Multiple sequence alignment - TraesCS5D01G184300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G184300 chr5D 100.000 4518 0 0 1 4518 285676964 285681481 0.000000e+00 8344.0
1 TraesCS5D01G184300 chr5B 89.149 1539 61 34 73 1569 323880614 323882088 0.000000e+00 1820.0
2 TraesCS5D01G184300 chr5B 93.161 892 31 11 3329 4217 323883936 323884800 0.000000e+00 1282.0
3 TraesCS5D01G184300 chr5B 93.059 778 37 8 1736 2505 323882615 323883383 0.000000e+00 1122.0
4 TraesCS5D01G184300 chr5B 88.845 502 21 11 2590 3060 323883441 323883938 6.510000e-163 584.0
5 TraesCS5D01G184300 chr5B 92.308 299 7 9 4219 4516 323885066 323885349 1.170000e-110 411.0
6 TraesCS5D01G184300 chr5B 93.258 178 11 1 1562 1739 323882166 323882342 1.250000e-65 261.0
7 TraesCS5D01G184300 chr5B 92.308 52 4 0 2545 2596 323883369 323883420 1.740000e-09 75.0
8 TraesCS5D01G184300 chr5A 93.621 1207 38 12 3327 4516 377940648 377941832 0.000000e+00 1766.0
9 TraesCS5D01G184300 chr5A 88.965 1314 65 32 1195 2505 377938981 377940217 0.000000e+00 1550.0
10 TraesCS5D01G184300 chr5A 93.233 1064 27 19 147 1173 377937942 377938997 0.000000e+00 1524.0
11 TraesCS5D01G184300 chr5A 96.512 344 12 0 2545 2888 377940203 377940546 1.820000e-158 569.0
12 TraesCS5D01G184300 chr5A 91.743 109 1 3 2957 3061 377940545 377940649 1.310000e-30 145.0
13 TraesCS5D01G184300 chr1D 93.870 261 14 1 3073 3331 178459024 178458764 4.240000e-105 392.0
14 TraesCS5D01G184300 chr1D 92.278 259 18 2 3073 3330 233795757 233796014 2.570000e-97 366.0
15 TraesCS5D01G184300 chr2D 93.023 258 16 1 3073 3328 491380013 491379756 4.270000e-100 375.0
16 TraesCS5D01G184300 chr4D 92.395 263 16 4 3073 3332 4098896 4098635 5.520000e-99 372.0
17 TraesCS5D01G184300 chr4B 92.664 259 17 1 3073 3329 59051857 59051599 5.520000e-99 372.0
18 TraesCS5D01G184300 chr3B 92.664 259 17 1 3073 3329 26936075 26935817 5.520000e-99 372.0
19 TraesCS5D01G184300 chr3B 92.593 54 3 1 2491 2544 21150448 21150396 4.850000e-10 76.8
20 TraesCS5D01G184300 chr1B 92.664 259 17 1 3073 3329 640820268 640820010 5.520000e-99 372.0
21 TraesCS5D01G184300 chr1B 92.278 259 18 1 3073 3329 496360062 496360320 2.570000e-97 366.0
22 TraesCS5D01G184300 chr2A 90.775 271 22 2 3073 3340 45076132 45075862 4.300000e-95 359.0
23 TraesCS5D01G184300 chr2A 93.413 167 7 1 4233 4399 417102883 417102721 1.260000e-60 244.0
24 TraesCS5D01G184300 chr2B 98.000 50 1 0 2495 2544 606488995 606489044 2.240000e-13 87.9
25 TraesCS5D01G184300 chr7B 97.959 49 0 1 2497 2544 27489653 27489605 2.900000e-12 84.2
26 TraesCS5D01G184300 chr6D 97.872 47 1 0 2498 2544 181694816 181694862 1.040000e-11 82.4
27 TraesCS5D01G184300 chr6D 85.135 74 4 5 2477 2544 62205098 62205026 8.110000e-08 69.4
28 TraesCS5D01G184300 chr4A 94.340 53 1 2 2494 2544 29451886 29451938 3.750000e-11 80.5
29 TraesCS5D01G184300 chr4A 92.593 54 2 2 2492 2544 729050661 729050713 4.850000e-10 76.8
30 TraesCS5D01G184300 chrUn 100.000 42 0 0 2503 2544 425667734 425667775 1.350000e-10 78.7
31 TraesCS5D01G184300 chr3A 92.727 55 2 2 2492 2544 946926 946980 1.350000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G184300 chr5D 285676964 285681481 4517 False 8344.000000 8344 100.000000 1 4518 1 chr5D.!!$F1 4517
1 TraesCS5D01G184300 chr5B 323880614 323885349 4735 False 793.571429 1820 91.726857 73 4516 7 chr5B.!!$F1 4443
2 TraesCS5D01G184300 chr5A 377937942 377941832 3890 False 1110.800000 1766 92.814800 147 4516 5 chr5A.!!$F1 4369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.179000 ACCAGCTAGCATGTGTAGGC 59.821 55.000 18.83 0.00 0.00 3.93 F
956 1005 0.247262 CATTCGGCACATCGTGTTCG 60.247 55.000 0.00 1.58 35.75 3.95 F
2250 2686 1.082756 GACAAAACACGAGCAGCCG 60.083 57.895 0.00 2.15 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1069 1130 1.078759 CTAGAACCGCAGAGGCAACG 61.079 60.0 0.00 0.0 46.52 4.10 R
2532 2970 0.388907 CAAAACATTGCAGAGGCCGG 60.389 55.0 0.00 0.0 40.13 6.13 R
3540 4047 0.108945 CTTCCCTTCACGTACGGTCC 60.109 60.0 21.06 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.698309 ATGTGCGGAATATGAAGCTATATATAC 57.302 33.333 0.00 0.00 0.00 1.47
27 28 8.914011 TGTGCGGAATATGAAGCTATATATACT 58.086 33.333 0.00 0.00 0.00 2.12
28 29 9.186323 GTGCGGAATATGAAGCTATATATACTG 57.814 37.037 0.00 0.00 0.00 2.74
29 30 8.914011 TGCGGAATATGAAGCTATATATACTGT 58.086 33.333 0.00 0.00 0.00 3.55
30 31 9.400638 GCGGAATATGAAGCTATATATACTGTC 57.599 37.037 0.00 0.00 0.00 3.51
45 46 7.997773 ATATACTGTCTAAGCTATGTCCGAA 57.002 36.000 0.00 0.00 0.00 4.30
46 47 4.640789 ACTGTCTAAGCTATGTCCGAAG 57.359 45.455 0.00 0.00 0.00 3.79
47 48 3.181485 ACTGTCTAAGCTATGTCCGAAGC 60.181 47.826 0.00 0.00 39.08 3.86
48 49 2.758423 TGTCTAAGCTATGTCCGAAGCA 59.242 45.455 0.00 0.00 41.32 3.91
49 50 3.117046 GTCTAAGCTATGTCCGAAGCAC 58.883 50.000 0.00 0.00 41.32 4.40
50 51 2.100916 TCTAAGCTATGTCCGAAGCACC 59.899 50.000 0.00 0.00 41.32 5.01
51 52 0.613260 AAGCTATGTCCGAAGCACCA 59.387 50.000 0.00 0.00 41.32 4.17
52 53 0.613260 AGCTATGTCCGAAGCACCAA 59.387 50.000 0.00 0.00 41.32 3.67
53 54 1.003118 AGCTATGTCCGAAGCACCAAA 59.997 47.619 0.00 0.00 41.32 3.28
54 55 2.017049 GCTATGTCCGAAGCACCAAAT 58.983 47.619 0.00 0.00 38.63 2.32
55 56 2.423538 GCTATGTCCGAAGCACCAAATT 59.576 45.455 0.00 0.00 38.63 1.82
56 57 3.625764 GCTATGTCCGAAGCACCAAATTA 59.374 43.478 0.00 0.00 38.63 1.40
57 58 4.260784 GCTATGTCCGAAGCACCAAATTAG 60.261 45.833 0.00 0.00 38.63 1.73
58 59 3.410631 TGTCCGAAGCACCAAATTAGA 57.589 42.857 0.00 0.00 0.00 2.10
59 60 3.745799 TGTCCGAAGCACCAAATTAGAA 58.254 40.909 0.00 0.00 0.00 2.10
60 61 3.500680 TGTCCGAAGCACCAAATTAGAAC 59.499 43.478 0.00 0.00 0.00 3.01
61 62 3.078837 TCCGAAGCACCAAATTAGAACC 58.921 45.455 0.00 0.00 0.00 3.62
62 63 2.817258 CCGAAGCACCAAATTAGAACCA 59.183 45.455 0.00 0.00 0.00 3.67
63 64 3.119849 CCGAAGCACCAAATTAGAACCAG 60.120 47.826 0.00 0.00 0.00 4.00
64 65 3.670627 CGAAGCACCAAATTAGAACCAGC 60.671 47.826 0.00 0.00 0.00 4.85
65 66 3.160679 AGCACCAAATTAGAACCAGCT 57.839 42.857 0.00 0.00 0.00 4.24
66 67 4.301072 AGCACCAAATTAGAACCAGCTA 57.699 40.909 0.00 0.00 0.00 3.32
67 68 4.265073 AGCACCAAATTAGAACCAGCTAG 58.735 43.478 0.00 0.00 0.00 3.42
68 69 3.181496 GCACCAAATTAGAACCAGCTAGC 60.181 47.826 6.62 6.62 0.00 3.42
69 70 4.009675 CACCAAATTAGAACCAGCTAGCA 58.990 43.478 18.83 0.00 0.00 3.49
70 71 4.641989 CACCAAATTAGAACCAGCTAGCAT 59.358 41.667 18.83 0.00 0.00 3.79
71 72 4.641989 ACCAAATTAGAACCAGCTAGCATG 59.358 41.667 18.83 11.93 0.00 4.06
72 73 4.641989 CCAAATTAGAACCAGCTAGCATGT 59.358 41.667 18.83 10.50 0.00 3.21
73 74 5.449588 CCAAATTAGAACCAGCTAGCATGTG 60.450 44.000 18.83 6.48 0.00 3.21
74 75 3.981071 TTAGAACCAGCTAGCATGTGT 57.019 42.857 18.83 5.06 0.00 3.72
75 76 5.614324 ATTAGAACCAGCTAGCATGTGTA 57.386 39.130 18.83 6.25 0.00 2.90
76 77 3.533606 AGAACCAGCTAGCATGTGTAG 57.466 47.619 18.83 2.62 0.00 2.74
77 78 2.169352 AGAACCAGCTAGCATGTGTAGG 59.831 50.000 18.83 8.95 0.00 3.18
78 79 0.179000 ACCAGCTAGCATGTGTAGGC 59.821 55.000 18.83 0.00 0.00 3.93
84 85 2.029828 GCTAGCATGTGTAGGCGACTAT 60.030 50.000 10.63 0.00 46.56 2.12
91 92 2.621998 TGTGTAGGCGACTATCTAAGCC 59.378 50.000 0.00 0.00 46.56 4.35
132 133 5.235850 ACCACACACACATGGAACTAATA 57.764 39.130 0.00 0.00 39.46 0.98
144 145 8.116753 CACATGGAACTAATAAAACGATCACTC 58.883 37.037 0.00 0.00 0.00 3.51
145 146 7.822334 ACATGGAACTAATAAAACGATCACTCA 59.178 33.333 0.00 0.00 0.00 3.41
156 163 4.128925 ACGATCACTCATAATGCTGTGT 57.871 40.909 0.00 0.00 0.00 3.72
158 165 4.142071 ACGATCACTCATAATGCTGTGTCT 60.142 41.667 0.00 0.00 0.00 3.41
267 281 1.511318 ATGGCTACGCGTGCAAACAA 61.511 50.000 24.59 0.00 0.00 2.83
361 383 2.344950 CAAGCTAGCAACCTCACAGAG 58.655 52.381 18.83 0.00 0.00 3.35
428 450 1.502163 CCCCGAAGAATCTGCGATGC 61.502 60.000 13.05 0.00 33.75 3.91
429 451 1.561730 CCGAAGAATCTGCGATGCG 59.438 57.895 13.05 0.00 33.75 4.73
430 452 0.871592 CCGAAGAATCTGCGATGCGA 60.872 55.000 13.05 0.00 33.75 5.10
431 453 1.135046 CGAAGAATCTGCGATGCGAT 58.865 50.000 4.24 0.00 33.75 4.58
432 454 1.123936 CGAAGAATCTGCGATGCGATC 59.876 52.381 4.24 0.00 33.75 3.69
628 655 3.067320 TGACAAGACACTCTCTCACACAG 59.933 47.826 0.00 0.00 0.00 3.66
660 687 2.940410 TCATACATGCACACTGCTGATG 59.060 45.455 0.00 0.00 45.31 3.07
661 688 2.766345 TACATGCACACTGCTGATGA 57.234 45.000 0.00 0.00 45.31 2.92
662 689 2.124277 ACATGCACACTGCTGATGAT 57.876 45.000 0.00 0.00 45.31 2.45
663 690 3.271055 ACATGCACACTGCTGATGATA 57.729 42.857 0.00 0.00 45.31 2.15
664 691 3.816994 ACATGCACACTGCTGATGATAT 58.183 40.909 0.00 0.00 45.31 1.63
667 694 5.411669 ACATGCACACTGCTGATGATATATG 59.588 40.000 0.00 0.00 45.31 1.78
668 695 5.217978 TGCACACTGCTGATGATATATGA 57.782 39.130 0.00 0.00 45.31 2.15
669 696 5.801380 TGCACACTGCTGATGATATATGAT 58.199 37.500 0.00 0.00 45.31 2.45
953 1002 3.177600 GCATTCGGCACATCGTGT 58.822 55.556 0.00 0.00 43.97 4.49
955 1004 0.521242 GCATTCGGCACATCGTGTTC 60.521 55.000 0.00 0.00 43.97 3.18
956 1005 0.247262 CATTCGGCACATCGTGTTCG 60.247 55.000 0.00 1.58 35.75 3.95
958 1007 1.553195 TTCGGCACATCGTGTTCGTG 61.553 55.000 10.15 0.00 35.75 4.35
959 1008 2.307309 CGGCACATCGTGTTCGTGT 61.307 57.895 0.00 0.00 35.75 4.49
971 1029 3.425094 CGTGTTCGTGTTAGAGAGAGAGG 60.425 52.174 0.00 0.00 0.00 3.69
980 1038 4.975147 TGTTAGAGAGAGAGGGAGAGAGAT 59.025 45.833 0.00 0.00 0.00 2.75
1081 1142 3.197790 CATCCCGTTGCCTCTGCG 61.198 66.667 0.00 0.00 41.78 5.18
1239 1304 4.422073 TGGTTCTAGCATATGGGTGAAG 57.578 45.455 4.56 0.00 0.00 3.02
1289 1354 7.230510 ACATGCAAATTCTTCCACTAGTTGTAA 59.769 33.333 0.00 0.00 0.00 2.41
1290 1355 7.759489 TGCAAATTCTTCCACTAGTTGTAAT 57.241 32.000 0.00 0.00 0.00 1.89
1291 1356 7.592938 TGCAAATTCTTCCACTAGTTGTAATG 58.407 34.615 0.00 0.00 0.00 1.90
1292 1357 6.528072 GCAAATTCTTCCACTAGTTGTAATGC 59.472 38.462 0.00 0.00 0.00 3.56
1293 1358 7.592938 CAAATTCTTCCACTAGTTGTAATGCA 58.407 34.615 0.00 0.00 0.00 3.96
1294 1359 7.759489 AATTCTTCCACTAGTTGTAATGCAA 57.241 32.000 0.00 0.00 34.16 4.08
1295 1360 7.759489 ATTCTTCCACTAGTTGTAATGCAAA 57.241 32.000 0.00 0.00 39.03 3.68
1296 1361 7.759489 TTCTTCCACTAGTTGTAATGCAAAT 57.241 32.000 0.00 0.00 39.03 2.32
1297 1362 7.759489 TCTTCCACTAGTTGTAATGCAAATT 57.241 32.000 0.00 0.00 39.03 1.82
1298 1363 7.816640 TCTTCCACTAGTTGTAATGCAAATTC 58.183 34.615 0.00 0.00 39.03 2.17
1299 1364 7.665559 TCTTCCACTAGTTGTAATGCAAATTCT 59.334 33.333 0.00 0.00 39.03 2.40
1300 1365 7.759489 TCCACTAGTTGTAATGCAAATTCTT 57.241 32.000 0.00 0.00 39.03 2.52
1301 1366 8.177119 TCCACTAGTTGTAATGCAAATTCTTT 57.823 30.769 0.00 0.00 39.03 2.52
1302 1367 8.296713 TCCACTAGTTGTAATGCAAATTCTTTC 58.703 33.333 0.00 0.00 39.03 2.62
1303 1368 8.081633 CCACTAGTTGTAATGCAAATTCTTTCA 58.918 33.333 0.00 0.00 39.03 2.69
1304 1369 8.905702 CACTAGTTGTAATGCAAATTCTTTCAC 58.094 33.333 0.00 0.00 39.03 3.18
1305 1370 8.850156 ACTAGTTGTAATGCAAATTCTTTCACT 58.150 29.630 0.00 0.00 39.03 3.41
1308 1373 8.850156 AGTTGTAATGCAAATTCTTTCACTAGT 58.150 29.630 0.00 0.00 39.03 2.57
1309 1374 9.463443 GTTGTAATGCAAATTCTTTCACTAGTT 57.537 29.630 0.00 0.00 39.03 2.24
1310 1375 9.462174 TTGTAATGCAAATTCTTTCACTAGTTG 57.538 29.630 0.00 0.00 33.53 3.16
1311 1376 8.629158 TGTAATGCAAATTCTTTCACTAGTTGT 58.371 29.630 0.00 0.00 0.00 3.32
1408 1473 9.647679 GTCAGTTACTTTCAAGTTAGTTAAAGC 57.352 33.333 0.00 0.00 40.37 3.51
1471 1536 7.953493 TGGGTATCATTTTCCCTACTTTTTCTT 59.047 33.333 0.00 0.00 41.58 2.52
1472 1537 8.251026 GGGTATCATTTTCCCTACTTTTTCTTG 58.749 37.037 0.00 0.00 38.29 3.02
1476 1541 7.422399 TCATTTTCCCTACTTTTTCTTGAACG 58.578 34.615 0.00 0.00 0.00 3.95
1477 1542 6.762702 TTTTCCCTACTTTTTCTTGAACGT 57.237 33.333 0.00 0.00 0.00 3.99
1478 1543 7.862512 TTTTCCCTACTTTTTCTTGAACGTA 57.137 32.000 0.00 0.00 0.00 3.57
1480 1545 4.984161 TCCCTACTTTTTCTTGAACGTACG 59.016 41.667 15.01 15.01 0.00 3.67
1481 1546 4.746611 CCCTACTTTTTCTTGAACGTACGT 59.253 41.667 16.72 16.72 0.00 3.57
1482 1547 5.107722 CCCTACTTTTTCTTGAACGTACGTC 60.108 44.000 23.05 15.21 0.00 4.34
1483 1548 5.459762 CCTACTTTTTCTTGAACGTACGTCA 59.540 40.000 23.05 17.60 0.00 4.35
1485 1550 6.354039 ACTTTTTCTTGAACGTACGTCATT 57.646 33.333 23.05 6.00 0.00 2.57
1486 1551 6.778108 ACTTTTTCTTGAACGTACGTCATTT 58.222 32.000 23.05 5.56 0.00 2.32
1487 1552 7.245604 ACTTTTTCTTGAACGTACGTCATTTT 58.754 30.769 23.05 5.11 0.00 1.82
1488 1553 7.217447 ACTTTTTCTTGAACGTACGTCATTTTG 59.783 33.333 23.05 10.13 0.00 2.44
1489 1554 5.721876 TTCTTGAACGTACGTCATTTTGT 57.278 34.783 23.05 3.37 0.00 2.83
1490 1555 6.825284 TTCTTGAACGTACGTCATTTTGTA 57.175 33.333 23.05 4.74 0.00 2.41
1491 1556 7.410800 TTCTTGAACGTACGTCATTTTGTAT 57.589 32.000 23.05 1.65 0.00 2.29
1492 1557 8.518151 TTCTTGAACGTACGTCATTTTGTATA 57.482 30.769 23.05 3.44 0.00 1.47
1493 1558 7.941865 TCTTGAACGTACGTCATTTTGTATAC 58.058 34.615 23.05 0.00 0.00 1.47
1494 1559 7.809331 TCTTGAACGTACGTCATTTTGTATACT 59.191 33.333 23.05 0.00 0.00 2.12
1495 1560 8.962857 TTGAACGTACGTCATTTTGTATACTA 57.037 30.769 23.05 0.00 0.00 1.82
1543 1608 4.970003 GTCGGCTTGCACATATTTATGTTC 59.030 41.667 0.45 0.00 43.99 3.18
1669 1820 3.446799 CTGCAGAGCTCATCAACTAGTC 58.553 50.000 17.77 0.00 0.00 2.59
1674 1825 1.484240 AGCTCATCAACTAGTCCAGGC 59.516 52.381 0.00 0.00 0.00 4.85
1752 2179 8.200120 ACCGAGGTACTAATAAATTTGTAGGAC 58.800 37.037 13.84 13.84 41.55 3.85
1791 2218 4.021981 TGCATCTAGTAATGTAGCGCATCT 60.022 41.667 11.47 0.00 36.67 2.90
1792 2219 4.560819 GCATCTAGTAATGTAGCGCATCTC 59.439 45.833 11.47 0.00 36.67 2.75
1793 2220 5.621104 GCATCTAGTAATGTAGCGCATCTCT 60.621 44.000 11.47 0.84 36.67 3.10
1855 2290 5.778241 TGTACACTAAAGAGATGGGACTGAA 59.222 40.000 0.00 0.00 0.00 3.02
1935 2370 6.377146 TGAAAGCATTTTCATAGGGGTACTTC 59.623 38.462 0.00 0.00 45.77 3.01
2168 2604 5.638234 CCCTAACAGAAGTACTAGCACAAAC 59.362 44.000 0.00 0.00 0.00 2.93
2178 2614 3.820557 ACTAGCACAAACTGGTGACAAT 58.179 40.909 0.00 0.00 41.32 2.71
2191 2627 5.159273 TGGTGACAATATGCAGACAAGTA 57.841 39.130 0.00 0.00 37.44 2.24
2192 2628 5.744171 TGGTGACAATATGCAGACAAGTAT 58.256 37.500 0.00 0.00 37.44 2.12
2200 2636 7.066284 ACAATATGCAGACAAGTATCCTGAAAC 59.934 37.037 0.00 0.00 0.00 2.78
2207 2643 7.308830 GCAGACAAGTATCCTGAAACTTTCATT 60.309 37.037 4.65 0.00 39.30 2.57
2209 2645 9.793259 AGACAAGTATCCTGAAACTTTCATTTA 57.207 29.630 4.65 0.00 39.30 1.40
2250 2686 1.082756 GACAAAACACGAGCAGCCG 60.083 57.895 0.00 2.15 0.00 5.52
2333 2769 4.999950 CCAGGTTATAGAGATGCACATTCC 59.000 45.833 0.00 0.00 0.00 3.01
2363 2801 5.891551 CCATAACAATGGCCCTTATATACCC 59.108 44.000 0.00 0.00 34.56 3.69
2364 2802 6.297594 CCATAACAATGGCCCTTATATACCCT 60.298 42.308 0.00 0.00 34.56 4.34
2424 2862 6.799512 ACAGATTGCAAGCAAGATAAATACC 58.200 36.000 18.24 0.00 39.47 2.73
2490 2928 7.220740 TGAATAACACATTTCGGAGGCATATA 58.779 34.615 0.00 0.00 0.00 0.86
2491 2929 7.882791 TGAATAACACATTTCGGAGGCATATAT 59.117 33.333 0.00 0.00 0.00 0.86
2492 2930 5.947228 AACACATTTCGGAGGCATATATG 57.053 39.130 8.45 8.45 0.00 1.78
2493 2931 4.973168 ACACATTTCGGAGGCATATATGT 58.027 39.130 14.14 0.00 0.00 2.29
2494 2932 5.376625 ACACATTTCGGAGGCATATATGTT 58.623 37.500 14.14 3.33 0.00 2.71
2495 2933 5.827797 ACACATTTCGGAGGCATATATGTTT 59.172 36.000 14.14 2.98 0.00 2.83
2496 2934 6.321181 ACACATTTCGGAGGCATATATGTTTT 59.679 34.615 14.14 0.56 0.00 2.43
2497 2935 6.638063 CACATTTCGGAGGCATATATGTTTTG 59.362 38.462 14.14 1.97 0.00 2.44
2498 2936 4.829064 TTCGGAGGCATATATGTTTTGC 57.171 40.909 14.14 0.63 35.64 3.68
2532 2970 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
2533 2971 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
2534 2972 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
2535 2973 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
2541 2979 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
2612 3077 0.394565 AATAGGTGATGGAGGAGCGC 59.605 55.000 0.00 0.00 0.00 5.92
2684 3149 2.835764 AGCATTTGACAAGCCATTCCAT 59.164 40.909 0.00 0.00 0.00 3.41
2705 3170 5.163385 CCATCCACAAAGGCAATTATCACAT 60.163 40.000 0.00 0.00 37.29 3.21
2774 3239 9.935682 GAGCAAACTTATCATTAATCAATCGAA 57.064 29.630 0.00 0.00 0.00 3.71
2919 3395 4.708601 CGTTGAATAGAAACGGGAACTTG 58.291 43.478 0.93 0.00 45.05 3.16
2920 3396 4.473199 GTTGAATAGAAACGGGAACTTGC 58.527 43.478 0.00 0.00 0.00 4.01
2921 3397 4.015872 TGAATAGAAACGGGAACTTGCT 57.984 40.909 0.00 0.00 0.00 3.91
2922 3398 4.394729 TGAATAGAAACGGGAACTTGCTT 58.605 39.130 0.00 0.00 0.00 3.91
2923 3399 4.215399 TGAATAGAAACGGGAACTTGCTTG 59.785 41.667 0.00 0.00 0.00 4.01
2938 3414 1.115326 GCTTGGAGCCAACAACCCTT 61.115 55.000 0.00 0.00 34.48 3.95
2945 3421 1.004679 CCAACAACCCTTGCATGCC 60.005 57.895 16.68 0.00 0.00 4.40
2947 3423 1.255882 CAACAACCCTTGCATGCCTA 58.744 50.000 16.68 1.93 0.00 3.93
2948 3424 1.826720 CAACAACCCTTGCATGCCTAT 59.173 47.619 16.68 0.00 0.00 2.57
2949 3425 1.477553 ACAACCCTTGCATGCCTATG 58.522 50.000 16.68 8.21 37.36 2.23
2951 3427 2.025416 ACAACCCTTGCATGCCTATGTA 60.025 45.455 16.68 0.00 36.65 2.29
2952 3428 3.023119 CAACCCTTGCATGCCTATGTAA 58.977 45.455 16.68 0.00 36.70 2.41
2953 3429 3.600448 ACCCTTGCATGCCTATGTAAT 57.400 42.857 16.68 0.00 38.07 1.89
2954 3430 3.490348 ACCCTTGCATGCCTATGTAATC 58.510 45.455 16.68 0.00 38.07 1.75
2956 3432 2.485426 CCTTGCATGCCTATGTAATCGG 59.515 50.000 16.68 0.00 38.07 4.18
2971 3458 7.801716 ATGTAATCGGCTAGCTTTAATTTGA 57.198 32.000 15.72 0.83 0.00 2.69
3008 3497 4.744237 AGTAGTAGTACACAAAGTGGGGA 58.256 43.478 10.33 0.00 37.94 4.81
3064 3564 9.849166 GATTAATTCAGTGCTAGAGTATACTCC 57.151 37.037 25.93 13.56 43.88 3.85
3065 3565 6.658188 AATTCAGTGCTAGAGTATACTCCC 57.342 41.667 25.93 16.27 43.88 4.30
3066 3566 5.390087 TTCAGTGCTAGAGTATACTCCCT 57.610 43.478 25.93 13.43 43.88 4.20
3067 3567 4.975631 TCAGTGCTAGAGTATACTCCCTC 58.024 47.826 25.93 16.19 43.88 4.30
3068 3568 4.076394 CAGTGCTAGAGTATACTCCCTCC 58.924 52.174 25.93 14.14 43.88 4.30
3069 3569 3.075884 GTGCTAGAGTATACTCCCTCCG 58.924 54.545 25.93 12.80 43.88 4.63
3070 3570 2.709934 TGCTAGAGTATACTCCCTCCGT 59.290 50.000 25.93 11.43 43.88 4.69
3071 3571 3.137913 TGCTAGAGTATACTCCCTCCGTT 59.862 47.826 25.93 10.78 43.88 4.44
3072 3572 3.752747 GCTAGAGTATACTCCCTCCGTTC 59.247 52.174 25.93 2.40 43.88 3.95
3073 3573 3.226682 AGAGTATACTCCCTCCGTTCC 57.773 52.381 25.93 1.42 43.88 3.62
3074 3574 2.784682 AGAGTATACTCCCTCCGTTCCT 59.215 50.000 25.93 3.97 43.88 3.36
3075 3575 3.148412 GAGTATACTCCCTCCGTTCCTC 58.852 54.545 20.40 0.00 37.02 3.71
3076 3576 2.158490 AGTATACTCCCTCCGTTCCTCC 60.158 54.545 0.00 0.00 0.00 4.30
3077 3577 0.467659 ATACTCCCTCCGTTCCTCCG 60.468 60.000 0.00 0.00 0.00 4.63
3078 3578 1.856539 TACTCCCTCCGTTCCTCCGT 61.857 60.000 0.00 0.00 0.00 4.69
3079 3579 1.982938 CTCCCTCCGTTCCTCCGTT 60.983 63.158 0.00 0.00 0.00 4.44
3080 3580 1.946475 CTCCCTCCGTTCCTCCGTTC 61.946 65.000 0.00 0.00 0.00 3.95
3081 3581 2.181021 CCTCCGTTCCTCCGTTCG 59.819 66.667 0.00 0.00 0.00 3.95
3082 3582 2.633509 CCTCCGTTCCTCCGTTCGT 61.634 63.158 0.00 0.00 0.00 3.85
3083 3583 1.443872 CTCCGTTCCTCCGTTCGTG 60.444 63.158 0.00 0.00 0.00 4.35
3084 3584 1.859427 CTCCGTTCCTCCGTTCGTGA 61.859 60.000 0.00 0.00 0.00 4.35
3085 3585 1.007038 CCGTTCCTCCGTTCGTGAA 60.007 57.895 0.00 0.00 0.00 3.18
3086 3586 0.389426 CCGTTCCTCCGTTCGTGAAT 60.389 55.000 0.00 0.00 0.00 2.57
3087 3587 1.135315 CCGTTCCTCCGTTCGTGAATA 60.135 52.381 0.00 0.00 0.00 1.75
3088 3588 2.598589 CGTTCCTCCGTTCGTGAATAA 58.401 47.619 0.00 0.00 0.00 1.40
3089 3589 2.597305 CGTTCCTCCGTTCGTGAATAAG 59.403 50.000 0.00 0.00 0.00 1.73
3090 3590 3.582780 GTTCCTCCGTTCGTGAATAAGT 58.417 45.455 0.00 0.00 0.00 2.24
3091 3591 3.226346 TCCTCCGTTCGTGAATAAGTG 57.774 47.619 0.00 0.00 0.00 3.16
3092 3592 2.559668 TCCTCCGTTCGTGAATAAGTGT 59.440 45.455 0.00 0.00 0.00 3.55
3093 3593 3.758023 TCCTCCGTTCGTGAATAAGTGTA 59.242 43.478 0.00 0.00 0.00 2.90
3094 3594 3.855950 CCTCCGTTCGTGAATAAGTGTAC 59.144 47.826 0.00 0.00 0.00 2.90
3095 3595 4.478699 CTCCGTTCGTGAATAAGTGTACA 58.521 43.478 0.00 0.00 0.00 2.90
3096 3596 5.063180 TCCGTTCGTGAATAAGTGTACAT 57.937 39.130 0.00 0.00 0.00 2.29
3097 3597 5.097529 TCCGTTCGTGAATAAGTGTACATC 58.902 41.667 0.00 0.00 0.00 3.06
3098 3598 5.100259 CCGTTCGTGAATAAGTGTACATCT 58.900 41.667 0.00 0.00 0.00 2.90
3099 3599 6.093909 TCCGTTCGTGAATAAGTGTACATCTA 59.906 38.462 0.00 0.00 0.00 1.98
3100 3600 6.414109 CCGTTCGTGAATAAGTGTACATCTAG 59.586 42.308 0.00 0.00 0.00 2.43
3101 3601 6.965500 CGTTCGTGAATAAGTGTACATCTAGT 59.035 38.462 0.00 0.00 0.00 2.57
3102 3602 7.484007 CGTTCGTGAATAAGTGTACATCTAGTT 59.516 37.037 0.00 0.00 0.00 2.24
3103 3603 9.136952 GTTCGTGAATAAGTGTACATCTAGTTT 57.863 33.333 0.00 0.00 0.00 2.66
3104 3604 9.701098 TTCGTGAATAAGTGTACATCTAGTTTT 57.299 29.630 0.00 0.00 0.00 2.43
3105 3605 9.701098 TCGTGAATAAGTGTACATCTAGTTTTT 57.299 29.630 0.00 0.00 0.00 1.94
3106 3606 9.741168 CGTGAATAAGTGTACATCTAGTTTTTG 57.259 33.333 0.00 0.00 0.00 2.44
3111 3611 9.787435 ATAAGTGTACATCTAGTTTTTGTTCCA 57.213 29.630 0.00 0.00 0.00 3.53
3112 3612 8.514330 AAGTGTACATCTAGTTTTTGTTCCAA 57.486 30.769 0.00 0.00 0.00 3.53
3113 3613 8.154649 AGTGTACATCTAGTTTTTGTTCCAAG 57.845 34.615 0.00 0.00 0.00 3.61
3114 3614 7.773690 AGTGTACATCTAGTTTTTGTTCCAAGT 59.226 33.333 0.00 0.00 0.00 3.16
3115 3615 8.403236 GTGTACATCTAGTTTTTGTTCCAAGTT 58.597 33.333 0.00 0.00 0.00 2.66
3116 3616 9.616156 TGTACATCTAGTTTTTGTTCCAAGTTA 57.384 29.630 0.00 0.00 0.00 2.24
3177 3677 9.905713 AGTAGTAACATATGACATCAAATTGGT 57.094 29.630 10.38 0.00 0.00 3.67
3207 3707 9.834628 TTATCAAAGTACATTTCAAAACGGATC 57.165 29.630 0.00 0.00 0.00 3.36
3208 3708 7.504924 TCAAAGTACATTTCAAAACGGATCT 57.495 32.000 0.00 0.00 0.00 2.75
3209 3709 8.610248 TCAAAGTACATTTCAAAACGGATCTA 57.390 30.769 0.00 0.00 0.00 1.98
3210 3710 8.717821 TCAAAGTACATTTCAAAACGGATCTAG 58.282 33.333 0.00 0.00 0.00 2.43
3211 3711 8.504005 CAAAGTACATTTCAAAACGGATCTAGT 58.496 33.333 0.00 0.00 0.00 2.57
3212 3712 7.596749 AGTACATTTCAAAACGGATCTAGTG 57.403 36.000 0.00 0.00 0.00 2.74
3213 3713 7.383687 AGTACATTTCAAAACGGATCTAGTGA 58.616 34.615 0.00 0.00 0.00 3.41
3214 3714 8.041323 AGTACATTTCAAAACGGATCTAGTGAT 58.959 33.333 0.00 0.00 35.26 3.06
3215 3715 9.309516 GTACATTTCAAAACGGATCTAGTGATA 57.690 33.333 0.00 0.00 32.19 2.15
3216 3716 8.197988 ACATTTCAAAACGGATCTAGTGATAC 57.802 34.615 0.00 0.00 32.19 2.24
3217 3717 8.041323 ACATTTCAAAACGGATCTAGTGATACT 58.959 33.333 0.00 0.00 31.34 2.12
3218 3718 9.529325 CATTTCAAAACGGATCTAGTGATACTA 57.471 33.333 0.00 0.00 31.34 1.82
3227 3727 9.352191 ACGGATCTAGTGATACTAATTTACTGT 57.648 33.333 0.00 0.00 31.34 3.55
3228 3728 9.828852 CGGATCTAGTGATACTAATTTACTGTC 57.171 37.037 0.00 0.00 31.34 3.51
3229 3729 9.828852 GGATCTAGTGATACTAATTTACTGTCG 57.171 37.037 0.00 0.00 32.19 4.35
3247 3747 9.654417 TTACTGTCGTAAATGCTTTTACTTTTC 57.346 29.630 24.51 15.43 43.28 2.29
3248 3748 7.927048 ACTGTCGTAAATGCTTTTACTTTTCT 58.073 30.769 24.51 8.70 43.28 2.52
3249 3749 8.068380 ACTGTCGTAAATGCTTTTACTTTTCTC 58.932 33.333 24.51 13.08 43.28 2.87
3250 3750 8.149973 TGTCGTAAATGCTTTTACTTTTCTCT 57.850 30.769 24.51 0.00 43.28 3.10
3251 3751 9.263538 TGTCGTAAATGCTTTTACTTTTCTCTA 57.736 29.630 24.51 7.30 43.28 2.43
3252 3752 9.742552 GTCGTAAATGCTTTTACTTTTCTCTAG 57.257 33.333 24.51 11.63 43.28 2.43
3253 3753 9.701098 TCGTAAATGCTTTTACTTTTCTCTAGA 57.299 29.630 24.51 13.18 43.28 2.43
3260 3760 8.621286 TGCTTTTACTTTTCTCTAGAAAGTTGG 58.379 33.333 12.37 4.21 43.90 3.77
3261 3761 8.622157 GCTTTTACTTTTCTCTAGAAAGTTGGT 58.378 33.333 12.37 6.51 43.90 3.67
3263 3763 9.675464 TTTTACTTTTCTCTAGAAAGTTGGTCA 57.325 29.630 12.37 0.00 43.90 4.02
3264 3764 9.675464 TTTACTTTTCTCTAGAAAGTTGGTCAA 57.325 29.630 12.37 0.37 43.90 3.18
3265 3765 9.675464 TTACTTTTCTCTAGAAAGTTGGTCAAA 57.325 29.630 12.37 0.00 43.90 2.69
3266 3766 8.214721 ACTTTTCTCTAGAAAGTTGGTCAAAG 57.785 34.615 5.38 0.76 43.90 2.77
3267 3767 7.829706 ACTTTTCTCTAGAAAGTTGGTCAAAGT 59.170 33.333 5.38 1.30 43.90 2.66
3268 3768 8.575649 TTTTCTCTAGAAAGTTGGTCAAAGTT 57.424 30.769 5.38 0.00 43.90 2.66
3269 3769 8.575649 TTTCTCTAGAAAGTTGGTCAAAGTTT 57.424 30.769 1.00 0.00 42.84 2.66
3270 3770 8.575649 TTCTCTAGAAAGTTGGTCAAAGTTTT 57.424 30.769 0.00 0.00 40.72 2.43
3271 3771 9.675464 TTCTCTAGAAAGTTGGTCAAAGTTTTA 57.325 29.630 0.00 0.00 40.72 1.52
3272 3772 9.675464 TCTCTAGAAAGTTGGTCAAAGTTTTAA 57.325 29.630 0.00 0.00 40.72 1.52
3314 3814 9.779237 CAAAAGTTAGATGTATACTTATTCGCG 57.221 33.333 0.00 0.00 32.17 5.87
3315 3815 8.516811 AAAGTTAGATGTATACTTATTCGCGG 57.483 34.615 6.13 0.00 32.17 6.46
3316 3816 7.444629 AGTTAGATGTATACTTATTCGCGGA 57.555 36.000 6.13 0.00 0.00 5.54
3317 3817 7.303998 AGTTAGATGTATACTTATTCGCGGAC 58.696 38.462 6.13 0.00 0.00 4.79
3318 3818 4.720090 AGATGTATACTTATTCGCGGACG 58.280 43.478 6.13 0.00 42.01 4.79
3319 3819 3.272439 TGTATACTTATTCGCGGACGG 57.728 47.619 6.13 0.00 40.63 4.79
3320 3820 2.877786 TGTATACTTATTCGCGGACGGA 59.122 45.455 6.13 0.00 40.63 4.69
3321 3821 2.701073 ATACTTATTCGCGGACGGAG 57.299 50.000 6.13 0.00 40.63 4.63
3322 3822 0.664761 TACTTATTCGCGGACGGAGG 59.335 55.000 6.13 0.00 40.63 4.30
3323 3823 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
3324 3824 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
3325 3825 1.731433 TTATTCGCGGACGGAGGGAG 61.731 60.000 6.13 0.00 40.63 4.30
3351 3851 5.972107 ATTCAAGGAACAAAGATGGACAG 57.028 39.130 0.00 0.00 0.00 3.51
3533 4040 1.269465 ACTGATGATGCGAGACCGATG 60.269 52.381 0.00 0.00 38.22 3.84
3534 4041 1.000938 CTGATGATGCGAGACCGATGA 60.001 52.381 0.00 0.00 38.22 2.92
3535 4042 1.408702 TGATGATGCGAGACCGATGAA 59.591 47.619 0.00 0.00 38.22 2.57
3536 4043 2.159114 TGATGATGCGAGACCGATGAAA 60.159 45.455 0.00 0.00 38.22 2.69
3540 4047 1.926561 TGCGAGACCGATGAAAGATG 58.073 50.000 0.00 0.00 38.22 2.90
3654 4161 4.794439 TGCATGCGCGCGTAGTCT 62.794 61.111 32.35 9.52 42.97 3.24
3813 4321 9.549984 ACTAAAGACTAGGAGGATAAAGAAAGT 57.450 33.333 0.00 0.00 0.00 2.66
3922 4434 1.079875 CCGCATTTGCAACCATGAGC 61.080 55.000 14.03 4.95 42.21 4.26
4009 4528 5.393124 GTTTGATATCCATGTGTGTGTGTG 58.607 41.667 0.00 0.00 0.00 3.82
4010 4529 4.284829 TGATATCCATGTGTGTGTGTGT 57.715 40.909 0.00 0.00 0.00 3.72
4011 4530 4.002316 TGATATCCATGTGTGTGTGTGTG 58.998 43.478 0.00 0.00 0.00 3.82
4012 4531 2.346766 ATCCATGTGTGTGTGTGTGT 57.653 45.000 0.00 0.00 0.00 3.72
4026 4545 1.342496 TGTGTGTTCTCTGAGAGGCAG 59.658 52.381 9.97 0.00 46.31 4.85
4037 4556 3.990318 TGAGAGGCAGACATATACACG 57.010 47.619 0.00 0.00 0.00 4.49
4049 4568 1.466856 TATACACGTCCAGGTCGCTT 58.533 50.000 5.96 0.00 0.00 4.68
4089 4608 5.782047 ACTCTTGACTCAGATCTGAAACTG 58.218 41.667 25.09 16.04 39.39 3.16
4199 4718 3.696548 GTGGGCTGGGATTTTCTTTCTAG 59.303 47.826 0.00 0.00 0.00 2.43
4332 5115 5.868258 GGAGTACAGTTTACTTAGTGGAAGC 59.132 44.000 0.00 0.00 38.92 3.86
4333 5116 6.415206 AGTACAGTTTACTTAGTGGAAGCA 57.585 37.500 0.00 0.00 38.92 3.91
4334 5117 7.005709 AGTACAGTTTACTTAGTGGAAGCAT 57.994 36.000 0.00 0.00 38.92 3.79
4335 5118 6.874134 AGTACAGTTTACTTAGTGGAAGCATG 59.126 38.462 0.00 0.00 38.92 4.06
4377 5160 4.305989 TGCAACTTGAACAAATGACTCC 57.694 40.909 0.00 0.00 0.00 3.85
4453 5242 5.221722 GGATGATTAGGTAGGCTTGTGATGA 60.222 44.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.698309 GTATATATAGCTTCATATTCCGCACAT 57.302 33.333 0.00 0.00 0.00 3.21
1 2 8.914011 AGTATATATAGCTTCATATTCCGCACA 58.086 33.333 0.00 0.00 0.00 4.57
2 3 9.186323 CAGTATATATAGCTTCATATTCCGCAC 57.814 37.037 0.00 0.00 0.00 5.34
3 4 8.914011 ACAGTATATATAGCTTCATATTCCGCA 58.086 33.333 0.00 0.00 0.00 5.69
19 20 9.682465 TTCGGACATAGCTTAGACAGTATATAT 57.318 33.333 0.00 0.00 0.00 0.86
20 21 9.163899 CTTCGGACATAGCTTAGACAGTATATA 57.836 37.037 0.00 0.00 0.00 0.86
21 22 7.362229 GCTTCGGACATAGCTTAGACAGTATAT 60.362 40.741 0.00 0.00 34.57 0.86
22 23 6.072618 GCTTCGGACATAGCTTAGACAGTATA 60.073 42.308 0.00 0.00 34.57 1.47
23 24 5.278561 GCTTCGGACATAGCTTAGACAGTAT 60.279 44.000 0.00 0.00 34.57 2.12
24 25 4.036498 GCTTCGGACATAGCTTAGACAGTA 59.964 45.833 0.00 0.00 34.57 2.74
25 26 3.181485 GCTTCGGACATAGCTTAGACAGT 60.181 47.826 0.00 0.00 34.57 3.55
26 27 3.181486 TGCTTCGGACATAGCTTAGACAG 60.181 47.826 0.00 0.00 38.22 3.51
27 28 2.758423 TGCTTCGGACATAGCTTAGACA 59.242 45.455 0.00 0.00 38.22 3.41
28 29 3.117046 GTGCTTCGGACATAGCTTAGAC 58.883 50.000 0.00 0.00 38.22 2.59
29 30 2.100916 GGTGCTTCGGACATAGCTTAGA 59.899 50.000 0.00 0.00 38.22 2.10
30 31 2.159099 TGGTGCTTCGGACATAGCTTAG 60.159 50.000 0.00 0.00 38.22 2.18
31 32 1.828595 TGGTGCTTCGGACATAGCTTA 59.171 47.619 0.00 0.00 38.22 3.09
32 33 0.613260 TGGTGCTTCGGACATAGCTT 59.387 50.000 0.00 0.00 38.22 3.74
33 34 0.613260 TTGGTGCTTCGGACATAGCT 59.387 50.000 0.00 0.00 38.22 3.32
34 35 1.448985 TTTGGTGCTTCGGACATAGC 58.551 50.000 0.00 0.00 37.89 2.97
35 36 5.116180 TCTAATTTGGTGCTTCGGACATAG 58.884 41.667 0.00 0.00 0.00 2.23
36 37 5.092554 TCTAATTTGGTGCTTCGGACATA 57.907 39.130 0.00 0.00 0.00 2.29
37 38 3.950397 TCTAATTTGGTGCTTCGGACAT 58.050 40.909 0.00 0.00 0.00 3.06
38 39 3.410631 TCTAATTTGGTGCTTCGGACA 57.589 42.857 0.00 0.00 0.00 4.02
39 40 3.119955 GGTTCTAATTTGGTGCTTCGGAC 60.120 47.826 0.00 0.00 0.00 4.79
40 41 3.078837 GGTTCTAATTTGGTGCTTCGGA 58.921 45.455 0.00 0.00 0.00 4.55
41 42 2.817258 TGGTTCTAATTTGGTGCTTCGG 59.183 45.455 0.00 0.00 0.00 4.30
42 43 3.670627 GCTGGTTCTAATTTGGTGCTTCG 60.671 47.826 0.00 0.00 0.00 3.79
43 44 3.507622 AGCTGGTTCTAATTTGGTGCTTC 59.492 43.478 0.00 0.00 0.00 3.86
44 45 3.500343 AGCTGGTTCTAATTTGGTGCTT 58.500 40.909 0.00 0.00 0.00 3.91
45 46 3.160679 AGCTGGTTCTAATTTGGTGCT 57.839 42.857 0.00 0.00 0.00 4.40
46 47 3.181496 GCTAGCTGGTTCTAATTTGGTGC 60.181 47.826 7.70 0.00 0.00 5.01
47 48 4.009675 TGCTAGCTGGTTCTAATTTGGTG 58.990 43.478 17.23 0.00 0.00 4.17
48 49 4.301072 TGCTAGCTGGTTCTAATTTGGT 57.699 40.909 17.23 0.00 0.00 3.67
49 50 4.641989 ACATGCTAGCTGGTTCTAATTTGG 59.358 41.667 17.23 0.00 0.00 3.28
50 51 5.124457 ACACATGCTAGCTGGTTCTAATTTG 59.876 40.000 17.23 4.32 0.00 2.32
51 52 5.256474 ACACATGCTAGCTGGTTCTAATTT 58.744 37.500 17.23 0.00 0.00 1.82
52 53 4.848357 ACACATGCTAGCTGGTTCTAATT 58.152 39.130 17.23 0.00 0.00 1.40
53 54 4.494091 ACACATGCTAGCTGGTTCTAAT 57.506 40.909 17.23 0.00 0.00 1.73
54 55 3.981071 ACACATGCTAGCTGGTTCTAA 57.019 42.857 17.23 0.00 0.00 2.10
55 56 3.384789 CCTACACATGCTAGCTGGTTCTA 59.615 47.826 17.23 5.14 0.00 2.10
56 57 2.169352 CCTACACATGCTAGCTGGTTCT 59.831 50.000 17.23 4.28 0.00 3.01
57 58 2.555199 CCTACACATGCTAGCTGGTTC 58.445 52.381 17.23 0.00 0.00 3.62
58 59 1.407437 GCCTACACATGCTAGCTGGTT 60.407 52.381 17.23 7.53 0.00 3.67
59 60 0.179000 GCCTACACATGCTAGCTGGT 59.821 55.000 17.23 11.06 0.00 4.00
60 61 0.877649 CGCCTACACATGCTAGCTGG 60.878 60.000 17.23 10.37 0.00 4.85
61 62 0.103026 TCGCCTACACATGCTAGCTG 59.897 55.000 17.23 13.70 0.00 4.24
62 63 0.103208 GTCGCCTACACATGCTAGCT 59.897 55.000 17.23 0.00 0.00 3.32
63 64 0.103208 AGTCGCCTACACATGCTAGC 59.897 55.000 8.10 8.10 0.00 3.42
64 65 3.504134 AGATAGTCGCCTACACATGCTAG 59.496 47.826 0.00 0.00 0.00 3.42
65 66 3.487372 AGATAGTCGCCTACACATGCTA 58.513 45.455 0.00 0.00 0.00 3.49
66 67 2.311463 AGATAGTCGCCTACACATGCT 58.689 47.619 0.00 0.00 0.00 3.79
67 68 2.802787 AGATAGTCGCCTACACATGC 57.197 50.000 0.00 0.00 0.00 4.06
68 69 4.230657 GCTTAGATAGTCGCCTACACATG 58.769 47.826 0.00 0.00 0.00 3.21
69 70 3.256136 GGCTTAGATAGTCGCCTACACAT 59.744 47.826 0.00 0.00 39.42 3.21
70 71 2.621998 GGCTTAGATAGTCGCCTACACA 59.378 50.000 0.00 0.00 39.42 3.72
71 72 2.621998 TGGCTTAGATAGTCGCCTACAC 59.378 50.000 0.00 0.00 42.90 2.90
72 73 2.885266 CTGGCTTAGATAGTCGCCTACA 59.115 50.000 0.00 0.00 42.90 2.74
73 74 2.885894 ACTGGCTTAGATAGTCGCCTAC 59.114 50.000 0.00 0.00 42.90 3.18
74 75 3.225177 ACTGGCTTAGATAGTCGCCTA 57.775 47.619 0.00 0.00 42.90 3.93
75 76 2.074729 ACTGGCTTAGATAGTCGCCT 57.925 50.000 0.00 0.00 42.90 5.52
76 77 2.892784 AACTGGCTTAGATAGTCGCC 57.107 50.000 0.00 0.00 42.78 5.54
77 78 4.291783 CAGTAACTGGCTTAGATAGTCGC 58.708 47.826 0.00 0.00 0.00 5.19
78 79 4.861210 CCAGTAACTGGCTTAGATAGTCG 58.139 47.826 0.00 0.00 45.13 4.18
91 92 3.056107 TGGTAAGTAGCTGCCAGTAACTG 60.056 47.826 0.00 0.00 0.00 3.16
132 133 5.412594 ACACAGCATTATGAGTGATCGTTTT 59.587 36.000 19.66 0.00 35.97 2.43
144 145 3.806521 GCTACCTGAGACACAGCATTATG 59.193 47.826 0.00 0.00 44.52 1.90
145 146 3.452264 TGCTACCTGAGACACAGCATTAT 59.548 43.478 0.00 0.00 44.52 1.28
267 281 1.484240 GCCTAGGCAACAGACTCATCT 59.516 52.381 29.33 0.00 41.49 2.90
361 383 0.250640 CCATGGATAGAGGCAGGCAC 60.251 60.000 5.56 0.00 0.00 5.01
394 416 1.203087 TCGGGGGTGTGTCTAAGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
399 421 1.719529 TTCTTCGGGGGTGTGTCTAA 58.280 50.000 0.00 0.00 0.00 2.10
401 423 0.613777 GATTCTTCGGGGGTGTGTCT 59.386 55.000 0.00 0.00 0.00 3.41
404 426 1.026718 GCAGATTCTTCGGGGGTGTG 61.027 60.000 0.00 0.00 0.00 3.82
428 450 3.682315 GTCGCGGCACATCGATCG 61.682 66.667 5.47 9.36 35.65 3.69
429 451 3.330853 GGTCGCGGCACATCGATC 61.331 66.667 14.93 0.00 35.65 3.69
452 475 2.515901 GAAACTTCTCGTCGCACGCG 62.516 60.000 3.53 3.53 42.21 6.01
621 644 1.548269 TGACTGTGTGTGTCTGTGTGA 59.452 47.619 0.00 0.00 35.63 3.58
628 655 3.066380 TGCATGTATGACTGTGTGTGTC 58.934 45.455 0.00 0.00 35.21 3.67
664 691 9.516314 GTACACGCTTTCAGCATATATATCATA 57.484 33.333 0.00 0.00 42.58 2.15
667 694 7.009631 CCAGTACACGCTTTCAGCATATATATC 59.990 40.741 0.00 0.00 42.58 1.63
668 695 6.813649 CCAGTACACGCTTTCAGCATATATAT 59.186 38.462 0.00 0.00 42.58 0.86
669 696 6.156519 CCAGTACACGCTTTCAGCATATATA 58.843 40.000 0.00 0.00 42.58 0.86
694 723 2.039216 TCTAAGCCCACGTCCAAATCAA 59.961 45.455 0.00 0.00 0.00 2.57
879 928 6.805713 ACCAATAGTTGCACCATTTTATAGC 58.194 36.000 0.00 0.00 0.00 2.97
953 1002 3.263681 TCTCCCTCTCTCTCTAACACGAA 59.736 47.826 0.00 0.00 0.00 3.85
955 1004 3.118555 TCTCTCCCTCTCTCTCTAACACG 60.119 52.174 0.00 0.00 0.00 4.49
956 1005 4.163458 TCTCTCTCCCTCTCTCTCTAACAC 59.837 50.000 0.00 0.00 0.00 3.32
958 1007 5.308237 AGATCTCTCTCCCTCTCTCTCTAAC 59.692 48.000 0.00 0.00 0.00 2.34
959 1008 5.476983 AGATCTCTCTCCCTCTCTCTCTAA 58.523 45.833 0.00 0.00 0.00 2.10
971 1029 2.234414 GCCATGGATGAGATCTCTCTCC 59.766 54.545 25.96 25.96 46.28 3.71
980 1038 3.891805 TCTCTCTAGCCATGGATGAGA 57.108 47.619 22.44 22.44 33.45 3.27
1069 1130 1.078759 CTAGAACCGCAGAGGCAACG 61.079 60.000 0.00 0.00 46.52 4.10
1239 1304 1.209998 GGCGAAGTCGATCTTAAGCC 58.790 55.000 19.92 19.92 45.46 4.35
1289 1354 8.396272 ACTACAACTAGTGAAAGAATTTGCAT 57.604 30.769 0.00 0.00 39.27 3.96
1290 1355 7.801716 ACTACAACTAGTGAAAGAATTTGCA 57.198 32.000 0.00 0.00 39.27 4.08
1408 1473 1.467920 CAGGGGCTTGCTTAGAAAGG 58.532 55.000 1.69 0.00 0.00 3.11
1471 1536 8.236586 ACTAGTATACAAAATGACGTACGTTCA 58.763 33.333 23.70 20.43 0.00 3.18
1472 1537 8.606727 ACTAGTATACAAAATGACGTACGTTC 57.393 34.615 23.70 15.56 0.00 3.95
1476 1541 9.017669 CCTTGACTAGTATACAAAATGACGTAC 57.982 37.037 5.50 0.00 0.00 3.67
1477 1542 7.703621 GCCTTGACTAGTATACAAAATGACGTA 59.296 37.037 5.50 0.00 0.00 3.57
1478 1543 6.534079 GCCTTGACTAGTATACAAAATGACGT 59.466 38.462 5.50 0.00 0.00 4.34
1480 1545 7.843490 TGCCTTGACTAGTATACAAAATGAC 57.157 36.000 5.50 0.00 0.00 3.06
1481 1546 7.065803 GCTTGCCTTGACTAGTATACAAAATGA 59.934 37.037 5.50 0.00 0.00 2.57
1482 1547 7.066284 AGCTTGCCTTGACTAGTATACAAAATG 59.934 37.037 5.50 0.00 0.00 2.32
1483 1548 7.112779 AGCTTGCCTTGACTAGTATACAAAAT 58.887 34.615 5.50 0.00 0.00 1.82
1485 1550 6.049955 AGCTTGCCTTGACTAGTATACAAA 57.950 37.500 5.50 0.00 0.00 2.83
1486 1551 5.677319 AGCTTGCCTTGACTAGTATACAA 57.323 39.130 5.50 0.00 0.00 2.41
1487 1552 5.220989 CGTAGCTTGCCTTGACTAGTATACA 60.221 44.000 5.50 0.00 0.00 2.29
1488 1553 5.213675 CGTAGCTTGCCTTGACTAGTATAC 58.786 45.833 0.00 0.00 0.00 1.47
1489 1554 5.434352 CGTAGCTTGCCTTGACTAGTATA 57.566 43.478 0.00 0.00 0.00 1.47
1490 1555 4.308899 CGTAGCTTGCCTTGACTAGTAT 57.691 45.455 0.00 0.00 0.00 2.12
1491 1556 3.777465 CGTAGCTTGCCTTGACTAGTA 57.223 47.619 0.00 0.00 0.00 1.82
1492 1557 2.656560 CGTAGCTTGCCTTGACTAGT 57.343 50.000 0.00 0.00 0.00 2.57
1628 1779 7.821846 TCTGCAGGAAACAAATAACAACTTTTT 59.178 29.630 15.13 0.00 0.00 1.94
1674 1825 2.639327 CCTTGCTGGGCTTTTCGGG 61.639 63.158 0.00 0.00 0.00 5.14
1752 2179 2.795973 CATGGATGTGCACGCCAG 59.204 61.111 28.02 19.00 34.74 4.85
1855 2290 4.223144 AGATGTTGCACCCCTAAAAGTTT 58.777 39.130 0.00 0.00 0.00 2.66
2154 2590 3.386726 TGTCACCAGTTTGTGCTAGTACT 59.613 43.478 12.42 0.00 36.17 2.73
2158 2594 5.674569 GCATATTGTCACCAGTTTGTGCTAG 60.675 44.000 0.00 0.00 36.17 3.42
2159 2595 4.155826 GCATATTGTCACCAGTTTGTGCTA 59.844 41.667 0.00 0.00 36.17 3.49
2160 2596 3.057315 GCATATTGTCACCAGTTTGTGCT 60.057 43.478 0.00 0.00 36.17 4.40
2168 2604 4.005650 ACTTGTCTGCATATTGTCACCAG 58.994 43.478 0.00 0.00 0.00 4.00
2214 2650 7.824289 TGTTTTGTCGATCTCTGATAGGAAATT 59.176 33.333 0.00 0.00 0.00 1.82
2215 2651 7.278868 GTGTTTTGTCGATCTCTGATAGGAAAT 59.721 37.037 0.00 0.00 0.00 2.17
2216 2652 6.590292 GTGTTTTGTCGATCTCTGATAGGAAA 59.410 38.462 0.00 0.00 0.00 3.13
2217 2653 6.100004 GTGTTTTGTCGATCTCTGATAGGAA 58.900 40.000 0.00 0.00 0.00 3.36
2218 2654 5.651530 GTGTTTTGTCGATCTCTGATAGGA 58.348 41.667 0.00 0.00 0.00 2.94
2219 2655 4.500837 CGTGTTTTGTCGATCTCTGATAGG 59.499 45.833 0.00 0.00 0.00 2.57
2220 2656 5.332707 TCGTGTTTTGTCGATCTCTGATAG 58.667 41.667 0.00 0.00 0.00 2.08
2221 2657 5.305139 TCGTGTTTTGTCGATCTCTGATA 57.695 39.130 0.00 0.00 0.00 2.15
2250 2686 1.078567 AAGCCTGCAGTAGCTCAGC 60.079 57.895 16.49 9.08 38.74 4.26
2301 2737 8.367911 TGCATCTCTATAACCTGGTAATTGTAG 58.632 37.037 0.00 0.00 0.00 2.74
2351 2787 8.722622 TCTCAAAGTAGAAGGGTATATAAGGG 57.277 38.462 0.00 0.00 0.00 3.95
2364 2802 9.998106 ACAGCTTATTAGTTTCTCAAAGTAGAA 57.002 29.630 0.00 0.00 33.69 2.10
2391 2829 5.772825 TGCTTGCAATCTGTAAGTTTCTT 57.227 34.783 0.00 0.00 41.28 2.52
2424 2862 6.073548 CCTCAAATCTCCGAATAATTTCCTCG 60.074 42.308 0.00 0.00 0.00 4.63
2509 2947 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
2510 2948 4.930696 GGGGTCATCCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 35.33 1.52
2511 2949 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
2524 2962 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
2530 2968 3.944250 AACATTGCAGAGGCCGGGG 62.944 63.158 2.18 0.00 40.13 5.73
2531 2969 1.535204 AAAACATTGCAGAGGCCGGG 61.535 55.000 2.18 0.00 40.13 5.73
2532 2970 0.388907 CAAAACATTGCAGAGGCCGG 60.389 55.000 0.00 0.00 40.13 6.13
2533 2971 1.010419 GCAAAACATTGCAGAGGCCG 61.010 55.000 8.56 0.00 46.60 6.13
2534 2972 2.831597 GCAAAACATTGCAGAGGCC 58.168 52.632 8.56 0.00 46.60 5.19
2541 2979 4.083377 CCAACCAAATAGGCAAAACATTGC 60.083 41.667 5.01 5.01 46.64 3.56
2542 2980 4.455190 CCCAACCAAATAGGCAAAACATTG 59.545 41.667 0.00 0.00 43.14 2.82
2543 2981 4.103943 ACCCAACCAAATAGGCAAAACATT 59.896 37.500 0.00 0.00 43.14 2.71
2552 2990 8.739972 GCTTATTATATGACCCAACCAAATAGG 58.260 37.037 0.00 0.00 45.67 2.57
2592 3030 1.202698 GCGCTCCTCCATCACCTATTT 60.203 52.381 0.00 0.00 0.00 1.40
2612 3077 5.363101 TCCTTCCTCATCATCTTGATTTCG 58.637 41.667 0.00 0.00 34.28 3.46
2684 3149 5.948758 TGTATGTGATAATTGCCTTTGTGGA 59.051 36.000 0.00 0.00 38.35 4.02
2774 3239 4.282496 AGATCGAGTGACCCACTTCTTAT 58.718 43.478 0.82 0.00 45.44 1.73
2919 3395 1.115326 AAGGGTTGTTGGCTCCAAGC 61.115 55.000 0.83 9.42 41.46 4.01
2920 3396 0.675633 CAAGGGTTGTTGGCTCCAAG 59.324 55.000 0.83 0.00 36.52 3.61
2921 3397 1.398958 GCAAGGGTTGTTGGCTCCAA 61.399 55.000 0.00 0.00 0.00 3.53
2922 3398 1.832167 GCAAGGGTTGTTGGCTCCA 60.832 57.895 0.00 0.00 0.00 3.86
2923 3399 1.187567 ATGCAAGGGTTGTTGGCTCC 61.188 55.000 0.00 0.00 0.00 4.70
2945 3421 8.988934 TCAAATTAAAGCTAGCCGATTACATAG 58.011 33.333 12.13 0.76 0.00 2.23
2947 3423 7.801716 TCAAATTAAAGCTAGCCGATTACAT 57.198 32.000 12.13 3.54 0.00 2.29
2948 3424 7.801716 ATCAAATTAAAGCTAGCCGATTACA 57.198 32.000 12.13 1.52 0.00 2.41
2949 3425 9.516314 AAAATCAAATTAAAGCTAGCCGATTAC 57.484 29.630 12.13 0.00 0.00 1.89
2982 3469 6.886459 CCCCACTTTGTGTACTACTACTAGTA 59.114 42.308 1.89 1.89 34.79 1.82
2983 3470 5.713861 CCCCACTTTGTGTACTACTACTAGT 59.286 44.000 0.00 0.00 37.04 2.57
2984 3471 5.948162 TCCCCACTTTGTGTACTACTACTAG 59.052 44.000 0.00 0.00 0.00 2.57
3008 3497 5.130292 TCGCTAACTGCTTGTTAACTAGT 57.870 39.130 16.66 8.66 40.24 2.57
3059 3559 1.077212 CGGAGGAACGGAGGGAGTA 60.077 63.158 0.00 0.00 0.00 2.59
3060 3560 2.362632 CGGAGGAACGGAGGGAGT 60.363 66.667 0.00 0.00 0.00 3.85
3061 3561 1.946475 GAACGGAGGAACGGAGGGAG 61.946 65.000 0.00 0.00 38.39 4.30
3062 3562 1.980772 GAACGGAGGAACGGAGGGA 60.981 63.158 0.00 0.00 38.39 4.20
3063 3563 2.577593 GAACGGAGGAACGGAGGG 59.422 66.667 0.00 0.00 38.39 4.30
3064 3564 2.181021 CGAACGGAGGAACGGAGG 59.819 66.667 0.00 0.00 38.39 4.30
3065 3565 1.443872 CACGAACGGAGGAACGGAG 60.444 63.158 0.00 0.00 38.39 4.63
3066 3566 1.454572 TTCACGAACGGAGGAACGGA 61.455 55.000 0.00 0.00 38.39 4.69
3067 3567 0.389426 ATTCACGAACGGAGGAACGG 60.389 55.000 0.00 0.00 38.39 4.44
3068 3568 2.267188 TATTCACGAACGGAGGAACG 57.733 50.000 0.00 0.00 40.31 3.95
3069 3569 3.367025 CACTTATTCACGAACGGAGGAAC 59.633 47.826 0.00 0.00 0.00 3.62
3070 3570 3.006110 ACACTTATTCACGAACGGAGGAA 59.994 43.478 0.00 0.65 0.00 3.36
3071 3571 2.559668 ACACTTATTCACGAACGGAGGA 59.440 45.455 0.00 0.00 0.00 3.71
3072 3572 2.955614 ACACTTATTCACGAACGGAGG 58.044 47.619 0.00 0.00 0.00 4.30
3073 3573 4.478699 TGTACACTTATTCACGAACGGAG 58.521 43.478 0.00 0.00 0.00 4.63
3074 3574 4.502171 TGTACACTTATTCACGAACGGA 57.498 40.909 0.00 0.00 0.00 4.69
3075 3575 5.100259 AGATGTACACTTATTCACGAACGG 58.900 41.667 0.00 0.00 0.00 4.44
3076 3576 6.965500 ACTAGATGTACACTTATTCACGAACG 59.035 38.462 0.00 0.00 0.00 3.95
3077 3577 8.684973 AACTAGATGTACACTTATTCACGAAC 57.315 34.615 0.00 0.00 0.00 3.95
3078 3578 9.701098 AAAACTAGATGTACACTTATTCACGAA 57.299 29.630 0.00 0.00 0.00 3.85
3079 3579 9.701098 AAAAACTAGATGTACACTTATTCACGA 57.299 29.630 0.00 0.00 0.00 4.35
3080 3580 9.741168 CAAAAACTAGATGTACACTTATTCACG 57.259 33.333 0.00 0.00 0.00 4.35
3085 3585 9.787435 TGGAACAAAAACTAGATGTACACTTAT 57.213 29.630 0.00 0.00 31.92 1.73
3151 3651 9.905713 ACCAATTTGATGTCATATGTTACTACT 57.094 29.630 1.90 0.00 0.00 2.57
3181 3681 9.834628 GATCCGTTTTGAAATGTACTTTGATAA 57.165 29.630 0.00 0.00 0.00 1.75
3182 3682 9.226606 AGATCCGTTTTGAAATGTACTTTGATA 57.773 29.630 0.00 0.00 0.00 2.15
3183 3683 8.110860 AGATCCGTTTTGAAATGTACTTTGAT 57.889 30.769 0.00 0.00 0.00 2.57
3184 3684 7.504924 AGATCCGTTTTGAAATGTACTTTGA 57.495 32.000 0.00 0.00 0.00 2.69
3185 3685 8.504005 ACTAGATCCGTTTTGAAATGTACTTTG 58.496 33.333 0.00 0.00 0.00 2.77
3186 3686 8.504005 CACTAGATCCGTTTTGAAATGTACTTT 58.496 33.333 0.00 0.00 0.00 2.66
3187 3687 7.876068 TCACTAGATCCGTTTTGAAATGTACTT 59.124 33.333 0.00 0.00 0.00 2.24
3188 3688 7.383687 TCACTAGATCCGTTTTGAAATGTACT 58.616 34.615 0.00 0.00 0.00 2.73
3189 3689 7.591006 TCACTAGATCCGTTTTGAAATGTAC 57.409 36.000 0.00 0.00 0.00 2.90
3190 3690 9.309516 GTATCACTAGATCCGTTTTGAAATGTA 57.690 33.333 0.00 0.00 35.67 2.29
3191 3691 8.041323 AGTATCACTAGATCCGTTTTGAAATGT 58.959 33.333 0.00 0.00 35.67 2.71
3192 3692 8.425577 AGTATCACTAGATCCGTTTTGAAATG 57.574 34.615 0.00 0.00 35.67 2.32
3201 3701 9.352191 ACAGTAAATTAGTATCACTAGATCCGT 57.648 33.333 0.00 0.00 35.67 4.69
3202 3702 9.828852 GACAGTAAATTAGTATCACTAGATCCG 57.171 37.037 0.00 0.00 35.67 4.18
3203 3703 9.828852 CGACAGTAAATTAGTATCACTAGATCC 57.171 37.037 0.00 0.00 35.67 3.36
3234 3734 8.621286 CCAACTTTCTAGAGAAAAGTAAAAGCA 58.379 33.333 8.39 0.00 42.72 3.91
3235 3735 8.622157 ACCAACTTTCTAGAGAAAAGTAAAAGC 58.378 33.333 8.39 0.00 42.72 3.51
3237 3737 9.675464 TGACCAACTTTCTAGAGAAAAGTAAAA 57.325 29.630 8.39 0.00 42.72 1.52
3238 3738 9.675464 TTGACCAACTTTCTAGAGAAAAGTAAA 57.325 29.630 8.39 0.04 42.72 2.01
3239 3739 9.675464 TTTGACCAACTTTCTAGAGAAAAGTAA 57.325 29.630 8.39 0.00 42.72 2.24
3240 3740 9.326413 CTTTGACCAACTTTCTAGAGAAAAGTA 57.674 33.333 8.39 0.00 42.72 2.24
3241 3741 7.829706 ACTTTGACCAACTTTCTAGAGAAAAGT 59.170 33.333 6.20 2.97 42.72 2.66
3242 3742 8.214721 ACTTTGACCAACTTTCTAGAGAAAAG 57.785 34.615 6.20 1.80 42.72 2.27
3243 3743 8.575649 AACTTTGACCAACTTTCTAGAGAAAA 57.424 30.769 6.20 0.00 42.72 2.29
3244 3744 8.575649 AAACTTTGACCAACTTTCTAGAGAAA 57.424 30.769 4.70 4.70 41.29 2.52
3245 3745 8.575649 AAAACTTTGACCAACTTTCTAGAGAA 57.424 30.769 0.00 0.00 0.00 2.87
3246 3746 9.675464 TTAAAACTTTGACCAACTTTCTAGAGA 57.325 29.630 0.00 0.00 0.00 3.10
3288 3788 9.779237 CGCGAATAAGTATACATCTAACTTTTG 57.221 33.333 0.00 0.00 35.23 2.44
3289 3789 8.975439 CCGCGAATAAGTATACATCTAACTTTT 58.025 33.333 8.23 0.00 35.23 2.27
3290 3790 8.355169 TCCGCGAATAAGTATACATCTAACTTT 58.645 33.333 8.23 0.00 35.23 2.66
3291 3791 7.806960 GTCCGCGAATAAGTATACATCTAACTT 59.193 37.037 8.23 0.00 37.27 2.66
3292 3792 7.303998 GTCCGCGAATAAGTATACATCTAACT 58.696 38.462 8.23 0.00 0.00 2.24
3293 3793 6.248001 CGTCCGCGAATAAGTATACATCTAAC 59.752 42.308 8.23 0.00 41.33 2.34
3294 3794 6.309436 CGTCCGCGAATAAGTATACATCTAA 58.691 40.000 8.23 0.00 41.33 2.10
3295 3795 5.163824 CCGTCCGCGAATAAGTATACATCTA 60.164 44.000 8.23 0.00 41.33 1.98
3296 3796 4.379186 CCGTCCGCGAATAAGTATACATCT 60.379 45.833 8.23 0.00 41.33 2.90
3297 3797 3.850273 CCGTCCGCGAATAAGTATACATC 59.150 47.826 8.23 0.00 41.33 3.06
3298 3798 3.503363 TCCGTCCGCGAATAAGTATACAT 59.497 43.478 8.23 0.00 41.33 2.29
3299 3799 2.877786 TCCGTCCGCGAATAAGTATACA 59.122 45.455 8.23 0.00 41.33 2.29
3300 3800 3.486584 CTCCGTCCGCGAATAAGTATAC 58.513 50.000 8.23 0.00 41.33 1.47
3301 3801 2.485426 CCTCCGTCCGCGAATAAGTATA 59.515 50.000 8.23 0.00 41.33 1.47
3302 3802 1.268899 CCTCCGTCCGCGAATAAGTAT 59.731 52.381 8.23 0.00 41.33 2.12
3303 3803 0.664761 CCTCCGTCCGCGAATAAGTA 59.335 55.000 8.23 0.00 41.33 2.24
3304 3804 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
3305 3805 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
3306 3806 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
3307 3807 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
3308 3808 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
3309 3809 2.898920 ATACTCCCTCCGTCCGCGAA 62.899 60.000 8.23 0.00 41.33 4.70
3310 3810 2.043604 TATACTCCCTCCGTCCGCGA 62.044 60.000 8.23 0.00 41.33 5.87
3311 3811 0.959372 ATATACTCCCTCCGTCCGCG 60.959 60.000 0.00 0.00 37.95 6.46
3312 3812 1.201880 GAATATACTCCCTCCGTCCGC 59.798 57.143 0.00 0.00 0.00 5.54
3313 3813 2.511659 TGAATATACTCCCTCCGTCCG 58.488 52.381 0.00 0.00 0.00 4.79
3314 3814 3.258622 CCTTGAATATACTCCCTCCGTCC 59.741 52.174 0.00 0.00 0.00 4.79
3315 3815 4.150359 TCCTTGAATATACTCCCTCCGTC 58.850 47.826 0.00 0.00 0.00 4.79
3316 3816 4.194678 TCCTTGAATATACTCCCTCCGT 57.805 45.455 0.00 0.00 0.00 4.69
3317 3817 4.344102 TGTTCCTTGAATATACTCCCTCCG 59.656 45.833 0.00 0.00 0.00 4.63
3318 3818 5.888982 TGTTCCTTGAATATACTCCCTCC 57.111 43.478 0.00 0.00 0.00 4.30
3319 3819 7.565680 TCTTTGTTCCTTGAATATACTCCCTC 58.434 38.462 0.00 0.00 0.00 4.30
3320 3820 7.510675 TCTTTGTTCCTTGAATATACTCCCT 57.489 36.000 0.00 0.00 0.00 4.20
3321 3821 7.229506 CCATCTTTGTTCCTTGAATATACTCCC 59.770 40.741 0.00 0.00 0.00 4.30
3322 3822 7.993183 TCCATCTTTGTTCCTTGAATATACTCC 59.007 37.037 0.00 0.00 0.00 3.85
3323 3823 8.831550 GTCCATCTTTGTTCCTTGAATATACTC 58.168 37.037 0.00 0.00 0.00 2.59
3324 3824 8.328758 TGTCCATCTTTGTTCCTTGAATATACT 58.671 33.333 0.00 0.00 0.00 2.12
3325 3825 8.506168 TGTCCATCTTTGTTCCTTGAATATAC 57.494 34.615 0.00 0.00 0.00 1.47
3351 3851 7.062605 GTCACAATTTCATTCAATCACCATGTC 59.937 37.037 0.00 0.00 0.00 3.06
3533 4040 2.642139 TCACGTACGGTCCATCTTTC 57.358 50.000 21.06 0.00 0.00 2.62
3534 4041 2.353406 CCTTCACGTACGGTCCATCTTT 60.353 50.000 21.06 0.00 0.00 2.52
3535 4042 1.203994 CCTTCACGTACGGTCCATCTT 59.796 52.381 21.06 0.00 0.00 2.40
3536 4043 0.815734 CCTTCACGTACGGTCCATCT 59.184 55.000 21.06 0.00 0.00 2.90
3540 4047 0.108945 CTTCCCTTCACGTACGGTCC 60.109 60.000 21.06 0.00 0.00 4.46
3654 4161 4.567558 CGGTTGAATATTGGCACTACGTAA 59.432 41.667 0.00 0.00 0.00 3.18
3813 4321 1.966354 CATCCTGATGACCCATCGAGA 59.034 52.381 0.70 0.00 43.14 4.04
3922 4434 0.315869 AGCAAAGCAAAACGACGACG 60.316 50.000 5.58 5.58 45.75 5.12
4026 4545 2.857489 GCGACCTGGACGTGTATATGTC 60.857 54.545 18.88 3.34 41.22 3.06
4031 4550 0.606604 AAAGCGACCTGGACGTGTAT 59.393 50.000 18.88 2.13 0.00 2.29
4037 4556 2.027625 CCGTGAAAGCGACCTGGAC 61.028 63.158 0.00 0.00 0.00 4.02
4049 4568 4.351874 AGAGTTGAATTTCCTCCGTGAA 57.648 40.909 0.00 0.00 0.00 3.18
4089 4608 5.633830 TTCAGATCCAAATGACTGCTTTC 57.366 39.130 0.00 0.00 0.00 2.62
4163 4682 0.657840 GCCCACTTCGATCCAATTCG 59.342 55.000 0.00 0.00 40.46 3.34
4199 4718 7.477422 CGAAATACAATATGGTGCTATAAACGC 59.523 37.037 0.00 0.00 0.00 4.84
4377 5160 5.182950 TGCATCCGGGCATTATTATTAGTTG 59.817 40.000 0.00 0.00 39.25 3.16
4453 5242 2.176546 GATGTGCGTGCATGCGTT 59.823 55.556 25.05 12.63 37.81 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.