Multiple sequence alignment - TraesCS5D01G187800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G187800 chr5D 100.000 2216 0 0 1 2216 289496073 289498288 0.000000e+00 4093.0
1 TraesCS5D01G187800 chr5D 89.721 681 58 7 1545 2216 289356809 289357486 0.000000e+00 859.0
2 TraesCS5D01G187800 chr5D 89.344 488 42 6 854 1337 289421547 289422028 2.430000e-169 604.0
3 TraesCS5D01G187800 chr1B 93.066 1471 78 14 750 2216 133124956 133126406 0.000000e+00 2130.0
4 TraesCS5D01G187800 chr1B 85.381 643 66 19 706 1337 426497521 426498146 1.860000e-180 641.0
5 TraesCS5D01G187800 chr1B 82.840 338 34 15 706 1038 426482556 426482874 4.660000e-72 281.0
6 TraesCS5D01G187800 chr1B 100.000 33 0 0 665 697 677278710 677278678 6.610000e-06 62.1
7 TraesCS5D01G187800 chr2B 92.555 1370 87 9 854 2216 127790659 127792020 0.000000e+00 1951.0
8 TraesCS5D01G187800 chr2B 91.124 1059 68 16 760 1813 135512190 135511153 0.000000e+00 1411.0
9 TraesCS5D01G187800 chr2B 96.835 474 14 1 1744 2216 135510806 135510333 0.000000e+00 791.0
10 TraesCS5D01G187800 chr2B 85.625 480 55 11 1 470 11392109 11391634 1.980000e-135 492.0
11 TraesCS5D01G187800 chr2B 92.276 246 18 1 1554 1798 182134920 182135165 4.530000e-92 348.0
12 TraesCS5D01G187800 chr2B 88.532 218 25 0 1843 2060 182135177 182135394 4.690000e-67 265.0
13 TraesCS5D01G187800 chr7A 89.545 1473 121 28 757 2216 627234430 627235882 0.000000e+00 1836.0
14 TraesCS5D01G187800 chr7A 90.564 869 69 9 994 1857 627014350 627015210 0.000000e+00 1138.0
15 TraesCS5D01G187800 chr7A 90.564 869 69 9 994 1857 627052026 627052886 0.000000e+00 1138.0
16 TraesCS5D01G187800 chr7A 87.127 637 59 10 706 1335 627045774 627046394 0.000000e+00 701.0
17 TraesCS5D01G187800 chr7A 86.185 637 64 12 706 1335 627119962 627120581 0.000000e+00 667.0
18 TraesCS5D01G187800 chr7A 86.252 531 40 7 499 1025 627051525 627052026 1.500000e-151 545.0
19 TraesCS5D01G187800 chr7A 85.526 532 42 9 499 1025 627013849 627014350 7.010000e-145 523.0
20 TraesCS5D01G187800 chr7A 86.222 225 23 4 854 1075 627009122 627009341 1.020000e-58 237.0
21 TraesCS5D01G187800 chr7B 96.520 661 19 3 1554 2213 588879674 588880331 0.000000e+00 1090.0
22 TraesCS5D01G187800 chr7B 88.248 468 45 7 1 466 695712691 695712232 3.220000e-153 551.0
23 TraesCS5D01G187800 chr7B 83.136 338 33 13 706 1038 589734846 589734528 1.000000e-73 287.0
24 TraesCS5D01G187800 chr2A 92.505 467 31 3 1 466 752704940 752705403 0.000000e+00 665.0
25 TraesCS5D01G187800 chr2A 89.979 469 39 8 1 466 515479609 515480072 1.130000e-167 599.0
26 TraesCS5D01G187800 chr2A 85.124 484 49 17 1 469 722144171 722143696 7.160000e-130 473.0
27 TraesCS5D01G187800 chr2A 100.000 35 0 0 665 699 491531074 491531108 5.110000e-07 65.8
28 TraesCS5D01G187800 chr5A 91.295 471 31 9 1 467 702764052 702764516 3.100000e-178 634.0
29 TraesCS5D01G187800 chr5A 85.835 473 50 11 1 466 708168097 708167635 9.200000e-134 486.0
30 TraesCS5D01G187800 chr3B 90.524 401 29 4 1 395 759817176 759817573 2.520000e-144 521.0
31 TraesCS5D01G187800 chr3B 77.901 181 30 3 468 647 101811705 101811534 1.080000e-18 104.0
32 TraesCS5D01G187800 chr3B 84.270 89 13 1 477 565 655416574 655416487 3.920000e-13 86.1
33 TraesCS5D01G187800 chr4A 86.221 479 45 15 1 466 610271268 610270798 1.180000e-137 499.0
34 TraesCS5D01G187800 chr6A 93.590 78 3 2 698 773 107263915 107263838 5.000000e-22 115.0
35 TraesCS5D01G187800 chr3D 79.290 169 29 2 479 641 12127419 12127587 1.800000e-21 113.0
36 TraesCS5D01G187800 chr3D 97.222 36 1 0 663 698 382115230 382115195 6.610000e-06 62.1
37 TraesCS5D01G187800 chr6B 85.714 77 10 1 570 645 702951638 702951562 1.820000e-11 80.5
38 TraesCS5D01G187800 chr6B 97.368 38 0 1 662 699 492859997 492860033 1.840000e-06 63.9
39 TraesCS5D01G187800 chr4B 97.222 36 1 0 663 698 606549909 606549874 6.610000e-06 62.1
40 TraesCS5D01G187800 chr6D 97.143 35 1 0 665 699 372425169 372425203 2.380000e-05 60.2
41 TraesCS5D01G187800 chr2D 100.000 32 0 0 666 697 603136188 603136157 2.380000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G187800 chr5D 289496073 289498288 2215 False 4093.0 4093 100.0000 1 2216 1 chr5D.!!$F3 2215
1 TraesCS5D01G187800 chr5D 289356809 289357486 677 False 859.0 859 89.7210 1545 2216 1 chr5D.!!$F1 671
2 TraesCS5D01G187800 chr1B 133124956 133126406 1450 False 2130.0 2130 93.0660 750 2216 1 chr1B.!!$F1 1466
3 TraesCS5D01G187800 chr1B 426497521 426498146 625 False 641.0 641 85.3810 706 1337 1 chr1B.!!$F3 631
4 TraesCS5D01G187800 chr2B 127790659 127792020 1361 False 1951.0 1951 92.5550 854 2216 1 chr2B.!!$F1 1362
5 TraesCS5D01G187800 chr2B 135510333 135512190 1857 True 1101.0 1411 93.9795 760 2216 2 chr2B.!!$R2 1456
6 TraesCS5D01G187800 chr7A 627234430 627235882 1452 False 1836.0 1836 89.5450 757 2216 1 chr7A.!!$F4 1459
7 TraesCS5D01G187800 chr7A 627051525 627052886 1361 False 841.5 1138 88.4080 499 1857 2 chr7A.!!$F6 1358
8 TraesCS5D01G187800 chr7A 627013849 627015210 1361 False 830.5 1138 88.0450 499 1857 2 chr7A.!!$F5 1358
9 TraesCS5D01G187800 chr7A 627045774 627046394 620 False 701.0 701 87.1270 706 1335 1 chr7A.!!$F2 629
10 TraesCS5D01G187800 chr7A 627119962 627120581 619 False 667.0 667 86.1850 706 1335 1 chr7A.!!$F3 629
11 TraesCS5D01G187800 chr7B 588879674 588880331 657 False 1090.0 1090 96.5200 1554 2213 1 chr7B.!!$F1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 495 0.104304 ACAGTCTTCGCCGTTGAACT 59.896 50.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 1740 2.88089 GACAGATGTGTTCAGCTTTGGT 59.119 45.455 0.0 0.0 38.31 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.502177 CATGTATTTCATGCAAGAACAAGAC 57.498 36.000 3.39 0.00 45.69 3.01
44 45 6.631971 TGTATTTCATGCAAGAACAAGACA 57.368 33.333 3.39 1.96 0.00 3.41
45 46 7.218228 TGTATTTCATGCAAGAACAAGACAT 57.782 32.000 3.39 0.00 0.00 3.06
46 47 8.334263 TGTATTTCATGCAAGAACAAGACATA 57.666 30.769 3.39 0.00 0.00 2.29
47 48 8.959548 TGTATTTCATGCAAGAACAAGACATAT 58.040 29.630 3.39 0.00 0.00 1.78
50 51 8.791327 TTTCATGCAAGAACAAGACATATAGA 57.209 30.769 3.39 0.00 0.00 1.98
51 52 8.429493 TTCATGCAAGAACAAGACATATAGAG 57.571 34.615 0.00 0.00 0.00 2.43
52 53 7.785033 TCATGCAAGAACAAGACATATAGAGA 58.215 34.615 0.00 0.00 0.00 3.10
53 54 8.427276 TCATGCAAGAACAAGACATATAGAGAT 58.573 33.333 0.00 0.00 0.00 2.75
54 55 9.053840 CATGCAAGAACAAGACATATAGAGATT 57.946 33.333 0.00 0.00 0.00 2.40
55 56 8.429493 TGCAAGAACAAGACATATAGAGATTG 57.571 34.615 0.00 0.00 0.00 2.67
56 57 8.260114 TGCAAGAACAAGACATATAGAGATTGA 58.740 33.333 0.00 0.00 0.00 2.57
57 58 8.547069 GCAAGAACAAGACATATAGAGATTGAC 58.453 37.037 0.00 0.00 0.00 3.18
58 59 9.814899 CAAGAACAAGACATATAGAGATTGACT 57.185 33.333 0.00 0.00 0.00 3.41
71 72 8.864069 ATAGAGATTGACTATCACTTTGTTCG 57.136 34.615 2.62 0.00 35.97 3.95
72 73 6.692486 AGAGATTGACTATCACTTTGTTCGT 58.308 36.000 0.00 0.00 35.59 3.85
73 74 6.587990 AGAGATTGACTATCACTTTGTTCGTG 59.412 38.462 0.00 0.00 35.59 4.35
74 75 6.455647 AGATTGACTATCACTTTGTTCGTGA 58.544 36.000 0.00 0.00 44.59 4.35
75 76 6.929049 AGATTGACTATCACTTTGTTCGTGAA 59.071 34.615 0.00 0.00 43.80 3.18
76 77 6.912203 TTGACTATCACTTTGTTCGTGAAA 57.088 33.333 0.00 0.00 43.80 2.69
77 78 6.525121 TGACTATCACTTTGTTCGTGAAAG 57.475 37.500 0.00 0.00 43.80 2.62
78 79 6.277605 TGACTATCACTTTGTTCGTGAAAGA 58.722 36.000 0.00 0.00 43.80 2.52
79 80 6.420903 TGACTATCACTTTGTTCGTGAAAGAG 59.579 38.462 0.00 0.00 43.80 2.85
80 81 6.281405 ACTATCACTTTGTTCGTGAAAGAGT 58.719 36.000 0.00 0.00 43.80 3.24
81 82 7.431249 ACTATCACTTTGTTCGTGAAAGAGTA 58.569 34.615 0.00 0.00 43.80 2.59
82 83 6.771188 ATCACTTTGTTCGTGAAAGAGTAG 57.229 37.500 0.00 0.00 43.80 2.57
83 84 4.506654 TCACTTTGTTCGTGAAAGAGTAGC 59.493 41.667 0.00 0.00 38.36 3.58
84 85 4.270084 CACTTTGTTCGTGAAAGAGTAGCA 59.730 41.667 0.00 0.00 34.94 3.49
85 86 4.270325 ACTTTGTTCGTGAAAGAGTAGCAC 59.730 41.667 0.00 0.00 34.94 4.40
86 87 3.446310 TGTTCGTGAAAGAGTAGCACA 57.554 42.857 0.00 0.00 32.96 4.57
87 88 3.381045 TGTTCGTGAAAGAGTAGCACAG 58.619 45.455 0.00 0.00 32.96 3.66
88 89 3.067601 TGTTCGTGAAAGAGTAGCACAGA 59.932 43.478 0.00 0.00 32.96 3.41
89 90 4.049186 GTTCGTGAAAGAGTAGCACAGAA 58.951 43.478 0.00 0.00 32.96 3.02
90 91 4.316205 TCGTGAAAGAGTAGCACAGAAA 57.684 40.909 0.00 0.00 32.96 2.52
91 92 4.049186 TCGTGAAAGAGTAGCACAGAAAC 58.951 43.478 0.00 0.00 32.96 2.78
92 93 3.184581 CGTGAAAGAGTAGCACAGAAACC 59.815 47.826 0.00 0.00 32.96 3.27
93 94 3.184581 GTGAAAGAGTAGCACAGAAACCG 59.815 47.826 0.00 0.00 32.96 4.44
94 95 1.797025 AAGAGTAGCACAGAAACCGC 58.203 50.000 0.00 0.00 0.00 5.68
95 96 0.969894 AGAGTAGCACAGAAACCGCT 59.030 50.000 0.00 0.00 39.80 5.52
96 97 2.168496 AGAGTAGCACAGAAACCGCTA 58.832 47.619 0.00 0.00 37.20 4.26
97 98 2.164624 AGAGTAGCACAGAAACCGCTAG 59.835 50.000 0.00 0.00 38.84 3.42
98 99 2.163815 GAGTAGCACAGAAACCGCTAGA 59.836 50.000 0.00 0.00 38.84 2.43
99 100 2.561419 AGTAGCACAGAAACCGCTAGAA 59.439 45.455 0.00 0.00 38.84 2.10
100 101 2.543777 AGCACAGAAACCGCTAGAAA 57.456 45.000 0.00 0.00 33.25 2.52
101 102 3.059352 AGCACAGAAACCGCTAGAAAT 57.941 42.857 0.00 0.00 33.25 2.17
102 103 4.202245 AGCACAGAAACCGCTAGAAATA 57.798 40.909 0.00 0.00 33.25 1.40
103 104 3.933332 AGCACAGAAACCGCTAGAAATAC 59.067 43.478 0.00 0.00 33.25 1.89
104 105 3.682858 GCACAGAAACCGCTAGAAATACA 59.317 43.478 0.00 0.00 0.00 2.29
105 106 4.201724 GCACAGAAACCGCTAGAAATACAG 60.202 45.833 0.00 0.00 0.00 2.74
106 107 4.929808 CACAGAAACCGCTAGAAATACAGT 59.070 41.667 0.00 0.00 0.00 3.55
107 108 5.408604 CACAGAAACCGCTAGAAATACAGTT 59.591 40.000 0.00 0.00 0.00 3.16
108 109 5.638234 ACAGAAACCGCTAGAAATACAGTTC 59.362 40.000 0.00 0.00 0.00 3.01
109 110 5.637810 CAGAAACCGCTAGAAATACAGTTCA 59.362 40.000 0.00 0.00 0.00 3.18
110 111 6.313905 CAGAAACCGCTAGAAATACAGTTCAT 59.686 38.462 0.00 0.00 0.00 2.57
111 112 6.879458 AGAAACCGCTAGAAATACAGTTCATT 59.121 34.615 0.00 0.00 0.00 2.57
112 113 6.663944 AACCGCTAGAAATACAGTTCATTC 57.336 37.500 0.00 0.00 0.00 2.67
113 114 5.116882 ACCGCTAGAAATACAGTTCATTCC 58.883 41.667 0.00 0.00 0.00 3.01
114 115 5.116180 CCGCTAGAAATACAGTTCATTCCA 58.884 41.667 0.00 0.00 0.00 3.53
115 116 5.584649 CCGCTAGAAATACAGTTCATTCCAA 59.415 40.000 0.00 0.00 0.00 3.53
116 117 6.456988 CCGCTAGAAATACAGTTCATTCCAAC 60.457 42.308 0.00 0.00 0.00 3.77
117 118 6.092122 CGCTAGAAATACAGTTCATTCCAACA 59.908 38.462 0.00 0.00 0.00 3.33
118 119 7.467623 GCTAGAAATACAGTTCATTCCAACAG 58.532 38.462 0.00 0.00 0.00 3.16
119 120 6.824305 AGAAATACAGTTCATTCCAACAGG 57.176 37.500 0.00 0.00 0.00 4.00
120 121 6.542821 AGAAATACAGTTCATTCCAACAGGA 58.457 36.000 0.00 0.00 0.00 3.86
121 122 6.656693 AGAAATACAGTTCATTCCAACAGGAG 59.343 38.462 0.00 0.00 31.86 3.69
122 123 5.762179 ATACAGTTCATTCCAACAGGAGA 57.238 39.130 0.00 0.00 31.86 3.71
123 124 4.647564 ACAGTTCATTCCAACAGGAGAT 57.352 40.909 0.00 0.00 31.86 2.75
124 125 4.583871 ACAGTTCATTCCAACAGGAGATC 58.416 43.478 0.00 0.00 31.86 2.75
125 126 4.042062 ACAGTTCATTCCAACAGGAGATCA 59.958 41.667 0.00 0.00 31.86 2.92
126 127 5.005740 CAGTTCATTCCAACAGGAGATCAA 58.994 41.667 0.00 0.00 31.86 2.57
127 128 5.123502 CAGTTCATTCCAACAGGAGATCAAG 59.876 44.000 0.00 0.00 31.86 3.02
128 129 4.916041 TCATTCCAACAGGAGATCAAGT 57.084 40.909 0.00 0.00 31.86 3.16
129 130 5.246981 TCATTCCAACAGGAGATCAAGTT 57.753 39.130 0.00 0.00 31.86 2.66
130 131 5.005740 TCATTCCAACAGGAGATCAAGTTG 58.994 41.667 0.00 0.00 40.63 3.16
131 132 2.783135 TCCAACAGGAGATCAAGTTGC 58.217 47.619 0.00 0.00 39.86 4.17
132 133 2.373169 TCCAACAGGAGATCAAGTTGCT 59.627 45.455 0.00 0.00 39.86 3.91
133 134 2.486982 CCAACAGGAGATCAAGTTGCTG 59.513 50.000 0.00 2.04 39.86 4.41
134 135 3.405831 CAACAGGAGATCAAGTTGCTGA 58.594 45.455 12.60 0.00 36.41 4.26
135 136 3.996921 ACAGGAGATCAAGTTGCTGAT 57.003 42.857 12.60 0.00 38.79 2.90
136 137 3.607741 ACAGGAGATCAAGTTGCTGATG 58.392 45.455 12.60 3.67 36.15 3.07
137 138 2.943690 CAGGAGATCAAGTTGCTGATGG 59.056 50.000 0.00 0.00 36.15 3.51
138 139 1.674962 GGAGATCAAGTTGCTGATGGC 59.325 52.381 0.00 0.00 36.15 4.40
139 140 2.641305 GAGATCAAGTTGCTGATGGCT 58.359 47.619 0.00 0.00 42.39 4.75
140 141 3.015327 GAGATCAAGTTGCTGATGGCTT 58.985 45.455 0.00 0.00 42.39 4.35
141 142 3.015327 AGATCAAGTTGCTGATGGCTTC 58.985 45.455 0.00 0.00 42.39 3.86
142 143 2.275134 TCAAGTTGCTGATGGCTTCA 57.725 45.000 0.00 2.86 42.39 3.02
143 144 1.881973 TCAAGTTGCTGATGGCTTCAC 59.118 47.619 0.00 0.00 42.39 3.18
144 145 1.884579 CAAGTTGCTGATGGCTTCACT 59.115 47.619 0.00 0.00 42.39 3.41
145 146 3.076621 CAAGTTGCTGATGGCTTCACTA 58.923 45.455 0.00 0.00 42.39 2.74
146 147 3.423539 AGTTGCTGATGGCTTCACTAA 57.576 42.857 0.00 0.00 42.39 2.24
147 148 3.341823 AGTTGCTGATGGCTTCACTAAG 58.658 45.455 0.00 0.00 42.39 2.18
162 163 7.129109 CTTCACTAAGCCTTTACAAATTCGA 57.871 36.000 0.00 0.00 0.00 3.71
163 164 6.476243 TCACTAAGCCTTTACAAATTCGAC 57.524 37.500 0.00 0.00 0.00 4.20
164 165 5.992829 TCACTAAGCCTTTACAAATTCGACA 59.007 36.000 0.00 0.00 0.00 4.35
165 166 6.147164 TCACTAAGCCTTTACAAATTCGACAG 59.853 38.462 0.00 0.00 0.00 3.51
166 167 5.995897 ACTAAGCCTTTACAAATTCGACAGT 59.004 36.000 0.00 0.00 0.00 3.55
167 168 5.767816 AAGCCTTTACAAATTCGACAGTT 57.232 34.783 0.00 0.00 0.00 3.16
168 169 5.358298 AGCCTTTACAAATTCGACAGTTC 57.642 39.130 0.00 0.00 0.00 3.01
169 170 4.215613 AGCCTTTACAAATTCGACAGTTCC 59.784 41.667 0.00 0.00 0.00 3.62
170 171 4.023536 GCCTTTACAAATTCGACAGTTCCA 60.024 41.667 0.00 0.00 0.00 3.53
171 172 5.506649 GCCTTTACAAATTCGACAGTTCCAA 60.507 40.000 0.00 0.00 0.00 3.53
172 173 6.142817 CCTTTACAAATTCGACAGTTCCAAG 58.857 40.000 0.00 0.00 0.00 3.61
173 174 3.626028 ACAAATTCGACAGTTCCAAGC 57.374 42.857 0.00 0.00 0.00 4.01
174 175 2.293399 ACAAATTCGACAGTTCCAAGCC 59.707 45.455 0.00 0.00 0.00 4.35
175 176 2.554032 CAAATTCGACAGTTCCAAGCCT 59.446 45.455 0.00 0.00 0.00 4.58
176 177 2.568623 ATTCGACAGTTCCAAGCCTT 57.431 45.000 0.00 0.00 0.00 4.35
177 178 1.878953 TTCGACAGTTCCAAGCCTTC 58.121 50.000 0.00 0.00 0.00 3.46
178 179 0.756294 TCGACAGTTCCAAGCCTTCA 59.244 50.000 0.00 0.00 0.00 3.02
179 180 1.140052 TCGACAGTTCCAAGCCTTCAA 59.860 47.619 0.00 0.00 0.00 2.69
180 181 1.532868 CGACAGTTCCAAGCCTTCAAG 59.467 52.381 0.00 0.00 0.00 3.02
181 182 2.806745 CGACAGTTCCAAGCCTTCAAGA 60.807 50.000 0.00 0.00 0.00 3.02
182 183 3.214328 GACAGTTCCAAGCCTTCAAGAA 58.786 45.455 0.00 0.00 0.00 2.52
183 184 2.952310 ACAGTTCCAAGCCTTCAAGAAC 59.048 45.455 4.22 4.22 37.65 3.01
184 185 2.951642 CAGTTCCAAGCCTTCAAGAACA 59.048 45.455 11.84 0.00 39.39 3.18
185 186 3.381272 CAGTTCCAAGCCTTCAAGAACAA 59.619 43.478 11.84 0.00 39.39 2.83
186 187 4.038402 CAGTTCCAAGCCTTCAAGAACAAT 59.962 41.667 11.84 0.00 39.39 2.71
187 188 4.279420 AGTTCCAAGCCTTCAAGAACAATC 59.721 41.667 11.84 0.00 39.39 2.67
188 189 4.104383 TCCAAGCCTTCAAGAACAATCT 57.896 40.909 0.00 0.00 37.57 2.40
189 190 3.822735 TCCAAGCCTTCAAGAACAATCTG 59.177 43.478 0.00 0.00 35.59 2.90
190 191 3.822735 CCAAGCCTTCAAGAACAATCTGA 59.177 43.478 0.00 0.00 35.59 3.27
191 192 4.279169 CCAAGCCTTCAAGAACAATCTGAA 59.721 41.667 0.00 0.00 35.59 3.02
192 193 5.218139 CAAGCCTTCAAGAACAATCTGAAC 58.782 41.667 0.00 0.00 35.59 3.18
193 194 4.464008 AGCCTTCAAGAACAATCTGAACA 58.536 39.130 0.00 0.00 35.59 3.18
194 195 5.075493 AGCCTTCAAGAACAATCTGAACAT 58.925 37.500 0.00 0.00 35.59 2.71
195 196 5.537674 AGCCTTCAAGAACAATCTGAACATT 59.462 36.000 0.00 0.00 35.59 2.71
196 197 5.632347 GCCTTCAAGAACAATCTGAACATTG 59.368 40.000 0.00 0.00 39.35 2.82
197 198 6.515531 GCCTTCAAGAACAATCTGAACATTGA 60.516 38.462 0.25 0.00 37.24 2.57
198 199 6.860023 CCTTCAAGAACAATCTGAACATTGAC 59.140 38.462 0.25 0.00 37.24 3.18
199 200 6.940831 TCAAGAACAATCTGAACATTGACA 57.059 33.333 0.25 0.00 37.24 3.58
200 201 7.514784 TCAAGAACAATCTGAACATTGACAT 57.485 32.000 0.25 0.00 37.24 3.06
201 202 7.364970 TCAAGAACAATCTGAACATTGACATG 58.635 34.615 0.25 0.00 37.24 3.21
202 203 6.889301 AGAACAATCTGAACATTGACATGT 57.111 33.333 0.00 0.00 38.85 3.21
203 204 7.650504 CAAGAACAATCTGAACATTGACATGTT 59.349 33.333 0.00 0.14 44.71 2.71
204 205 8.849168 AAGAACAATCTGAACATTGACATGTTA 58.151 29.630 0.00 0.00 43.32 2.41
214 215 6.764308 ACATTGACATGTTAAGATTGAGGG 57.236 37.500 9.11 0.00 41.16 4.30
215 216 6.484288 ACATTGACATGTTAAGATTGAGGGA 58.516 36.000 9.11 0.00 41.16 4.20
216 217 6.600822 ACATTGACATGTTAAGATTGAGGGAG 59.399 38.462 9.11 0.00 41.16 4.30
217 218 5.102953 TGACATGTTAAGATTGAGGGAGG 57.897 43.478 0.00 0.00 0.00 4.30
218 219 4.782691 TGACATGTTAAGATTGAGGGAGGA 59.217 41.667 0.00 0.00 0.00 3.71
219 220 5.429762 TGACATGTTAAGATTGAGGGAGGAT 59.570 40.000 0.00 0.00 0.00 3.24
220 221 5.688807 ACATGTTAAGATTGAGGGAGGATG 58.311 41.667 0.00 0.00 0.00 3.51
221 222 5.192522 ACATGTTAAGATTGAGGGAGGATGT 59.807 40.000 0.00 0.00 0.00 3.06
222 223 5.779241 TGTTAAGATTGAGGGAGGATGTT 57.221 39.130 0.00 0.00 0.00 2.71
223 224 6.884472 TGTTAAGATTGAGGGAGGATGTTA 57.116 37.500 0.00 0.00 0.00 2.41
224 225 7.265599 TGTTAAGATTGAGGGAGGATGTTAA 57.734 36.000 0.00 0.00 0.00 2.01
225 226 7.695055 TGTTAAGATTGAGGGAGGATGTTAAA 58.305 34.615 0.00 0.00 0.00 1.52
226 227 7.610305 TGTTAAGATTGAGGGAGGATGTTAAAC 59.390 37.037 0.00 0.00 0.00 2.01
227 228 4.770795 AGATTGAGGGAGGATGTTAAACG 58.229 43.478 0.00 0.00 0.00 3.60
228 229 4.469945 AGATTGAGGGAGGATGTTAAACGA 59.530 41.667 0.00 0.00 0.00 3.85
229 230 4.837093 TTGAGGGAGGATGTTAAACGAT 57.163 40.909 0.00 0.00 0.00 3.73
230 231 5.943349 TTGAGGGAGGATGTTAAACGATA 57.057 39.130 0.00 0.00 0.00 2.92
231 232 5.531122 TGAGGGAGGATGTTAAACGATAG 57.469 43.478 0.00 0.00 46.19 2.08
232 233 4.344102 TGAGGGAGGATGTTAAACGATAGG 59.656 45.833 0.00 0.00 43.77 2.57
233 234 3.071167 AGGGAGGATGTTAAACGATAGGC 59.929 47.826 0.00 0.00 43.77 3.93
234 235 3.071167 GGGAGGATGTTAAACGATAGGCT 59.929 47.826 0.00 0.00 43.77 4.58
235 236 4.444449 GGGAGGATGTTAAACGATAGGCTT 60.444 45.833 0.00 0.00 43.77 4.35
236 237 4.511826 GGAGGATGTTAAACGATAGGCTTG 59.488 45.833 0.00 0.00 43.77 4.01
237 238 5.099042 AGGATGTTAAACGATAGGCTTGT 57.901 39.130 0.00 0.00 43.77 3.16
238 239 6.229936 AGGATGTTAAACGATAGGCTTGTA 57.770 37.500 0.00 0.00 43.77 2.41
239 240 6.281405 AGGATGTTAAACGATAGGCTTGTAG 58.719 40.000 0.00 0.00 43.77 2.74
240 241 6.097839 AGGATGTTAAACGATAGGCTTGTAGA 59.902 38.462 0.00 0.00 43.77 2.59
241 242 6.421202 GGATGTTAAACGATAGGCTTGTAGAG 59.579 42.308 0.00 0.00 43.77 2.43
242 243 6.519679 TGTTAAACGATAGGCTTGTAGAGA 57.480 37.500 0.00 0.00 43.77 3.10
243 244 6.927416 TGTTAAACGATAGGCTTGTAGAGAA 58.073 36.000 0.00 0.00 43.77 2.87
244 245 7.553334 TGTTAAACGATAGGCTTGTAGAGAAT 58.447 34.615 0.00 0.00 43.77 2.40
245 246 7.491372 TGTTAAACGATAGGCTTGTAGAGAATG 59.509 37.037 0.00 0.00 43.77 2.67
246 247 5.599999 AACGATAGGCTTGTAGAGAATGT 57.400 39.130 0.00 0.00 43.77 2.71
247 248 6.710597 AACGATAGGCTTGTAGAGAATGTA 57.289 37.500 0.00 0.00 43.77 2.29
248 249 6.902771 ACGATAGGCTTGTAGAGAATGTAT 57.097 37.500 0.00 0.00 43.77 2.29
249 250 7.997773 ACGATAGGCTTGTAGAGAATGTATA 57.002 36.000 0.00 0.00 43.77 1.47
250 251 8.046294 ACGATAGGCTTGTAGAGAATGTATAG 57.954 38.462 0.00 0.00 43.77 1.31
251 252 7.121463 ACGATAGGCTTGTAGAGAATGTATAGG 59.879 40.741 0.00 0.00 43.77 2.57
252 253 7.337184 CGATAGGCTTGTAGAGAATGTATAGGA 59.663 40.741 0.00 0.00 0.00 2.94
253 254 9.196139 GATAGGCTTGTAGAGAATGTATAGGAT 57.804 37.037 0.00 0.00 0.00 3.24
255 256 8.588290 AGGCTTGTAGAGAATGTATAGGATAG 57.412 38.462 0.00 0.00 0.00 2.08
256 257 8.394822 AGGCTTGTAGAGAATGTATAGGATAGA 58.605 37.037 0.00 0.00 0.00 1.98
257 258 9.026121 GGCTTGTAGAGAATGTATAGGATAGAA 57.974 37.037 0.00 0.00 0.00 2.10
270 271 9.074576 TGTATAGGATAGAAATACGTGACATGT 57.925 33.333 0.00 0.00 0.00 3.21
271 272 9.909644 GTATAGGATAGAAATACGTGACATGTT 57.090 33.333 5.45 0.00 0.00 2.71
272 273 8.818141 ATAGGATAGAAATACGTGACATGTTG 57.182 34.615 5.45 0.00 0.00 3.33
273 274 6.640518 AGGATAGAAATACGTGACATGTTGT 58.359 36.000 5.45 2.02 0.00 3.32
289 290 8.126871 GACATGTTGTCACGTATGTATATTGT 57.873 34.615 0.00 0.00 46.22 2.71
290 291 9.240159 GACATGTTGTCACGTATGTATATTGTA 57.760 33.333 0.00 0.00 46.22 2.41
291 292 9.589111 ACATGTTGTCACGTATGTATATTGTAA 57.411 29.630 0.00 0.00 32.41 2.41
292 293 9.843874 CATGTTGTCACGTATGTATATTGTAAC 57.156 33.333 0.00 0.00 0.00 2.50
293 294 8.106467 TGTTGTCACGTATGTATATTGTAACG 57.894 34.615 0.00 0.00 36.48 3.18
294 295 6.736807 TGTCACGTATGTATATTGTAACGC 57.263 37.500 0.00 0.00 33.87 4.84
295 296 6.264088 TGTCACGTATGTATATTGTAACGCA 58.736 36.000 0.00 0.00 33.87 5.24
296 297 6.919115 TGTCACGTATGTATATTGTAACGCAT 59.081 34.615 0.00 0.00 33.87 4.73
297 298 8.074972 TGTCACGTATGTATATTGTAACGCATA 58.925 33.333 0.00 0.00 33.87 3.14
298 299 8.360855 GTCACGTATGTATATTGTAACGCATAC 58.639 37.037 0.00 0.00 36.82 2.39
299 300 8.074972 TCACGTATGTATATTGTAACGCATACA 58.925 33.333 11.39 0.00 42.75 2.29
300 301 8.856247 CACGTATGTATATTGTAACGCATACAT 58.144 33.333 10.07 10.07 43.84 2.29
301 302 8.856247 ACGTATGTATATTGTAACGCATACATG 58.144 33.333 13.61 0.00 43.84 3.21
302 303 8.856247 CGTATGTATATTGTAACGCATACATGT 58.144 33.333 2.69 2.69 43.84 3.21
308 309 6.785488 ATTGTAACGCATACATGTATCTGG 57.215 37.500 15.60 9.97 43.84 3.86
309 310 5.270893 TGTAACGCATACATGTATCTGGT 57.729 39.130 15.60 11.74 39.60 4.00
310 311 5.047188 TGTAACGCATACATGTATCTGGTG 58.953 41.667 15.60 13.25 39.60 4.17
311 312 2.483876 ACGCATACATGTATCTGGTGC 58.516 47.619 15.60 15.47 0.00 5.01
312 313 1.456923 CGCATACATGTATCTGGTGCG 59.543 52.381 26.86 26.86 43.55 5.34
313 314 1.800586 GCATACATGTATCTGGTGCGG 59.199 52.381 15.60 3.56 0.00 5.69
314 315 1.800586 CATACATGTATCTGGTGCGGC 59.199 52.381 15.60 0.00 0.00 6.53
315 316 0.827368 TACATGTATCTGGTGCGGCA 59.173 50.000 0.08 0.00 0.00 5.69
316 317 0.462581 ACATGTATCTGGTGCGGCAG 60.463 55.000 1.18 0.00 0.00 4.85
317 318 1.146930 ATGTATCTGGTGCGGCAGG 59.853 57.895 1.18 0.00 0.00 4.85
318 319 1.626356 ATGTATCTGGTGCGGCAGGT 61.626 55.000 1.18 0.00 0.00 4.00
319 320 1.078426 GTATCTGGTGCGGCAGGTT 60.078 57.895 1.18 0.00 0.00 3.50
320 321 1.078497 TATCTGGTGCGGCAGGTTG 60.078 57.895 1.18 0.00 0.00 3.77
321 322 1.836999 TATCTGGTGCGGCAGGTTGT 61.837 55.000 1.18 0.00 0.00 3.32
322 323 2.697147 ATCTGGTGCGGCAGGTTGTT 62.697 55.000 1.18 0.00 0.00 2.83
323 324 1.599518 CTGGTGCGGCAGGTTGTTA 60.600 57.895 1.18 0.00 0.00 2.41
324 325 1.577328 CTGGTGCGGCAGGTTGTTAG 61.577 60.000 1.18 0.00 0.00 2.34
325 326 2.561373 GTGCGGCAGGTTGTTAGC 59.439 61.111 1.18 0.00 0.00 3.09
326 327 1.966451 GTGCGGCAGGTTGTTAGCT 60.966 57.895 1.18 0.00 0.00 3.32
327 328 0.672401 GTGCGGCAGGTTGTTAGCTA 60.672 55.000 1.18 0.00 0.00 3.32
328 329 0.391130 TGCGGCAGGTTGTTAGCTAG 60.391 55.000 0.00 0.00 0.00 3.42
329 330 0.108329 GCGGCAGGTTGTTAGCTAGA 60.108 55.000 0.00 0.00 0.00 2.43
330 331 1.473434 GCGGCAGGTTGTTAGCTAGAT 60.473 52.381 0.00 0.00 0.00 1.98
331 332 2.223971 GCGGCAGGTTGTTAGCTAGATA 60.224 50.000 0.00 0.00 0.00 1.98
332 333 3.643763 CGGCAGGTTGTTAGCTAGATAG 58.356 50.000 0.00 0.00 0.00 2.08
333 334 3.318275 CGGCAGGTTGTTAGCTAGATAGA 59.682 47.826 0.00 0.00 0.00 1.98
334 335 4.021894 CGGCAGGTTGTTAGCTAGATAGAT 60.022 45.833 0.00 0.00 0.00 1.98
335 336 5.474825 GGCAGGTTGTTAGCTAGATAGATC 58.525 45.833 0.00 0.00 0.00 2.75
336 337 5.245075 GGCAGGTTGTTAGCTAGATAGATCT 59.755 44.000 0.00 0.00 40.86 2.75
337 338 6.239458 GGCAGGTTGTTAGCTAGATAGATCTT 60.239 42.308 0.00 0.00 38.32 2.40
338 339 7.039644 GGCAGGTTGTTAGCTAGATAGATCTTA 60.040 40.741 0.00 0.00 38.32 2.10
339 340 8.527810 GCAGGTTGTTAGCTAGATAGATCTTAT 58.472 37.037 0.00 0.00 38.32 1.73
344 345 8.815565 TGTTAGCTAGATAGATCTTATCTGGG 57.184 38.462 17.82 13.38 40.51 4.45
345 346 8.394822 TGTTAGCTAGATAGATCTTATCTGGGT 58.605 37.037 21.70 21.70 42.82 4.51
346 347 9.908747 GTTAGCTAGATAGATCTTATCTGGGTA 57.091 37.037 20.47 20.47 41.35 3.69
356 357 8.429237 AGATCTTATCTGGGTATAGTTTGGAG 57.571 38.462 0.00 0.00 38.44 3.86
357 358 8.013667 AGATCTTATCTGGGTATAGTTTGGAGT 58.986 37.037 0.00 0.00 38.44 3.85
358 359 9.310449 GATCTTATCTGGGTATAGTTTGGAGTA 57.690 37.037 0.00 0.00 0.00 2.59
359 360 8.707796 TCTTATCTGGGTATAGTTTGGAGTAG 57.292 38.462 0.00 0.00 0.00 2.57
360 361 8.508601 TCTTATCTGGGTATAGTTTGGAGTAGA 58.491 37.037 0.00 0.00 0.00 2.59
361 362 8.707796 TTATCTGGGTATAGTTTGGAGTAGAG 57.292 38.462 0.00 0.00 0.00 2.43
362 363 5.455872 TCTGGGTATAGTTTGGAGTAGAGG 58.544 45.833 0.00 0.00 0.00 3.69
363 364 5.043582 TCTGGGTATAGTTTGGAGTAGAGGT 60.044 44.000 0.00 0.00 0.00 3.85
364 365 5.206587 TGGGTATAGTTTGGAGTAGAGGTC 58.793 45.833 0.00 0.00 0.00 3.85
365 366 5.206587 GGGTATAGTTTGGAGTAGAGGTCA 58.793 45.833 0.00 0.00 0.00 4.02
366 367 5.659971 GGGTATAGTTTGGAGTAGAGGTCAA 59.340 44.000 0.00 0.00 0.00 3.18
367 368 6.183360 GGGTATAGTTTGGAGTAGAGGTCAAG 60.183 46.154 0.00 0.00 0.00 3.02
368 369 6.380560 GGTATAGTTTGGAGTAGAGGTCAAGT 59.619 42.308 0.00 0.00 0.00 3.16
369 370 6.936968 ATAGTTTGGAGTAGAGGTCAAGTT 57.063 37.500 0.00 0.00 0.00 2.66
370 371 5.632034 AGTTTGGAGTAGAGGTCAAGTTT 57.368 39.130 0.00 0.00 0.00 2.66
371 372 6.742559 AGTTTGGAGTAGAGGTCAAGTTTA 57.257 37.500 0.00 0.00 0.00 2.01
372 373 6.760291 AGTTTGGAGTAGAGGTCAAGTTTAG 58.240 40.000 0.00 0.00 0.00 1.85
373 374 4.803098 TGGAGTAGAGGTCAAGTTTAGC 57.197 45.455 0.00 0.00 0.00 3.09
374 375 4.157246 TGGAGTAGAGGTCAAGTTTAGCA 58.843 43.478 0.00 0.00 0.00 3.49
375 376 4.591498 TGGAGTAGAGGTCAAGTTTAGCAA 59.409 41.667 0.00 0.00 0.00 3.91
376 377 4.930405 GGAGTAGAGGTCAAGTTTAGCAAC 59.070 45.833 0.00 0.00 0.00 4.17
377 378 5.510861 GGAGTAGAGGTCAAGTTTAGCAACA 60.511 44.000 0.00 0.00 35.05 3.33
378 379 5.925509 AGTAGAGGTCAAGTTTAGCAACAA 58.074 37.500 0.00 0.00 35.05 2.83
379 380 5.758784 AGTAGAGGTCAAGTTTAGCAACAAC 59.241 40.000 0.00 0.00 35.05 3.32
380 381 3.883489 AGAGGTCAAGTTTAGCAACAACC 59.117 43.478 0.00 0.00 35.05 3.77
381 382 3.883489 GAGGTCAAGTTTAGCAACAACCT 59.117 43.478 7.80 7.80 41.60 3.50
382 383 3.632145 AGGTCAAGTTTAGCAACAACCTG 59.368 43.478 7.45 0.00 39.37 4.00
383 384 3.243401 GGTCAAGTTTAGCAACAACCTGG 60.243 47.826 0.00 0.00 35.05 4.45
384 385 2.955660 TCAAGTTTAGCAACAACCTGGG 59.044 45.455 0.00 0.00 35.05 4.45
385 386 1.328279 AGTTTAGCAACAACCTGGGC 58.672 50.000 0.00 0.00 35.05 5.36
386 387 0.317160 GTTTAGCAACAACCTGGGCC 59.683 55.000 0.00 0.00 32.54 5.80
387 388 0.187361 TTTAGCAACAACCTGGGCCT 59.813 50.000 4.53 0.00 0.00 5.19
388 389 0.251165 TTAGCAACAACCTGGGCCTC 60.251 55.000 4.53 0.00 0.00 4.70
389 390 1.422977 TAGCAACAACCTGGGCCTCA 61.423 55.000 4.53 0.00 0.00 3.86
390 391 1.607467 GCAACAACCTGGGCCTCAT 60.607 57.895 4.53 0.00 0.00 2.90
391 392 1.187567 GCAACAACCTGGGCCTCATT 61.188 55.000 4.53 0.00 0.00 2.57
392 393 0.604578 CAACAACCTGGGCCTCATTG 59.395 55.000 4.53 8.82 0.00 2.82
393 394 0.188342 AACAACCTGGGCCTCATTGT 59.812 50.000 4.53 9.49 31.91 2.71
394 395 1.072266 ACAACCTGGGCCTCATTGTA 58.928 50.000 15.26 0.00 29.64 2.41
395 396 1.427368 ACAACCTGGGCCTCATTGTAA 59.573 47.619 15.26 0.00 29.64 2.41
396 397 2.042979 ACAACCTGGGCCTCATTGTAAT 59.957 45.455 15.26 0.00 29.64 1.89
397 398 2.689983 CAACCTGGGCCTCATTGTAATC 59.310 50.000 4.53 0.00 0.00 1.75
398 399 2.208872 ACCTGGGCCTCATTGTAATCT 58.791 47.619 4.53 0.00 0.00 2.40
399 400 2.092212 ACCTGGGCCTCATTGTAATCTG 60.092 50.000 4.53 0.00 0.00 2.90
400 401 2.092212 CCTGGGCCTCATTGTAATCTGT 60.092 50.000 4.53 0.00 0.00 3.41
401 402 3.209410 CTGGGCCTCATTGTAATCTGTC 58.791 50.000 4.53 0.00 0.00 3.51
402 403 2.575735 TGGGCCTCATTGTAATCTGTCA 59.424 45.455 4.53 0.00 0.00 3.58
403 404 3.202818 TGGGCCTCATTGTAATCTGTCAT 59.797 43.478 4.53 0.00 0.00 3.06
404 405 3.567164 GGGCCTCATTGTAATCTGTCATG 59.433 47.826 0.84 0.00 0.00 3.07
405 406 4.454678 GGCCTCATTGTAATCTGTCATGA 58.545 43.478 0.00 0.00 0.00 3.07
406 407 4.274459 GGCCTCATTGTAATCTGTCATGAC 59.726 45.833 19.27 19.27 0.00 3.06
407 408 5.121811 GCCTCATTGTAATCTGTCATGACT 58.878 41.667 25.55 8.87 0.00 3.41
408 409 6.283694 GCCTCATTGTAATCTGTCATGACTA 58.716 40.000 25.55 14.64 0.00 2.59
409 410 6.933521 GCCTCATTGTAATCTGTCATGACTAT 59.066 38.462 25.55 16.16 0.00 2.12
410 411 8.090831 GCCTCATTGTAATCTGTCATGACTATA 58.909 37.037 25.55 11.88 0.00 1.31
425 426 8.466086 TCATGACTATATAACATGAATGCGTC 57.534 34.615 20.42 6.98 44.42 5.19
426 427 7.545615 TCATGACTATATAACATGAATGCGTCC 59.454 37.037 20.42 0.00 44.42 4.79
427 428 6.163476 TGACTATATAACATGAATGCGTCCC 58.837 40.000 0.00 0.00 0.00 4.46
428 429 6.014584 TGACTATATAACATGAATGCGTCCCT 60.015 38.462 0.00 0.00 0.00 4.20
429 430 6.166279 ACTATATAACATGAATGCGTCCCTG 58.834 40.000 0.00 0.00 0.00 4.45
430 431 1.378531 TAACATGAATGCGTCCCTGC 58.621 50.000 0.00 0.00 0.00 4.85
431 432 1.315257 AACATGAATGCGTCCCTGCC 61.315 55.000 0.00 0.00 0.00 4.85
432 433 2.514592 ATGAATGCGTCCCTGCCG 60.515 61.111 0.00 0.00 0.00 5.69
433 434 3.030168 ATGAATGCGTCCCTGCCGA 62.030 57.895 0.00 0.00 0.00 5.54
434 435 2.435938 GAATGCGTCCCTGCCGAA 60.436 61.111 0.00 0.00 0.00 4.30
435 436 2.746277 AATGCGTCCCTGCCGAAC 60.746 61.111 0.00 0.00 0.00 3.95
436 437 3.545124 AATGCGTCCCTGCCGAACA 62.545 57.895 0.00 0.00 0.00 3.18
437 438 3.958147 ATGCGTCCCTGCCGAACAG 62.958 63.158 0.00 0.00 46.77 3.16
439 440 4.680237 CGTCCCTGCCGAACAGCA 62.680 66.667 0.29 0.00 45.78 4.41
440 441 2.045926 GTCCCTGCCGAACAGCAT 60.046 61.111 0.29 0.00 45.78 3.79
441 442 1.220749 GTCCCTGCCGAACAGCATA 59.779 57.895 0.29 0.00 45.78 3.14
442 443 1.090052 GTCCCTGCCGAACAGCATAC 61.090 60.000 0.29 0.00 45.78 2.39
443 444 2.173669 CCCTGCCGAACAGCATACG 61.174 63.158 0.29 0.00 45.78 3.06
444 445 2.703409 CTGCCGAACAGCATACGC 59.297 61.111 0.00 0.00 43.09 4.42
456 457 1.846541 GCATACGCTTCTCACCTCTC 58.153 55.000 0.00 0.00 34.30 3.20
457 458 1.135139 GCATACGCTTCTCACCTCTCA 59.865 52.381 0.00 0.00 34.30 3.27
458 459 2.223923 GCATACGCTTCTCACCTCTCAT 60.224 50.000 0.00 0.00 34.30 2.90
459 460 3.739519 GCATACGCTTCTCACCTCTCATT 60.740 47.826 0.00 0.00 34.30 2.57
460 461 2.663826 ACGCTTCTCACCTCTCATTC 57.336 50.000 0.00 0.00 0.00 2.67
461 462 2.175202 ACGCTTCTCACCTCTCATTCT 58.825 47.619 0.00 0.00 0.00 2.40
462 463 2.564947 ACGCTTCTCACCTCTCATTCTT 59.435 45.455 0.00 0.00 0.00 2.52
463 464 3.007398 ACGCTTCTCACCTCTCATTCTTT 59.993 43.478 0.00 0.00 0.00 2.52
464 465 3.616379 CGCTTCTCACCTCTCATTCTTTC 59.384 47.826 0.00 0.00 0.00 2.62
465 466 4.573900 GCTTCTCACCTCTCATTCTTTCA 58.426 43.478 0.00 0.00 0.00 2.69
466 467 4.391523 GCTTCTCACCTCTCATTCTTTCAC 59.608 45.833 0.00 0.00 0.00 3.18
467 468 4.543590 TCTCACCTCTCATTCTTTCACC 57.456 45.455 0.00 0.00 0.00 4.02
468 469 3.261897 TCTCACCTCTCATTCTTTCACCC 59.738 47.826 0.00 0.00 0.00 4.61
469 470 3.251484 TCACCTCTCATTCTTTCACCCT 58.749 45.455 0.00 0.00 0.00 4.34
470 471 3.008375 TCACCTCTCATTCTTTCACCCTG 59.992 47.826 0.00 0.00 0.00 4.45
471 472 2.290577 ACCTCTCATTCTTTCACCCTGC 60.291 50.000 0.00 0.00 0.00 4.85
472 473 2.290514 CCTCTCATTCTTTCACCCTGCA 60.291 50.000 0.00 0.00 0.00 4.41
473 474 3.008330 CTCTCATTCTTTCACCCTGCAG 58.992 50.000 6.78 6.78 0.00 4.41
474 475 1.471684 CTCATTCTTTCACCCTGCAGC 59.528 52.381 8.66 0.00 0.00 5.25
475 476 1.202915 TCATTCTTTCACCCTGCAGCA 60.203 47.619 8.66 0.00 0.00 4.41
476 477 1.068055 CATTCTTTCACCCTGCAGCAC 60.068 52.381 8.66 0.00 0.00 4.40
477 478 0.106769 TTCTTTCACCCTGCAGCACA 60.107 50.000 8.66 0.00 0.00 4.57
478 479 0.535780 TCTTTCACCCTGCAGCACAG 60.536 55.000 8.66 0.00 46.77 3.66
479 480 0.820891 CTTTCACCCTGCAGCACAGT 60.821 55.000 8.66 0.00 45.68 3.55
480 481 0.819259 TTTCACCCTGCAGCACAGTC 60.819 55.000 8.66 0.00 45.68 3.51
481 482 1.699054 TTCACCCTGCAGCACAGTCT 61.699 55.000 8.66 0.00 45.68 3.24
482 483 1.228063 CACCCTGCAGCACAGTCTT 60.228 57.895 8.66 0.00 45.68 3.01
483 484 1.072159 ACCCTGCAGCACAGTCTTC 59.928 57.895 8.66 0.00 45.68 2.87
484 485 2.031516 CCCTGCAGCACAGTCTTCG 61.032 63.158 8.66 0.00 45.68 3.79
485 486 2.675056 CCTGCAGCACAGTCTTCGC 61.675 63.158 8.66 0.00 45.68 4.70
486 487 2.666190 TGCAGCACAGTCTTCGCC 60.666 61.111 0.00 0.00 0.00 5.54
487 488 3.782244 GCAGCACAGTCTTCGCCG 61.782 66.667 0.00 0.00 0.00 6.46
488 489 2.356313 CAGCACAGTCTTCGCCGT 60.356 61.111 0.00 0.00 0.00 5.68
489 490 1.956170 CAGCACAGTCTTCGCCGTT 60.956 57.895 0.00 0.00 0.00 4.44
490 491 1.956170 AGCACAGTCTTCGCCGTTG 60.956 57.895 0.00 0.00 0.00 4.10
491 492 1.954146 GCACAGTCTTCGCCGTTGA 60.954 57.895 0.00 0.00 0.00 3.18
492 493 1.495584 GCACAGTCTTCGCCGTTGAA 61.496 55.000 0.00 0.00 0.00 2.69
493 494 0.232303 CACAGTCTTCGCCGTTGAAC 59.768 55.000 0.00 0.00 0.00 3.18
494 495 0.104304 ACAGTCTTCGCCGTTGAACT 59.896 50.000 0.00 0.00 0.00 3.01
495 496 0.784778 CAGTCTTCGCCGTTGAACTC 59.215 55.000 0.00 0.00 0.00 3.01
496 497 0.674534 AGTCTTCGCCGTTGAACTCT 59.325 50.000 0.00 0.00 0.00 3.24
497 498 1.068741 AGTCTTCGCCGTTGAACTCTT 59.931 47.619 0.00 0.00 0.00 2.85
498 499 1.192534 GTCTTCGCCGTTGAACTCTTG 59.807 52.381 0.00 0.00 0.00 3.02
499 500 1.067974 TCTTCGCCGTTGAACTCTTGA 59.932 47.619 0.00 0.00 0.00 3.02
500 501 1.864711 CTTCGCCGTTGAACTCTTGAA 59.135 47.619 0.00 0.00 0.00 2.69
501 502 2.163818 TCGCCGTTGAACTCTTGAAT 57.836 45.000 0.00 0.00 0.00 2.57
502 503 3.306917 TCGCCGTTGAACTCTTGAATA 57.693 42.857 0.00 0.00 0.00 1.75
503 504 3.250744 TCGCCGTTGAACTCTTGAATAG 58.749 45.455 0.00 0.00 0.00 1.73
504 505 3.057104 TCGCCGTTGAACTCTTGAATAGA 60.057 43.478 0.00 0.00 0.00 1.98
505 506 3.865745 CGCCGTTGAACTCTTGAATAGAT 59.134 43.478 0.00 0.00 30.92 1.98
506 507 4.026475 CGCCGTTGAACTCTTGAATAGATC 60.026 45.833 0.00 0.00 30.92 2.75
507 508 5.112686 GCCGTTGAACTCTTGAATAGATCT 58.887 41.667 0.00 0.00 30.92 2.75
508 509 5.006165 GCCGTTGAACTCTTGAATAGATCTG 59.994 44.000 5.18 0.00 30.92 2.90
509 510 6.333416 CCGTTGAACTCTTGAATAGATCTGA 58.667 40.000 5.18 0.00 30.92 3.27
510 511 6.475076 CCGTTGAACTCTTGAATAGATCTGAG 59.525 42.308 5.18 4.71 36.28 3.35
576 577 0.747255 CTAAGCTCGCTGCCCTAAGA 59.253 55.000 0.00 0.00 44.23 2.10
590 591 2.092914 CCCTAAGAAGACGGCAGGAATT 60.093 50.000 0.00 0.00 0.00 2.17
602 603 0.462047 CAGGAATTTACGCCGGAGCT 60.462 55.000 5.05 0.00 36.60 4.09
603 604 0.179081 AGGAATTTACGCCGGAGCTC 60.179 55.000 5.05 4.71 36.60 4.09
604 605 1.158484 GGAATTTACGCCGGAGCTCC 61.158 60.000 23.79 23.79 36.60 4.70
624 625 1.654105 CGTCAACTACGTCCAGATTGC 59.346 52.381 0.00 0.00 46.72 3.56
644 645 1.066303 CCGAACTTGAGGAGGATCGAG 59.934 57.143 0.00 0.00 39.64 4.04
647 648 2.239681 ACTTGAGGAGGATCGAGGTT 57.760 50.000 0.00 0.00 35.34 3.50
648 649 3.383698 ACTTGAGGAGGATCGAGGTTA 57.616 47.619 0.00 0.00 35.34 2.85
649 650 3.292460 ACTTGAGGAGGATCGAGGTTAG 58.708 50.000 0.00 0.00 35.34 2.34
653 654 3.954904 TGAGGAGGATCGAGGTTAGAAAG 59.045 47.826 0.00 0.00 34.37 2.62
661 662 3.693807 TCGAGGTTAGAAAGAGCCTGTA 58.306 45.455 0.00 0.00 0.00 2.74
690 691 0.537188 CATCTACAGCCGGACTTGGT 59.463 55.000 5.05 0.00 0.00 3.67
728 729 3.634397 TTGCAAAGATTCCGAGATCCT 57.366 42.857 0.00 0.00 0.00 3.24
729 730 4.753516 TTGCAAAGATTCCGAGATCCTA 57.246 40.909 0.00 0.00 0.00 2.94
730 731 4.963318 TGCAAAGATTCCGAGATCCTAT 57.037 40.909 0.00 0.00 0.00 2.57
787 790 8.592105 ACATGAAACATTGTAGGTTTGAATTG 57.408 30.769 0.00 0.00 38.50 2.32
852 863 9.429359 CAACCAAAGGCACATGTTTATTTAATA 57.571 29.630 0.00 0.00 0.00 0.98
916 930 3.314541 ACACTACCTGAGCCGTAAAAG 57.685 47.619 0.00 0.00 0.00 2.27
1071 1157 0.178967 TTGTCCTGCTTGATTGGCCA 60.179 50.000 0.00 0.00 0.00 5.36
1089 1175 2.218759 GCCAATGTATGTCGATGTCGTC 59.781 50.000 2.04 0.00 40.80 4.20
1101 1187 0.805614 ATGTCGTCTCTCTGTCGGTG 59.194 55.000 0.00 0.00 0.00 4.94
1121 1207 2.369633 ACCCATGGATCAGCGCAGA 61.370 57.895 15.22 7.87 0.00 4.26
1180 1266 2.074547 ATTCAGCATTGCAGCAACAC 57.925 45.000 10.85 5.49 36.85 3.32
1246 1332 1.196766 TGCCACCTGAGCACATCTCT 61.197 55.000 0.00 0.00 42.38 3.10
1281 1367 6.463049 CGACTTCATATCTGTCCCCTAACAAT 60.463 42.308 0.00 0.00 0.00 2.71
1441 1529 5.212194 CACACCCTATTTGAAAAGTTCACG 58.788 41.667 0.00 0.00 39.87 4.35
1444 1532 4.517832 ACCCTATTTGAAAAGTTCACGACC 59.482 41.667 0.00 0.00 39.87 4.79
1453 1541 2.981859 AGTTCACGACCTCTGTTGTT 57.018 45.000 0.00 0.00 36.96 2.83
1472 1560 8.500753 TGTTGTTAAGCAATGGTATAGGTTAG 57.499 34.615 0.00 0.00 39.55 2.34
1542 1634 3.135994 GAGAACGGAAAAGGTGTTGCTA 58.864 45.455 0.00 0.00 0.00 3.49
1598 1692 3.686726 CACCAACAGTATCCTCTTGCTTC 59.313 47.826 0.00 0.00 0.00 3.86
1646 1740 7.040062 CCACTAATAATCACCAGAACCAAAACA 60.040 37.037 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 7.218228 TGTCTTGTTCTTGCATGAAATACAT 57.782 32.000 15.87 0.00 40.17 2.29
21 22 6.631971 TGTCTTGTTCTTGCATGAAATACA 57.368 33.333 15.87 13.74 0.00 2.29
24 25 9.399797 TCTATATGTCTTGTTCTTGCATGAAAT 57.600 29.630 15.87 8.06 0.00 2.17
25 26 8.791327 TCTATATGTCTTGTTCTTGCATGAAA 57.209 30.769 15.87 2.03 0.00 2.69
26 27 8.260114 TCTCTATATGTCTTGTTCTTGCATGAA 58.740 33.333 10.76 10.76 0.00 2.57
27 28 7.785033 TCTCTATATGTCTTGTTCTTGCATGA 58.215 34.615 0.00 0.00 0.00 3.07
28 29 8.604640 ATCTCTATATGTCTTGTTCTTGCATG 57.395 34.615 0.00 0.00 0.00 4.06
29 30 9.053840 CAATCTCTATATGTCTTGTTCTTGCAT 57.946 33.333 0.00 0.00 0.00 3.96
30 31 8.260114 TCAATCTCTATATGTCTTGTTCTTGCA 58.740 33.333 0.00 0.00 0.00 4.08
31 32 8.547069 GTCAATCTCTATATGTCTTGTTCTTGC 58.453 37.037 0.00 0.00 0.00 4.01
32 33 9.814899 AGTCAATCTCTATATGTCTTGTTCTTG 57.185 33.333 0.00 0.00 0.00 3.02
45 46 9.952188 CGAACAAAGTGATAGTCAATCTCTATA 57.048 33.333 0.00 0.00 37.43 1.31
46 47 8.470805 ACGAACAAAGTGATAGTCAATCTCTAT 58.529 33.333 0.00 0.00 37.43 1.98
47 48 7.755373 CACGAACAAAGTGATAGTCAATCTCTA 59.245 37.037 0.00 0.00 41.83 2.43
48 49 6.587990 CACGAACAAAGTGATAGTCAATCTCT 59.412 38.462 0.00 0.00 41.83 3.10
49 50 6.586463 TCACGAACAAAGTGATAGTCAATCTC 59.414 38.462 0.00 0.00 42.91 2.75
50 51 6.455647 TCACGAACAAAGTGATAGTCAATCT 58.544 36.000 0.00 0.00 42.91 2.40
51 52 6.706055 TCACGAACAAAGTGATAGTCAATC 57.294 37.500 0.00 0.00 42.91 2.67
52 53 7.441157 TCTTTCACGAACAAAGTGATAGTCAAT 59.559 33.333 13.48 0.00 46.44 2.57
53 54 6.759356 TCTTTCACGAACAAAGTGATAGTCAA 59.241 34.615 13.48 0.50 46.44 3.18
54 55 6.277605 TCTTTCACGAACAAAGTGATAGTCA 58.722 36.000 13.48 0.00 46.44 3.41
55 56 6.421202 ACTCTTTCACGAACAAAGTGATAGTC 59.579 38.462 13.48 0.00 46.44 2.59
56 57 6.281405 ACTCTTTCACGAACAAAGTGATAGT 58.719 36.000 13.48 9.01 46.44 2.12
57 58 6.771188 ACTCTTTCACGAACAAAGTGATAG 57.229 37.500 9.45 9.45 46.44 2.08
58 59 6.365247 GCTACTCTTTCACGAACAAAGTGATA 59.635 38.462 0.00 0.00 46.44 2.15
59 60 5.177696 GCTACTCTTTCACGAACAAAGTGAT 59.822 40.000 0.00 0.00 46.44 3.06
60 61 4.506654 GCTACTCTTTCACGAACAAAGTGA 59.493 41.667 11.65 0.00 45.68 3.41
61 62 4.270084 TGCTACTCTTTCACGAACAAAGTG 59.730 41.667 0.00 0.00 40.71 3.16
62 63 4.270325 GTGCTACTCTTTCACGAACAAAGT 59.730 41.667 0.00 0.00 33.32 2.66
63 64 4.270084 TGTGCTACTCTTTCACGAACAAAG 59.730 41.667 0.00 0.00 33.69 2.77
64 65 4.185394 TGTGCTACTCTTTCACGAACAAA 58.815 39.130 0.00 0.00 33.69 2.83
65 66 3.787785 TGTGCTACTCTTTCACGAACAA 58.212 40.909 0.00 0.00 33.69 2.83
66 67 3.067601 TCTGTGCTACTCTTTCACGAACA 59.932 43.478 0.00 0.00 33.69 3.18
67 68 3.639538 TCTGTGCTACTCTTTCACGAAC 58.360 45.455 0.00 0.00 33.69 3.95
68 69 4.316205 TTCTGTGCTACTCTTTCACGAA 57.684 40.909 0.00 0.00 33.69 3.85
69 70 4.049186 GTTTCTGTGCTACTCTTTCACGA 58.951 43.478 0.00 0.00 33.69 4.35
70 71 3.184581 GGTTTCTGTGCTACTCTTTCACG 59.815 47.826 0.00 0.00 33.69 4.35
71 72 3.184581 CGGTTTCTGTGCTACTCTTTCAC 59.815 47.826 0.00 0.00 0.00 3.18
72 73 3.390135 CGGTTTCTGTGCTACTCTTTCA 58.610 45.455 0.00 0.00 0.00 2.69
73 74 2.157863 GCGGTTTCTGTGCTACTCTTTC 59.842 50.000 0.00 0.00 0.00 2.62
74 75 2.143925 GCGGTTTCTGTGCTACTCTTT 58.856 47.619 0.00 0.00 0.00 2.52
75 76 1.344763 AGCGGTTTCTGTGCTACTCTT 59.655 47.619 0.00 0.00 37.15 2.85
76 77 0.969894 AGCGGTTTCTGTGCTACTCT 59.030 50.000 0.00 0.00 37.15 3.24
77 78 2.163815 TCTAGCGGTTTCTGTGCTACTC 59.836 50.000 0.00 0.00 40.06 2.59
78 79 2.168496 TCTAGCGGTTTCTGTGCTACT 58.832 47.619 0.00 0.00 40.06 2.57
79 80 2.649331 TCTAGCGGTTTCTGTGCTAC 57.351 50.000 0.00 0.00 40.06 3.58
80 81 3.671008 TTTCTAGCGGTTTCTGTGCTA 57.329 42.857 0.00 0.00 40.06 3.49
81 82 2.543777 TTTCTAGCGGTTTCTGTGCT 57.456 45.000 0.00 0.00 42.58 4.40
82 83 3.682858 TGTATTTCTAGCGGTTTCTGTGC 59.317 43.478 0.00 0.00 0.00 4.57
83 84 4.929808 ACTGTATTTCTAGCGGTTTCTGTG 59.070 41.667 0.00 0.00 0.00 3.66
84 85 5.148651 ACTGTATTTCTAGCGGTTTCTGT 57.851 39.130 0.00 0.00 0.00 3.41
85 86 5.637810 TGAACTGTATTTCTAGCGGTTTCTG 59.362 40.000 0.00 0.00 32.54 3.02
86 87 5.790593 TGAACTGTATTTCTAGCGGTTTCT 58.209 37.500 0.00 0.00 32.54 2.52
87 88 6.663944 ATGAACTGTATTTCTAGCGGTTTC 57.336 37.500 0.00 0.00 32.54 2.78
88 89 6.093633 GGAATGAACTGTATTTCTAGCGGTTT 59.906 38.462 0.00 0.00 32.54 3.27
89 90 5.585047 GGAATGAACTGTATTTCTAGCGGTT 59.415 40.000 0.00 0.00 34.77 4.44
90 91 5.116882 GGAATGAACTGTATTTCTAGCGGT 58.883 41.667 0.00 0.00 0.00 5.68
91 92 5.116180 TGGAATGAACTGTATTTCTAGCGG 58.884 41.667 0.00 0.00 0.00 5.52
92 93 6.092122 TGTTGGAATGAACTGTATTTCTAGCG 59.908 38.462 0.00 0.00 0.00 4.26
93 94 7.377766 TGTTGGAATGAACTGTATTTCTAGC 57.622 36.000 0.00 0.00 0.00 3.42
94 95 7.824289 TCCTGTTGGAATGAACTGTATTTCTAG 59.176 37.037 0.00 0.00 39.87 2.43
95 96 7.685481 TCCTGTTGGAATGAACTGTATTTCTA 58.315 34.615 0.00 0.00 39.87 2.10
96 97 6.542821 TCCTGTTGGAATGAACTGTATTTCT 58.457 36.000 0.00 0.00 39.87 2.52
97 98 6.655003 TCTCCTGTTGGAATGAACTGTATTTC 59.345 38.462 0.00 0.00 42.66 2.17
98 99 6.542821 TCTCCTGTTGGAATGAACTGTATTT 58.457 36.000 0.00 0.00 42.66 1.40
99 100 6.126863 TCTCCTGTTGGAATGAACTGTATT 57.873 37.500 0.00 0.00 42.66 1.89
100 101 5.762179 TCTCCTGTTGGAATGAACTGTAT 57.238 39.130 0.00 0.00 42.66 2.29
101 102 5.248248 TGATCTCCTGTTGGAATGAACTGTA 59.752 40.000 0.00 0.00 42.66 2.74
102 103 4.042062 TGATCTCCTGTTGGAATGAACTGT 59.958 41.667 0.00 0.00 42.66 3.55
103 104 4.582869 TGATCTCCTGTTGGAATGAACTG 58.417 43.478 0.00 0.00 42.66 3.16
104 105 4.916041 TGATCTCCTGTTGGAATGAACT 57.084 40.909 0.00 0.00 42.66 3.01
105 106 5.006386 ACTTGATCTCCTGTTGGAATGAAC 58.994 41.667 0.00 0.00 42.66 3.18
106 107 5.246981 ACTTGATCTCCTGTTGGAATGAA 57.753 39.130 0.00 0.00 42.66 2.57
107 108 4.916041 ACTTGATCTCCTGTTGGAATGA 57.084 40.909 0.00 0.00 42.66 2.57
108 109 4.380233 GCAACTTGATCTCCTGTTGGAATG 60.380 45.833 16.21 0.00 42.66 2.67
109 110 3.760684 GCAACTTGATCTCCTGTTGGAAT 59.239 43.478 16.21 0.00 42.66 3.01
110 111 3.149196 GCAACTTGATCTCCTGTTGGAA 58.851 45.455 16.21 0.00 42.66 3.53
111 112 2.373169 AGCAACTTGATCTCCTGTTGGA 59.627 45.455 16.21 0.00 39.82 3.53
112 113 2.486982 CAGCAACTTGATCTCCTGTTGG 59.513 50.000 16.21 0.00 39.82 3.77
113 114 3.405831 TCAGCAACTTGATCTCCTGTTG 58.594 45.455 12.71 12.71 41.64 3.33
114 115 3.777106 TCAGCAACTTGATCTCCTGTT 57.223 42.857 0.00 0.00 0.00 3.16
115 116 3.607741 CATCAGCAACTTGATCTCCTGT 58.392 45.455 0.00 0.00 35.67 4.00
116 117 2.943690 CCATCAGCAACTTGATCTCCTG 59.056 50.000 0.00 0.00 35.67 3.86
117 118 2.683152 GCCATCAGCAACTTGATCTCCT 60.683 50.000 0.00 0.00 42.97 3.69
118 119 1.674962 GCCATCAGCAACTTGATCTCC 59.325 52.381 0.00 0.00 42.97 3.71
138 139 7.015877 GTCGAATTTGTAAAGGCTTAGTGAAG 58.984 38.462 0.00 0.00 35.60 3.02
139 140 6.483974 TGTCGAATTTGTAAAGGCTTAGTGAA 59.516 34.615 0.00 0.00 0.00 3.18
140 141 5.992829 TGTCGAATTTGTAAAGGCTTAGTGA 59.007 36.000 0.00 0.00 0.00 3.41
141 142 6.073222 ACTGTCGAATTTGTAAAGGCTTAGTG 60.073 38.462 0.00 0.00 0.00 2.74
142 143 5.995897 ACTGTCGAATTTGTAAAGGCTTAGT 59.004 36.000 0.00 0.00 0.00 2.24
143 144 6.481954 ACTGTCGAATTTGTAAAGGCTTAG 57.518 37.500 0.00 0.00 0.00 2.18
144 145 6.072893 GGAACTGTCGAATTTGTAAAGGCTTA 60.073 38.462 0.00 0.00 0.00 3.09
145 146 5.278315 GGAACTGTCGAATTTGTAAAGGCTT 60.278 40.000 0.00 0.00 0.00 4.35
146 147 4.215613 GGAACTGTCGAATTTGTAAAGGCT 59.784 41.667 0.00 0.00 0.00 4.58
147 148 4.023536 TGGAACTGTCGAATTTGTAAAGGC 60.024 41.667 0.00 0.00 0.00 4.35
148 149 5.682943 TGGAACTGTCGAATTTGTAAAGG 57.317 39.130 0.00 0.00 0.00 3.11
149 150 5.625311 GCTTGGAACTGTCGAATTTGTAAAG 59.375 40.000 0.00 0.00 0.00 1.85
150 151 5.506649 GGCTTGGAACTGTCGAATTTGTAAA 60.507 40.000 0.00 0.00 0.00 2.01
151 152 4.023536 GGCTTGGAACTGTCGAATTTGTAA 60.024 41.667 0.00 0.00 0.00 2.41
152 153 3.500680 GGCTTGGAACTGTCGAATTTGTA 59.499 43.478 0.00 0.00 0.00 2.41
153 154 2.293399 GGCTTGGAACTGTCGAATTTGT 59.707 45.455 0.00 0.00 0.00 2.83
154 155 2.554032 AGGCTTGGAACTGTCGAATTTG 59.446 45.455 0.00 0.00 0.00 2.32
155 156 2.863809 AGGCTTGGAACTGTCGAATTT 58.136 42.857 0.00 0.00 0.00 1.82
156 157 2.568623 AGGCTTGGAACTGTCGAATT 57.431 45.000 0.00 0.00 0.00 2.17
157 158 2.224523 TGAAGGCTTGGAACTGTCGAAT 60.225 45.455 3.46 0.00 0.00 3.34
158 159 1.140052 TGAAGGCTTGGAACTGTCGAA 59.860 47.619 3.46 0.00 0.00 3.71
159 160 0.756294 TGAAGGCTTGGAACTGTCGA 59.244 50.000 3.46 0.00 0.00 4.20
160 161 1.532868 CTTGAAGGCTTGGAACTGTCG 59.467 52.381 3.46 0.00 0.00 4.35
161 162 2.851195 TCTTGAAGGCTTGGAACTGTC 58.149 47.619 3.46 0.00 0.00 3.51
162 163 2.952310 GTTCTTGAAGGCTTGGAACTGT 59.048 45.455 20.39 0.00 35.03 3.55
163 164 2.951642 TGTTCTTGAAGGCTTGGAACTG 59.048 45.455 24.35 6.13 37.66 3.16
164 165 3.297134 TGTTCTTGAAGGCTTGGAACT 57.703 42.857 24.35 0.00 37.66 3.01
165 166 4.279420 AGATTGTTCTTGAAGGCTTGGAAC 59.721 41.667 20.65 20.65 37.41 3.62
166 167 4.279169 CAGATTGTTCTTGAAGGCTTGGAA 59.721 41.667 3.46 3.64 0.00 3.53
167 168 3.822735 CAGATTGTTCTTGAAGGCTTGGA 59.177 43.478 3.46 0.00 0.00 3.53
168 169 3.822735 TCAGATTGTTCTTGAAGGCTTGG 59.177 43.478 3.46 0.00 0.00 3.61
169 170 5.218139 GTTCAGATTGTTCTTGAAGGCTTG 58.782 41.667 3.46 0.00 0.00 4.01
170 171 4.889409 TGTTCAGATTGTTCTTGAAGGCTT 59.111 37.500 0.00 0.00 0.00 4.35
171 172 4.464008 TGTTCAGATTGTTCTTGAAGGCT 58.536 39.130 0.00 0.00 0.00 4.58
172 173 4.836125 TGTTCAGATTGTTCTTGAAGGC 57.164 40.909 0.00 0.00 0.00 4.35
173 174 6.860023 GTCAATGTTCAGATTGTTCTTGAAGG 59.140 38.462 0.00 0.00 35.25 3.46
174 175 7.420002 TGTCAATGTTCAGATTGTTCTTGAAG 58.580 34.615 0.00 0.00 35.25 3.02
175 176 7.332213 TGTCAATGTTCAGATTGTTCTTGAA 57.668 32.000 0.00 0.00 35.25 2.69
176 177 6.940831 TGTCAATGTTCAGATTGTTCTTGA 57.059 33.333 0.00 0.00 35.25 3.02
177 178 7.143340 ACATGTCAATGTTCAGATTGTTCTTG 58.857 34.615 0.00 0.00 44.94 3.02
178 179 7.281040 ACATGTCAATGTTCAGATTGTTCTT 57.719 32.000 0.00 0.00 44.94 2.52
179 180 6.889301 ACATGTCAATGTTCAGATTGTTCT 57.111 33.333 0.00 0.00 44.94 3.01
192 193 6.039047 CCTCCCTCAATCTTAACATGTCAATG 59.961 42.308 0.00 0.00 39.89 2.82
193 194 6.069440 TCCTCCCTCAATCTTAACATGTCAAT 60.069 38.462 0.00 0.00 0.00 2.57
194 195 5.250543 TCCTCCCTCAATCTTAACATGTCAA 59.749 40.000 0.00 0.00 0.00 3.18
195 196 4.782691 TCCTCCCTCAATCTTAACATGTCA 59.217 41.667 0.00 0.00 0.00 3.58
196 197 5.359194 TCCTCCCTCAATCTTAACATGTC 57.641 43.478 0.00 0.00 0.00 3.06
197 198 5.192522 ACATCCTCCCTCAATCTTAACATGT 59.807 40.000 0.00 0.00 0.00 3.21
198 199 5.688807 ACATCCTCCCTCAATCTTAACATG 58.311 41.667 0.00 0.00 0.00 3.21
199 200 5.983333 ACATCCTCCCTCAATCTTAACAT 57.017 39.130 0.00 0.00 0.00 2.71
200 201 5.779241 AACATCCTCCCTCAATCTTAACA 57.221 39.130 0.00 0.00 0.00 2.41
201 202 7.201617 CGTTTAACATCCTCCCTCAATCTTAAC 60.202 40.741 0.00 0.00 0.00 2.01
202 203 6.821665 CGTTTAACATCCTCCCTCAATCTTAA 59.178 38.462 0.00 0.00 0.00 1.85
203 204 6.155565 TCGTTTAACATCCTCCCTCAATCTTA 59.844 38.462 0.00 0.00 0.00 2.10
204 205 5.045869 TCGTTTAACATCCTCCCTCAATCTT 60.046 40.000 0.00 0.00 0.00 2.40
205 206 4.469945 TCGTTTAACATCCTCCCTCAATCT 59.530 41.667 0.00 0.00 0.00 2.40
206 207 4.766375 TCGTTTAACATCCTCCCTCAATC 58.234 43.478 0.00 0.00 0.00 2.67
207 208 4.837093 TCGTTTAACATCCTCCCTCAAT 57.163 40.909 0.00 0.00 0.00 2.57
208 209 4.837093 ATCGTTTAACATCCTCCCTCAA 57.163 40.909 0.00 0.00 0.00 3.02
209 210 4.344102 CCTATCGTTTAACATCCTCCCTCA 59.656 45.833 0.00 0.00 0.00 3.86
210 211 4.799917 GCCTATCGTTTAACATCCTCCCTC 60.800 50.000 0.00 0.00 0.00 4.30
211 212 3.071167 GCCTATCGTTTAACATCCTCCCT 59.929 47.826 0.00 0.00 0.00 4.20
212 213 3.071167 AGCCTATCGTTTAACATCCTCCC 59.929 47.826 0.00 0.00 0.00 4.30
213 214 4.338379 AGCCTATCGTTTAACATCCTCC 57.662 45.455 0.00 0.00 0.00 4.30
214 215 5.116882 ACAAGCCTATCGTTTAACATCCTC 58.883 41.667 0.00 0.00 0.00 3.71
215 216 5.099042 ACAAGCCTATCGTTTAACATCCT 57.901 39.130 0.00 0.00 0.00 3.24
216 217 6.278363 TCTACAAGCCTATCGTTTAACATCC 58.722 40.000 0.00 0.00 0.00 3.51
217 218 7.201145 TCTCTACAAGCCTATCGTTTAACATC 58.799 38.462 0.00 0.00 0.00 3.06
218 219 7.108841 TCTCTACAAGCCTATCGTTTAACAT 57.891 36.000 0.00 0.00 0.00 2.71
219 220 6.519679 TCTCTACAAGCCTATCGTTTAACA 57.480 37.500 0.00 0.00 0.00 2.41
220 221 7.491696 ACATTCTCTACAAGCCTATCGTTTAAC 59.508 37.037 0.00 0.00 0.00 2.01
221 222 7.553334 ACATTCTCTACAAGCCTATCGTTTAA 58.447 34.615 0.00 0.00 0.00 1.52
222 223 7.108841 ACATTCTCTACAAGCCTATCGTTTA 57.891 36.000 0.00 0.00 0.00 2.01
223 224 5.978814 ACATTCTCTACAAGCCTATCGTTT 58.021 37.500 0.00 0.00 0.00 3.60
224 225 5.599999 ACATTCTCTACAAGCCTATCGTT 57.400 39.130 0.00 0.00 0.00 3.85
225 226 6.902771 ATACATTCTCTACAAGCCTATCGT 57.097 37.500 0.00 0.00 0.00 3.73
226 227 7.337184 TCCTATACATTCTCTACAAGCCTATCG 59.663 40.741 0.00 0.00 0.00 2.92
227 228 8.582657 TCCTATACATTCTCTACAAGCCTATC 57.417 38.462 0.00 0.00 0.00 2.08
229 230 9.688091 CTATCCTATACATTCTCTACAAGCCTA 57.312 37.037 0.00 0.00 0.00 3.93
230 231 8.394822 TCTATCCTATACATTCTCTACAAGCCT 58.605 37.037 0.00 0.00 0.00 4.58
231 232 8.582657 TCTATCCTATACATTCTCTACAAGCC 57.417 38.462 0.00 0.00 0.00 4.35
244 245 9.074576 ACATGTCACGTATTTCTATCCTATACA 57.925 33.333 0.00 0.00 0.00 2.29
245 246 9.909644 AACATGTCACGTATTTCTATCCTATAC 57.090 33.333 0.00 0.00 0.00 1.47
246 247 9.908152 CAACATGTCACGTATTTCTATCCTATA 57.092 33.333 0.00 0.00 0.00 1.31
247 248 8.421784 ACAACATGTCACGTATTTCTATCCTAT 58.578 33.333 0.00 0.00 0.00 2.57
248 249 7.778083 ACAACATGTCACGTATTTCTATCCTA 58.222 34.615 0.00 0.00 0.00 2.94
249 250 6.640518 ACAACATGTCACGTATTTCTATCCT 58.359 36.000 0.00 0.00 0.00 3.24
250 251 6.903883 ACAACATGTCACGTATTTCTATCC 57.096 37.500 0.00 0.00 0.00 2.59
265 266 9.589111 TTACAATATACATACGTGACAACATGT 57.411 29.630 0.00 0.87 46.32 3.21
266 267 9.843874 GTTACAATATACATACGTGACAACATG 57.156 33.333 0.00 0.00 38.80 3.21
267 268 8.748582 CGTTACAATATACATACGTGACAACAT 58.251 33.333 0.00 0.00 0.00 2.71
268 269 7.253717 GCGTTACAATATACATACGTGACAACA 60.254 37.037 0.00 0.00 0.00 3.33
269 270 7.053200 GCGTTACAATATACATACGTGACAAC 58.947 38.462 0.00 0.00 0.00 3.32
270 271 6.750963 TGCGTTACAATATACATACGTGACAA 59.249 34.615 0.00 0.00 0.00 3.18
271 272 6.264088 TGCGTTACAATATACATACGTGACA 58.736 36.000 0.00 0.00 0.00 3.58
272 273 6.736807 TGCGTTACAATATACATACGTGAC 57.263 37.500 0.00 0.00 0.00 3.67
273 274 8.074972 TGTATGCGTTACAATATACATACGTGA 58.925 33.333 0.00 0.00 41.60 4.35
274 275 8.218256 TGTATGCGTTACAATATACATACGTG 57.782 34.615 0.00 0.00 41.60 4.49
275 276 8.856247 CATGTATGCGTTACAATATACATACGT 58.144 33.333 12.44 0.00 43.84 3.57
276 277 8.856247 ACATGTATGCGTTACAATATACATACG 58.144 33.333 0.00 0.00 43.84 3.06
282 283 9.581099 CCAGATACATGTATGCGTTACAATATA 57.419 33.333 22.93 0.00 43.84 0.86
283 284 8.094548 ACCAGATACATGTATGCGTTACAATAT 58.905 33.333 22.93 0.00 43.84 1.28
284 285 7.383843 CACCAGATACATGTATGCGTTACAATA 59.616 37.037 22.93 0.00 43.84 1.90
285 286 6.202762 CACCAGATACATGTATGCGTTACAAT 59.797 38.462 22.93 0.00 43.84 2.71
286 287 5.522097 CACCAGATACATGTATGCGTTACAA 59.478 40.000 22.93 0.00 43.84 2.41
287 288 5.047188 CACCAGATACATGTATGCGTTACA 58.953 41.667 22.93 2.23 44.71 2.41
288 289 4.084537 GCACCAGATACATGTATGCGTTAC 60.085 45.833 22.93 7.42 0.00 2.50
289 290 4.055360 GCACCAGATACATGTATGCGTTA 58.945 43.478 22.93 0.00 0.00 3.18
290 291 2.872245 GCACCAGATACATGTATGCGTT 59.128 45.455 22.93 0.00 0.00 4.84
291 292 2.483876 GCACCAGATACATGTATGCGT 58.516 47.619 22.93 12.16 0.00 5.24
292 293 1.456923 CGCACCAGATACATGTATGCG 59.543 52.381 26.86 26.86 43.13 4.73
293 294 1.800586 CCGCACCAGATACATGTATGC 59.199 52.381 22.93 18.63 0.00 3.14
294 295 1.800586 GCCGCACCAGATACATGTATG 59.199 52.381 22.93 11.01 0.00 2.39
295 296 1.416030 TGCCGCACCAGATACATGTAT 59.584 47.619 18.31 18.31 0.00 2.29
296 297 0.827368 TGCCGCACCAGATACATGTA 59.173 50.000 8.27 8.27 0.00 2.29
297 298 0.462581 CTGCCGCACCAGATACATGT 60.463 55.000 2.69 2.69 34.77 3.21
298 299 1.162181 CCTGCCGCACCAGATACATG 61.162 60.000 2.38 0.00 34.77 3.21
299 300 1.146930 CCTGCCGCACCAGATACAT 59.853 57.895 2.38 0.00 34.77 2.29
300 301 1.836999 AACCTGCCGCACCAGATACA 61.837 55.000 2.38 0.00 34.77 2.29
301 302 1.078426 AACCTGCCGCACCAGATAC 60.078 57.895 2.38 0.00 34.77 2.24
302 303 1.078497 CAACCTGCCGCACCAGATA 60.078 57.895 2.38 0.00 34.77 1.98
303 304 2.360350 CAACCTGCCGCACCAGAT 60.360 61.111 2.38 0.00 34.77 2.90
304 305 2.046009 TAACAACCTGCCGCACCAGA 62.046 55.000 2.38 0.00 34.77 3.86
305 306 1.577328 CTAACAACCTGCCGCACCAG 61.577 60.000 0.00 0.00 0.00 4.00
306 307 1.599518 CTAACAACCTGCCGCACCA 60.600 57.895 0.00 0.00 0.00 4.17
307 308 2.978018 GCTAACAACCTGCCGCACC 61.978 63.158 0.00 0.00 0.00 5.01
308 309 0.672401 TAGCTAACAACCTGCCGCAC 60.672 55.000 0.00 0.00 0.00 5.34
309 310 0.391130 CTAGCTAACAACCTGCCGCA 60.391 55.000 0.00 0.00 0.00 5.69
310 311 0.108329 TCTAGCTAACAACCTGCCGC 60.108 55.000 0.00 0.00 0.00 6.53
311 312 2.604046 ATCTAGCTAACAACCTGCCG 57.396 50.000 0.00 0.00 0.00 5.69
312 313 4.939052 TCTATCTAGCTAACAACCTGCC 57.061 45.455 0.00 0.00 0.00 4.85
313 314 6.339587 AGATCTATCTAGCTAACAACCTGC 57.660 41.667 0.00 0.00 34.85 4.85
318 319 9.249053 CCCAGATAAGATCTATCTAGCTAACAA 57.751 37.037 0.00 0.00 37.58 2.83
319 320 8.394822 ACCCAGATAAGATCTATCTAGCTAACA 58.605 37.037 0.00 0.00 37.58 2.41
320 321 8.817092 ACCCAGATAAGATCTATCTAGCTAAC 57.183 38.462 0.00 0.00 37.58 2.34
330 331 9.535170 CTCCAAACTATACCCAGATAAGATCTA 57.465 37.037 0.00 0.00 37.58 1.98
331 332 8.013667 ACTCCAAACTATACCCAGATAAGATCT 58.986 37.037 0.00 0.00 41.15 2.75
332 333 8.196378 ACTCCAAACTATACCCAGATAAGATC 57.804 38.462 0.00 0.00 0.00 2.75
333 334 9.315363 CTACTCCAAACTATACCCAGATAAGAT 57.685 37.037 0.00 0.00 0.00 2.40
334 335 8.508601 TCTACTCCAAACTATACCCAGATAAGA 58.491 37.037 0.00 0.00 0.00 2.10
335 336 8.707796 TCTACTCCAAACTATACCCAGATAAG 57.292 38.462 0.00 0.00 0.00 1.73
336 337 7.728981 CCTCTACTCCAAACTATACCCAGATAA 59.271 40.741 0.00 0.00 0.00 1.75
337 338 7.146997 ACCTCTACTCCAAACTATACCCAGATA 60.147 40.741 0.00 0.00 0.00 1.98
338 339 6.078664 CCTCTACTCCAAACTATACCCAGAT 58.921 44.000 0.00 0.00 0.00 2.90
339 340 5.043582 ACCTCTACTCCAAACTATACCCAGA 60.044 44.000 0.00 0.00 0.00 3.86
340 341 5.209659 ACCTCTACTCCAAACTATACCCAG 58.790 45.833 0.00 0.00 0.00 4.45
341 342 5.206587 GACCTCTACTCCAAACTATACCCA 58.793 45.833 0.00 0.00 0.00 4.51
342 343 5.206587 TGACCTCTACTCCAAACTATACCC 58.793 45.833 0.00 0.00 0.00 3.69
343 344 6.380560 ACTTGACCTCTACTCCAAACTATACC 59.619 42.308 0.00 0.00 0.00 2.73
344 345 7.407393 ACTTGACCTCTACTCCAAACTATAC 57.593 40.000 0.00 0.00 0.00 1.47
345 346 8.431910 AAACTTGACCTCTACTCCAAACTATA 57.568 34.615 0.00 0.00 0.00 1.31
346 347 6.936968 AACTTGACCTCTACTCCAAACTAT 57.063 37.500 0.00 0.00 0.00 2.12
347 348 6.742559 AAACTTGACCTCTACTCCAAACTA 57.257 37.500 0.00 0.00 0.00 2.24
348 349 5.632034 AAACTTGACCTCTACTCCAAACT 57.368 39.130 0.00 0.00 0.00 2.66
349 350 5.408909 GCTAAACTTGACCTCTACTCCAAAC 59.591 44.000 0.00 0.00 0.00 2.93
350 351 5.071250 TGCTAAACTTGACCTCTACTCCAAA 59.929 40.000 0.00 0.00 0.00 3.28
351 352 4.591498 TGCTAAACTTGACCTCTACTCCAA 59.409 41.667 0.00 0.00 0.00 3.53
352 353 4.157246 TGCTAAACTTGACCTCTACTCCA 58.843 43.478 0.00 0.00 0.00 3.86
353 354 4.803098 TGCTAAACTTGACCTCTACTCC 57.197 45.455 0.00 0.00 0.00 3.85
354 355 5.539048 TGTTGCTAAACTTGACCTCTACTC 58.461 41.667 0.00 0.00 37.19 2.59
355 356 5.546621 TGTTGCTAAACTTGACCTCTACT 57.453 39.130 0.00 0.00 37.19 2.57
356 357 5.049612 GGTTGTTGCTAAACTTGACCTCTAC 60.050 44.000 0.00 0.00 37.19 2.59
357 358 5.061179 GGTTGTTGCTAAACTTGACCTCTA 58.939 41.667 0.00 0.00 37.19 2.43
358 359 3.883489 GGTTGTTGCTAAACTTGACCTCT 59.117 43.478 0.00 0.00 37.19 3.69
359 360 3.883489 AGGTTGTTGCTAAACTTGACCTC 59.117 43.478 0.00 0.00 38.91 3.85
360 361 3.632145 CAGGTTGTTGCTAAACTTGACCT 59.368 43.478 3.80 4.55 41.36 3.85
361 362 3.243401 CCAGGTTGTTGCTAAACTTGACC 60.243 47.826 9.35 5.50 36.91 4.02
362 363 3.243401 CCCAGGTTGTTGCTAAACTTGAC 60.243 47.826 9.35 0.00 36.91 3.18
363 364 2.955660 CCCAGGTTGTTGCTAAACTTGA 59.044 45.455 9.35 0.00 36.91 3.02
364 365 2.545742 GCCCAGGTTGTTGCTAAACTTG 60.546 50.000 3.12 3.12 37.19 3.16
365 366 1.686587 GCCCAGGTTGTTGCTAAACTT 59.313 47.619 0.00 0.00 37.19 2.66
366 367 1.328279 GCCCAGGTTGTTGCTAAACT 58.672 50.000 0.00 0.00 37.19 2.66
367 368 0.317160 GGCCCAGGTTGTTGCTAAAC 59.683 55.000 0.00 0.00 36.78 2.01
368 369 0.187361 AGGCCCAGGTTGTTGCTAAA 59.813 50.000 0.00 0.00 0.00 1.85
369 370 0.251165 GAGGCCCAGGTTGTTGCTAA 60.251 55.000 0.00 0.00 0.00 3.09
370 371 1.378762 GAGGCCCAGGTTGTTGCTA 59.621 57.895 0.00 0.00 0.00 3.49
371 372 2.085343 ATGAGGCCCAGGTTGTTGCT 62.085 55.000 0.00 0.00 0.00 3.91
372 373 1.187567 AATGAGGCCCAGGTTGTTGC 61.188 55.000 0.00 0.00 0.00 4.17
373 374 0.604578 CAATGAGGCCCAGGTTGTTG 59.395 55.000 0.00 0.00 0.00 3.33
374 375 0.188342 ACAATGAGGCCCAGGTTGTT 59.812 50.000 0.00 0.00 26.79 2.83
375 376 1.072266 TACAATGAGGCCCAGGTTGT 58.928 50.000 15.04 15.04 33.80 3.32
376 377 2.214376 TTACAATGAGGCCCAGGTTG 57.786 50.000 0.00 2.40 0.00 3.77
377 378 2.582636 AGATTACAATGAGGCCCAGGTT 59.417 45.455 0.00 0.00 0.00 3.50
378 379 2.092212 CAGATTACAATGAGGCCCAGGT 60.092 50.000 0.00 2.99 0.00 4.00
379 380 2.092212 ACAGATTACAATGAGGCCCAGG 60.092 50.000 0.00 0.00 0.00 4.45
380 381 3.209410 GACAGATTACAATGAGGCCCAG 58.791 50.000 0.00 0.00 0.00 4.45
381 382 2.575735 TGACAGATTACAATGAGGCCCA 59.424 45.455 0.00 0.00 0.00 5.36
382 383 3.281727 TGACAGATTACAATGAGGCCC 57.718 47.619 0.00 0.00 0.00 5.80
383 384 4.274459 GTCATGACAGATTACAATGAGGCC 59.726 45.833 21.07 0.00 0.00 5.19
384 385 5.121811 AGTCATGACAGATTACAATGAGGC 58.878 41.667 27.02 0.00 0.00 4.70
396 397 9.428097 GCATTCATGTTATATAGTCATGACAGA 57.572 33.333 27.02 15.06 44.60 3.41
397 398 8.378421 CGCATTCATGTTATATAGTCATGACAG 58.622 37.037 27.02 18.58 44.60 3.51
398 399 7.872483 ACGCATTCATGTTATATAGTCATGACA 59.128 33.333 27.02 13.67 44.60 3.58
399 400 8.244494 ACGCATTCATGTTATATAGTCATGAC 57.756 34.615 18.47 18.47 44.60 3.06
400 401 7.545615 GGACGCATTCATGTTATATAGTCATGA 59.454 37.037 19.54 19.54 43.71 3.07
401 402 7.201556 GGGACGCATTCATGTTATATAGTCATG 60.202 40.741 16.90 16.90 39.87 3.07
402 403 6.818644 GGGACGCATTCATGTTATATAGTCAT 59.181 38.462 0.00 0.00 0.00 3.06
403 404 6.014584 AGGGACGCATTCATGTTATATAGTCA 60.015 38.462 0.00 0.00 0.00 3.41
404 405 6.311445 CAGGGACGCATTCATGTTATATAGTC 59.689 42.308 0.00 0.00 0.00 2.59
405 406 6.166279 CAGGGACGCATTCATGTTATATAGT 58.834 40.000 0.00 0.00 0.00 2.12
406 407 5.063944 GCAGGGACGCATTCATGTTATATAG 59.936 44.000 0.00 0.00 0.00 1.31
407 408 4.935205 GCAGGGACGCATTCATGTTATATA 59.065 41.667 0.00 0.00 0.00 0.86
408 409 3.753272 GCAGGGACGCATTCATGTTATAT 59.247 43.478 0.00 0.00 0.00 0.86
409 410 3.138304 GCAGGGACGCATTCATGTTATA 58.862 45.455 0.00 0.00 0.00 0.98
410 411 1.949525 GCAGGGACGCATTCATGTTAT 59.050 47.619 0.00 0.00 0.00 1.89
411 412 1.378531 GCAGGGACGCATTCATGTTA 58.621 50.000 0.00 0.00 0.00 2.41
412 413 1.315257 GGCAGGGACGCATTCATGTT 61.315 55.000 0.00 0.00 0.00 2.71
413 414 1.750399 GGCAGGGACGCATTCATGT 60.750 57.895 0.00 0.00 0.00 3.21
414 415 2.827051 CGGCAGGGACGCATTCATG 61.827 63.158 0.00 0.00 0.00 3.07
415 416 2.514592 CGGCAGGGACGCATTCAT 60.515 61.111 0.00 0.00 0.00 2.57
416 417 3.247056 TTCGGCAGGGACGCATTCA 62.247 57.895 0.00 0.00 32.07 2.57
417 418 2.435938 TTCGGCAGGGACGCATTC 60.436 61.111 0.00 0.00 32.07 2.67
418 419 2.746277 GTTCGGCAGGGACGCATT 60.746 61.111 0.00 0.00 32.07 3.56
419 420 3.958147 CTGTTCGGCAGGGACGCAT 62.958 63.158 0.00 0.00 41.42 4.73
420 421 4.680237 CTGTTCGGCAGGGACGCA 62.680 66.667 0.00 0.00 41.42 5.24
422 423 2.572095 TATGCTGTTCGGCAGGGACG 62.572 60.000 11.89 0.00 45.75 4.79
423 424 1.090052 GTATGCTGTTCGGCAGGGAC 61.090 60.000 11.89 6.44 45.75 4.46
424 425 1.220749 GTATGCTGTTCGGCAGGGA 59.779 57.895 11.89 0.00 45.75 4.20
425 426 2.173669 CGTATGCTGTTCGGCAGGG 61.174 63.158 11.89 0.74 45.75 4.45
426 427 2.813179 GCGTATGCTGTTCGGCAGG 61.813 63.158 11.89 5.39 45.75 4.85
427 428 2.703409 GCGTATGCTGTTCGGCAG 59.297 61.111 11.89 3.99 45.75 4.85
437 438 1.135139 TGAGAGGTGAGAAGCGTATGC 59.865 52.381 0.00 0.00 43.24 3.14
438 439 3.724508 ATGAGAGGTGAGAAGCGTATG 57.275 47.619 0.00 0.00 0.00 2.39
439 440 3.957497 AGAATGAGAGGTGAGAAGCGTAT 59.043 43.478 0.00 0.00 0.00 3.06
440 441 3.357203 AGAATGAGAGGTGAGAAGCGTA 58.643 45.455 0.00 0.00 0.00 4.42
441 442 2.175202 AGAATGAGAGGTGAGAAGCGT 58.825 47.619 0.00 0.00 0.00 5.07
442 443 2.957491 AGAATGAGAGGTGAGAAGCG 57.043 50.000 0.00 0.00 0.00 4.68
443 444 4.391523 GTGAAAGAATGAGAGGTGAGAAGC 59.608 45.833 0.00 0.00 0.00 3.86
444 445 4.934602 GGTGAAAGAATGAGAGGTGAGAAG 59.065 45.833 0.00 0.00 0.00 2.85
445 446 4.263068 GGGTGAAAGAATGAGAGGTGAGAA 60.263 45.833 0.00 0.00 0.00 2.87
446 447 3.261897 GGGTGAAAGAATGAGAGGTGAGA 59.738 47.826 0.00 0.00 0.00 3.27
447 448 3.262915 AGGGTGAAAGAATGAGAGGTGAG 59.737 47.826 0.00 0.00 0.00 3.51
448 449 3.008375 CAGGGTGAAAGAATGAGAGGTGA 59.992 47.826 0.00 0.00 0.00 4.02
449 450 3.341823 CAGGGTGAAAGAATGAGAGGTG 58.658 50.000 0.00 0.00 0.00 4.00
450 451 2.290577 GCAGGGTGAAAGAATGAGAGGT 60.291 50.000 0.00 0.00 0.00 3.85
451 452 2.290514 TGCAGGGTGAAAGAATGAGAGG 60.291 50.000 0.00 0.00 0.00 3.69
452 453 3.008330 CTGCAGGGTGAAAGAATGAGAG 58.992 50.000 5.57 0.00 0.00 3.20
453 454 2.877300 GCTGCAGGGTGAAAGAATGAGA 60.877 50.000 17.12 0.00 0.00 3.27
454 455 1.471684 GCTGCAGGGTGAAAGAATGAG 59.528 52.381 17.12 0.00 0.00 2.90
455 456 1.202915 TGCTGCAGGGTGAAAGAATGA 60.203 47.619 17.12 0.00 0.00 2.57
456 457 1.068055 GTGCTGCAGGGTGAAAGAATG 60.068 52.381 17.12 0.00 0.00 2.67
457 458 1.251251 GTGCTGCAGGGTGAAAGAAT 58.749 50.000 17.12 0.00 0.00 2.40
458 459 0.106769 TGTGCTGCAGGGTGAAAGAA 60.107 50.000 17.12 0.00 0.00 2.52
459 460 0.535780 CTGTGCTGCAGGGTGAAAGA 60.536 55.000 17.12 0.00 41.42 2.52
460 461 1.954528 CTGTGCTGCAGGGTGAAAG 59.045 57.895 17.12 0.00 41.42 2.62
461 462 4.162592 CTGTGCTGCAGGGTGAAA 57.837 55.556 17.12 0.00 41.42 2.69
469 470 2.666190 GGCGAAGACTGTGCTGCA 60.666 61.111 0.00 0.00 0.00 4.41
470 471 3.782244 CGGCGAAGACTGTGCTGC 61.782 66.667 0.00 0.00 0.00 5.25
471 472 1.956170 AACGGCGAAGACTGTGCTG 60.956 57.895 16.62 6.49 40.79 4.41
472 473 1.956170 CAACGGCGAAGACTGTGCT 60.956 57.895 16.62 0.00 0.00 4.40
473 474 1.495584 TTCAACGGCGAAGACTGTGC 61.496 55.000 16.62 0.00 0.00 4.57
474 475 0.232303 GTTCAACGGCGAAGACTGTG 59.768 55.000 16.62 0.00 0.00 3.66
475 476 0.104304 AGTTCAACGGCGAAGACTGT 59.896 50.000 16.62 0.00 0.00 3.55
476 477 0.784778 GAGTTCAACGGCGAAGACTG 59.215 55.000 16.62 2.53 0.00 3.51
477 478 0.674534 AGAGTTCAACGGCGAAGACT 59.325 50.000 16.62 11.72 0.00 3.24
478 479 1.192534 CAAGAGTTCAACGGCGAAGAC 59.807 52.381 16.62 6.62 0.00 3.01
479 480 1.067974 TCAAGAGTTCAACGGCGAAGA 59.932 47.619 16.62 8.07 0.00 2.87
480 481 1.497991 TCAAGAGTTCAACGGCGAAG 58.502 50.000 16.62 5.29 0.00 3.79
481 482 1.942677 TTCAAGAGTTCAACGGCGAA 58.057 45.000 16.62 0.00 0.00 4.70
482 483 2.163818 ATTCAAGAGTTCAACGGCGA 57.836 45.000 16.62 0.00 0.00 5.54
483 484 3.250744 TCTATTCAAGAGTTCAACGGCG 58.749 45.455 4.80 4.80 0.00 6.46
484 485 5.006165 CAGATCTATTCAAGAGTTCAACGGC 59.994 44.000 0.00 0.00 37.74 5.68
485 486 6.333416 TCAGATCTATTCAAGAGTTCAACGG 58.667 40.000 0.00 0.00 37.74 4.44
486 487 6.475076 CCTCAGATCTATTCAAGAGTTCAACG 59.525 42.308 0.00 0.00 37.74 4.10
487 488 6.257630 GCCTCAGATCTATTCAAGAGTTCAAC 59.742 42.308 0.00 0.00 37.74 3.18
488 489 6.070596 TGCCTCAGATCTATTCAAGAGTTCAA 60.071 38.462 0.00 0.00 37.74 2.69
489 490 5.423290 TGCCTCAGATCTATTCAAGAGTTCA 59.577 40.000 0.00 0.00 37.74 3.18
490 491 5.911752 TGCCTCAGATCTATTCAAGAGTTC 58.088 41.667 0.00 0.00 37.74 3.01
491 492 5.946942 TGCCTCAGATCTATTCAAGAGTT 57.053 39.130 0.00 0.00 37.74 3.01
492 493 5.424895 AGTTGCCTCAGATCTATTCAAGAGT 59.575 40.000 0.00 0.00 37.74 3.24
493 494 5.754406 CAGTTGCCTCAGATCTATTCAAGAG 59.246 44.000 0.00 0.00 37.74 2.85
494 495 5.423290 TCAGTTGCCTCAGATCTATTCAAGA 59.577 40.000 0.00 0.00 39.02 3.02
495 496 5.523188 GTCAGTTGCCTCAGATCTATTCAAG 59.477 44.000 0.00 0.00 0.00 3.02
496 497 5.046376 TGTCAGTTGCCTCAGATCTATTCAA 60.046 40.000 0.00 0.00 0.00 2.69
497 498 4.467438 TGTCAGTTGCCTCAGATCTATTCA 59.533 41.667 0.00 0.00 0.00 2.57
498 499 5.016051 TGTCAGTTGCCTCAGATCTATTC 57.984 43.478 0.00 0.00 0.00 1.75
499 500 5.129980 TGATGTCAGTTGCCTCAGATCTATT 59.870 40.000 0.00 0.00 0.00 1.73
500 501 4.652881 TGATGTCAGTTGCCTCAGATCTAT 59.347 41.667 0.00 0.00 0.00 1.98
501 502 4.026052 TGATGTCAGTTGCCTCAGATCTA 58.974 43.478 0.00 0.00 0.00 1.98
502 503 2.836372 TGATGTCAGTTGCCTCAGATCT 59.164 45.455 0.00 0.00 0.00 2.75
503 504 3.257469 TGATGTCAGTTGCCTCAGATC 57.743 47.619 0.00 0.00 0.00 2.75
504 505 3.708403 TTGATGTCAGTTGCCTCAGAT 57.292 42.857 0.00 0.00 0.00 2.90
505 506 3.490439 TTTGATGTCAGTTGCCTCAGA 57.510 42.857 0.00 0.00 0.00 3.27
506 507 4.008330 AGATTTGATGTCAGTTGCCTCAG 58.992 43.478 0.00 0.00 0.00 3.35
507 508 4.005650 GAGATTTGATGTCAGTTGCCTCA 58.994 43.478 0.00 0.00 0.00 3.86
508 509 3.063180 CGAGATTTGATGTCAGTTGCCTC 59.937 47.826 0.00 0.00 0.00 4.70
509 510 3.005554 CGAGATTTGATGTCAGTTGCCT 58.994 45.455 0.00 0.00 0.00 4.75
510 511 2.476854 GCGAGATTTGATGTCAGTTGCC 60.477 50.000 0.00 0.00 0.00 4.52
541 542 0.509499 TTAGGCTTTTTCGTCGTGCG 59.491 50.000 0.00 0.00 43.01 5.34
555 556 2.311688 TTAGGGCAGCGAGCTTAGGC 62.312 60.000 0.00 0.00 44.79 3.93
556 557 0.249657 CTTAGGGCAGCGAGCTTAGG 60.250 60.000 0.00 0.00 44.79 2.69
576 577 1.084289 GCGTAAATTCCTGCCGTCTT 58.916 50.000 0.00 0.00 0.00 3.01
610 611 1.135083 AGTTCGGCAATCTGGACGTAG 60.135 52.381 0.00 0.00 41.04 3.51
611 612 0.892755 AGTTCGGCAATCTGGACGTA 59.107 50.000 0.00 0.00 41.04 3.57
612 613 0.034896 AAGTTCGGCAATCTGGACGT 59.965 50.000 0.00 0.00 41.04 4.34
613 614 0.443869 CAAGTTCGGCAATCTGGACG 59.556 55.000 0.00 0.00 41.81 4.79
614 615 1.734465 CTCAAGTTCGGCAATCTGGAC 59.266 52.381 0.00 0.00 0.00 4.02
624 625 1.066303 CTCGATCCTCCTCAAGTTCGG 59.934 57.143 0.00 0.00 32.49 4.30
644 645 8.235359 TCTAACTATACAGGCTCTTTCTAACC 57.765 38.462 0.00 0.00 0.00 2.85
647 648 7.061054 TGCTCTAACTATACAGGCTCTTTCTA 58.939 38.462 0.00 0.00 0.00 2.10
648 649 5.894393 TGCTCTAACTATACAGGCTCTTTCT 59.106 40.000 0.00 0.00 0.00 2.52
649 650 6.150396 TGCTCTAACTATACAGGCTCTTTC 57.850 41.667 0.00 0.00 0.00 2.62
653 654 5.975693 AGATGCTCTAACTATACAGGCTC 57.024 43.478 0.00 0.00 0.00 4.70
661 662 3.508012 CCGGCTGTAGATGCTCTAACTAT 59.492 47.826 0.00 0.00 29.58 2.12
683 684 3.203716 GGGTCATCGGATTTACCAAGTC 58.796 50.000 16.96 1.49 38.90 3.01
690 691 2.917933 CAAGCTGGGTCATCGGATTTA 58.082 47.619 0.00 0.00 0.00 1.40
702 703 0.171903 CGGAATCTTTGCAAGCTGGG 59.828 55.000 0.00 0.00 0.00 4.45
728 729 5.010719 CCTATTTTCTACGGCACCAGAGATA 59.989 44.000 0.00 0.00 0.00 1.98
729 730 3.914426 ATTTTCTACGGCACCAGAGAT 57.086 42.857 0.00 0.00 0.00 2.75
730 731 3.132289 CCTATTTTCTACGGCACCAGAGA 59.868 47.826 0.00 0.00 0.00 3.10
787 790 3.193267 TGGTTTTCCATCAGCTACATTGC 59.807 43.478 0.00 0.00 46.22 3.56
852 863 5.422012 AGACCAGTTTTGTGGAGTGAAAATT 59.578 36.000 0.00 0.00 40.44 1.82
892 905 2.438800 ACGGCTCAGGTAGTGTAGAT 57.561 50.000 0.00 0.00 0.00 1.98
894 907 4.421948 CTTTTACGGCTCAGGTAGTGTAG 58.578 47.826 0.00 0.00 0.00 2.74
947 967 6.321690 ACATTCTGTACTACCATCTGGAGTAC 59.678 42.308 20.46 20.46 42.50 2.73
950 970 5.860941 ACATTCTGTACTACCATCTGGAG 57.139 43.478 2.55 0.00 38.94 3.86
966 987 6.484643 CGGAGGTTTGATATGATGAACATTCT 59.515 38.462 0.00 0.00 40.07 2.40
1041 1127 5.109210 TCAAGCAGGACAATAGACATAACG 58.891 41.667 0.00 0.00 0.00 3.18
1071 1157 4.576873 AGAGAGACGACATCGACATACATT 59.423 41.667 8.54 0.00 43.02 2.71
1089 1175 1.892819 ATGGGTGCACCGACAGAGAG 61.893 60.000 29.08 0.00 44.64 3.20
1101 1187 3.589881 GCGCTGATCCATGGGTGC 61.590 66.667 13.02 10.24 0.00 5.01
1121 1207 0.627986 AATGGAGCCTAAGCAGCCTT 59.372 50.000 0.00 0.00 43.56 4.35
1161 1247 1.337447 GGTGTTGCTGCAATGCTGAAT 60.337 47.619 19.11 0.00 0.00 2.57
1246 1332 7.043961 ACAGATATGAAGTCGCTGAGATAAA 57.956 36.000 0.00 0.00 0.00 1.40
1281 1367 0.328926 TGCATGAGCTTGTGGATCCA 59.671 50.000 11.44 11.44 42.74 3.41
1441 1529 3.821033 ACCATTGCTTAACAACAGAGGTC 59.179 43.478 0.00 0.00 42.27 3.85
1444 1532 6.823689 ACCTATACCATTGCTTAACAACAGAG 59.176 38.462 0.00 0.00 42.27 3.35
1453 1541 8.202137 GTGAGTTCTAACCTATACCATTGCTTA 58.798 37.037 0.00 0.00 0.00 3.09
1542 1634 6.587990 CGAGATGTGAGTGAAAGTACATTTCT 59.412 38.462 14.65 4.92 46.34 2.52
1598 1692 3.982058 GCCGAAAGAATACCATACTCGAG 59.018 47.826 11.84 11.84 0.00 4.04
1646 1740 2.880890 GACAGATGTGTTCAGCTTTGGT 59.119 45.455 0.00 0.00 38.31 3.67
1839 2350 5.211973 TGAGTTCAGATATAGCAGAAGGGT 58.788 41.667 0.00 0.00 0.00 4.34
2132 2648 5.596836 TTTCACCTGATTCTTTGTTGCTT 57.403 34.783 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.