5.34
7012 7984 1.750399 CCCCCTTGAGATTGTGCGG 60.750 63.158 0.00 0.00 0.00 5.69
7013 7985 1.002134 CCCCTTGAGATTGTGCGGT 60.002 57.895 0.00 0.00 0.00 5.68
7014 7986 1.308069 CCCCTTGAGATTGTGCGGTG 61.308 60.000 0.00 0.00 0.00 4.94
7015 7987 1.503542 CCTTGAGATTGTGCGGTGC 59.496 57.895 0.00 0.00 0.00 5.01
7016 7988 1.236616 CCTTGAGATTGTGCGGTGCA 61.237 55.000 0.00 0.00 35.60 4.57
7035 8007 2.826979 ACGTATAGTGACTCAGCGTG 57.173 50.000 7.28 0.00 0.00 5.34
7036 8008 1.202154 ACGTATAGTGACTCAGCGTGC 60.202 52.381 7.28 0.00 0.00 5.34
7037 8009 1.202143 CGTATAGTGACTCAGCGTGCA 60.202 52.381 0.00 0.00 0.00 4.57
7038 8010 2.455032 GTATAGTGACTCAGCGTGCAG 58.545 52.381 0.00 0.00 0.00 4.41
7039 8011 1.177401 ATAGTGACTCAGCGTGCAGA 58.823 50.000 0.00 0.00 0.00 4.26
7040 8012 0.958822 TAGTGACTCAGCGTGCAGAA 59.041 50.000 0.00 0.00 0.00 3.02
7041 8013 0.104855 AGTGACTCAGCGTGCAGAAA 59.895 50.000 0.00 0.00 0.00 2.52
7042 8014 1.151668 GTGACTCAGCGTGCAGAAAT 58.848 50.000 0.00 0.00 0.00 2.17
7043 8015 1.136141 GTGACTCAGCGTGCAGAAATG 60.136 52.381 0.00 0.00 0.00 2.32
7044 8016 0.179205 GACTCAGCGTGCAGAAATGC 60.179 55.000 0.00 0.00 0.00 3.56
7045 8017 0.886043 ACTCAGCGTGCAGAAATGCA 60.886 50.000 0.00 0.00 43.22 3.96
7100 8413 2.611225 AAGACGCAATCTCCTCATCC 57.389 50.000 0.00 0.00 36.27 3.51
7192 8566 3.664025 TTGCCTGTCGATGAGGGCG 62.664 63.158 13.71 0.00 46.72 6.13
7194 8568 2.202797 CCTGTCGATGAGGGCGTG 60.203 66.667 5.69 0.00 0.00 5.34
7208 8582 4.406173 CGTGCGAGGTGAGCGACT 62.406 66.667 0.00 0.00 37.44 4.18
7209 8583 2.807045 GTGCGAGGTGAGCGACTG 60.807 66.667 0.00 0.00 37.44 3.51
7214 8588 1.735920 GAGGTGAGCGACTGCACAG 60.736 63.158 0.00 0.00 42.46 3.66
7217 8591 4.687215 TGAGCGACTGCACAGGGC 62.687 66.667 2.21 5.33 46.23 5.19
7224 8598 4.619320 CTGCACAGGGCCCCCAAA 62.619 66.667 21.43 0.00 43.89 3.28
7225 8599 4.163463 TGCACAGGGCCCCCAAAA 62.163 61.111 21.43 0.00 43.89 2.44
7228 8602 1.079073 CACAGGGCCCCCAAAATCT 59.921 57.895 21.43 0.00 38.92 2.40
7229 8603 0.545071 CACAGGGCCCCCAAAATCTT 60.545 55.000 21.43 0.00 38.92 2.40
7230 8604 0.545071 ACAGGGCCCCCAAAATCTTG 60.545 55.000 21.43 9.52 38.92 3.02
7249 8623 3.857038 GGCCCAGCCCGATTCGTA 61.857 66.667 5.20 0.00 44.06 3.43
7264 8638 0.179207 TCGTACGTCTGATGTGCGAC 60.179 55.000 30.26 13.44 44.84 5.19
7316 8690 1.949257 CGGAAGGCAAAACTTCGCT 59.051 52.632 0.00 0.00 46.06 4.93
7317 8691 1.153353 CGGAAGGCAAAACTTCGCTA 58.847 50.000 0.00 0.00 46.06 4.26
7323 8697 0.811281 GCAAAACTTCGCTATGCCCT 59.189 50.000 0.00 0.00 0.00 5.19
7326 8700 3.066760 GCAAAACTTCGCTATGCCCTAAT 59.933 43.478 0.00 0.00 0.00 1.73
7327 8701 4.789802 GCAAAACTTCGCTATGCCCTAATC 60.790 45.833 0.00 0.00 0.00 1.75
7328 8702 2.841442 ACTTCGCTATGCCCTAATCC 57.159 50.000 0.00 0.00 0.00 3.01
7329 8703 2.047061 ACTTCGCTATGCCCTAATCCA 58.953 47.619 0.00 0.00 0.00 3.41
7330 8704 2.037772 ACTTCGCTATGCCCTAATCCAG 59.962 50.000 0.00 0.00 0.00 3.86
7331 8705 2.009681 TCGCTATGCCCTAATCCAGA 57.990 50.000 0.00 0.00 0.00 3.86
7332 8706 2.325484 TCGCTATGCCCTAATCCAGAA 58.675 47.619 0.00 0.00 0.00 3.02
7333 8707 2.906389 TCGCTATGCCCTAATCCAGAAT 59.094 45.455 0.00 0.00 0.00 2.40
7334 8708 3.327757 TCGCTATGCCCTAATCCAGAATT 59.672 43.478 0.00 0.00 0.00 2.17
7335 8709 4.530553 TCGCTATGCCCTAATCCAGAATTA 59.469 41.667 0.00 0.00 0.00 1.40
7336 8710 5.012664 TCGCTATGCCCTAATCCAGAATTAA 59.987 40.000 0.00 0.00 29.44 1.40
7337 8711 5.122396 CGCTATGCCCTAATCCAGAATTAAC 59.878 44.000 0.00 0.00 29.44 2.01
7338 8712 5.416013 GCTATGCCCTAATCCAGAATTAACC 59.584 44.000 0.00 0.00 29.44 2.85
7339 8713 4.178956 TGCCCTAATCCAGAATTAACCC 57.821 45.455 0.00 0.00 29.44 4.11
7340 8714 3.791545 TGCCCTAATCCAGAATTAACCCT 59.208 43.478 0.00 0.00 29.44 4.34
7341 8715 4.979039 TGCCCTAATCCAGAATTAACCCTA 59.021 41.667 0.00 0.00 29.44 3.53
7342 8716 5.615261 TGCCCTAATCCAGAATTAACCCTAT 59.385 40.000 0.00 0.00 29.44 2.57
7343 8717 6.104094 TGCCCTAATCCAGAATTAACCCTATT 59.896 38.462 0.00 0.00 29.44 1.73
7344 8718 6.659668 GCCCTAATCCAGAATTAACCCTATTC 59.340 42.308 0.00 0.00 33.23 1.75
7345 8719 7.694293 GCCCTAATCCAGAATTAACCCTATTCA 60.694 40.741 0.00 0.00 35.04 2.57
7346 8720 7.665974 CCCTAATCCAGAATTAACCCTATTCAC 59.334 40.741 0.00 0.00 35.04 3.18
7347 8721 8.440771 CCTAATCCAGAATTAACCCTATTCACT 58.559 37.037 0.00 0.00 35.04 3.41
7348 8722 9.853177 CTAATCCAGAATTAACCCTATTCACTT 57.147 33.333 0.00 0.00 35.04 3.16
7349 8723 8.753497 AATCCAGAATTAACCCTATTCACTTC 57.247 34.615 0.00 0.00 35.04 3.01
7350 8724 6.346096 TCCAGAATTAACCCTATTCACTTCG 58.654 40.000 0.00 0.00 35.04 3.79
7351 8725 5.007724 CCAGAATTAACCCTATTCACTTCGC 59.992 44.000 0.00 0.00 35.04 4.70
7352 8726 4.809426 AGAATTAACCCTATTCACTTCGCG 59.191 41.667 0.00 0.00 35.04 5.87
7353 8727 1.930567 TAACCCTATTCACTTCGCGC 58.069 50.000 0.00 0.00 0.00 6.86
7354 8728 0.743345 AACCCTATTCACTTCGCGCC 60.743 55.000 0.00 0.00 0.00 6.53
7355 8729 2.237751 CCCTATTCACTTCGCGCCG 61.238 63.158 0.00 0.00 0.00 6.46
7356 8730 2.621000 CTATTCACTTCGCGCCGC 59.379 61.111 0.00 0.00 0.00 6.53
7357 8731 2.871427 CTATTCACTTCGCGCCGCC 61.871 63.158 2.28 0.00 0.00 6.13
7358 8732 3.365291 TATTCACTTCGCGCCGCCT 62.365 57.895 2.28 0.00 0.00 5.52
7362 8736 4.980805 ACTTCGCGCCGCCTCAAA 62.981 61.111 2.28 0.00 0.00 2.69
7363 8737 3.722295 CTTCGCGCCGCCTCAAAA 61.722 61.111 2.28 0.00 0.00 2.44
7364 8738 3.248630 CTTCGCGCCGCCTCAAAAA 62.249 57.895 2.28 0.00 0.00 1.94
7365 8739 3.530398 TTCGCGCCGCCTCAAAAAC 62.530 57.895 2.28 0.00 0.00 2.43
7367 8741 3.972276 GCGCCGCCTCAAAAACCA 61.972 61.111 0.00 0.00 0.00 3.67
7368 8742 2.725008 CGCCGCCTCAAAAACCAA 59.275 55.556 0.00 0.00 0.00 3.67
7369 8743 1.288752 CGCCGCCTCAAAAACCAAT 59.711 52.632 0.00 0.00 0.00 3.16
7370 8744 0.732538 CGCCGCCTCAAAAACCAATC 60.733 55.000 0.00 0.00 0.00 2.67
7371 8745 0.316841 GCCGCCTCAAAAACCAATCA 59.683 50.000 0.00 0.00 0.00 2.57
7372 8746 1.270041 GCCGCCTCAAAAACCAATCAA 60.270 47.619 0.00 0.00 0.00 2.57
7373 8747 2.403259 CCGCCTCAAAAACCAATCAAC 58.597 47.619 0.00 0.00 0.00 3.18
7374 8748 2.403259 CGCCTCAAAAACCAATCAACC 58.597 47.619 0.00 0.00 0.00 3.77
7375 8749 2.035832 CGCCTCAAAAACCAATCAACCT 59.964 45.455 0.00 0.00 0.00 3.50
7376 8750 3.653344 GCCTCAAAAACCAATCAACCTC 58.347 45.455 0.00 0.00 0.00 3.85
7377 8751 3.857010 GCCTCAAAAACCAATCAACCTCG 60.857 47.826 0.00 0.00 0.00 4.63
7378 8752 3.308530 CTCAAAAACCAATCAACCTCGC 58.691 45.455 0.00 0.00 0.00 5.03
7379 8753 2.050691 CAAAAACCAATCAACCTCGCG 58.949 47.619 0.00 0.00 0.00 5.87
7380 8754 1.314730 AAAACCAATCAACCTCGCGT 58.685 45.000 5.77 0.00 0.00 6.01
7381 8755 0.872388 AAACCAATCAACCTCGCGTC 59.128 50.000 5.77 0.00 0.00 5.19
7382 8756 1.289109 AACCAATCAACCTCGCGTCG 61.289 55.000 5.77 0.00 0.00 5.12
7383 8757 2.395690 CAATCAACCTCGCGTCGC 59.604 61.111 7.29 7.29 0.00 5.19
7384 8758 2.813908 AATCAACCTCGCGTCGCC 60.814 61.111 12.44 0.00 0.00 5.54
7388 8762 4.849329 AACCTCGCGTCGCCGATC 62.849 66.667 12.44 0.00 36.54 3.69
7401 8775 4.563630 CGATCGGTTCGGTGAACA 57.436 55.556 7.38 0.00 43.54 3.18
7402 8776 2.817035 CGATCGGTTCGGTGAACAA 58.183 52.632 7.38 0.14 43.54 2.83
7403 8777 1.355971 CGATCGGTTCGGTGAACAAT 58.644 50.000 7.38 4.66 43.54 2.71
7404 8778 2.532235 CGATCGGTTCGGTGAACAATA 58.468 47.619 7.38 0.00 43.54 1.90
7405 8779 2.280708 CGATCGGTTCGGTGAACAATAC 59.719 50.000 7.38 0.67 43.54 1.89
7406 8780 2.816204 TCGGTTCGGTGAACAATACA 57.184 45.000 11.39 0.00 43.54 2.29
7407 8781 3.322211 TCGGTTCGGTGAACAATACAT 57.678 42.857 11.39 0.00 43.54 2.29
7408 8782 3.255725 TCGGTTCGGTGAACAATACATC 58.744 45.455 11.39 0.00 43.54 3.06
7409 8783 3.056393 TCGGTTCGGTGAACAATACATCT 60.056 43.478 11.39 0.00 43.54 2.90
7410 8784 3.306166 CGGTTCGGTGAACAATACATCTC 59.694 47.826 11.39 0.00 43.54 2.75
7411 8785 4.250464 GGTTCGGTGAACAATACATCTCA 58.750 43.478 11.39 0.00 43.54 3.27
7412 8786 4.092968 GGTTCGGTGAACAATACATCTCAC 59.907 45.833 11.39 0.00 43.54 3.51
7413 8787 3.507786 TCGGTGAACAATACATCTCACG 58.492 45.455 0.00 0.00 39.26 4.35
7414 8788 2.029244 CGGTGAACAATACATCTCACGC 59.971 50.000 0.00 0.00 39.26 5.34
7415 8789 2.351726 GGTGAACAATACATCTCACGCC 59.648 50.000 0.00 0.00 39.26 5.68
7416 8790 2.351726 GTGAACAATACATCTCACGCCC 59.648 50.000 0.00 0.00 0.00 6.13
7417 8791 1.940613 GAACAATACATCTCACGCCCC 59.059 52.381 0.00 0.00 0.00 5.80
7418 8792 0.179084 ACAATACATCTCACGCCCCG 60.179 55.000 0.00 0.00 0.00 5.73
7419 8793 1.227556 AATACATCTCACGCCCCGC 60.228 57.895 0.00 0.00 0.00 6.13
7434 8808 4.072088 CGCGGTGAACGGAGCAAC 62.072 66.667 0.00 0.00 44.51 4.17
7436 8810 3.411351 CGGTGAACGGAGCAACGG 61.411 66.667 5.09 0.00 42.38 4.44
7437 8811 2.029964 GGTGAACGGAGCAACGGA 59.970 61.111 5.09 0.00 38.39 4.69
7438 8812 1.595929 GGTGAACGGAGCAACGGAA 60.596 57.895 5.09 0.00 38.39 4.30
7439 8813 1.161563 GGTGAACGGAGCAACGGAAA 61.162 55.000 5.09 0.00 38.39 3.13
7440 8814 0.041576 GTGAACGGAGCAACGGAAAC 60.042 55.000 5.09 0.00 38.39 2.78
7454 8828 0.751452 GGAAACGGTAGGCTCTAGGG 59.249 60.000 0.00 0.00 0.00 3.53
7455 8829 1.687368 GGAAACGGTAGGCTCTAGGGA 60.687 57.143 0.00 0.00 0.00 4.20
7456 8830 1.682323 GAAACGGTAGGCTCTAGGGAG 59.318 57.143 0.00 0.00 42.18 4.30
7464 8838 4.860881 CTCTAGGGAGCCCGGCCA 62.861 72.222 5.55 0.00 41.95 5.36
7478 8852 4.124351 GCCACCGACATCGACCGA 62.124 66.667 2.09 0.00 43.02 4.69
7479 8853 2.202570 CCACCGACATCGACCGAC 60.203 66.667 2.09 0.00 43.02 4.79
7480 8854 2.576053 CACCGACATCGACCGACG 60.576 66.667 2.09 3.86 43.02 5.12
7484 8858 4.471726 GACATCGACCGACGGCGT 62.472 66.667 14.65 14.65 42.82 5.68
7485 8859 4.471726 ACATCGACCGACGGCGTC 62.472 66.667 29.06 29.06 42.82 5.19
7500 8874 4.719369 GTCGCTGAGGCCGACGTT 62.719 66.667 0.00 0.00 34.47 3.99
7501 8875 4.717629 TCGCTGAGGCCGACGTTG 62.718 66.667 0.00 0.00 34.44 4.10
7502 8876 4.717629 CGCTGAGGCCGACGTTGA 62.718 66.667 3.74 0.00 34.44 3.18
7503 8877 3.112709 GCTGAGGCCGACGTTGAC 61.113 66.667 3.74 0.00 0.00 3.18
7504 8878 2.805353 CTGAGGCCGACGTTGACG 60.805 66.667 3.74 1.41 46.33 4.35
7505 8879 3.263503 CTGAGGCCGACGTTGACGA 62.264 63.158 10.87 0.00 43.02 4.20
7506 8880 2.181021 GAGGCCGACGTTGACGAT 59.819 61.111 10.87 0.00 43.02 3.73
7507 8881 1.307355 TGAGGCCGACGTTGACGATA 61.307 55.000 10.87 0.00 43.02 2.92
7508 8882 0.179156 GAGGCCGACGTTGACGATAA 60.179 55.000 10.87 0.00 43.02 1.75
7509 8883 0.244450 AGGCCGACGTTGACGATAAA 59.756 50.000 10.87 0.00 43.02 1.40
7510 8884 0.367887 GGCCGACGTTGACGATAAAC 59.632 55.000 10.87 0.00 43.02 2.01
7511 8885 1.062258 GCCGACGTTGACGATAAACA 58.938 50.000 10.87 0.00 43.02 2.83
7512 8886 1.456544 GCCGACGTTGACGATAAACAA 59.543 47.619 10.87 0.00 43.02 2.83
7513 8887 2.471749 GCCGACGTTGACGATAAACAAG 60.472 50.000 10.87 0.00 43.02 3.16
7514 8888 2.981805 CCGACGTTGACGATAAACAAGA 59.018 45.455 10.87 0.00 43.02 3.02
7515 8889 3.426191 CCGACGTTGACGATAAACAAGAA 59.574 43.478 10.87 0.00 43.02 2.52
7516 8890 4.084952 CCGACGTTGACGATAAACAAGAAA 60.085 41.667 10.87 0.00 43.02 2.52
7517 8891 5.425398 CGACGTTGACGATAAACAAGAAAA 58.575 37.500 10.87 0.00 43.02 2.29
7518 8892 5.555191 CGACGTTGACGATAAACAAGAAAAG 59.445 40.000 10.87 0.00 43.02 2.27
7519 8893 6.560799 CGACGTTGACGATAAACAAGAAAAGA 60.561 38.462 10.87 0.00 43.02 2.52
7520 8894 7.186021 ACGTTGACGATAAACAAGAAAAGAT 57.814 32.000 10.87 0.00 43.02 2.40
7521 8895 7.288672 ACGTTGACGATAAACAAGAAAAGATC 58.711 34.615 10.87 0.00 43.02 2.75
7522 8896 7.170998 ACGTTGACGATAAACAAGAAAAGATCT 59.829 33.333 10.87 0.00 43.02 2.75
7523 8897 7.684489 CGTTGACGATAAACAAGAAAAGATCTC 59.316 37.037 0.00 0.00 43.02 2.75
7524 8898 7.278211 TGACGATAAACAAGAAAAGATCTCG 57.722 36.000 0.00 0.00 37.42 4.04
7525 8899 6.095947 ACGATAAACAAGAAAAGATCTCGC 57.904 37.500 0.00 0.00 37.42 5.03
7526 8900 5.063564 ACGATAAACAAGAAAAGATCTCGCC 59.936 40.000 0.00 0.00 37.42 5.54
7527 8901 3.813529 AAACAAGAAAAGATCTCGCCG 57.186 42.857 0.00 0.00 37.42 6.46
7528 8902 2.457366 ACAAGAAAAGATCTCGCCGT 57.543 45.000 0.00 0.00 37.42 5.68
7529 8903 2.069273 ACAAGAAAAGATCTCGCCGTG 58.931 47.619 0.00 0.00 37.42 4.94
7530 8904 2.288825 ACAAGAAAAGATCTCGCCGTGA 60.289 45.455 0.00 0.00 37.42 4.35
7531 8905 2.736721 CAAGAAAAGATCTCGCCGTGAA 59.263 45.455 0.00 0.00 37.42 3.18
7532 8906 3.040147 AGAAAAGATCTCGCCGTGAAA 57.960 42.857 0.00 0.00 30.46 2.69
7533 8907 2.996621 AGAAAAGATCTCGCCGTGAAAG 59.003 45.455 0.00 0.00 30.46 2.62
7534 8908 1.079503 AAAGATCTCGCCGTGAAAGC 58.920 50.000 0.00 0.00 0.00 3.51
7535 8909 0.247736 AAGATCTCGCCGTGAAAGCT 59.752 50.000 0.00 0.00 0.00 3.74
7536 8910 0.459237 AGATCTCGCCGTGAAAGCTG 60.459 55.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.797471 TGAAGCAAATTTGATTGGTCTCG 58.203 39.130 25.20 0.00 39.92 4.04
50 51 5.916318 TGTTGAAGCAAATTTGATTGGTCT 58.084 33.333 25.20 7.13 39.92 3.85
57 58 7.658167 ACAATCATCATGTTGAAGCAAATTTGA 59.342 29.630 22.31 0.00 0.00 2.69
67 68 7.651304 GTGGTGTAAAACAATCATCATGTTGAA 59.349 33.333 10.41 0.00 39.98 2.69
68 69 7.014134 AGTGGTGTAAAACAATCATCATGTTGA 59.986 33.333 8.86 8.86 39.98 3.18
71 72 6.716628 AGAGTGGTGTAAAACAATCATCATGT 59.283 34.615 0.50 0.00 34.43 3.21
73 74 7.170965 AGAGAGTGGTGTAAAACAATCATCAT 58.829 34.615 0.50 0.00 34.43 2.45
74 75 6.533730 AGAGAGTGGTGTAAAACAATCATCA 58.466 36.000 0.50 0.00 34.43 3.07
76 77 6.772716 ACAAGAGAGTGGTGTAAAACAATCAT 59.227 34.615 0.50 0.00 34.43 2.45
77 78 6.119536 ACAAGAGAGTGGTGTAAAACAATCA 58.880 36.000 0.50 0.00 34.43 2.57
78 79 6.619801 ACAAGAGAGTGGTGTAAAACAATC 57.380 37.500 0.00 0.00 32.34 2.67
79 80 7.122055 TCAAACAAGAGAGTGGTGTAAAACAAT 59.878 33.333 0.00 0.00 0.00 2.71
90 91 3.607775 CGCATGTTCAAACAAGAGAGTGG 60.608 47.826 0.00 0.00 43.03 4.00
101 102 2.776312 TTTTACGGCGCATGTTCAAA 57.224 40.000 10.83 7.28 0.00 2.69
104 105 3.239712 GCTTTATTTTACGGCGCATGTTC 59.760 43.478 10.83 0.00 0.00 3.18
111 112 1.469308 TGGGTGCTTTATTTTACGGCG 59.531 47.619 4.80 4.80 0.00 6.46
123 124 3.617531 CGATTGTCTTCTAGTGGGTGCTT 60.618 47.826 0.00 0.00 0.00 3.91
128 129 3.868757 TCACGATTGTCTTCTAGTGGG 57.131 47.619 0.00 0.00 0.00 4.61
140 141 6.687653 TTGTTGCAAAATACATCACGATTG 57.312 33.333 0.00 0.00 0.00 2.67
159 160 3.743911 TGCGAACATCTACGATGTTTGTT 59.256 39.130 25.91 8.78 42.51 2.83
185 194 2.347731 TGTGTCGGCGTGCATTTATAA 58.652 42.857 6.85 0.00 0.00 0.98
208 217 8.833231 AAAAAGACGTTCTCAATCTCAAGATA 57.167 30.769 0.00 0.00 33.73 1.98
238 247 9.619316 TTCATGTTTTTCGACGATATTCATTTT 57.381 25.926 0.00 0.00 0.00 1.82
242 251 7.577107 TGTTTCATGTTTTTCGACGATATTCA 58.423 30.769 0.00 0.00 0.00 2.57
246 255 8.286800 AGATTTGTTTCATGTTTTTCGACGATA 58.713 29.630 0.00 0.00 0.00 2.92
249 258 6.732181 AGATTTGTTTCATGTTTTTCGACG 57.268 33.333 0.00 0.00 0.00 5.12
250 259 9.445786 TTCTAGATTTGTTTCATGTTTTTCGAC 57.554 29.630 0.00 0.00 0.00 4.20
289 298 9.793259 TCAGTTTCAAATCCTAAACTTGATACT 57.207 29.630 0.00 0.00 41.89 2.12
292 301 9.918630 CAATCAGTTTCAAATCCTAAACTTGAT 57.081 29.630 0.00 0.00 41.89 2.57
333 343 6.818644 TCTGAGCGCTATGTTTAGATTCTTTT 59.181 34.615 11.50 0.00 0.00 2.27
344 354 2.223923 GGTGAGATCTGAGCGCTATGTT 60.224 50.000 11.50 0.46 0.00 2.71
624 639 1.978580 GTCACAGGAAGGAAGGAAGGA 59.021 52.381 0.00 0.00 0.00 3.36
625 640 1.338200 CGTCACAGGAAGGAAGGAAGG 60.338 57.143 0.00 0.00 0.00 3.46
627 642 0.034896 GCGTCACAGGAAGGAAGGAA 59.965 55.000 0.00 0.00 0.00 3.36
747 762 2.477845 CTTGCTTTGGCTCGCTCG 59.522 61.111 0.00 0.00 39.59 5.03
748 763 2.177778 GCTTGCTTTGGCTCGCTC 59.822 61.111 0.00 0.00 39.59 5.03
749 764 3.368571 GGCTTGCTTTGGCTCGCT 61.369 61.111 0.00 0.00 39.59 4.93
750 765 4.766088 CGGCTTGCTTTGGCTCGC 62.766 66.667 0.00 0.00 39.59 5.03
985 1000 2.972505 CATCGGCGGGGGAATTCG 60.973 66.667 7.21 0.00 0.00 3.34
1298 1455 3.210528 GCGAGGACGACGGGAGAT 61.211 66.667 0.00 0.00 42.66 2.75
1326 1483 2.358737 CTCGCACCAAGGACCACC 60.359 66.667 0.00 0.00 0.00 4.61
1398 1555 6.708054 CACCAGGAATGTAGATCTTCCATTAC 59.292 42.308 16.72 16.72 42.83 1.89
1422 1579 2.125310 CTATTCCGCGGGCACACA 60.125 61.111 27.83 0.17 0.00 3.72
1431 1588 1.466866 GCCCGAAAACAACTATTCCGC 60.467 52.381 0.00 0.00 0.00 5.54
1546 1705 6.250819 CAAACGAATCTGTAGCAGGTAATTG 58.749 40.000 0.00 0.00 31.51 2.32
1669 1828 6.523676 AGCAAATTGTCAAATTAAACACCG 57.476 33.333 0.00 0.00 34.84 4.94
1685 1844 3.134442 ACCAACATGACCACAAGCAAATT 59.866 39.130 0.00 0.00 0.00 1.82
1686 1845 2.699846 ACCAACATGACCACAAGCAAAT 59.300 40.909 0.00 0.00 0.00 2.32
1759 1918 5.874093 TGTTGGCCAAAATTAATCCACATT 58.126 33.333 22.47 0.00 0.00 2.71
1815 1974 1.128692 GCATGCCTAACGTTCTCACAC 59.871 52.381 6.36 0.00 0.00 3.82
1875 2034 1.077501 GCAGCCCAGATAAGCCACA 60.078 57.895 0.00 0.00 0.00 4.17
1956 2115 3.304525 CCGTCTTCCATACCACTATCGAC 60.305 52.174 0.00 0.00 0.00 4.20
1958 2117 2.621998 ACCGTCTTCCATACCACTATCG 59.378 50.000 0.00 0.00 0.00 2.92
2008 2167 9.678941 TGTCGAACAAAGAGATATGACATATAC 57.321 33.333 7.96 6.08 30.82 1.47
2014 2173 7.295952 ACAATGTCGAACAAAGAGATATGAC 57.704 36.000 0.00 0.00 0.00 3.06
2122 2281 8.620416 CATAAATTACAGGCTTACAGCATAACA 58.380 33.333 0.00 0.00 44.75 2.41
2168 2327 4.124851 ACCAGTGGTTCTATTTCTAGCG 57.875 45.455 9.70 0.00 27.29 4.26
2205 2364 8.257602 ACCCAAAATATAACTTTGAAACCACT 57.742 30.769 10.69 0.00 36.12 4.00
2541 2707 7.044966 CGTTTGTTTATGAACTGAACACTTCAC 60.045 37.037 15.18 0.00 33.49 3.18
2551 2717 3.634568 TGGCCGTTTGTTTATGAACTG 57.365 42.857 0.00 0.00 36.70 3.16
2577 2743 1.156736 CCACGGTTCCATGTTCAGAC 58.843 55.000 0.00 0.00 0.00 3.51
2585 2751 2.649531 TTTCACTTCCACGGTTCCAT 57.350 45.000 0.00 0.00 0.00 3.41
2684 2850 5.298276 ACAAGAAGCAACAGATTTCCGTAAA 59.702 36.000 0.00 0.00 0.00 2.01
2697 2863 5.636837 TCAAACTGTAACACAAGAAGCAAC 58.363 37.500 0.00 0.00 0.00 4.17
2858 3024 1.854126 CTTGTGGAAGCAAAAACAGCG 59.146 47.619 0.00 0.00 37.01 5.18
3056 3222 9.072294 GCAATGTTATGGTCATAGTAAAACAAC 57.928 33.333 0.00 0.00 0.00 3.32
3216 3382 9.307121 CTACCAAGAAACATATTACAGTCTGAG 57.693 37.037 6.91 0.00 0.00 3.35
3547 3758 5.411781 ACTTTCGATGGTAGACAGAATCAC 58.588 41.667 0.00 0.00 0.00 3.06
3558 3769 3.334691 CCTCAGCAAACTTTCGATGGTA 58.665 45.455 0.00 0.00 0.00 3.25
3613 3824 6.417191 ACACATAAACACGTGTCAATATCC 57.583 37.500 23.61 0.00 0.00 2.59
3624 3835 6.804534 ACAACATTTGAACACATAAACACG 57.195 33.333 0.00 0.00 0.00 4.49
4070 4281 5.798132 AGTTGACTGAGAATAGCATGTGAA 58.202 37.500 0.00 0.00 0.00 3.18
4091 4302 8.919145 TCACCAAATTTAAAATTCAGTGGTAGT 58.081 29.630 12.49 0.00 35.98 2.73
4149 4368 7.279758 AGTTACTAAGTAGCGTCTAGTAGTTGG 59.720 40.741 0.00 0.00 0.00 3.77
4162 4381 9.777297 ACTCCTACTACATAGTTACTAAGTAGC 57.223 37.037 25.39 0.00 40.03 3.58
4199 4418 2.091852 AGAAAGAGCTACTGCACTGC 57.908 50.000 0.00 0.00 39.93 4.40
4257 4648 7.015292 ACTGTTGTTGATACCAGTTCTTCTAGA 59.985 37.037 0.00 0.00 34.64 2.43
4510 4904 6.909550 TTGGTGACTTAGGCAAACAAATAT 57.090 33.333 4.31 0.00 0.00 1.28
4515 4909 3.561143 ACATTGGTGACTTAGGCAAACA 58.439 40.909 0.00 0.00 0.00 2.83
4602 4996 5.124645 GTCTGCAGAGGAGAAAATGATGAT 58.875 41.667 18.89 0.00 0.00 2.45
4662 5056 2.166829 GTGCCCCACATGACAACATAA 58.833 47.619 0.00 0.00 35.09 1.90
4697 5094 5.054390 TCGGATTTGCCTTTTGATGTAAC 57.946 39.130 0.00 0.00 0.00 2.50
4704 5101 2.162408 GGAGACTCGGATTTGCCTTTTG 59.838 50.000 0.00 0.00 0.00 2.44
4708 5105 2.998493 AGGAGACTCGGATTTGCCT 58.002 52.632 0.00 0.00 32.90 4.75
4813 5210 4.437682 TTCGAATGGGATTGCCTATCTT 57.562 40.909 0.00 0.00 33.71 2.40
4946 5344 1.392589 CACACCAGGCAAAAGTGTCT 58.607 50.000 0.00 0.00 42.65 3.41
4980 5378 4.105486 CAGCAAGATCAAGCACATGAATG 58.895 43.478 0.00 0.00 32.06 2.67
5022 5420 3.120304 ACGAACTATCAAAAAGCTTCCGC 60.120 43.478 0.00 0.00 0.00 5.54
5128 5656 7.418840 AAATAAATCTCAAAATGCGTGCAAA 57.581 28.000 0.00 0.00 0.00 3.68
5129 5657 7.170489 TCAAAATAAATCTCAAAATGCGTGCAA 59.830 29.630 0.00 0.00 0.00 4.08
5130 5658 6.644181 TCAAAATAAATCTCAAAATGCGTGCA 59.356 30.769 0.00 0.00 0.00 4.57
5437 6085 5.047377 GCAGGGACTCCAAAACATGAAATAA 60.047 40.000 0.00 0.00 34.60 1.40
5438 6086 4.462483 GCAGGGACTCCAAAACATGAAATA 59.538 41.667 0.00 0.00 34.60 1.40
5439 6087 3.259123 GCAGGGACTCCAAAACATGAAAT 59.741 43.478 0.00 0.00 34.60 2.17
5440 6088 2.627699 GCAGGGACTCCAAAACATGAAA 59.372 45.455 0.00 0.00 34.60 2.69
5441 6089 2.238521 GCAGGGACTCCAAAACATGAA 58.761 47.619 0.00 0.00 34.60 2.57
5443 6091 1.619654 TGCAGGGACTCCAAAACATG 58.380 50.000 0.00 0.00 34.60 3.21
5444 6092 2.242043 CTTGCAGGGACTCCAAAACAT 58.758 47.619 0.00 0.00 34.60 2.71
5445 6093 1.064017 ACTTGCAGGGACTCCAAAACA 60.064 47.619 0.00 0.00 34.60 2.83
5446 6094 1.692411 ACTTGCAGGGACTCCAAAAC 58.308 50.000 0.00 0.00 34.60 2.43
5447 6095 3.806949 ATACTTGCAGGGACTCCAAAA 57.193 42.857 0.00 0.00 34.60 2.44
5525 6173 4.455877 CGAGATCAAACTAAAGGGCAAACT 59.544 41.667 0.00 0.00 0.00 2.66
5526 6174 4.215613 ACGAGATCAAACTAAAGGGCAAAC 59.784 41.667 0.00 0.00 0.00 2.93
5638 6286 2.057922 ACCTTTCCAGAAGCCTTCTCA 58.942 47.619 3.39 0.00 38.11 3.27
5662 6310 8.892723 ACAAAAATCGCAGTATATCAAATCAGA 58.107 29.630 0.00 0.00 0.00 3.27
5668 6316 9.232082 GCATTTACAAAAATCGCAGTATATCAA 57.768 29.630 0.00 0.00 32.87 2.57
5669 6317 7.860373 GGCATTTACAAAAATCGCAGTATATCA 59.140 33.333 0.00 0.00 32.87 2.15
5670 6318 8.076178 AGGCATTTACAAAAATCGCAGTATATC 58.924 33.333 0.00 0.00 32.87 1.63
5671 6319 7.862372 CAGGCATTTACAAAAATCGCAGTATAT 59.138 33.333 0.00 0.00 32.87 0.86
5672 6320 7.066404 TCAGGCATTTACAAAAATCGCAGTATA 59.934 33.333 0.00 0.00 32.87 1.47
5673 6321 6.035843 CAGGCATTTACAAAAATCGCAGTAT 58.964 36.000 0.00 0.00 32.87 2.12
5674 6322 5.182190 TCAGGCATTTACAAAAATCGCAGTA 59.818 36.000 0.00 0.00 32.87 2.74
5675 6323 4.022416 TCAGGCATTTACAAAAATCGCAGT 60.022 37.500 0.00 0.00 32.87 4.40
5676 6324 4.484236 TCAGGCATTTACAAAAATCGCAG 58.516 39.130 0.00 0.00 32.87 5.18
5677 6325 4.511617 TCAGGCATTTACAAAAATCGCA 57.488 36.364 0.00 0.00 32.87 5.10
5678 6326 5.005682 GGAATCAGGCATTTACAAAAATCGC 59.994 40.000 0.00 0.00 32.87 4.58
5679 6327 6.254157 CAGGAATCAGGCATTTACAAAAATCG 59.746 38.462 0.00 0.00 32.87 3.34
5762 6690 9.654663 AGGATTACTTGAATACTGTTACAGTTC 57.345 33.333 23.52 15.73 42.59 3.01
5833 6796 5.230726 CAGTTGTCAATTTGCAAAGACTCAC 59.769 40.000 23.95 20.43 32.41 3.51
5949 6912 3.441101 ACAAGTACTAGCCACTCCATGA 58.559 45.455 0.00 0.00 0.00 3.07
5958 6921 3.412237 TCACCCAAACAAGTACTAGCC 57.588 47.619 0.00 0.00 0.00 3.93
6017 6983 7.827701 TCGTAGAATTTTCACACATCTACTCT 58.172 34.615 8.95 0.00 40.03 3.24
6143 7111 6.458210 CATTTGGCAGGAGAGTTAAAACAAT 58.542 36.000 0.00 0.00 0.00 2.71
6382 7351 3.934579 GCATTTAGTTGCCAAAGGAATGG 59.065 43.478 8.86 0.00 43.70 3.16
6397 7366 4.573607 TGCAGACAGAATAGCAGCATTTAG 59.426 41.667 0.00 0.00 32.48 1.85
6994 7966 1.750399 CCGCACAATCTCAAGGGGG 60.750 63.158 0.00 0.00 0.00 5.40
6995 7967 1.002134 ACCGCACAATCTCAAGGGG 60.002 57.895 0.00 0.00 39.70 4.79
6996 7968 1.926511 GCACCGCACAATCTCAAGGG 61.927 60.000 0.00 0.00 0.00 3.95
6997 7969 1.236616 TGCACCGCACAATCTCAAGG 61.237 55.000 0.00 0.00 31.71 3.61
6998 7970 2.246841 TGCACCGCACAATCTCAAG 58.753 52.632 0.00 0.00 31.71 3.02
6999 7971 4.471761 TGCACCGCACAATCTCAA 57.528 50.000 0.00 0.00 31.71 3.02
7008 7980 0.457166 GTCACTATACGTGCACCGCA 60.457 55.000 12.15 0.00 43.46 5.69
7009 7981 0.179145 AGTCACTATACGTGCACCGC 60.179 55.000 12.15 0.00 43.46 5.68
7010 7982 1.131693 TGAGTCACTATACGTGCACCG 59.868 52.381 12.15 9.19 43.46 4.94
7011 7983 2.798680 CTGAGTCACTATACGTGCACC 58.201 52.381 12.15 0.00 43.46 5.01
7012 7984 2.186076 GCTGAGTCACTATACGTGCAC 58.814 52.381 6.82 6.82 43.46 4.57
7013 7985 1.202143 CGCTGAGTCACTATACGTGCA 60.202 52.381 0.00 0.00 43.46 4.57
7014 7986 1.202154 ACGCTGAGTCACTATACGTGC 60.202 52.381 0.00 0.00 43.46 5.34
7015 7987 2.441462 CACGCTGAGTCACTATACGTG 58.559 52.381 10.50 10.50 45.18 4.49
7016 7988 1.202154 GCACGCTGAGTCACTATACGT 60.202 52.381 0.00 0.00 0.00 3.57
7017 7989 1.202143 TGCACGCTGAGTCACTATACG 60.202 52.381 0.00 0.00 0.00 3.06
7018 7990 2.097629 TCTGCACGCTGAGTCACTATAC 59.902 50.000 0.00 0.00 0.00 1.47
7019 7991 2.365582 TCTGCACGCTGAGTCACTATA 58.634 47.619 0.00 0.00 0.00 1.31
7020 7992 1.177401 TCTGCACGCTGAGTCACTAT 58.823 50.000 0.00 0.00 0.00 2.12
7021 7993 0.958822 TTCTGCACGCTGAGTCACTA 59.041 50.000 0.00 0.00 0.00 2.74
7022 7994 0.104855 TTTCTGCACGCTGAGTCACT 59.895 50.000 0.00 0.00 0.00 3.41
7023 7995 1.136141 CATTTCTGCACGCTGAGTCAC 60.136 52.381 0.00 0.00 0.00 3.67
7024 7996 1.150827 CATTTCTGCACGCTGAGTCA 58.849 50.000 0.00 0.00 0.00 3.41
7025 7997 3.963622 CATTTCTGCACGCTGAGTC 57.036 52.632 0.00 0.00 0.00 3.36
7035 8007 3.120792 CACAAGGCATATGCATTTCTGC 58.879 45.455 28.07 12.02 42.92 4.26
7036 8008 4.642445 TCACAAGGCATATGCATTTCTG 57.358 40.909 28.07 22.02 42.92 3.02
7037 8009 4.038763 CCATCACAAGGCATATGCATTTCT 59.961 41.667 28.07 13.61 42.92 2.52
7038 8010 4.304110 CCATCACAAGGCATATGCATTTC 58.696 43.478 28.07 11.49 42.92 2.17
7039 8011 4.330944 CCATCACAAGGCATATGCATTT 57.669 40.909 28.07 18.42 42.92 2.32
7100 8413 6.381481 TGCTTGGCAAAGTATCTTGATATG 57.619 37.500 2.03 0.00 34.76 1.78
7164 8513 4.887655 TCATCGACAGGCAAGAGTATTCTA 59.112 41.667 0.00 0.00 31.96 2.10
7173 8522 1.817099 GCCCTCATCGACAGGCAAG 60.817 63.158 10.92 0.00 45.07 4.01
7178 8527 2.887568 GCACGCCCTCATCGACAG 60.888 66.667 0.00 0.00 0.00 3.51
7192 8566 2.807045 CAGTCGCTCACCTCGCAC 60.807 66.667 0.00 0.00 0.00 5.34
7194 8568 4.724602 TGCAGTCGCTCACCTCGC 62.725 66.667 0.00 0.00 39.64 5.03
7207 8581 4.619320 TTTGGGGGCCCTGTGCAG 62.619 66.667 24.38 0.00 43.89 4.41
7208 8582 3.481163 ATTTTGGGGGCCCTGTGCA 62.481 57.895 24.38 9.12 43.89 4.57
7209 8583 2.607442 ATTTTGGGGGCCCTGTGC 60.607 61.111 24.38 5.99 40.16 4.57
7223 8597 2.039462 GGCTGGGCCCCAAGATTT 59.961 61.111 22.27 0.00 44.06 2.17
7233 8607 2.588034 GTACGAATCGGGCTGGGC 60.588 66.667 7.80 0.00 0.00 5.36
7234 8608 2.279252 CGTACGAATCGGGCTGGG 60.279 66.667 10.44 0.00 0.00 4.45
7235 8609 1.588139 GACGTACGAATCGGGCTGG 60.588 63.158 24.41 0.00 0.00 4.85
7236 8610 0.866061 CAGACGTACGAATCGGGCTG 60.866 60.000 24.41 12.30 0.00 4.85
7249 8623 1.154207 CGAGTCGCACATCAGACGT 60.154 57.895 0.00 0.00 41.86 4.34
7268 8642 3.365265 GCAGAACAAGGCGTGGGG 61.365 66.667 5.22 0.00 0.00 4.96
7316 8690 5.615261 AGGGTTAATTCTGGATTAGGGCATA 59.385 40.000 0.00 0.00 32.06 3.14
7317 8691 4.420214 AGGGTTAATTCTGGATTAGGGCAT 59.580 41.667 0.00 0.00 32.06 4.40
7323 8697 9.847224 GAAGTGAATAGGGTTAATTCTGGATTA 57.153 33.333 0.00 0.00 34.95 1.75
7326 8700 6.346096 CGAAGTGAATAGGGTTAATTCTGGA 58.654 40.000 0.00 0.00 34.95 3.86
7327 8701 5.007724 GCGAAGTGAATAGGGTTAATTCTGG 59.992 44.000 0.00 0.00 34.95 3.86
7328 8702 5.276868 CGCGAAGTGAATAGGGTTAATTCTG 60.277 44.000 0.00 0.00 43.07 3.02
7329 8703 4.809426 CGCGAAGTGAATAGGGTTAATTCT 59.191 41.667 0.00 0.00 43.07 2.40
7330 8704 4.552184 GCGCGAAGTGAATAGGGTTAATTC 60.552 45.833 12.10 0.00 43.07 2.17
7331 8705 3.311596 GCGCGAAGTGAATAGGGTTAATT 59.688 43.478 12.10 0.00 43.07 1.40
7332 8706 2.870411 GCGCGAAGTGAATAGGGTTAAT 59.130 45.455 12.10 0.00 43.07 1.40
7333 8707 2.273557 GCGCGAAGTGAATAGGGTTAA 58.726 47.619 12.10 0.00 43.07 2.01
7334 8708 1.472026 GGCGCGAAGTGAATAGGGTTA 60.472 52.381 12.10 0.00 43.07 2.85
7335 8709 0.743345 GGCGCGAAGTGAATAGGGTT 60.743 55.000 12.10 0.00 43.07 4.11
7336 8710 1.153429 GGCGCGAAGTGAATAGGGT 60.153 57.895 12.10 0.00 43.07 4.34
7337 8711 2.237751 CGGCGCGAAGTGAATAGGG 61.238 63.158 12.10 0.00 43.07 3.53
7338 8712 2.871427 GCGGCGCGAAGTGAATAGG 61.871 63.158 19.09 0.00 43.07 2.57
7339 8713 2.621000 GCGGCGCGAAGTGAATAG 59.379 61.111 19.09 0.00 43.07 1.73
7340 8714 2.888534 GGCGGCGCGAAGTGAATA 60.889 61.111 26.95 0.00 43.07 1.75
7341 8715 4.760047 AGGCGGCGCGAAGTGAAT 62.760 61.111 26.95 0.65 43.07 2.57
7345 8719 4.980805 TTTGAGGCGGCGCGAAGT 62.981 61.111 26.95 10.27 0.00 3.01
7346 8720 3.248630 TTTTTGAGGCGGCGCGAAG 62.249 57.895 26.95 2.93 0.00 3.79
7347 8721 3.280634 TTTTTGAGGCGGCGCGAA 61.281 55.556 26.95 15.37 0.00 4.70
7348 8722 4.020378 GTTTTTGAGGCGGCGCGA 62.020 61.111 26.95 9.47 0.00 5.87
7350 8724 2.763627 ATTGGTTTTTGAGGCGGCGC 62.764 55.000 26.17 26.17 0.00 6.53
7351 8725 0.732538 GATTGGTTTTTGAGGCGGCG 60.733 55.000 0.51 0.51 0.00 6.46
7352 8726 0.316841 TGATTGGTTTTTGAGGCGGC 59.683 50.000 0.00 0.00 0.00 6.53
7353 8727 2.403259 GTTGATTGGTTTTTGAGGCGG 58.597 47.619 0.00 0.00 0.00 6.13
7354 8728 2.035832 AGGTTGATTGGTTTTTGAGGCG 59.964 45.455 0.00 0.00 0.00 5.52
7355 8729 3.653344 GAGGTTGATTGGTTTTTGAGGC 58.347 45.455 0.00 0.00 0.00 4.70
7356 8730 3.857010 GCGAGGTTGATTGGTTTTTGAGG 60.857 47.826 0.00 0.00 0.00 3.86
7357 8731 3.308530 GCGAGGTTGATTGGTTTTTGAG 58.691 45.455 0.00 0.00 0.00 3.02
7358 8732 2.287308 CGCGAGGTTGATTGGTTTTTGA 60.287 45.455 0.00 0.00 0.00 2.69
7359 8733 2.050691 CGCGAGGTTGATTGGTTTTTG 58.949 47.619 0.00 0.00 0.00 2.44
7360 8734 1.679153 ACGCGAGGTTGATTGGTTTTT 59.321 42.857 15.93 0.00 0.00 1.94
7361 8735 1.265905 GACGCGAGGTTGATTGGTTTT 59.734 47.619 15.93 0.00 0.00 2.43
7362 8736 0.872388 GACGCGAGGTTGATTGGTTT 59.128 50.000 15.93 0.00 0.00 3.27
7363 8737 1.289109 CGACGCGAGGTTGATTGGTT 61.289 55.000 15.93 0.00 31.00 3.67
7364 8738 1.736645 CGACGCGAGGTTGATTGGT 60.737 57.895 15.93 0.00 31.00 3.67
7365 8739 3.081133 CGACGCGAGGTTGATTGG 58.919 61.111 15.93 0.00 31.00 3.16
7366 8740 2.395690 GCGACGCGAGGTTGATTG 59.604 61.111 15.93 0.00 31.00 2.67
7367 8741 2.813908 GGCGACGCGAGGTTGATT 60.814 61.111 15.93 0.00 31.00 2.57
7385 8759 3.255725 TGTATTGTTCACCGAACCGATC 58.744 45.455 4.51 0.00 41.35 3.69
7386 8760 3.322211 TGTATTGTTCACCGAACCGAT 57.678 42.857 4.51 2.25 41.35 4.18
7387 8761 2.816204 TGTATTGTTCACCGAACCGA 57.184 45.000 4.51 0.00 41.35 4.69
7388 8762 3.259064 AGATGTATTGTTCACCGAACCG 58.741 45.455 4.51 0.00 41.35 4.44
7389 8763 4.092968 GTGAGATGTATTGTTCACCGAACC 59.907 45.833 4.51 0.00 41.35 3.62
7390 8764 4.201589 CGTGAGATGTATTGTTCACCGAAC 60.202 45.833 0.00 0.00 42.26 3.95
7391 8765 3.924073 CGTGAGATGTATTGTTCACCGAA 59.076 43.478 0.00 0.00 37.29 4.30
7392 8766 3.507786 CGTGAGATGTATTGTTCACCGA 58.492 45.455 0.00 0.00 37.29 4.69
7393 8767 2.029244 GCGTGAGATGTATTGTTCACCG 59.971 50.000 0.00 0.00 37.29 4.94
7394 8768 2.351726 GGCGTGAGATGTATTGTTCACC 59.648 50.000 0.00 0.00 37.29 4.02
7395 8769 2.351726 GGGCGTGAGATGTATTGTTCAC 59.648 50.000 0.00 0.00 37.24 3.18
7396 8770 2.627945 GGGCGTGAGATGTATTGTTCA 58.372 47.619 0.00 0.00 0.00 3.18
7397 8771 1.940613 GGGGCGTGAGATGTATTGTTC 59.059 52.381 0.00 0.00 0.00 3.18
7398 8772 1.742411 CGGGGCGTGAGATGTATTGTT 60.742 52.381 0.00 0.00 0.00 2.83
7399 8773 0.179084 CGGGGCGTGAGATGTATTGT 60.179 55.000 0.00 0.00 0.00 2.71
7400 8774 1.498865 GCGGGGCGTGAGATGTATTG 61.499 60.000 0.00 0.00 0.00 1.90
7401 8775 1.227556 GCGGGGCGTGAGATGTATT 60.228 57.895 0.00 0.00 0.00 1.89
7402 8776 2.421739 GCGGGGCGTGAGATGTAT 59.578 61.111 0.00 0.00 0.00 2.29
7417 8791 4.072088 GTTGCTCCGTTCACCGCG 62.072 66.667 0.00 0.00 34.38 6.46
7418 8792 4.072088 CGTTGCTCCGTTCACCGC 62.072 66.667 0.00 0.00 34.38 5.68
7419 8793 3.411351 CCGTTGCTCCGTTCACCG 61.411 66.667 0.00 0.00 0.00 4.94
7420 8794 1.161563 TTTCCGTTGCTCCGTTCACC 61.162 55.000 0.00 0.00 0.00 4.02
7421 8795 0.041576 GTTTCCGTTGCTCCGTTCAC 60.042 55.000 0.00 0.00 0.00 3.18
7422 8796 1.492319 CGTTTCCGTTGCTCCGTTCA 61.492 55.000 0.00 0.00 0.00 3.18
7423 8797 1.203313 CGTTTCCGTTGCTCCGTTC 59.797 57.895 0.00 0.00 0.00 3.95
7424 8798 2.248835 CCGTTTCCGTTGCTCCGTT 61.249 57.895 0.00 0.00 0.00 4.44
7425 8799 2.086251 TACCGTTTCCGTTGCTCCGT 62.086 55.000 0.00 0.00 0.00 4.69
7426 8800 1.349259 CTACCGTTTCCGTTGCTCCG 61.349 60.000 0.00 0.00 0.00 4.63
7427 8801 1.017701 CCTACCGTTTCCGTTGCTCC 61.018 60.000 0.00 0.00 0.00 4.70
7428 8802 1.632948 GCCTACCGTTTCCGTTGCTC 61.633 60.000 0.00 0.00 0.00 4.26
7429 8803 1.670083 GCCTACCGTTTCCGTTGCT 60.670 57.895 0.00 0.00 0.00 3.91
7430 8804 1.632948 GAGCCTACCGTTTCCGTTGC 61.633 60.000 0.00 0.00 0.00 4.17
7431 8805 0.037605 AGAGCCTACCGTTTCCGTTG 60.038 55.000 0.00 0.00 0.00 4.10
7432 8806 1.475682 CTAGAGCCTACCGTTTCCGTT 59.524 52.381 0.00 0.00 0.00 4.44
7433 8807 1.101331 CTAGAGCCTACCGTTTCCGT 58.899 55.000 0.00 0.00 0.00 4.69
7434 8808 0.384669 CCTAGAGCCTACCGTTTCCG 59.615 60.000 0.00 0.00 0.00 4.30
7435 8809 0.751452 CCCTAGAGCCTACCGTTTCC 59.249 60.000 0.00 0.00 0.00 3.13
7436 8810 1.682323 CTCCCTAGAGCCTACCGTTTC 59.318 57.143 0.00 0.00 32.13 2.78
7437 8811 1.777941 CTCCCTAGAGCCTACCGTTT 58.222 55.000 0.00 0.00 32.13 3.60
7438 8812 3.516911 CTCCCTAGAGCCTACCGTT 57.483 57.895 0.00 0.00 32.13 4.44
7447 8821 4.860881 TGGCCGGGCTCCCTAGAG 62.861 72.222 29.87 0.00 43.57 2.43
7461 8835 4.124351 TCGGTCGATGTCGGTGGC 62.124 66.667 2.25 0.00 40.29 5.01
7462 8836 2.202570 GTCGGTCGATGTCGGTGG 60.203 66.667 2.25 0.00 40.29 4.61
7463 8837 2.576053 CGTCGGTCGATGTCGGTG 60.576 66.667 2.25 0.00 42.86 4.94
7464 8838 3.807538 CCGTCGGTCGATGTCGGT 61.808 66.667 14.75 0.00 42.86 4.69
7467 8841 4.471726 ACGCCGTCGGTCGATGTC 62.472 66.667 27.00 4.24 42.86 3.06
7468 8842 4.471726 GACGCCGTCGGTCGATGT 62.472 66.667 27.00 13.13 42.86 3.06
7483 8857 4.719369 AACGTCGGCCTCAGCGAC 62.719 66.667 0.00 1.22 41.24 5.19
7484 8858 4.717629 CAACGTCGGCCTCAGCGA 62.718 66.667 0.00 0.00 41.24 4.93
7485 8859 4.717629 TCAACGTCGGCCTCAGCG 62.718 66.667 0.00 2.13 41.24 5.18
7486 8860 3.112709 GTCAACGTCGGCCTCAGC 61.113 66.667 0.00 0.00 38.76 4.26
7487 8861 2.543687 ATCGTCAACGTCGGCCTCAG 62.544 60.000 0.00 0.00 40.80 3.35
7488 8862 1.307355 TATCGTCAACGTCGGCCTCA 61.307 55.000 0.00 0.00 40.80 3.86
7489 8863 0.179156 TTATCGTCAACGTCGGCCTC 60.179 55.000 0.00 0.00 40.80 4.70
7490 8864 0.244450 TTTATCGTCAACGTCGGCCT 59.756 50.000 0.00 0.00 40.80 5.19
7491 8865 0.367887 GTTTATCGTCAACGTCGGCC 59.632 55.000 2.09 0.00 40.80 6.13
7492 8866 1.062258 TGTTTATCGTCAACGTCGGC 58.938 50.000 2.09 0.00 40.80 5.54
7493 8867 2.981805 TCTTGTTTATCGTCAACGTCGG 59.018 45.455 2.09 0.00 40.80 4.79
7494 8868 4.618338 TTCTTGTTTATCGTCAACGTCG 57.382 40.909 2.09 0.00 40.80 5.12
7495 8869 6.642917 TCTTTTCTTGTTTATCGTCAACGTC 58.357 36.000 2.09 0.00 40.80 4.34
7496 8870 6.592798 TCTTTTCTTGTTTATCGTCAACGT 57.407 33.333 2.09 0.00 40.80 3.99
7497 8871 7.510630 AGATCTTTTCTTGTTTATCGTCAACG 58.489 34.615 0.00 0.00 41.45 4.10
7498 8872 7.684489 CGAGATCTTTTCTTGTTTATCGTCAAC 59.316 37.037 0.00 0.00 33.74 3.18
7499 8873 7.621426 GCGAGATCTTTTCTTGTTTATCGTCAA 60.621 37.037 0.00 0.00 38.05 3.18
7500 8874 6.183360 GCGAGATCTTTTCTTGTTTATCGTCA 60.183 38.462 0.00 0.00 38.05 4.35
7501 8875 6.179193 GCGAGATCTTTTCTTGTTTATCGTC 58.821 40.000 0.00 0.00 38.05 4.20
7502 8876 5.063564 GGCGAGATCTTTTCTTGTTTATCGT 59.936 40.000 0.00 0.00 38.05 3.73
7503 8877 5.493735 GGCGAGATCTTTTCTTGTTTATCG 58.506 41.667 0.00 0.00 38.05 2.92
7504 8878 5.063564 ACGGCGAGATCTTTTCTTGTTTATC 59.936 40.000 16.62 0.00 38.05 1.75
7505 8879 4.935808 ACGGCGAGATCTTTTCTTGTTTAT 59.064 37.500 16.62 0.00 38.05 1.40
7506 8880 4.151689 CACGGCGAGATCTTTTCTTGTTTA 59.848 41.667 16.62 0.00 38.05 2.01
7507 8881 3.058914 CACGGCGAGATCTTTTCTTGTTT 60.059 43.478 16.62 0.00 38.05 2.83
7508 8882 2.480419 CACGGCGAGATCTTTTCTTGTT 59.520 45.455 16.62 0.00 38.05 2.83
7509 8883 2.069273 CACGGCGAGATCTTTTCTTGT 58.931 47.619 16.62 0.00 38.05 3.16
7510 8884 2.337583 TCACGGCGAGATCTTTTCTTG 58.662 47.619 16.62 0.00 38.70 3.02
7511 8885 2.743636 TCACGGCGAGATCTTTTCTT 57.256 45.000 16.62 0.00 33.74 2.52
7512 8886 2.743636 TTCACGGCGAGATCTTTTCT 57.256 45.000 16.62 0.00 37.41 2.52
7513 8887 2.474691 GCTTTCACGGCGAGATCTTTTC 60.475 50.000 16.62 0.00 0.00 2.29
7514 8888 1.464997 GCTTTCACGGCGAGATCTTTT 59.535 47.619 16.62 0.00 0.00 2.27
7515 8889 1.079503 GCTTTCACGGCGAGATCTTT 58.920 50.000 16.62 0.00 0.00 2.52
7516 8890 0.247736 AGCTTTCACGGCGAGATCTT 59.752 50.000 16.62 0.00 34.52 2.40
7517 8891 0.459237 CAGCTTTCACGGCGAGATCT 60.459 55.000 16.62 6.18 34.52 2.75
7518 8892 2.002127 CAGCTTTCACGGCGAGATC 58.998 57.895 16.62 3.73 34.52 2.75
7519 8893 4.192000 CAGCTTTCACGGCGAGAT 57.808 55.556 16.62 0.00 34.52 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.