Multiple sequence alignment - TraesCS5D01G186200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G186200 chr5D 100.000 7509 0 0 1 7509 288186463 288178955 0.000000e+00 13867.0
1 TraesCS5D01G186200 chr5B 93.903 6544 257 67 1 6441 327610704 327604200 0.000000e+00 9744.0
2 TraesCS5D01G186200 chr5B 85.797 521 30 7 6845 7321 327603817 327603297 5.200000e-141 512.0
3 TraesCS5D01G186200 chr5B 90.789 380 20 9 7145 7509 327603290 327602911 1.880000e-135 494.0
4 TraesCS5D01G186200 chr5B 92.308 169 11 2 6470 6637 327604083 327603916 9.740000e-59 239.0
5 TraesCS5D01G186200 chr5B 90.196 51 3 1 423 473 327610358 327610310 1.750000e-06 65.8
6 TraesCS5D01G186200 chr5A 95.499 4332 139 31 2150 6440 381370342 381366026 0.000000e+00 6868.0
7 TraesCS5D01G186200 chr5A 89.116 1911 99 47 311 2149 381372246 381370373 0.000000e+00 2276.0
8 TraesCS5D01G186200 chr5A 95.129 349 16 1 1 349 381372592 381372245 3.960000e-152 549.0
9 TraesCS5D01G186200 chr5A 92.157 51 2 1 423 473 381372209 381372161 3.760000e-08 71.3
10 TraesCS5D01G186200 chr6D 79.167 1008 198 11 4063 5064 219792953 219793954 0.000000e+00 688.0
11 TraesCS5D01G186200 chr6A 79.217 996 195 11 4075 5064 282130452 282129463 0.000000e+00 682.0
12 TraesCS5D01G186200 chr6A 92.969 128 8 1 6847 6973 135052542 135052669 1.290000e-42 185.0
13 TraesCS5D01G186200 chr3B 83.700 227 37 0 2979 3205 532934175 532933949 1.640000e-51 215.0
14 TraesCS5D01G186200 chr1B 92.593 135 8 2 6846 6978 314737696 314737562 7.690000e-45 193.0
15 TraesCS5D01G186200 chr3A 91.473 129 10 1 6846 6973 732473097 732472969 7.740000e-40 176.0
16 TraesCS5D01G186200 chr2B 91.406 128 10 1 6847 6973 16839483 16839610 2.790000e-39 174.0
17 TraesCS5D01G186200 chr1A 90.840 131 10 2 6848 6977 100688893 100688764 2.790000e-39 174.0
18 TraesCS5D01G186200 chr7A 91.339 127 10 1 6847 6972 393486896 393486770 1.000000e-38 172.0
19 TraesCS5D01G186200 chr2A 91.270 126 10 1 6849 6973 682545627 682545502 3.600000e-38 171.0
20 TraesCS5D01G186200 chr7B 90.625 128 11 1 6847 6973 658317879 658317752 1.300000e-37 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G186200 chr5D 288178955 288186463 7508 True 13867.000 13867 100.00000 1 7509 1 chr5D.!!$R1 7508
1 TraesCS5D01G186200 chr5B 327602911 327610704 7793 True 2210.960 9744 90.59860 1 7509 5 chr5B.!!$R1 7508
2 TraesCS5D01G186200 chr5A 381366026 381372592 6566 True 2441.075 6868 92.97525 1 6440 4 chr5A.!!$R1 6439
3 TraesCS5D01G186200 chr6D 219792953 219793954 1001 False 688.000 688 79.16700 4063 5064 1 chr6D.!!$F1 1001
4 TraesCS5D01G186200 chr6A 282129463 282130452 989 True 682.000 682 79.21700 4075 5064 1 chr6A.!!$R1 989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 668 2.297315 TGTTGCTAGGTCTCAGTCACTG 59.703 50.000 0.00 0.00 0.00 3.66 F
2190 2353 0.108945 GTTGCTGGCTGGCTTGATTC 60.109 55.000 2.00 0.00 0.00 2.52 F
2381 2554 1.004745 ACAAGTTTGGATCCTGGCGAT 59.995 47.619 14.23 0.00 0.00 4.58 F
3239 3412 0.108615 GCCTCGTGATACTGTGCAGT 60.109 55.000 9.90 9.90 45.02 4.40 F
4409 4617 0.622665 AGGTTATTGCTGAGCTGCCT 59.377 50.000 5.83 3.13 0.00 4.75 F
5091 5299 0.820226 TCCTTGCTCTCATCGACCAG 59.180 55.000 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 2602 0.473755 TCTGCACTTCCTCAGCCAAA 59.526 50.0 0.00 0.00 0.00 3.28 R
3220 3393 0.108615 ACTGCACAGTATCACGAGGC 60.109 55.0 0.35 0.00 40.43 4.70 R
3395 3599 0.320697 AGCAGACGTCCCTTGTAACC 59.679 55.0 13.01 0.00 0.00 2.85 R
5085 5293 0.741221 GTTTCCTAGCCTGCTGGTCG 60.741 60.0 11.69 0.21 35.27 4.79 R
5444 5657 0.475475 TGGATGGCCTGCTTCCTATG 59.525 55.0 3.32 0.00 34.31 2.23 R
6684 7034 0.034089 ATACCCTTTGCCCACAGAGC 60.034 55.0 0.00 0.00 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.278957 CCTTGCTAGTTGGTTGCAAAAGTAT 60.279 40.000 0.00 0.00 44.49 2.12
55 56 9.502091 TGCAAAAGTATGAGTTATTACTTGACT 57.498 29.630 0.00 0.00 33.84 3.41
56 57 9.760660 GCAAAAGTATGAGTTATTACTTGACTG 57.239 33.333 0.00 0.00 33.84 3.51
138 139 8.589701 ACCAAGAAATTATTAACCCTAGTTGG 57.410 34.615 0.00 0.00 36.68 3.77
353 391 8.762645 ACAGATACAATTATGAAGAGACTTGGA 58.237 33.333 0.00 0.00 0.00 3.53
354 392 9.775854 CAGATACAATTATGAAGAGACTTGGAT 57.224 33.333 0.00 0.00 0.00 3.41
355 393 9.995003 AGATACAATTATGAAGAGACTTGGATC 57.005 33.333 0.00 0.00 35.24 3.36
356 394 9.995003 GATACAATTATGAAGAGACTTGGATCT 57.005 33.333 0.00 0.00 33.25 2.75
376 429 7.894364 TGGATCTATTGTAATAGTACTCCCTCC 59.106 40.741 0.00 2.15 39.47 4.30
473 531 9.145442 GGTTCTAAATAGTACTCCCTCTGTAAT 57.855 37.037 0.00 0.00 0.00 1.89
522 581 5.308825 AGAGTACATCTTTTGGTGACCTTG 58.691 41.667 2.11 0.00 32.99 3.61
546 605 3.040147 TCTAAACCTTCAACTGGAGCG 57.960 47.619 0.00 0.00 0.00 5.03
584 643 9.268268 TGTACTCCATCCGATTCATATTAAAAC 57.732 33.333 0.00 0.00 0.00 2.43
585 644 9.268268 GTACTCCATCCGATTCATATTAAAACA 57.732 33.333 0.00 0.00 0.00 2.83
591 650 9.787532 CATCCGATTCATATTAAAACAAGTGTT 57.212 29.630 0.00 0.00 40.50 3.32
606 665 2.598565 AGTGTTGCTAGGTCTCAGTCA 58.401 47.619 0.00 0.00 0.00 3.41
607 666 2.297597 AGTGTTGCTAGGTCTCAGTCAC 59.702 50.000 0.00 0.00 0.00 3.67
608 667 2.297597 GTGTTGCTAGGTCTCAGTCACT 59.702 50.000 0.00 0.00 0.00 3.41
609 668 2.297315 TGTTGCTAGGTCTCAGTCACTG 59.703 50.000 0.00 0.00 0.00 3.66
626 697 8.316946 TCAGTCACTGAGATTTAATCAAGTGAT 58.683 33.333 29.03 20.71 46.95 3.06
695 767 5.622460 GCACGGATCTTAATGTAGGATCGAT 60.622 44.000 0.00 0.00 40.89 3.59
697 769 7.535997 CACGGATCTTAATGTAGGATCGATTA 58.464 38.462 0.00 0.00 40.89 1.75
883 957 3.187637 TCGAAATCCAAATCACGAACACC 59.812 43.478 0.00 0.00 0.00 4.16
1117 1198 4.011517 TCGGGTCCGGTCAAAGCC 62.012 66.667 9.68 0.00 40.25 4.35
1485 1580 2.033194 CGGAGCGGGGTTGACTTTC 61.033 63.158 0.00 0.00 0.00 2.62
1570 1665 1.174712 TGCCCAGCTGCTCAGTTTTC 61.175 55.000 8.66 0.00 0.00 2.29
1652 1748 4.268884 GGAGCACTGCTTTAATTAGTCGAG 59.731 45.833 4.67 0.00 39.88 4.04
1663 1759 7.408756 TTTAATTAGTCGAGCTGGGTTACTA 57.591 36.000 0.00 0.00 0.00 1.82
1710 1806 0.666577 CCTGACTTCGTCCGTGGAAC 60.667 60.000 0.00 0.00 0.00 3.62
1866 1991 9.337396 AGATGACAGTGTTATCTCTTAGTCTAG 57.663 37.037 21.50 0.00 34.51 2.43
1907 2039 1.132643 ACTGTCGAGACAACGGATAGC 59.867 52.381 7.38 0.00 41.33 2.97
1956 2088 7.012610 TGGAAGTGCTGATCATATTTACATGTG 59.987 37.037 9.11 0.00 0.00 3.21
2023 2155 5.696724 AGACTGTTCTTCCATCTTGTTTACG 59.303 40.000 0.00 0.00 0.00 3.18
2059 2192 3.118629 GCCTGAGTCCACACAAGATATGA 60.119 47.826 0.00 0.00 0.00 2.15
2130 2263 5.622770 ACGTCTTGACTTTTGTTGACTTT 57.377 34.783 0.00 0.00 0.00 2.66
2180 2343 6.461509 GCATATAAACAATTAGGTTGCTGGCT 60.462 38.462 0.00 0.00 41.69 4.75
2190 2353 0.108945 GTTGCTGGCTGGCTTGATTC 60.109 55.000 2.00 0.00 0.00 2.52
2232 2396 5.360714 TGCCAATTGATTAAGAAGACATCCC 59.639 40.000 7.12 0.00 0.00 3.85
2233 2397 5.595952 GCCAATTGATTAAGAAGACATCCCT 59.404 40.000 7.12 0.00 0.00 4.20
2381 2554 1.004745 ACAAGTTTGGATCCTGGCGAT 59.995 47.619 14.23 0.00 0.00 4.58
2393 2566 3.995199 TCCTGGCGATTCTATTGTGATC 58.005 45.455 0.00 0.00 0.00 2.92
2429 2602 2.899256 ACACATGCTTAACTTGGCCAAT 59.101 40.909 20.85 7.87 0.00 3.16
2465 2638 1.271934 CAGATCGCATACAGGAGGAGG 59.728 57.143 0.00 0.00 0.00 4.30
2684 2857 2.866762 GCATTCGAGGTTAGTTAGCCAG 59.133 50.000 0.00 0.00 0.00 4.85
2875 3048 5.653507 TCCTTATGTTGATTTTCATGCTGC 58.346 37.500 0.00 0.00 0.00 5.25
2877 3050 5.518847 CCTTATGTTGATTTTCATGCTGCTG 59.481 40.000 0.00 0.00 0.00 4.41
2896 3069 3.747193 CTGCTAAGGCACATTGTTAACG 58.253 45.455 0.26 0.00 44.28 3.18
2930 3103 5.046304 AGTCACAGTAGCCTTACAACATCAT 60.046 40.000 0.00 0.00 31.96 2.45
2931 3104 5.643777 GTCACAGTAGCCTTACAACATCATT 59.356 40.000 0.00 0.00 31.96 2.57
2932 3105 6.816640 GTCACAGTAGCCTTACAACATCATTA 59.183 38.462 0.00 0.00 31.96 1.90
2933 3106 6.816640 TCACAGTAGCCTTACAACATCATTAC 59.183 38.462 0.00 0.00 31.96 1.89
2934 3107 6.037172 CACAGTAGCCTTACAACATCATTACC 59.963 42.308 0.00 0.00 31.96 2.85
2935 3108 5.234329 CAGTAGCCTTACAACATCATTACCG 59.766 44.000 0.00 0.00 31.96 4.02
2937 3110 4.585879 AGCCTTACAACATCATTACCGTT 58.414 39.130 0.00 0.00 0.00 4.44
2938 3111 4.394920 AGCCTTACAACATCATTACCGTTG 59.605 41.667 0.00 0.00 44.38 4.10
2939 3112 4.393680 GCCTTACAACATCATTACCGTTGA 59.606 41.667 8.37 0.00 42.03 3.18
2940 3113 5.447279 GCCTTACAACATCATTACCGTTGAG 60.447 44.000 8.37 0.00 42.03 3.02
2941 3114 5.872617 CCTTACAACATCATTACCGTTGAGA 59.127 40.000 8.37 0.00 42.03 3.27
2943 3116 7.254455 CCTTACAACATCATTACCGTTGAGATC 60.254 40.741 8.37 0.00 42.03 2.75
2944 3117 5.487433 ACAACATCATTACCGTTGAGATCA 58.513 37.500 8.37 0.00 42.03 2.92
3171 3344 7.487822 TCCTTATAATGCTCCTCTTATCCAG 57.512 40.000 0.00 0.00 0.00 3.86
3220 3393 3.055602 TGATGGTGAGTGGAATCTCTGTG 60.056 47.826 0.00 0.00 35.68 3.66
3239 3412 0.108615 GCCTCGTGATACTGTGCAGT 60.109 55.000 9.90 9.90 45.02 4.40
3252 3425 5.405935 ACTGTGCAGTGTACATCTATGAA 57.594 39.130 14.74 0.00 40.75 2.57
3288 3491 6.872020 TCTGTTAGGTGCTACATTTTCTGTAC 59.128 38.462 0.00 0.00 39.39 2.90
3310 3513 4.523173 ACCTGGTCATATCATGGTACTACG 59.477 45.833 0.00 0.00 0.00 3.51
3325 3528 9.175312 CATGGTACTACGTAGAACTATGGATAT 57.825 37.037 28.74 4.46 0.00 1.63
3326 3529 8.557592 TGGTACTACGTAGAACTATGGATATG 57.442 38.462 28.74 0.00 0.00 1.78
3338 3542 9.646522 AGAACTATGGATATGGCAACTATTTTT 57.353 29.630 0.00 0.00 37.61 1.94
3395 3599 3.692257 AATCCAAGAGTGACACCAGAG 57.308 47.619 0.84 0.00 0.00 3.35
3487 3691 7.192232 GATCTCATGTTTGAGGTAGAAATTGC 58.808 38.462 3.35 0.00 43.54 3.56
3575 3780 1.328680 GTTGTCTATGTGGCGATGCAG 59.671 52.381 0.00 0.00 0.00 4.41
3694 3900 2.588925 AATAGTAGGCCAGACCCCTT 57.411 50.000 5.01 0.00 40.58 3.95
3703 3909 1.573108 CCAGACCCCTTCAAGAGCTA 58.427 55.000 0.00 0.00 0.00 3.32
3721 3927 6.712276 AGAGCTATAAAAAGGCAGTAACAGT 58.288 36.000 0.00 0.00 0.00 3.55
3966 4174 7.168219 ACAAATCTTGAGCAGGTTGAGTAATA 58.832 34.615 0.00 0.00 0.00 0.98
3971 4179 7.946207 TCTTGAGCAGGTTGAGTAATATCTAG 58.054 38.462 0.00 0.00 0.00 2.43
3972 4180 7.561722 TCTTGAGCAGGTTGAGTAATATCTAGT 59.438 37.037 0.00 0.00 0.00 2.57
3973 4181 7.043961 TGAGCAGGTTGAGTAATATCTAGTG 57.956 40.000 0.00 0.00 0.00 2.74
3974 4182 6.607600 TGAGCAGGTTGAGTAATATCTAGTGT 59.392 38.462 0.00 0.00 0.00 3.55
3975 4183 7.045126 AGCAGGTTGAGTAATATCTAGTGTC 57.955 40.000 0.00 0.00 0.00 3.67
3976 4184 6.836527 AGCAGGTTGAGTAATATCTAGTGTCT 59.163 38.462 0.00 0.00 0.00 3.41
3977 4185 7.999545 AGCAGGTTGAGTAATATCTAGTGTCTA 59.000 37.037 0.00 0.00 0.00 2.59
3978 4186 8.077386 GCAGGTTGAGTAATATCTAGTGTCTAC 58.923 40.741 0.00 0.00 0.00 2.59
4040 4248 7.553881 AATATGTTTGGTAGAGAAATGGTCG 57.446 36.000 0.00 0.00 0.00 4.79
4409 4617 0.622665 AGGTTATTGCTGAGCTGCCT 59.377 50.000 5.83 3.13 0.00 4.75
4436 4644 7.201812 GGTGACAATTTTGGAGCATATGTCATA 60.202 37.037 4.29 0.00 44.94 2.15
4541 4749 1.479389 CCCCTGTTTGAGAAGTTGGCT 60.479 52.381 0.00 0.00 0.00 4.75
5085 5293 4.187694 CCTTGTAAGTCCTTGCTCTCATC 58.812 47.826 0.00 0.00 0.00 2.92
5091 5299 0.820226 TCCTTGCTCTCATCGACCAG 59.180 55.000 0.00 0.00 0.00 4.00
5245 5455 5.185454 TGAATTGTGATAGCACTTAGGGTG 58.815 41.667 13.05 0.00 45.36 4.61
5270 5480 6.074142 GCCTTCTTTTGCAACTGTAATTTCTG 60.074 38.462 0.00 0.00 0.00 3.02
5444 5657 3.133721 AGACAGAGTATGGCAGGATGAAC 59.866 47.826 0.00 0.00 40.68 3.18
5738 5951 1.484240 CTCCTAGTTTCAGAGGGGCTG 59.516 57.143 0.00 0.00 46.31 4.85
5819 6032 4.731480 CAGGTTTGTGTTACTAAAACGCAC 59.269 41.667 3.77 0.00 39.97 5.34
5922 6141 3.507162 TCTTGATTTCAGGTTGCTGGA 57.493 42.857 0.00 0.00 0.00 3.86
6123 6342 0.457509 CTGAGCTCGTGACGCTGAAT 60.458 55.000 9.64 0.00 37.96 2.57
6268 6488 9.396022 TGTACCTTGATGAGATATTTTTCCTTC 57.604 33.333 0.00 0.00 0.00 3.46
6361 6581 6.907212 GGAATAATGTCATTTCGCAAGTAGTG 59.093 38.462 2.79 0.00 39.48 2.74
6449 6764 5.710099 CACTTAACAATGTACTGGATTGGGT 59.290 40.000 8.71 0.82 35.48 4.51
6450 6765 5.710099 ACTTAACAATGTACTGGATTGGGTG 59.290 40.000 8.71 0.94 35.48 4.61
6457 6772 4.013728 TGTACTGGATTGGGTGTTTATGC 58.986 43.478 0.00 0.00 0.00 3.14
6458 6773 3.168035 ACTGGATTGGGTGTTTATGCA 57.832 42.857 0.00 0.00 0.00 3.96
6462 6777 3.088532 GGATTGGGTGTTTATGCAGTGA 58.911 45.455 0.00 0.00 0.00 3.41
6463 6778 3.509575 GGATTGGGTGTTTATGCAGTGAA 59.490 43.478 0.00 0.00 0.00 3.18
6464 6779 4.485163 GATTGGGTGTTTATGCAGTGAAC 58.515 43.478 0.00 0.00 0.00 3.18
6465 6780 3.222173 TGGGTGTTTATGCAGTGAACT 57.778 42.857 0.00 0.00 0.00 3.01
6466 6781 2.884012 TGGGTGTTTATGCAGTGAACTG 59.116 45.455 6.08 6.08 46.40 3.16
6467 6782 2.884639 GGGTGTTTATGCAGTGAACTGT 59.115 45.455 11.87 0.00 45.45 3.55
6468 6783 3.317993 GGGTGTTTATGCAGTGAACTGTT 59.682 43.478 11.87 0.00 45.45 3.16
6514 6829 1.484038 TTCTTGCTTGTGGTGCCTTT 58.516 45.000 0.00 0.00 0.00 3.11
6519 6834 0.877213 GCTTGTGGTGCCTTTGCTTG 60.877 55.000 0.00 0.00 38.71 4.01
6531 6846 5.123820 GTGCCTTTGCTTGAATCAGTGTATA 59.876 40.000 0.00 0.00 38.71 1.47
6532 6847 5.355071 TGCCTTTGCTTGAATCAGTGTATAG 59.645 40.000 0.00 0.00 38.71 1.31
6559 6874 2.132740 TGCTTGTTGCGGTTGAAATC 57.867 45.000 0.00 0.00 46.63 2.17
6560 6875 1.269517 TGCTTGTTGCGGTTGAAATCC 60.270 47.619 0.00 0.00 46.63 3.01
6566 6881 0.960364 TGCGGTTGAAATCCCAGCTC 60.960 55.000 0.00 0.00 0.00 4.09
6629 6944 8.169977 TCTATTTAGAAGGCATGCAATAAAGG 57.830 34.615 21.36 13.45 0.00 3.11
6630 6945 6.796785 ATTTAGAAGGCATGCAATAAAGGT 57.203 33.333 21.36 2.45 0.00 3.50
6631 6946 5.581126 TTAGAAGGCATGCAATAAAGGTG 57.419 39.130 21.36 0.00 0.00 4.00
6632 6947 2.167075 AGAAGGCATGCAATAAAGGTGC 59.833 45.455 21.36 0.00 42.55 5.01
6642 6957 5.347342 TGCAATAAAGGTGCATTTAATCGG 58.653 37.500 0.00 0.00 46.76 4.18
6643 6958 5.105554 TGCAATAAAGGTGCATTTAATCGGT 60.106 36.000 0.00 0.00 46.76 4.69
6645 6960 6.237808 GCAATAAAGGTGCATTTAATCGGTTG 60.238 38.462 0.00 0.00 41.80 3.77
6666 7016 2.751259 GTTGAATGAGCTGGATTGCAGA 59.249 45.455 9.62 0.00 34.99 4.26
6684 7034 1.220236 AGAGGGAAGAGGAGATGGAGG 59.780 57.143 0.00 0.00 0.00 4.30
6685 7035 0.399806 AGGGAAGAGGAGATGGAGGC 60.400 60.000 0.00 0.00 0.00 4.70
6686 7036 0.399806 GGGAAGAGGAGATGGAGGCT 60.400 60.000 0.00 0.00 0.00 4.58
6687 7037 1.047801 GGAAGAGGAGATGGAGGCTC 58.952 60.000 5.78 5.78 0.00 4.70
6688 7038 1.412937 GGAAGAGGAGATGGAGGCTCT 60.413 57.143 15.23 0.00 32.98 4.09
6689 7039 1.688197 GAAGAGGAGATGGAGGCTCTG 59.312 57.143 15.23 0.00 32.98 3.35
6690 7040 0.636101 AGAGGAGATGGAGGCTCTGT 59.364 55.000 15.23 3.00 32.98 3.41
6691 7041 0.752054 GAGGAGATGGAGGCTCTGTG 59.248 60.000 15.23 0.00 32.98 3.66
6692 7042 0.690411 AGGAGATGGAGGCTCTGTGG 60.690 60.000 15.23 0.00 32.98 4.17
6693 7043 1.694133 GGAGATGGAGGCTCTGTGGG 61.694 65.000 15.23 0.00 32.98 4.61
6694 7044 2.191641 GATGGAGGCTCTGTGGGC 59.808 66.667 15.23 0.00 0.00 5.36
6697 7047 1.792757 ATGGAGGCTCTGTGGGCAAA 61.793 55.000 15.23 0.00 0.00 3.68
6699 7049 1.676967 GAGGCTCTGTGGGCAAAGG 60.677 63.158 7.40 0.00 0.00 3.11
6700 7050 2.677875 GGCTCTGTGGGCAAAGGG 60.678 66.667 0.00 0.00 0.00 3.95
6701 7051 2.116125 GCTCTGTGGGCAAAGGGT 59.884 61.111 0.00 0.00 0.00 4.34
6702 7052 1.378762 GCTCTGTGGGCAAAGGGTA 59.621 57.895 0.00 0.00 0.00 3.69
6703 7053 0.034089 GCTCTGTGGGCAAAGGGTAT 60.034 55.000 0.00 0.00 0.00 2.73
6704 7054 1.755179 CTCTGTGGGCAAAGGGTATG 58.245 55.000 0.00 0.00 0.00 2.39
6705 7055 0.331278 TCTGTGGGCAAAGGGTATGG 59.669 55.000 0.00 0.00 0.00 2.74
6706 7056 0.684153 CTGTGGGCAAAGGGTATGGG 60.684 60.000 0.00 0.00 0.00 4.00
6707 7057 1.381191 GTGGGCAAAGGGTATGGGG 60.381 63.158 0.00 0.00 0.00 4.96
6708 7058 2.443952 GGGCAAAGGGTATGGGGC 60.444 66.667 0.00 0.00 0.00 5.80
6709 7059 2.362565 GGCAAAGGGTATGGGGCA 59.637 61.111 0.00 0.00 0.00 5.36
6710 7060 2.058001 GGCAAAGGGTATGGGGCAC 61.058 63.158 0.00 0.00 0.00 5.01
6711 7061 1.000359 GCAAAGGGTATGGGGCACT 60.000 57.895 0.00 0.00 0.00 4.40
6712 7062 1.037579 GCAAAGGGTATGGGGCACTC 61.038 60.000 0.00 0.00 0.00 3.51
6713 7063 0.625849 CAAAGGGTATGGGGCACTCT 59.374 55.000 0.00 0.00 0.00 3.24
6714 7064 1.005924 CAAAGGGTATGGGGCACTCTT 59.994 52.381 0.00 0.00 38.37 2.85
6715 7065 0.625849 AAGGGTATGGGGCACTCTTG 59.374 55.000 0.00 0.00 35.38 3.02
6716 7066 1.227383 GGGTATGGGGCACTCTTGG 59.773 63.158 0.00 0.00 0.00 3.61
6717 7067 1.571773 GGGTATGGGGCACTCTTGGT 61.572 60.000 0.00 0.00 0.00 3.67
6719 7069 0.394352 GTATGGGGCACTCTTGGTGG 60.394 60.000 0.00 0.00 45.44 4.61
6734 7084 3.627952 TGGCCGGCGAGGTGTTTA 61.628 61.111 22.54 0.00 43.70 2.01
6735 7085 2.358984 GGCCGGCGAGGTGTTTAA 60.359 61.111 22.54 0.00 43.70 1.52
6736 7086 1.747745 GGCCGGCGAGGTGTTTAAT 60.748 57.895 22.54 0.00 43.70 1.40
6737 7087 1.712018 GGCCGGCGAGGTGTTTAATC 61.712 60.000 22.54 0.00 43.70 1.75
6738 7088 2.003672 CCGGCGAGGTGTTTAATCG 58.996 57.895 9.30 0.00 39.40 3.34
6739 7089 0.458889 CCGGCGAGGTGTTTAATCGA 60.459 55.000 9.30 0.00 38.72 3.59
6740 7090 0.643820 CGGCGAGGTGTTTAATCGAC 59.356 55.000 0.00 0.00 41.08 4.20
6741 7091 1.004595 GGCGAGGTGTTTAATCGACC 58.995 55.000 0.00 0.00 38.55 4.79
6742 7092 1.405121 GGCGAGGTGTTTAATCGACCT 60.405 52.381 0.00 0.00 43.06 3.85
6755 7105 3.379445 GACCTCGAGGACGGGCAA 61.379 66.667 37.69 0.00 38.86 4.52
6756 7106 3.644399 GACCTCGAGGACGGGCAAC 62.644 68.421 37.69 13.21 38.86 4.17
6757 7107 3.691342 CCTCGAGGACGGGCAACA 61.691 66.667 28.21 0.00 38.86 3.33
6758 7108 2.342279 CTCGAGGACGGGCAACAA 59.658 61.111 3.91 0.00 40.21 2.83
6759 7109 2.027625 CTCGAGGACGGGCAACAAC 61.028 63.158 3.91 0.00 40.21 3.32
6760 7110 2.280524 CGAGGACGGGCAACAACA 60.281 61.111 0.00 0.00 39.74 3.33
6761 7111 2.317609 CGAGGACGGGCAACAACAG 61.318 63.158 0.00 0.00 39.74 3.16
6762 7112 1.966451 GAGGACGGGCAACAACAGG 60.966 63.158 0.00 0.00 39.74 4.00
6763 7113 2.983592 GGACGGGCAACAACAGGG 60.984 66.667 0.00 0.00 39.74 4.45
6764 7114 3.670377 GACGGGCAACAACAGGGC 61.670 66.667 0.00 0.00 39.74 5.19
6765 7115 4.514585 ACGGGCAACAACAGGGCA 62.515 61.111 0.00 0.00 39.74 5.36
6766 7116 2.990967 CGGGCAACAACAGGGCAT 60.991 61.111 0.00 0.00 39.74 4.40
6767 7117 2.973082 GGGCAACAACAGGGCATC 59.027 61.111 0.00 0.00 39.74 3.91
6768 7118 1.907807 GGGCAACAACAGGGCATCA 60.908 57.895 0.00 0.00 39.74 3.07
6769 7119 1.290009 GGCAACAACAGGGCATCAC 59.710 57.895 0.00 0.00 0.00 3.06
6770 7120 1.462731 GGCAACAACAGGGCATCACA 61.463 55.000 0.00 0.00 0.00 3.58
6771 7121 0.038892 GCAACAACAGGGCATCACAG 60.039 55.000 0.00 0.00 0.00 3.66
6772 7122 1.321474 CAACAACAGGGCATCACAGT 58.679 50.000 0.00 0.00 0.00 3.55
6773 7123 1.001048 CAACAACAGGGCATCACAGTG 60.001 52.381 0.00 0.00 0.00 3.66
6774 7124 0.473755 ACAACAGGGCATCACAGTGA 59.526 50.000 5.50 5.50 0.00 3.41
6775 7125 1.133823 ACAACAGGGCATCACAGTGAA 60.134 47.619 7.50 0.00 0.00 3.18
6776 7126 1.538512 CAACAGGGCATCACAGTGAAG 59.461 52.381 7.50 4.08 0.00 3.02
6777 7127 0.767375 ACAGGGCATCACAGTGAAGT 59.233 50.000 7.50 0.00 0.00 3.01
6778 7128 1.143684 ACAGGGCATCACAGTGAAGTT 59.856 47.619 7.50 0.00 0.00 2.66
6779 7129 2.371841 ACAGGGCATCACAGTGAAGTTA 59.628 45.455 7.50 0.00 0.00 2.24
6780 7130 3.005554 CAGGGCATCACAGTGAAGTTAG 58.994 50.000 7.50 0.00 0.00 2.34
6781 7131 1.740025 GGGCATCACAGTGAAGTTAGC 59.260 52.381 7.50 7.00 0.00 3.09
6782 7132 2.616510 GGGCATCACAGTGAAGTTAGCT 60.617 50.000 7.50 0.00 0.00 3.32
6783 7133 2.417933 GGCATCACAGTGAAGTTAGCTG 59.582 50.000 7.50 0.29 36.41 4.24
6784 7134 3.329386 GCATCACAGTGAAGTTAGCTGA 58.671 45.455 7.50 0.00 34.60 4.26
6785 7135 3.748048 GCATCACAGTGAAGTTAGCTGAA 59.252 43.478 7.50 2.42 34.60 3.02
6786 7136 4.214119 GCATCACAGTGAAGTTAGCTGAAA 59.786 41.667 7.50 0.00 34.60 2.69
6787 7137 5.616424 GCATCACAGTGAAGTTAGCTGAAAG 60.616 44.000 7.50 3.73 34.60 2.62
6788 7138 4.380531 TCACAGTGAAGTTAGCTGAAAGG 58.619 43.478 0.00 1.63 34.60 3.11
6789 7139 4.100963 TCACAGTGAAGTTAGCTGAAAGGA 59.899 41.667 0.00 3.37 34.60 3.36
6790 7140 4.999950 CACAGTGAAGTTAGCTGAAAGGAT 59.000 41.667 11.67 0.00 34.60 3.24
6791 7141 6.014584 TCACAGTGAAGTTAGCTGAAAGGATA 60.015 38.462 0.00 0.00 34.60 2.59
6792 7142 6.650807 CACAGTGAAGTTAGCTGAAAGGATAA 59.349 38.462 11.67 0.00 34.60 1.75
6793 7143 6.651225 ACAGTGAAGTTAGCTGAAAGGATAAC 59.349 38.462 11.67 0.00 38.06 1.89
6794 7144 6.650807 CAGTGAAGTTAGCTGAAAGGATAACA 59.349 38.462 0.00 0.00 39.59 2.41
6795 7145 7.173218 CAGTGAAGTTAGCTGAAAGGATAACAA 59.827 37.037 0.00 0.00 39.59 2.83
6796 7146 7.885399 AGTGAAGTTAGCTGAAAGGATAACAAT 59.115 33.333 0.00 0.00 39.59 2.71
6797 7147 7.965107 GTGAAGTTAGCTGAAAGGATAACAATG 59.035 37.037 0.00 0.00 39.59 2.82
6798 7148 7.882791 TGAAGTTAGCTGAAAGGATAACAATGA 59.117 33.333 0.00 0.00 39.59 2.57
6799 7149 8.814038 AAGTTAGCTGAAAGGATAACAATGAT 57.186 30.769 0.00 0.00 39.59 2.45
6800 7150 8.218338 AGTTAGCTGAAAGGATAACAATGATG 57.782 34.615 0.00 0.00 39.59 3.07
6801 7151 5.511234 AGCTGAAAGGATAACAATGATGC 57.489 39.130 0.00 0.00 0.00 3.91
6802 7152 4.036027 AGCTGAAAGGATAACAATGATGCG 59.964 41.667 0.00 0.00 0.00 4.73
6803 7153 4.201950 GCTGAAAGGATAACAATGATGCGT 60.202 41.667 0.00 0.00 0.00 5.24
6804 7154 5.677091 GCTGAAAGGATAACAATGATGCGTT 60.677 40.000 0.00 0.00 0.00 4.84
6805 7155 6.266168 TGAAAGGATAACAATGATGCGTTT 57.734 33.333 0.00 0.00 0.00 3.60
6806 7156 6.321717 TGAAAGGATAACAATGATGCGTTTC 58.678 36.000 0.00 0.00 0.00 2.78
6807 7157 6.150976 TGAAAGGATAACAATGATGCGTTTCT 59.849 34.615 0.00 0.00 0.00 2.52
6808 7158 6.515272 AAGGATAACAATGATGCGTTTCTT 57.485 33.333 0.00 0.00 0.00 2.52
6809 7159 6.124088 AGGATAACAATGATGCGTTTCTTC 57.876 37.500 0.00 0.00 0.00 2.87
6810 7160 5.882557 AGGATAACAATGATGCGTTTCTTCT 59.117 36.000 0.00 0.00 0.00 2.85
6811 7161 6.375455 AGGATAACAATGATGCGTTTCTTCTT 59.625 34.615 0.00 0.00 0.00 2.52
6812 7162 6.688813 GGATAACAATGATGCGTTTCTTCTTC 59.311 38.462 0.00 0.00 0.00 2.87
6813 7163 5.695851 AACAATGATGCGTTTCTTCTTCT 57.304 34.783 0.00 0.00 0.00 2.85
6814 7164 5.695851 ACAATGATGCGTTTCTTCTTCTT 57.304 34.783 0.00 0.00 0.00 2.52
6815 7165 5.693814 ACAATGATGCGTTTCTTCTTCTTC 58.306 37.500 0.00 0.00 0.00 2.87
6816 7166 5.471456 ACAATGATGCGTTTCTTCTTCTTCT 59.529 36.000 0.00 0.00 0.00 2.85
6817 7167 6.016777 ACAATGATGCGTTTCTTCTTCTTCTT 60.017 34.615 0.00 0.00 0.00 2.52
6818 7168 5.597813 TGATGCGTTTCTTCTTCTTCTTC 57.402 39.130 0.00 0.00 0.00 2.87
6819 7169 5.300752 TGATGCGTTTCTTCTTCTTCTTCT 58.699 37.500 0.00 0.00 0.00 2.85
6820 7170 5.760253 TGATGCGTTTCTTCTTCTTCTTCTT 59.240 36.000 0.00 0.00 0.00 2.52
6821 7171 5.659048 TGCGTTTCTTCTTCTTCTTCTTC 57.341 39.130 0.00 0.00 0.00 2.87
6822 7172 5.360591 TGCGTTTCTTCTTCTTCTTCTTCT 58.639 37.500 0.00 0.00 0.00 2.85
6823 7173 5.817816 TGCGTTTCTTCTTCTTCTTCTTCTT 59.182 36.000 0.00 0.00 0.00 2.52
6824 7174 6.018669 TGCGTTTCTTCTTCTTCTTCTTCTTC 60.019 38.462 0.00 0.00 0.00 2.87
6825 7175 6.201997 GCGTTTCTTCTTCTTCTTCTTCTTCT 59.798 38.462 0.00 0.00 0.00 2.85
6826 7176 7.254624 GCGTTTCTTCTTCTTCTTCTTCTTCTT 60.255 37.037 0.00 0.00 0.00 2.52
6827 7177 8.272866 CGTTTCTTCTTCTTCTTCTTCTTCTTC 58.727 37.037 0.00 0.00 0.00 2.87
6828 7178 7.938563 TTCTTCTTCTTCTTCTTCTTCTTCG 57.061 36.000 0.00 0.00 0.00 3.79
6829 7179 7.278461 TCTTCTTCTTCTTCTTCTTCTTCGA 57.722 36.000 0.00 0.00 0.00 3.71
6830 7180 7.367285 TCTTCTTCTTCTTCTTCTTCTTCGAG 58.633 38.462 0.00 0.00 0.00 4.04
6831 7181 6.019779 TCTTCTTCTTCTTCTTCTTCGAGG 57.980 41.667 0.00 0.00 0.00 4.63
6832 7182 5.770663 TCTTCTTCTTCTTCTTCTTCGAGGA 59.229 40.000 0.00 0.00 0.00 3.71
6833 7183 6.265649 TCTTCTTCTTCTTCTTCTTCGAGGAA 59.734 38.462 9.82 9.82 0.00 3.36
6834 7184 6.406692 TCTTCTTCTTCTTCTTCGAGGAAA 57.593 37.500 11.41 0.00 30.09 3.13
6835 7185 6.817184 TCTTCTTCTTCTTCTTCGAGGAAAA 58.183 36.000 11.41 7.78 30.09 2.29
6836 7186 7.272978 TCTTCTTCTTCTTCTTCGAGGAAAAA 58.727 34.615 11.41 3.63 30.09 1.94
6837 7187 7.439655 TCTTCTTCTTCTTCTTCGAGGAAAAAG 59.560 37.037 15.22 15.22 31.87 2.27
6838 7188 5.467063 TCTTCTTCTTCTTCGAGGAAAAAGC 59.533 40.000 16.26 0.00 29.63 3.51
6839 7189 4.065789 TCTTCTTCTTCGAGGAAAAAGCC 58.934 43.478 16.26 0.00 27.76 4.35
6840 7190 3.771577 TCTTCTTCGAGGAAAAAGCCT 57.228 42.857 11.41 0.00 42.17 4.58
6876 7226 5.309282 AGAATGAGAACAGAGGGAAAGAAGT 59.691 40.000 0.00 0.00 0.00 3.01
6910 7261 9.883293 TTATTCTTATAGGAGAATGAGGAGACA 57.117 33.333 9.14 0.00 44.05 3.41
6918 7269 0.246635 AATGAGGAGACACGAACCCG 59.753 55.000 0.00 0.00 42.50 5.28
6949 7300 0.249031 GCAACCTTTGTGCTGTCCAC 60.249 55.000 0.00 0.00 44.90 4.02
6961 7312 4.699522 GTCCACCGCTCCACCCAC 62.700 72.222 0.00 0.00 0.00 4.61
6985 7336 1.984424 AGCTCCTCTGAAAAGCCTCTT 59.016 47.619 7.18 0.00 36.69 2.85
6990 7341 3.006247 CCTCTGAAAAGCCTCTTAGCAC 58.994 50.000 0.00 0.00 34.23 4.40
7009 7360 1.134175 ACTTTGTTGCGAAACCCACAG 59.866 47.619 3.18 0.00 0.00 3.66
7023 7374 3.861840 ACCCACAGAGTTACATCATTCG 58.138 45.455 0.00 0.00 0.00 3.34
7026 7377 4.142026 CCCACAGAGTTACATCATTCGGTA 60.142 45.833 0.00 0.00 0.00 4.02
7037 7388 4.570772 ACATCATTCGGTACACATGTAAGC 59.429 41.667 0.00 0.00 31.52 3.09
7044 7395 4.575236 TCGGTACACATGTAAGCAAAAACA 59.425 37.500 0.00 0.00 31.52 2.83
7073 7424 4.473444 GATCACCATCCCACCAATACATT 58.527 43.478 0.00 0.00 0.00 2.71
7079 7430 4.339247 CCATCCCACCAATACATTGAAGAC 59.661 45.833 3.48 0.00 40.14 3.01
7080 7431 4.649267 TCCCACCAATACATTGAAGACA 57.351 40.909 3.48 0.00 40.14 3.41
7180 7531 3.999663 GCCTATGTCATGCCACTAAGATC 59.000 47.826 0.00 0.00 0.00 2.75
7181 7532 4.503817 GCCTATGTCATGCCACTAAGATCA 60.504 45.833 0.00 0.00 0.00 2.92
7183 7534 6.575056 GCCTATGTCATGCCACTAAGATCATA 60.575 42.308 0.00 0.00 0.00 2.15
7185 7536 4.620982 TGTCATGCCACTAAGATCATACG 58.379 43.478 0.00 0.00 0.00 3.06
7202 7594 9.019764 AGATCATACGTTTTGTTTTTGTTCTTG 57.980 29.630 0.00 0.00 0.00 3.02
7227 7619 9.941325 TGGTTTTGTTAATGAAATCAATATGCT 57.059 25.926 0.00 0.00 0.00 3.79
7238 7630 2.355197 TCAATATGCTCACACGTTGGG 58.645 47.619 0.00 0.00 0.00 4.12
7258 7652 3.443681 GGGTGTAACATCTGTTGGAATGG 59.556 47.826 5.84 0.00 39.98 3.16
7301 7892 5.952347 ATCCGATAGAGTAAAAACCCAGT 57.048 39.130 0.00 0.00 39.76 4.00
7303 7894 4.161001 TCCGATAGAGTAAAAACCCAGTCC 59.839 45.833 0.00 0.00 39.76 3.85
7305 7896 2.853235 AGAGTAAAAACCCAGTCCCG 57.147 50.000 0.00 0.00 0.00 5.14
7479 8070 9.797556 AAAGTAAACAACATGGTAAAAGAAGTC 57.202 29.630 0.00 0.00 0.00 3.01
7490 8081 9.892130 CATGGTAAAAGAAGTCTAGTTATCCTT 57.108 33.333 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.031537 TGGATAGTTCAGTCAAGTAATAACTCA 57.968 33.333 0.00 0.00 33.75 3.41
55 56 5.698741 ACTTCATGGACATGGATAGTTCA 57.301 39.130 11.98 0.00 39.24 3.18
56 57 8.506168 TTTAACTTCATGGACATGGATAGTTC 57.494 34.615 20.61 0.00 39.24 3.01
62 63 8.642935 TTTACATTTAACTTCATGGACATGGA 57.357 30.769 11.98 2.79 39.24 3.41
196 197 6.929049 AGCGAAACATGGAGAATATAATTCGA 59.071 34.615 8.10 0.00 39.39 3.71
350 388 7.894364 GGAGGGAGTACTATTACAATAGATCCA 59.106 40.741 20.92 5.11 40.63 3.41
351 389 7.067251 CGGAGGGAGTACTATTACAATAGATCC 59.933 44.444 14.43 15.44 40.63 3.36
353 391 7.468496 ACGGAGGGAGTACTATTACAATAGAT 58.532 38.462 14.43 3.60 40.63 1.98
354 392 6.845908 ACGGAGGGAGTACTATTACAATAGA 58.154 40.000 14.43 0.00 40.63 1.98
355 393 8.627208 TTACGGAGGGAGTACTATTACAATAG 57.373 38.462 0.00 7.32 43.15 1.73
356 394 8.995027 TTTACGGAGGGAGTACTATTACAATA 57.005 34.615 0.00 0.00 0.00 1.90
358 396 7.716799 TTTTACGGAGGGAGTACTATTACAA 57.283 36.000 0.00 0.00 0.00 2.41
359 397 7.716799 TTTTTACGGAGGGAGTACTATTACA 57.283 36.000 0.00 0.00 0.00 2.41
360 398 8.200120 ACATTTTTACGGAGGGAGTACTATTAC 58.800 37.037 0.00 0.00 0.00 1.89
376 429 9.093970 TGTATATGGTCTCTTCACATTTTTACG 57.906 33.333 0.00 0.00 0.00 3.18
475 533 6.366340 TCCCTGTACACAAATGTAGGAAAAA 58.634 36.000 0.00 0.00 42.06 1.94
477 535 5.308497 TCTCCCTGTACACAAATGTAGGAAA 59.692 40.000 0.00 0.00 42.06 3.13
478 536 4.841813 TCTCCCTGTACACAAATGTAGGAA 59.158 41.667 0.00 0.00 42.06 3.36
491 549 5.046520 ACCAAAAGATGTACTCTCCCTGTAC 60.047 44.000 0.00 0.00 40.27 2.90
522 581 4.876679 GCTCCAGTTGAAGGTTTAGATACC 59.123 45.833 0.00 0.00 38.53 2.73
546 605 4.511826 GGATGGAGTACATTTGTTCGATCC 59.488 45.833 9.33 9.33 40.72 3.36
584 643 3.243873 TGACTGAGACCTAGCAACACTTG 60.244 47.826 0.00 0.00 0.00 3.16
585 644 2.965831 TGACTGAGACCTAGCAACACTT 59.034 45.455 0.00 0.00 0.00 3.16
591 650 2.586648 TCAGTGACTGAGACCTAGCA 57.413 50.000 11.93 0.00 35.39 3.49
665 736 6.260050 TCCTACATTAAGATCCGTGCAAAATC 59.740 38.462 0.00 0.00 0.00 2.17
709 781 9.911788 ATCTCATCACTAAATTCCAATACAGTT 57.088 29.630 0.00 0.00 0.00 3.16
883 957 7.432869 TCAAATTAATTTCTGTCCAAGTGGTG 58.567 34.615 10.53 0.00 36.34 4.17
1329 1417 3.673338 TGCGAGATCGAACAGTGTAAAAG 59.327 43.478 6.39 0.00 43.02 2.27
1334 1422 3.108521 GTGCGAGATCGAACAGTGT 57.891 52.632 8.49 0.00 46.80 3.55
1472 1567 1.802365 CTTAACCGAAAGTCAACCCCG 59.198 52.381 0.00 0.00 0.00 5.73
1485 1580 1.131883 ACCGACATCGAGACTTAACCG 59.868 52.381 2.09 0.00 43.02 4.44
1652 1748 7.391148 TTTGAGATTCAATTAGTAACCCAGC 57.609 36.000 0.00 0.00 36.11 4.85
1663 1759 6.427853 TGACTGACACGATTTGAGATTCAATT 59.572 34.615 0.00 0.00 36.11 2.32
1700 1796 1.949257 CAAGGCAAGTTCCACGGAC 59.051 57.895 0.00 0.00 0.00 4.79
1710 1806 2.033049 GCACTCATGATAGCAAGGCAAG 59.967 50.000 12.99 0.00 0.00 4.01
1866 1991 9.322773 GACAGTTTAACCCAACTAGTATATTCC 57.677 37.037 0.00 0.00 35.10 3.01
1907 2039 2.417515 GCCGGTTCTCCTAAGAAGTCAG 60.418 54.545 1.90 0.00 42.14 3.51
2023 2155 4.454847 GGACTCAGGCTTTGTTTAGGTAAC 59.545 45.833 0.00 0.00 37.26 2.50
2059 2192 3.277142 AGTTTGGTTCTCTGGAAACGT 57.723 42.857 0.00 0.00 41.73 3.99
2109 2242 5.283717 CACAAAGTCAACAAAAGTCAAGACG 59.716 40.000 0.00 0.00 36.20 4.18
2111 2244 5.708948 CCACAAAGTCAACAAAAGTCAAGA 58.291 37.500 0.00 0.00 0.00 3.02
2143 2276 8.726870 AATTGTTTATATGCCTACGTAACAGT 57.273 30.769 0.00 0.00 0.00 3.55
2210 2374 7.651027 AAGGGATGTCTTCTTAATCAATTGG 57.349 36.000 5.42 0.00 0.00 3.16
2232 2396 5.840243 TTATGCCTGTCCATCAATCAAAG 57.160 39.130 0.00 0.00 0.00 2.77
2233 2397 6.380560 TCAATTATGCCTGTCCATCAATCAAA 59.619 34.615 0.00 0.00 0.00 2.69
2366 2539 4.136796 CAATAGAATCGCCAGGATCCAAA 58.863 43.478 15.82 0.00 33.02 3.28
2381 2554 3.609853 AGCTTTGGCGATCACAATAGAA 58.390 40.909 1.19 0.00 44.37 2.10
2393 2566 1.919918 TGTGTGAAAAAGCTTTGGCG 58.080 45.000 13.54 0.00 44.37 5.69
2429 2602 0.473755 TCTGCACTTCCTCAGCCAAA 59.526 50.000 0.00 0.00 0.00 3.28
2465 2638 1.625818 TCTCCCTTCTTGAGCTTGACC 59.374 52.381 0.00 0.00 0.00 4.02
2657 2830 4.537135 AACTAACCTCGAATGCTTCTGA 57.463 40.909 0.00 0.00 0.00 3.27
2684 2857 7.543947 TCATGACAACTATCATCACAATGTC 57.456 36.000 0.00 0.00 37.20 3.06
2784 2957 6.566079 TTGTCATCTGGAGTGATATCCTTT 57.434 37.500 0.00 0.00 40.29 3.11
2877 3050 3.488489 CACGTTAACAATGTGCCTTAGC 58.512 45.455 6.39 0.00 41.07 3.09
2896 3069 1.466167 CTACTGTGACTGCATTGCCAC 59.534 52.381 6.12 7.79 0.00 5.01
2930 3103 6.643770 GTGTAAGAAAGTGATCTCAACGGTAA 59.356 38.462 0.00 0.00 0.00 2.85
2931 3104 6.015688 AGTGTAAGAAAGTGATCTCAACGGTA 60.016 38.462 0.00 0.00 0.00 4.02
2932 3105 4.989168 GTGTAAGAAAGTGATCTCAACGGT 59.011 41.667 0.00 0.00 0.00 4.83
2933 3106 5.230942 AGTGTAAGAAAGTGATCTCAACGG 58.769 41.667 0.00 0.00 0.00 4.44
2934 3107 6.771188 AAGTGTAAGAAAGTGATCTCAACG 57.229 37.500 0.00 0.00 0.00 4.10
2935 3108 8.496751 GGTTAAGTGTAAGAAAGTGATCTCAAC 58.503 37.037 0.00 0.00 0.00 3.18
2937 3110 7.963532 AGGTTAAGTGTAAGAAAGTGATCTCA 58.036 34.615 0.00 0.00 0.00 3.27
2938 3111 9.924650 TTAGGTTAAGTGTAAGAAAGTGATCTC 57.075 33.333 0.00 0.00 0.00 2.75
3171 3344 2.305927 TCCACCCATCCAAGAAGAGAAC 59.694 50.000 0.00 0.00 0.00 3.01
3220 3393 0.108615 ACTGCACAGTATCACGAGGC 60.109 55.000 0.35 0.00 40.43 4.70
3252 3425 8.537016 TGTAGCACCTAACAGACTGTAAATATT 58.463 33.333 8.91 0.00 0.00 1.28
3288 3491 4.523173 ACGTAGTACCATGATATGACCAGG 59.477 45.833 0.00 0.00 41.94 4.45
3310 3513 9.726438 AAATAGTTGCCATATCCATAGTTCTAC 57.274 33.333 0.00 0.00 0.00 2.59
3338 3542 9.649167 GTAAAGGCACTAGAAGTTTAGATACAA 57.351 33.333 0.00 0.00 38.49 2.41
3357 3561 6.524101 TGGATTTCCTGTATTTGTAAAGGC 57.476 37.500 0.00 0.00 36.82 4.35
3395 3599 0.320697 AGCAGACGTCCCTTGTAACC 59.679 55.000 13.01 0.00 0.00 2.85
3549 3754 3.064207 TCGCCACATAGACAACTGAAAC 58.936 45.455 0.00 0.00 0.00 2.78
3668 3874 5.308759 GGGGTCTGGCCTACTATTTTACATA 59.691 44.000 3.32 0.00 37.43 2.29
3684 3890 1.573108 TAGCTCTTGAAGGGGTCTGG 58.427 55.000 0.00 0.00 0.00 3.86
3694 3900 7.165485 TGTTACTGCCTTTTTATAGCTCTTGA 58.835 34.615 0.00 0.00 0.00 3.02
3703 3909 7.094334 GCCTAGAAACTGTTACTGCCTTTTTAT 60.094 37.037 0.00 0.00 0.00 1.40
4017 4225 6.650120 ACGACCATTTCTCTACCAAACATAT 58.350 36.000 0.00 0.00 0.00 1.78
4040 4248 7.442364 TGCAAGAGAAGACTGGCATATATTAAC 59.558 37.037 0.00 0.00 41.23 2.01
4409 4617 4.771577 ACATATGCTCCAAAATTGTCACCA 59.228 37.500 1.58 0.00 0.00 4.17
4436 4644 3.952323 CTGAAGGAGATGTTGCCATTGAT 59.048 43.478 0.00 0.00 0.00 2.57
4541 4749 1.918467 CTGGGGCAGCCTCAAGATCA 61.918 60.000 17.06 0.00 31.34 2.92
5085 5293 0.741221 GTTTCCTAGCCTGCTGGTCG 60.741 60.000 11.69 0.21 35.27 4.79
5091 5299 5.278022 GCAGTTAATATGTTTCCTAGCCTGC 60.278 44.000 0.00 0.00 0.00 4.85
5122 5330 6.700960 CAGGTTTGCAACATATTGAAAAGTCA 59.299 34.615 0.00 0.00 42.89 3.41
5153 5361 3.054213 TGCATGAATTCCATCTCACTGGA 60.054 43.478 2.27 0.00 43.62 3.86
5245 5455 5.985530 AGAAATTACAGTTGCAAAAGAAGGC 59.014 36.000 0.00 0.00 0.00 4.35
5270 5480 1.145803 GCGAGGGTTTGTACTGTCAC 58.854 55.000 0.00 0.00 0.00 3.67
5337 5550 1.400142 GGCACCAAGGTTTGTTTTTGC 59.600 47.619 0.00 0.00 0.00 3.68
5444 5657 0.475475 TGGATGGCCTGCTTCCTATG 59.525 55.000 3.32 0.00 34.31 2.23
5706 5919 6.096987 TCTGAAACTAGGAGCCTGTTATACAG 59.903 42.308 0.00 11.00 45.53 2.74
5712 5925 2.569404 CCTCTGAAACTAGGAGCCTGTT 59.431 50.000 0.00 0.00 34.58 3.16
5738 5951 1.673665 CTTCTCACCCAGTGGCTGC 60.674 63.158 2.61 0.00 33.87 5.25
5819 6032 4.116961 TGTTGAACGAAGTACAGGAGTTG 58.883 43.478 0.00 0.00 45.00 3.16
5889 6108 6.865205 CCTGAAATCAAGAACATCCAGTTTTC 59.135 38.462 0.00 0.00 41.51 2.29
5900 6119 3.569701 TCCAGCAACCTGAAATCAAGAAC 59.430 43.478 0.00 0.00 41.77 3.01
5922 6141 4.103153 TCACCTTCAAGAAGATCCTTGTGT 59.897 41.667 11.25 5.55 42.95 3.72
6123 6342 3.807538 GCGTACTCACTCGCCGGA 61.808 66.667 5.05 0.00 45.54 5.14
6268 6488 2.423446 GCCCACAGCCCTCGATAG 59.577 66.667 0.00 0.00 34.35 2.08
6465 6780 2.177394 TATTCAGCGCACTGGAAACA 57.823 45.000 11.47 0.00 44.59 2.83
6466 6781 3.764885 AATATTCAGCGCACTGGAAAC 57.235 42.857 11.47 0.00 44.59 2.78
6467 6782 4.765273 TCTAATATTCAGCGCACTGGAAA 58.235 39.130 11.47 0.00 44.59 3.13
6468 6783 4.400529 TCTAATATTCAGCGCACTGGAA 57.599 40.909 11.47 8.27 44.59 3.53
6541 6856 1.418373 GGATTTCAACCGCAACAAGC 58.582 50.000 0.00 0.00 40.87 4.01
6543 6858 1.339610 CTGGGATTTCAACCGCAACAA 59.660 47.619 0.00 0.00 0.00 2.83
6628 6943 4.167554 TCAACAACCGATTAAATGCACC 57.832 40.909 0.00 0.00 0.00 5.01
6629 6944 5.861251 TCATTCAACAACCGATTAAATGCAC 59.139 36.000 0.00 0.00 0.00 4.57
6630 6945 6.018589 TCATTCAACAACCGATTAAATGCA 57.981 33.333 0.00 0.00 0.00 3.96
6631 6946 5.004726 GCTCATTCAACAACCGATTAAATGC 59.995 40.000 0.00 0.00 0.00 3.56
6632 6947 6.252015 CAGCTCATTCAACAACCGATTAAATG 59.748 38.462 0.00 0.00 0.00 2.32
6633 6948 6.324819 CAGCTCATTCAACAACCGATTAAAT 58.675 36.000 0.00 0.00 0.00 1.40
6637 6952 2.489329 CCAGCTCATTCAACAACCGATT 59.511 45.455 0.00 0.00 0.00 3.34
6638 6953 2.086869 CCAGCTCATTCAACAACCGAT 58.913 47.619 0.00 0.00 0.00 4.18
6639 6954 1.071542 TCCAGCTCATTCAACAACCGA 59.928 47.619 0.00 0.00 0.00 4.69
6640 6955 1.522668 TCCAGCTCATTCAACAACCG 58.477 50.000 0.00 0.00 0.00 4.44
6642 6957 3.248266 GCAATCCAGCTCATTCAACAAC 58.752 45.455 0.00 0.00 0.00 3.32
6643 6958 2.892215 TGCAATCCAGCTCATTCAACAA 59.108 40.909 0.00 0.00 34.99 2.83
6645 6960 2.751259 TCTGCAATCCAGCTCATTCAAC 59.249 45.455 0.00 0.00 41.50 3.18
6666 7016 0.399806 GCCTCCATCTCCTCTTCCCT 60.400 60.000 0.00 0.00 0.00 4.20
6684 7034 0.034089 ATACCCTTTGCCCACAGAGC 60.034 55.000 0.00 0.00 0.00 4.09
6685 7035 1.683011 CCATACCCTTTGCCCACAGAG 60.683 57.143 0.00 0.00 0.00 3.35
6686 7036 0.331278 CCATACCCTTTGCCCACAGA 59.669 55.000 0.00 0.00 0.00 3.41
6687 7037 0.684153 CCCATACCCTTTGCCCACAG 60.684 60.000 0.00 0.00 0.00 3.66
6688 7038 1.386155 CCCATACCCTTTGCCCACA 59.614 57.895 0.00 0.00 0.00 4.17
6689 7039 1.381191 CCCCATACCCTTTGCCCAC 60.381 63.158 0.00 0.00 0.00 4.61
6690 7040 3.104836 CCCCATACCCTTTGCCCA 58.895 61.111 0.00 0.00 0.00 5.36
6691 7041 2.443952 GCCCCATACCCTTTGCCC 60.444 66.667 0.00 0.00 0.00 5.36
6692 7042 2.058001 GTGCCCCATACCCTTTGCC 61.058 63.158 0.00 0.00 0.00 4.52
6693 7043 1.000359 AGTGCCCCATACCCTTTGC 60.000 57.895 0.00 0.00 0.00 3.68
6694 7044 0.625849 AGAGTGCCCCATACCCTTTG 59.374 55.000 0.00 0.00 0.00 2.77
6697 7047 1.281925 CCAAGAGTGCCCCATACCCT 61.282 60.000 0.00 0.00 0.00 4.34
6699 7049 0.394352 CACCAAGAGTGCCCCATACC 60.394 60.000 0.00 0.00 40.28 2.73
6700 7050 0.394352 CCACCAAGAGTGCCCCATAC 60.394 60.000 0.00 0.00 45.83 2.39
6701 7051 1.998530 CCACCAAGAGTGCCCCATA 59.001 57.895 0.00 0.00 45.83 2.74
6702 7052 2.765969 CCACCAAGAGTGCCCCAT 59.234 61.111 0.00 0.00 45.83 4.00
6703 7053 4.284550 GCCACCAAGAGTGCCCCA 62.285 66.667 0.00 0.00 45.83 4.96
6716 7066 3.887335 TAAACACCTCGCCGGCCAC 62.887 63.158 23.46 0.00 35.61 5.01
6717 7067 2.472414 ATTAAACACCTCGCCGGCCA 62.472 55.000 23.46 7.41 35.61 5.36
6718 7068 1.712018 GATTAAACACCTCGCCGGCC 61.712 60.000 23.46 2.84 35.61 6.13
6719 7069 1.719709 GATTAAACACCTCGCCGGC 59.280 57.895 19.07 19.07 35.61 6.13
6720 7070 0.458889 TCGATTAAACACCTCGCCGG 60.459 55.000 0.00 0.00 39.35 6.13
6721 7071 0.643820 GTCGATTAAACACCTCGCCG 59.356 55.000 0.00 0.00 32.62 6.46
6722 7072 1.004595 GGTCGATTAAACACCTCGCC 58.995 55.000 0.00 0.00 32.62 5.54
6723 7073 1.925185 GAGGTCGATTAAACACCTCGC 59.075 52.381 12.62 0.37 45.23 5.03
6738 7088 3.379445 TTGCCCGTCCTCGAGGTC 61.379 66.667 30.17 23.75 39.71 3.85
6739 7089 3.692406 GTTGCCCGTCCTCGAGGT 61.692 66.667 30.17 0.00 39.71 3.85
6740 7090 3.234630 TTGTTGCCCGTCCTCGAGG 62.235 63.158 26.32 26.32 39.71 4.63
6741 7091 2.027625 GTTGTTGCCCGTCCTCGAG 61.028 63.158 5.13 5.13 39.71 4.04
6742 7092 2.029964 GTTGTTGCCCGTCCTCGA 59.970 61.111 0.00 0.00 39.71 4.04
6743 7093 2.280524 TGTTGTTGCCCGTCCTCG 60.281 61.111 0.00 0.00 0.00 4.63
6744 7094 1.966451 CCTGTTGTTGCCCGTCCTC 60.966 63.158 0.00 0.00 0.00 3.71
6745 7095 2.113139 CCTGTTGTTGCCCGTCCT 59.887 61.111 0.00 0.00 0.00 3.85
6746 7096 2.983592 CCCTGTTGTTGCCCGTCC 60.984 66.667 0.00 0.00 0.00 4.79
6747 7097 3.670377 GCCCTGTTGTTGCCCGTC 61.670 66.667 0.00 0.00 0.00 4.79
6748 7098 3.808218 ATGCCCTGTTGTTGCCCGT 62.808 57.895 0.00 0.00 0.00 5.28
6749 7099 2.990967 ATGCCCTGTTGTTGCCCG 60.991 61.111 0.00 0.00 0.00 6.13
6750 7100 1.907807 TGATGCCCTGTTGTTGCCC 60.908 57.895 0.00 0.00 0.00 5.36
6751 7101 1.290009 GTGATGCCCTGTTGTTGCC 59.710 57.895 0.00 0.00 0.00 4.52
6752 7102 0.038892 CTGTGATGCCCTGTTGTTGC 60.039 55.000 0.00 0.00 0.00 4.17
6753 7103 1.001048 CACTGTGATGCCCTGTTGTTG 60.001 52.381 0.32 0.00 0.00 3.33
6754 7104 1.133823 TCACTGTGATGCCCTGTTGTT 60.134 47.619 6.36 0.00 0.00 2.83
6755 7105 0.473755 TCACTGTGATGCCCTGTTGT 59.526 50.000 6.36 0.00 0.00 3.32
6756 7106 1.538512 CTTCACTGTGATGCCCTGTTG 59.461 52.381 11.86 0.00 0.00 3.33
6757 7107 1.143684 ACTTCACTGTGATGCCCTGTT 59.856 47.619 19.90 1.09 0.00 3.16
6758 7108 0.767375 ACTTCACTGTGATGCCCTGT 59.233 50.000 19.90 7.22 0.00 4.00
6759 7109 1.901591 AACTTCACTGTGATGCCCTG 58.098 50.000 19.90 6.71 0.00 4.45
6760 7110 2.616510 GCTAACTTCACTGTGATGCCCT 60.617 50.000 19.90 9.95 0.00 5.19
6761 7111 1.740025 GCTAACTTCACTGTGATGCCC 59.260 52.381 19.90 5.91 0.00 5.36
6762 7112 2.417933 CAGCTAACTTCACTGTGATGCC 59.582 50.000 19.90 8.95 0.00 4.40
6763 7113 3.329386 TCAGCTAACTTCACTGTGATGC 58.671 45.455 19.90 14.56 33.12 3.91
6764 7114 5.106791 CCTTTCAGCTAACTTCACTGTGATG 60.107 44.000 18.77 18.77 33.12 3.07
6765 7115 4.999950 CCTTTCAGCTAACTTCACTGTGAT 59.000 41.667 11.86 0.00 33.12 3.06
6766 7116 4.100963 TCCTTTCAGCTAACTTCACTGTGA 59.899 41.667 6.36 6.36 33.12 3.58
6767 7117 4.380531 TCCTTTCAGCTAACTTCACTGTG 58.619 43.478 0.17 0.17 33.12 3.66
6768 7118 4.689612 TCCTTTCAGCTAACTTCACTGT 57.310 40.909 0.00 0.00 33.12 3.55
6769 7119 6.650807 TGTTATCCTTTCAGCTAACTTCACTG 59.349 38.462 0.00 0.00 0.00 3.66
6770 7120 6.769512 TGTTATCCTTTCAGCTAACTTCACT 58.230 36.000 0.00 0.00 0.00 3.41
6771 7121 7.435068 TTGTTATCCTTTCAGCTAACTTCAC 57.565 36.000 0.00 0.00 0.00 3.18
6772 7122 7.882791 TCATTGTTATCCTTTCAGCTAACTTCA 59.117 33.333 0.00 0.00 0.00 3.02
6773 7123 8.268850 TCATTGTTATCCTTTCAGCTAACTTC 57.731 34.615 0.00 0.00 0.00 3.01
6774 7124 8.680903 CATCATTGTTATCCTTTCAGCTAACTT 58.319 33.333 0.00 0.00 0.00 2.66
6775 7125 7.201767 GCATCATTGTTATCCTTTCAGCTAACT 60.202 37.037 0.00 0.00 0.00 2.24
6776 7126 6.914757 GCATCATTGTTATCCTTTCAGCTAAC 59.085 38.462 0.00 0.00 0.00 2.34
6777 7127 6.238456 CGCATCATTGTTATCCTTTCAGCTAA 60.238 38.462 0.00 0.00 0.00 3.09
6778 7128 5.237127 CGCATCATTGTTATCCTTTCAGCTA 59.763 40.000 0.00 0.00 0.00 3.32
6779 7129 4.036027 CGCATCATTGTTATCCTTTCAGCT 59.964 41.667 0.00 0.00 0.00 4.24
6780 7130 4.201950 ACGCATCATTGTTATCCTTTCAGC 60.202 41.667 0.00 0.00 0.00 4.26
6781 7131 5.490139 ACGCATCATTGTTATCCTTTCAG 57.510 39.130 0.00 0.00 0.00 3.02
6782 7132 5.895636 AACGCATCATTGTTATCCTTTCA 57.104 34.783 0.00 0.00 0.00 2.69
6783 7133 6.555315 AGAAACGCATCATTGTTATCCTTTC 58.445 36.000 0.00 0.00 0.00 2.62
6784 7134 6.515272 AGAAACGCATCATTGTTATCCTTT 57.485 33.333 0.00 0.00 0.00 3.11
6785 7135 6.375455 AGAAGAAACGCATCATTGTTATCCTT 59.625 34.615 0.00 0.00 0.00 3.36
6786 7136 5.882557 AGAAGAAACGCATCATTGTTATCCT 59.117 36.000 0.00 0.00 0.00 3.24
6787 7137 6.124088 AGAAGAAACGCATCATTGTTATCC 57.876 37.500 0.00 0.00 0.00 2.59
6788 7138 7.467623 AGAAGAAGAAACGCATCATTGTTATC 58.532 34.615 0.00 0.00 0.00 1.75
6789 7139 7.383102 AGAAGAAGAAACGCATCATTGTTAT 57.617 32.000 0.00 0.00 0.00 1.89
6790 7140 6.801539 AGAAGAAGAAACGCATCATTGTTA 57.198 33.333 0.00 0.00 0.00 2.41
6791 7141 5.695851 AGAAGAAGAAACGCATCATTGTT 57.304 34.783 0.00 0.00 0.00 2.83
6792 7142 5.471456 AGAAGAAGAAGAAACGCATCATTGT 59.529 36.000 0.00 0.00 0.00 2.71
6793 7143 5.936054 AGAAGAAGAAGAAACGCATCATTG 58.064 37.500 0.00 0.00 0.00 2.82
6794 7144 6.429385 AGAAGAAGAAGAAGAAACGCATCATT 59.571 34.615 0.00 0.00 0.00 2.57
6795 7145 5.936956 AGAAGAAGAAGAAGAAACGCATCAT 59.063 36.000 0.00 0.00 0.00 2.45
6796 7146 5.300752 AGAAGAAGAAGAAGAAACGCATCA 58.699 37.500 0.00 0.00 0.00 3.07
6797 7147 5.854431 AGAAGAAGAAGAAGAAACGCATC 57.146 39.130 0.00 0.00 0.00 3.91
6798 7148 5.994668 AGAAGAAGAAGAAGAAGAAACGCAT 59.005 36.000 0.00 0.00 0.00 4.73
6799 7149 5.360591 AGAAGAAGAAGAAGAAGAAACGCA 58.639 37.500 0.00 0.00 0.00 5.24
6800 7150 5.915812 AGAAGAAGAAGAAGAAGAAACGC 57.084 39.130 0.00 0.00 0.00 4.84
6801 7151 7.707774 AGAAGAAGAAGAAGAAGAAGAAACG 57.292 36.000 0.00 0.00 0.00 3.60
6802 7152 8.272866 CGAAGAAGAAGAAGAAGAAGAAGAAAC 58.727 37.037 0.00 0.00 0.00 2.78
6803 7153 8.198109 TCGAAGAAGAAGAAGAAGAAGAAGAAA 58.802 33.333 0.00 0.00 0.00 2.52
6804 7154 7.717568 TCGAAGAAGAAGAAGAAGAAGAAGAA 58.282 34.615 0.00 0.00 0.00 2.52
6805 7155 7.278461 TCGAAGAAGAAGAAGAAGAAGAAGA 57.722 36.000 0.00 0.00 0.00 2.87
6806 7156 6.586082 CCTCGAAGAAGAAGAAGAAGAAGAAG 59.414 42.308 0.00 0.00 34.09 2.85
6807 7157 6.265649 TCCTCGAAGAAGAAGAAGAAGAAGAA 59.734 38.462 0.00 0.00 34.09 2.52
6808 7158 5.770663 TCCTCGAAGAAGAAGAAGAAGAAGA 59.229 40.000 0.00 0.00 34.09 2.87
6809 7159 6.019779 TCCTCGAAGAAGAAGAAGAAGAAG 57.980 41.667 0.00 0.00 34.09 2.85
6810 7160 6.406692 TTCCTCGAAGAAGAAGAAGAAGAA 57.593 37.500 0.00 0.00 31.26 2.52
6811 7161 6.406692 TTTCCTCGAAGAAGAAGAAGAAGA 57.593 37.500 0.00 0.00 38.30 2.87
6812 7162 7.484035 TTTTTCCTCGAAGAAGAAGAAGAAG 57.516 36.000 0.00 0.00 38.30 2.85
6813 7163 6.017852 GCTTTTTCCTCGAAGAAGAAGAAGAA 60.018 38.462 23.94 1.89 45.98 2.52
6814 7164 5.467063 GCTTTTTCCTCGAAGAAGAAGAAGA 59.533 40.000 23.94 0.00 45.98 2.87
6815 7165 5.334491 GGCTTTTTCCTCGAAGAAGAAGAAG 60.334 44.000 23.94 16.77 45.91 2.85
6816 7166 4.515567 GGCTTTTTCCTCGAAGAAGAAGAA 59.484 41.667 23.94 9.44 38.30 2.52
6817 7167 4.065789 GGCTTTTTCCTCGAAGAAGAAGA 58.934 43.478 23.94 3.14 38.30 2.87
6818 7168 4.068599 AGGCTTTTTCCTCGAAGAAGAAG 58.931 43.478 18.19 18.19 38.30 2.85
6819 7169 4.065789 GAGGCTTTTTCCTCGAAGAAGAA 58.934 43.478 8.41 0.00 42.74 2.52
6820 7170 3.665190 GAGGCTTTTTCCTCGAAGAAGA 58.335 45.455 8.41 0.00 42.74 2.87
6876 7226 6.210172 TCTCCTATAAGAATAAGACGGGGA 57.790 41.667 0.00 0.00 0.00 4.81
6930 7281 0.249031 GTGGACAGCACAAAGGTTGC 60.249 55.000 0.00 0.00 0.00 4.17
6949 7300 2.046892 CTCTTGTGGGTGGAGCGG 60.047 66.667 0.00 0.00 0.00 5.52
6961 7312 2.083002 GGCTTTTCAGAGGAGCTCTTG 58.917 52.381 14.64 10.06 38.99 3.02
6985 7336 1.335496 GGGTTTCGCAACAAAGTGCTA 59.665 47.619 0.00 0.00 42.62 3.49
6990 7341 1.403679 TCTGTGGGTTTCGCAACAAAG 59.596 47.619 0.00 0.00 35.20 2.77
7009 7360 5.810587 ACATGTGTACCGAATGATGTAACTC 59.189 40.000 0.00 0.00 0.00 3.01
7023 7374 7.027161 CCTATGTTTTTGCTTACATGTGTACC 58.973 38.462 9.11 0.00 36.46 3.34
7026 7377 6.446318 CACCTATGTTTTTGCTTACATGTGT 58.554 36.000 9.11 0.00 36.46 3.72
7180 7531 7.284518 ACCAAGAACAAAAACAAAACGTATG 57.715 32.000 0.00 0.00 0.00 2.39
7181 7532 7.892778 AACCAAGAACAAAAACAAAACGTAT 57.107 28.000 0.00 0.00 0.00 3.06
7183 7534 6.606234 AAACCAAGAACAAAAACAAAACGT 57.394 29.167 0.00 0.00 0.00 3.99
7185 7536 8.621921 AACAAAACCAAGAACAAAAACAAAAC 57.378 26.923 0.00 0.00 0.00 2.43
7238 7630 3.505680 TGCCATTCCAACAGATGTTACAC 59.494 43.478 0.00 0.00 36.32 2.90
7247 7641 4.730949 AGATTCATTGCCATTCCAACAG 57.269 40.909 0.00 0.00 0.00 3.16
7283 7677 4.161001 TCGGGACTGGGTTTTTACTCTATC 59.839 45.833 0.00 0.00 0.00 2.08
7284 7678 4.098894 TCGGGACTGGGTTTTTACTCTAT 58.901 43.478 0.00 0.00 0.00 1.98
7301 7892 2.115427 TCATGTAGAGCCAATTCGGGA 58.885 47.619 0.00 0.00 34.06 5.14
7303 7894 5.505173 AAAATCATGTAGAGCCAATTCGG 57.495 39.130 0.00 0.00 38.11 4.30
7305 7896 6.976925 CCTGAAAAATCATGTAGAGCCAATTC 59.023 38.462 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.