Multiple sequence alignment - TraesCS5D01G183700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G183700 chr5D 100.000 7530 0 0 1 7530 285455562 285463091 0.000000e+00 13906.0
1 TraesCS5D01G183700 chr5D 100.000 84 0 0 1802 1885 285457243 285457326 1.010000e-33 156.0
2 TraesCS5D01G183700 chr5D 100.000 84 0 0 1682 1765 285457363 285457446 1.010000e-33 156.0
3 TraesCS5D01G183700 chr5D 100.000 37 0 0 1766 1802 503291109 503291145 1.360000e-07 69.4
4 TraesCS5D01G183700 chr5D 100.000 37 0 0 1766 1802 512409424 512409460 1.360000e-07 69.4
5 TraesCS5D01G183700 chr5D 100.000 37 0 0 1766 1802 512416361 512416397 1.360000e-07 69.4
6 TraesCS5D01G183700 chr4A 96.554 4440 130 18 1802 6237 96433099 96428679 0.000000e+00 7330.0
7 TraesCS5D01G183700 chr4A 95.031 4448 174 24 1802 6237 96487891 96483479 0.000000e+00 6946.0
8 TraesCS5D01G183700 chr4A 91.766 1421 56 28 396 1765 96434426 96433016 0.000000e+00 1919.0
9 TraesCS5D01G183700 chr4A 96.173 784 29 1 6237 7020 96483427 96482645 0.000000e+00 1280.0
10 TraesCS5D01G183700 chr4A 95.336 729 32 2 6252 6980 96428628 96427902 0.000000e+00 1157.0
11 TraesCS5D01G183700 chr4A 92.164 587 31 5 464 1035 96519405 96518819 0.000000e+00 815.0
12 TraesCS5D01G183700 chr4A 96.368 468 15 2 1 468 96520105 96519640 0.000000e+00 769.0
13 TraesCS5D01G183700 chr4A 93.750 432 24 3 1 431 96434855 96434426 0.000000e+00 645.0
14 TraesCS5D01G183700 chr4A 93.706 429 19 5 1033 1455 96495224 96494798 2.960000e-178 636.0
15 TraesCS5D01G183700 chr4A 87.031 293 8 12 1473 1765 96488070 96487808 3.410000e-78 303.0
16 TraesCS5D01G183700 chr3B 95.944 4462 124 21 1802 6237 784490081 784485651 0.000000e+00 7184.0
17 TraesCS5D01G183700 chr3B 95.785 4460 134 19 1802 6237 784556301 784551872 0.000000e+00 7145.0
18 TraesCS5D01G183700 chr3B 94.412 1378 47 11 1 1366 784557970 784556611 0.000000e+00 2091.0
19 TraesCS5D01G183700 chr3B 94.199 1379 50 11 1 1366 784491756 784490395 0.000000e+00 2076.0
20 TraesCS5D01G183700 chr3B 96.368 468 17 0 6237 6704 784485600 784485133 0.000000e+00 771.0
21 TraesCS5D01G183700 chr3B 96.368 468 17 0 6237 6704 784551821 784551354 0.000000e+00 771.0
22 TraesCS5D01G183700 chr3B 86.750 400 13 15 1404 1765 784556615 784556218 7.030000e-110 409.0
23 TraesCS5D01G183700 chr3B 86.139 404 12 18 1404 1765 784490399 784489998 5.480000e-106 396.0
24 TraesCS5D01G183700 chr4B 86.248 589 76 4 6946 7530 12995526 12994939 1.070000e-177 634.0
25 TraesCS5D01G183700 chr4B 86.003 593 75 6 6942 7530 545334481 545333893 4.960000e-176 628.0
26 TraesCS5D01G183700 chr1B 86.149 592 73 5 6939 7530 680689075 680689657 1.380000e-176 630.0
27 TraesCS5D01G183700 chrUn 86.003 593 75 6 6942 7530 190053248 190052660 4.960000e-176 628.0
28 TraesCS5D01G183700 chrUn 86.003 593 75 6 6942 7530 198843882 198843294 4.960000e-176 628.0
29 TraesCS5D01G183700 chrUn 86.177 586 73 4 6945 7530 9020664 9020087 1.780000e-175 627.0
30 TraesCS5D01G183700 chrUn 85.980 592 75 4 6939 7530 198590610 198591193 1.780000e-175 627.0
31 TraesCS5D01G183700 chrUn 86.177 586 73 4 6945 7530 268526774 268526197 1.780000e-175 627.0
32 TraesCS5D01G183700 chrUn 100.000 37 0 0 1766 1802 39512738 39512774 1.360000e-07 69.4
33 TraesCS5D01G183700 chr6B 85.980 592 77 6 6942 7530 719600332 719599744 4.960000e-176 628.0
34 TraesCS5D01G183700 chr6D 100.000 37 0 0 1766 1802 145357284 145357320 1.360000e-07 69.4
35 TraesCS5D01G183700 chr3D 100.000 37 0 0 1766 1802 235618631 235618667 1.360000e-07 69.4
36 TraesCS5D01G183700 chr2D 100.000 37 0 0 1766 1802 9789199 9789163 1.360000e-07 69.4
37 TraesCS5D01G183700 chr1D 100.000 37 0 0 1766 1802 68411235 68411271 1.360000e-07 69.4
38 TraesCS5D01G183700 chr1A 100.000 37 0 0 1766 1802 554462811 554462847 1.360000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G183700 chr5D 285455562 285463091 7529 False 13906.00 13906 100.00000 1 7530 1 chr5D.!!$F1 7529
1 TraesCS5D01G183700 chr4A 96482645 96488070 5425 True 2843.00 6946 92.74500 1473 7020 3 chr4A.!!$R3 5547
2 TraesCS5D01G183700 chr4A 96427902 96434855 6953 True 2762.75 7330 94.35150 1 6980 4 chr4A.!!$R2 6979
3 TraesCS5D01G183700 chr4A 96518819 96520105 1286 True 792.00 815 94.26600 1 1035 2 chr4A.!!$R4 1034
4 TraesCS5D01G183700 chr3B 784485133 784491756 6623 True 2606.75 7184 93.16250 1 6704 4 chr3B.!!$R1 6703
5 TraesCS5D01G183700 chr3B 784551354 784557970 6616 True 2604.00 7145 93.32875 1 6704 4 chr3B.!!$R2 6703
6 TraesCS5D01G183700 chr4B 12994939 12995526 587 True 634.00 634 86.24800 6946 7530 1 chr4B.!!$R1 584
7 TraesCS5D01G183700 chr4B 545333893 545334481 588 True 628.00 628 86.00300 6942 7530 1 chr4B.!!$R2 588
8 TraesCS5D01G183700 chr1B 680689075 680689657 582 False 630.00 630 86.14900 6939 7530 1 chr1B.!!$F1 591
9 TraesCS5D01G183700 chrUn 190052660 190053248 588 True 628.00 628 86.00300 6942 7530 1 chrUn.!!$R2 588
10 TraesCS5D01G183700 chrUn 198843294 198843882 588 True 628.00 628 86.00300 6942 7530 1 chrUn.!!$R3 588
11 TraesCS5D01G183700 chrUn 9020087 9020664 577 True 627.00 627 86.17700 6945 7530 1 chrUn.!!$R1 585
12 TraesCS5D01G183700 chrUn 198590610 198591193 583 False 627.00 627 85.98000 6939 7530 1 chrUn.!!$F2 591
13 TraesCS5D01G183700 chrUn 268526197 268526774 577 True 627.00 627 86.17700 6945 7530 1 chrUn.!!$R4 585
14 TraesCS5D01G183700 chr6B 719599744 719600332 588 True 628.00 628 85.98000 6942 7530 1 chr6B.!!$R1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 347 0.162933 CACGGAAACCAACGACGATG 59.837 55.000 0.00 0.0 0.00 3.84 F
529 807 3.460103 AGATTGCAAACTTTGGTTGCAG 58.540 40.909 19.92 0.0 39.05 4.41 F
1898 2265 0.029834 GGCCATTAGAAGCACGCATG 59.970 55.000 0.00 0.0 0.00 4.06 F
3410 3807 0.804989 CGGGTCAGTTTTGGATCTGC 59.195 55.000 0.00 0.0 0.00 4.26 F
3470 3867 1.326548 GAAAATGTCGGGTCGGATTCG 59.673 52.381 0.00 0.0 37.82 3.34 F
3699 4101 2.031919 CCGCACAGCTTGGTGGTA 59.968 61.111 6.35 0.0 39.19 3.25 F
4154 4556 2.092429 TGTTCTTGACTTCTTGCCACCT 60.092 45.455 0.00 0.0 0.00 4.00 F
4261 4663 4.934797 ATCTCAGGAAGAACATCCCAAA 57.065 40.909 0.00 0.0 40.59 3.28 F
5906 6314 4.464597 ACAATGAGTTCAGGAGGAGACTAC 59.535 45.833 0.00 0.0 44.43 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1465 1790 0.442310 ATTGATACACACACACGCGC 59.558 50.000 5.73 0.00 0.00 6.86 R
2223 2590 0.921896 ACCAGCCTCTGCATTATGGT 59.078 50.000 4.03 4.03 37.46 3.55 R
3469 3866 0.375454 AATCTGCTCGACTCGACTCG 59.625 55.000 8.00 8.00 34.83 4.18 R
4691 5094 8.856153 TTAAGGAATGCATTCTGTAAACACTA 57.144 30.769 32.48 12.03 37.00 2.74 R
5090 5496 9.953565 TCAGTTATACTAAAAATGTGCTAACCT 57.046 29.630 0.00 0.00 0.00 3.50 R
5642 6049 6.092259 GTGGTGCTAAGGTTACAAGATACAAG 59.908 42.308 0.00 0.00 0.00 3.16 R
5846 6254 3.816523 CTCTCCCTGTCTCGGTATACTTC 59.183 52.174 2.25 0.00 0.00 3.01 R
6207 6617 8.271458 ACTTTGGTTTGGGTAAATTTTGAATCT 58.729 29.630 0.00 0.00 0.00 2.40 R
7047 7509 0.506932 AATTGCGAGTGTTGACGACG 59.493 50.000 0.00 0.00 0.00 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.490663 CTGTTTAATGTTCTTAATTAAGCTCGG 57.509 33.333 18.68 0.00 34.00 4.63
37 38 6.751514 TCTTAATTAAGCTCGGCAAATTGA 57.248 33.333 18.68 0.00 31.98 2.57
345 347 0.162933 CACGGAAACCAACGACGATG 59.837 55.000 0.00 0.00 0.00 3.84
385 387 4.439289 GGGAGTACAACGGTATCACTGTAC 60.439 50.000 10.59 10.59 42.83 2.90
437 473 5.279206 GCAGCTACACCTACACATCATATCT 60.279 44.000 0.00 0.00 0.00 1.98
523 801 5.050837 GCTGTGTTTAGATTGCAAACTTTGG 60.051 40.000 14.90 1.00 36.92 3.28
529 807 3.460103 AGATTGCAAACTTTGGTTGCAG 58.540 40.909 19.92 0.00 39.05 4.41
541 819 3.552132 TGGTTGCAGAGTTCACTGTAA 57.448 42.857 0.00 0.00 39.39 2.41
552 830 4.510571 AGTTCACTGTAACACTTTTCGGT 58.489 39.130 0.00 0.00 0.00 4.69
641 919 5.044558 CGAGACCTTTCTATCAAGCCTAAC 58.955 45.833 0.00 0.00 29.47 2.34
786 1081 6.884836 ACTCCTAATTAGTGTCCAAACATTCC 59.115 38.462 11.50 0.00 37.81 3.01
800 1095 3.769739 ACATTCCAAGTCACTGTAGCA 57.230 42.857 0.00 0.00 0.00 3.49
919 1214 7.875327 ACACCTTACTGATTGTTGTAACTTT 57.125 32.000 0.00 0.00 0.00 2.66
1185 1510 7.171337 TGCATACAGCTGTTACATACATACATG 59.829 37.037 27.06 17.69 45.94 3.21
1463 1788 7.934222 ATTCGATCTTATATATATACGCGCG 57.066 36.000 30.96 30.96 0.00 6.86
1490 1828 5.550981 GCGTGTGTGTGTATCAATTCTAAG 58.449 41.667 0.00 0.00 0.00 2.18
1542 1880 4.799419 ATTGATGCCGCATTTTAATTGC 57.201 36.364 7.43 2.14 0.00 3.56
1549 1887 3.245990 GCCGCATTTTAATTGCTTGATCC 59.754 43.478 9.62 0.00 0.00 3.36
1550 1888 4.431809 CCGCATTTTAATTGCTTGATCCA 58.568 39.130 9.62 0.00 0.00 3.41
1740 2107 4.388485 CATGCATATGGTGGTAGCTAACA 58.612 43.478 7.58 7.58 0.00 2.41
1741 2108 4.495690 TGCATATGGTGGTAGCTAACAA 57.504 40.909 14.39 0.00 0.00 2.83
1742 2109 4.849518 TGCATATGGTGGTAGCTAACAAA 58.150 39.130 14.39 5.39 0.00 2.83
1743 2110 5.445069 TGCATATGGTGGTAGCTAACAAAT 58.555 37.500 14.39 12.78 0.00 2.32
1744 2111 5.530915 TGCATATGGTGGTAGCTAACAAATC 59.469 40.000 14.39 7.05 0.00 2.17
1745 2112 5.530915 GCATATGGTGGTAGCTAACAAATCA 59.469 40.000 14.39 12.60 0.00 2.57
1746 2113 6.207417 GCATATGGTGGTAGCTAACAAATCAT 59.793 38.462 14.39 18.24 0.00 2.45
1747 2114 7.587629 CATATGGTGGTAGCTAACAAATCATG 58.412 38.462 22.98 16.53 0.00 3.07
1748 2115 4.917385 TGGTGGTAGCTAACAAATCATGT 58.083 39.130 14.39 0.00 46.82 3.21
1763 2130 8.020777 ACAAATCATGTTCATAAATATGGCCA 57.979 30.769 8.56 8.56 40.06 5.36
1764 2131 8.653191 ACAAATCATGTTCATAAATATGGCCAT 58.347 29.630 24.45 24.45 40.06 4.40
1765 2132 8.931775 CAAATCATGTTCATAAATATGGCCATG 58.068 33.333 29.04 12.22 40.05 3.66
1766 2133 7.786046 ATCATGTTCATAAATATGGCCATGT 57.214 32.000 29.04 19.88 39.87 3.21
1767 2134 7.600231 TCATGTTCATAAATATGGCCATGTT 57.400 32.000 29.04 24.87 39.87 2.71
1768 2135 7.435305 TCATGTTCATAAATATGGCCATGTTG 58.565 34.615 29.04 16.58 39.87 3.33
1769 2136 6.159299 TGTTCATAAATATGGCCATGTTGG 57.841 37.500 29.04 19.22 34.98 3.77
1770 2137 5.070180 TGTTCATAAATATGGCCATGTTGGG 59.930 40.000 29.04 18.89 33.55 4.12
1771 2138 4.813809 TCATAAATATGGCCATGTTGGGT 58.186 39.130 29.04 15.05 33.55 4.51
1772 2139 5.215069 TCATAAATATGGCCATGTTGGGTT 58.785 37.500 29.04 14.70 33.55 4.11
1773 2140 5.664908 TCATAAATATGGCCATGTTGGGTTT 59.335 36.000 29.04 18.52 33.55 3.27
1774 2141 4.925390 AAATATGGCCATGTTGGGTTTT 57.075 36.364 29.04 8.73 38.19 2.43
1775 2142 7.345653 TCATAAATATGGCCATGTTGGGTTTTA 59.654 33.333 29.04 15.32 33.55 1.52
1776 2143 6.573712 AAATATGGCCATGTTGGGTTTTAT 57.426 33.333 29.04 7.21 38.19 1.40
1777 2144 6.573712 AATATGGCCATGTTGGGTTTTATT 57.426 33.333 29.04 12.47 38.19 1.40
1778 2145 4.925390 ATGGCCATGTTGGGTTTTATTT 57.075 36.364 20.04 0.00 38.19 1.40
1779 2146 4.013267 TGGCCATGTTGGGTTTTATTTG 57.987 40.909 0.00 0.00 38.19 2.32
1780 2147 3.392616 TGGCCATGTTGGGTTTTATTTGT 59.607 39.130 0.00 0.00 38.19 2.83
1781 2148 3.750652 GGCCATGTTGGGTTTTATTTGTG 59.249 43.478 0.00 0.00 38.19 3.33
1782 2149 4.384940 GCCATGTTGGGTTTTATTTGTGT 58.615 39.130 0.00 0.00 38.19 3.72
1783 2150 5.511545 GGCCATGTTGGGTTTTATTTGTGTA 60.512 40.000 0.00 0.00 38.19 2.90
1784 2151 6.169800 GCCATGTTGGGTTTTATTTGTGTAT 58.830 36.000 0.00 0.00 38.19 2.29
1785 2152 6.652900 GCCATGTTGGGTTTTATTTGTGTATT 59.347 34.615 0.00 0.00 38.19 1.89
1786 2153 7.174080 GCCATGTTGGGTTTTATTTGTGTATTT 59.826 33.333 0.00 0.00 38.19 1.40
1787 2154 8.502387 CCATGTTGGGTTTTATTTGTGTATTTG 58.498 33.333 0.00 0.00 32.67 2.32
1788 2155 8.502387 CATGTTGGGTTTTATTTGTGTATTTGG 58.498 33.333 0.00 0.00 0.00 3.28
1789 2156 6.483640 TGTTGGGTTTTATTTGTGTATTTGGC 59.516 34.615 0.00 0.00 0.00 4.52
1790 2157 5.230942 TGGGTTTTATTTGTGTATTTGGCG 58.769 37.500 0.00 0.00 0.00 5.69
1791 2158 4.627900 GGGTTTTATTTGTGTATTTGGCGG 59.372 41.667 0.00 0.00 0.00 6.13
1792 2159 5.471257 GGTTTTATTTGTGTATTTGGCGGA 58.529 37.500 0.00 0.00 0.00 5.54
1793 2160 5.927115 GGTTTTATTTGTGTATTTGGCGGAA 59.073 36.000 0.00 0.00 0.00 4.30
1794 2161 6.592220 GGTTTTATTTGTGTATTTGGCGGAAT 59.408 34.615 0.00 0.00 0.00 3.01
1795 2162 7.118535 GGTTTTATTTGTGTATTTGGCGGAATT 59.881 33.333 0.00 0.00 0.00 2.17
1796 2163 8.499967 GTTTTATTTGTGTATTTGGCGGAATTT 58.500 29.630 0.00 0.00 0.00 1.82
1797 2164 7.588143 TTATTTGTGTATTTGGCGGAATTTG 57.412 32.000 0.00 0.00 0.00 2.32
1798 2165 3.584406 TGTGTATTTGGCGGAATTTGG 57.416 42.857 0.00 0.00 0.00 3.28
1799 2166 2.267426 GTGTATTTGGCGGAATTTGGC 58.733 47.619 0.00 0.00 0.00 4.52
1800 2167 1.895798 TGTATTTGGCGGAATTTGGCA 59.104 42.857 4.12 4.12 40.47 4.92
1801 2168 2.499289 TGTATTTGGCGGAATTTGGCAT 59.501 40.909 8.38 0.00 41.88 4.40
1802 2169 2.785540 ATTTGGCGGAATTTGGCATT 57.214 40.000 8.38 0.00 41.88 3.56
1803 2170 2.091852 TTTGGCGGAATTTGGCATTC 57.908 45.000 8.38 0.00 41.88 2.67
1804 2171 0.972134 TTGGCGGAATTTGGCATTCA 59.028 45.000 8.38 0.00 41.88 2.57
1805 2172 0.972134 TGGCGGAATTTGGCATTCAA 59.028 45.000 3.48 0.00 36.93 2.69
1816 2183 5.402997 TTTGGCATTCAAATGAGTATGCA 57.597 34.783 17.31 0.00 43.89 3.96
1817 2184 5.601583 TTGGCATTCAAATGAGTATGCAT 57.398 34.783 17.31 3.79 43.89 3.96
1818 2185 4.939271 TGGCATTCAAATGAGTATGCATG 58.061 39.130 10.16 4.84 43.89 4.06
1819 2186 3.739300 GGCATTCAAATGAGTATGCATGC 59.261 43.478 11.82 11.82 43.89 4.06
1820 2187 3.739300 GCATTCAAATGAGTATGCATGCC 59.261 43.478 16.68 0.00 42.18 4.40
1821 2188 4.738243 GCATTCAAATGAGTATGCATGCCA 60.738 41.667 16.68 8.85 42.18 4.92
1822 2189 5.353111 CATTCAAATGAGTATGCATGCCAA 58.647 37.500 16.68 0.00 38.70 4.52
1823 2190 5.601583 TTCAAATGAGTATGCATGCCAAT 57.398 34.783 16.68 5.40 0.00 3.16
1824 2191 6.712179 TTCAAATGAGTATGCATGCCAATA 57.288 33.333 16.68 4.28 0.00 1.90
1825 2192 6.904463 TCAAATGAGTATGCATGCCAATAT 57.096 33.333 16.68 4.18 0.00 1.28
1826 2193 6.683715 TCAAATGAGTATGCATGCCAATATG 58.316 36.000 16.68 5.38 0.00 1.78
1827 2194 6.265876 TCAAATGAGTATGCATGCCAATATGT 59.734 34.615 16.68 0.00 0.00 2.29
1828 2195 7.447853 TCAAATGAGTATGCATGCCAATATGTA 59.552 33.333 16.68 0.00 0.00 2.29
1829 2196 7.949690 AATGAGTATGCATGCCAATATGTAT 57.050 32.000 16.68 1.35 37.23 2.29
1830 2197 7.949690 ATGAGTATGCATGCCAATATGTATT 57.050 32.000 16.68 0.00 35.46 1.89
1831 2198 9.465199 AATGAGTATGCATGCCAATATGTATTA 57.535 29.630 16.68 0.00 35.46 0.98
1832 2199 9.636789 ATGAGTATGCATGCCAATATGTATTAT 57.363 29.630 16.68 0.00 35.46 1.28
1833 2200 9.465199 TGAGTATGCATGCCAATATGTATTATT 57.535 29.630 16.68 0.00 35.46 1.40
1838 2205 8.830201 TGCATGCCAATATGTATTATTTTTCC 57.170 30.769 16.68 0.00 0.00 3.13
1839 2206 8.427276 TGCATGCCAATATGTATTATTTTTCCA 58.573 29.630 16.68 0.00 0.00 3.53
1840 2207 9.439500 GCATGCCAATATGTATTATTTTTCCAT 57.561 29.630 6.36 0.00 0.00 3.41
1842 2209 8.830201 TGCCAATATGTATTATTTTTCCATGC 57.170 30.769 0.00 0.00 0.00 4.06
1843 2210 8.427276 TGCCAATATGTATTATTTTTCCATGCA 58.573 29.630 0.00 0.00 0.00 3.96
1844 2211 9.439500 GCCAATATGTATTATTTTTCCATGCAT 57.561 29.630 0.00 0.00 0.00 3.96
1898 2265 0.029834 GGCCATTAGAAGCACGCATG 59.970 55.000 0.00 0.00 0.00 4.06
1935 2302 3.937814 TCATGCTTGTGTACCACCTTAG 58.062 45.455 0.00 0.00 32.73 2.18
1944 2311 7.605309 GCTTGTGTACCACCTTAGTAACTATTT 59.395 37.037 0.00 0.00 32.73 1.40
2223 2590 1.346395 AGATGGCAAGTACAACGACCA 59.654 47.619 0.00 0.00 0.00 4.02
2233 2600 2.192664 ACAACGACCACCATAATGCA 57.807 45.000 0.00 0.00 0.00 3.96
2499 2872 4.417506 TCTGCTGATTTCAATTTGCATCG 58.582 39.130 0.00 0.00 0.00 3.84
2704 3077 9.271828 ACTCTTTTTGATGAAACTTTTTGTTGT 57.728 25.926 0.00 0.00 39.13 3.32
2726 3101 2.755836 TCGTTCTGCAAGCTTCAAAC 57.244 45.000 0.00 0.00 0.00 2.93
2830 3207 8.874816 TGTGCTTGTTAATTTAAAAACAGAACC 58.125 29.630 5.78 0.00 36.96 3.62
3002 3399 4.464244 CAGGAGAGAATACAAGGACACAGA 59.536 45.833 0.00 0.00 0.00 3.41
3102 3499 4.870123 ACAGGTGCATGCTTGATTTAAA 57.130 36.364 20.33 0.00 0.00 1.52
3307 3704 1.843832 TCGGGTTGGGTGATGGACA 60.844 57.895 0.00 0.00 0.00 4.02
3409 3806 2.472695 TCGGGTCAGTTTTGGATCTG 57.527 50.000 0.00 0.00 0.00 2.90
3410 3807 0.804989 CGGGTCAGTTTTGGATCTGC 59.195 55.000 0.00 0.00 0.00 4.26
3411 3808 1.611673 CGGGTCAGTTTTGGATCTGCT 60.612 52.381 0.00 0.00 0.00 4.24
3416 3813 2.106338 TCAGTTTTGGATCTGCTGGTCA 59.894 45.455 6.18 0.00 0.00 4.02
3469 3866 1.669265 GGAAAATGTCGGGTCGGATTC 59.331 52.381 0.00 0.00 0.00 2.52
3470 3867 1.326548 GAAAATGTCGGGTCGGATTCG 59.673 52.381 0.00 0.00 37.82 3.34
3699 4101 2.031919 CCGCACAGCTTGGTGGTA 59.968 61.111 6.35 0.00 39.19 3.25
3963 4365 2.704464 TCGGAGATGACGGTCTTCTA 57.296 50.000 22.07 8.28 31.94 2.10
4154 4556 2.092429 TGTTCTTGACTTCTTGCCACCT 60.092 45.455 0.00 0.00 0.00 4.00
4261 4663 4.934797 ATCTCAGGAAGAACATCCCAAA 57.065 40.909 0.00 0.00 40.59 3.28
4691 5094 9.495572 CCTTATTCTTTGACTGAAGAGTTTACT 57.504 33.333 0.00 0.00 37.01 2.24
5013 5419 5.220710 ACTCTGACACAAACAGCTAGATT 57.779 39.130 0.00 0.00 35.61 2.40
5090 5496 6.995686 TCTTGGTCACAATAAGTTTTCTGCTA 59.004 34.615 0.00 0.00 35.73 3.49
5221 5627 7.391148 TCAGCTATCAAAAATAGGGTTTGAC 57.609 36.000 1.94 0.00 45.19 3.18
5642 6049 9.664332 ATTCTCTTACCAAGACATATATCATGC 57.336 33.333 0.00 0.00 33.12 4.06
5761 6169 8.745837 CAATGTTAAGCAAAAACTGTACTCTTG 58.254 33.333 0.00 0.00 0.00 3.02
5906 6314 4.464597 ACAATGAGTTCAGGAGGAGACTAC 59.535 45.833 0.00 0.00 44.43 2.73
6196 6606 4.973168 ACAACTGAGAATGTGGCTTAAGA 58.027 39.130 6.67 0.00 0.00 2.10
6207 6617 9.023962 AGAATGTGGCTTAAGATAATTTTCACA 57.976 29.630 6.67 7.11 37.09 3.58
6229 6639 6.989169 CACAGATTCAAAATTTACCCAAACCA 59.011 34.615 0.00 0.00 0.00 3.67
6358 6820 0.108804 TAAACAGGAGGCTCGAAGCG 60.109 55.000 8.69 0.00 43.62 4.68
6436 6898 3.374042 TGGGTCAAAACAACTGAAGGA 57.626 42.857 0.00 0.00 0.00 3.36
6914 7376 7.664552 ATTGGGCTTGATCATCATCTTTTTA 57.335 32.000 0.00 0.00 0.00 1.52
6961 7423 0.742990 CGCAGGTTTGGCCGATTCTA 60.743 55.000 0.00 0.00 43.70 2.10
7005 7467 2.675423 GTTTTGGGGTCCCGGAGC 60.675 66.667 0.73 8.20 39.42 4.70
7047 7509 1.301165 AGGGTGCGTTTACGTGTCC 60.301 57.895 0.00 4.49 42.22 4.02
7051 7513 2.010286 TGCGTTTACGTGTCCGTCG 61.010 57.895 0.00 0.00 46.28 5.12
7064 7526 1.947146 CCGTCGTCAACACTCGCAA 60.947 57.895 0.00 0.00 0.00 4.85
7070 7532 2.609916 TCGTCAACACTCGCAATTTTGA 59.390 40.909 0.00 0.00 0.00 2.69
7106 7568 4.616604 CGTTTCGTGGACTATTACTCACCA 60.617 45.833 0.00 0.00 0.00 4.17
7209 7671 1.406341 CCGATTCTGGCCCGTTTCTTA 60.406 52.381 0.00 0.00 0.00 2.10
7212 7674 3.741388 CGATTCTGGCCCGTTTCTTAGAT 60.741 47.826 0.00 0.00 0.00 1.98
7284 7748 0.377905 GGTGCGTTTACGTGTTGGTT 59.622 50.000 0.00 0.00 42.22 3.67
7315 7779 1.247567 CAGTTTTGGCCGATTCTGGT 58.752 50.000 13.94 0.00 0.00 4.00
7336 7800 3.950397 TCCGTTTCATGGACTATTGCTT 58.050 40.909 0.00 0.00 0.00 3.91
7463 7930 5.505780 TGGACTATTACTCACCATTTTGGG 58.494 41.667 0.00 0.00 43.37 4.12
7491 7958 2.093973 AGAGCGATTTCCACGATTGACT 60.094 45.455 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.490663 CCGAGCTTAATTAAGAACATTAAACAG 57.509 33.333 26.00 0.00 35.33 3.16
345 347 2.300437 CTCCCTCCGTCCCTAAATGATC 59.700 54.545 0.00 0.00 0.00 2.92
385 387 2.806244 CCGATAATTTTACGGGAGCTGG 59.194 50.000 0.00 0.00 42.48 4.85
523 801 3.871594 AGTGTTACAGTGAACTCTGCAAC 59.128 43.478 0.00 10.92 40.25 4.17
529 807 4.569564 ACCGAAAAGTGTTACAGTGAACTC 59.430 41.667 0.00 0.00 0.00 3.01
541 819 5.310451 TCCTAAATAGCAACCGAAAAGTGT 58.690 37.500 0.00 0.00 0.00 3.55
552 830 7.857456 TCATGTTTAGTCCTCCTAAATAGCAA 58.143 34.615 0.00 0.00 45.07 3.91
641 919 9.790389 AGTAAACAGTCTCTAATGACGAATTAG 57.210 33.333 13.19 13.19 46.36 1.73
786 1081 5.437289 TTTTCCATTGCTACAGTGACTTG 57.563 39.130 0.00 0.00 0.00 3.16
800 1095 6.814146 TGTTTAGTTCGCAAAGTTTTTCCATT 59.186 30.769 0.00 0.00 0.00 3.16
1150 1475 4.736126 ACAGCTGTATGCAGTATGTACA 57.264 40.909 20.16 0.00 45.94 2.90
1151 1476 6.040247 TGTAACAGCTGTATGCAGTATGTAC 58.960 40.000 22.01 14.55 45.94 2.90
1152 1477 6.215495 TGTAACAGCTGTATGCAGTATGTA 57.785 37.500 22.01 1.23 45.94 2.29
1153 1478 5.084818 TGTAACAGCTGTATGCAGTATGT 57.915 39.130 22.01 13.88 45.94 2.29
1167 1492 8.177663 GGAATATGCATGTATGTATGTAACAGC 58.822 37.037 10.16 0.00 42.70 4.40
1168 1493 9.440773 AGGAATATGCATGTATGTATGTAACAG 57.559 33.333 10.16 0.00 42.70 3.16
1169 1494 9.791801 AAGGAATATGCATGTATGTATGTAACA 57.208 29.630 10.16 0.00 43.86 2.41
1268 1593 4.665212 CTGACCACATCAATAACATGCAC 58.335 43.478 0.00 0.00 36.69 4.57
1442 1767 4.197807 CGCGCGCGTATATATATAAGATCG 59.802 45.833 42.49 15.87 34.35 3.69
1463 1788 3.680072 GATACACACACACGCGCGC 62.680 63.158 32.58 23.91 0.00 6.86
1465 1790 0.442310 ATTGATACACACACACGCGC 59.558 50.000 5.73 0.00 0.00 6.86
1466 1791 2.411748 AGAATTGATACACACACACGCG 59.588 45.455 3.53 3.53 0.00 6.01
1467 1792 5.445939 CCTTAGAATTGATACACACACACGC 60.446 44.000 0.00 0.00 0.00 5.34
1468 1793 5.445939 GCCTTAGAATTGATACACACACACG 60.446 44.000 0.00 0.00 0.00 4.49
1738 2105 8.020777 TGGCCATATTTATGAACATGATTTGT 57.979 30.769 0.00 0.00 41.53 2.83
1739 2106 8.931775 CATGGCCATATTTATGAACATGATTTG 58.068 33.333 20.30 0.00 42.92 2.32
1740 2107 8.653191 ACATGGCCATATTTATGAACATGATTT 58.347 29.630 20.30 11.70 42.92 2.17
1741 2108 8.197592 ACATGGCCATATTTATGAACATGATT 57.802 30.769 20.30 12.12 42.92 2.57
1742 2109 7.786046 ACATGGCCATATTTATGAACATGAT 57.214 32.000 20.30 14.80 42.92 2.45
1743 2110 7.435305 CAACATGGCCATATTTATGAACATGA 58.565 34.615 20.30 0.00 42.92 3.07
1744 2111 6.647481 CCAACATGGCCATATTTATGAACATG 59.353 38.462 20.30 20.57 44.16 3.21
1745 2112 6.239657 CCCAACATGGCCATATTTATGAACAT 60.240 38.462 20.30 0.00 35.79 2.71
1746 2113 5.070180 CCCAACATGGCCATATTTATGAACA 59.930 40.000 20.30 0.00 35.79 3.18
1747 2114 5.070313 ACCCAACATGGCCATATTTATGAAC 59.930 40.000 20.30 0.00 35.79 3.18
1748 2115 5.215069 ACCCAACATGGCCATATTTATGAA 58.785 37.500 20.30 0.00 35.79 2.57
1749 2116 4.813809 ACCCAACATGGCCATATTTATGA 58.186 39.130 20.30 0.00 35.79 2.15
1750 2117 5.549742 AACCCAACATGGCCATATTTATG 57.450 39.130 20.30 9.33 35.79 1.90
1751 2118 6.573712 AAAACCCAACATGGCCATATTTAT 57.426 33.333 20.30 0.00 35.79 1.40
1752 2119 7.682787 ATAAAACCCAACATGGCCATATTTA 57.317 32.000 20.30 14.22 35.79 1.40
1753 2120 4.925390 AAAACCCAACATGGCCATATTT 57.075 36.364 20.30 12.03 35.79 1.40
1754 2121 6.573712 AATAAAACCCAACATGGCCATATT 57.426 33.333 20.30 11.66 35.79 1.28
1755 2122 6.069731 ACAAATAAAACCCAACATGGCCATAT 60.070 34.615 20.30 3.35 35.79 1.78
1756 2123 5.249393 ACAAATAAAACCCAACATGGCCATA 59.751 36.000 20.30 0.00 35.79 2.74
1757 2124 4.042684 ACAAATAAAACCCAACATGGCCAT 59.957 37.500 14.09 14.09 35.79 4.40
1758 2125 3.392616 ACAAATAAAACCCAACATGGCCA 59.607 39.130 8.56 8.56 35.79 5.36
1759 2126 3.750652 CACAAATAAAACCCAACATGGCC 59.249 43.478 0.00 0.00 35.79 5.36
1760 2127 4.384940 ACACAAATAAAACCCAACATGGC 58.615 39.130 0.00 0.00 35.79 4.40
1761 2128 8.502387 CAAATACACAAATAAAACCCAACATGG 58.498 33.333 0.00 0.00 37.25 3.66
1762 2129 8.502387 CCAAATACACAAATAAAACCCAACATG 58.498 33.333 0.00 0.00 0.00 3.21
1763 2130 7.174080 GCCAAATACACAAATAAAACCCAACAT 59.826 33.333 0.00 0.00 0.00 2.71
1764 2131 6.483640 GCCAAATACACAAATAAAACCCAACA 59.516 34.615 0.00 0.00 0.00 3.33
1765 2132 6.346999 CGCCAAATACACAAATAAAACCCAAC 60.347 38.462 0.00 0.00 0.00 3.77
1766 2133 5.696724 CGCCAAATACACAAATAAAACCCAA 59.303 36.000 0.00 0.00 0.00 4.12
1767 2134 5.230942 CGCCAAATACACAAATAAAACCCA 58.769 37.500 0.00 0.00 0.00 4.51
1768 2135 4.627900 CCGCCAAATACACAAATAAAACCC 59.372 41.667 0.00 0.00 0.00 4.11
1769 2136 5.471257 TCCGCCAAATACACAAATAAAACC 58.529 37.500 0.00 0.00 0.00 3.27
1770 2137 7.589574 ATTCCGCCAAATACACAAATAAAAC 57.410 32.000 0.00 0.00 0.00 2.43
1771 2138 8.499162 CAAATTCCGCCAAATACACAAATAAAA 58.501 29.630 0.00 0.00 0.00 1.52
1772 2139 7.118390 CCAAATTCCGCCAAATACACAAATAAA 59.882 33.333 0.00 0.00 0.00 1.40
1773 2140 6.591834 CCAAATTCCGCCAAATACACAAATAA 59.408 34.615 0.00 0.00 0.00 1.40
1774 2141 6.102663 CCAAATTCCGCCAAATACACAAATA 58.897 36.000 0.00 0.00 0.00 1.40
1775 2142 4.934602 CCAAATTCCGCCAAATACACAAAT 59.065 37.500 0.00 0.00 0.00 2.32
1776 2143 4.310769 CCAAATTCCGCCAAATACACAAA 58.689 39.130 0.00 0.00 0.00 2.83
1777 2144 3.862642 GCCAAATTCCGCCAAATACACAA 60.863 43.478 0.00 0.00 0.00 3.33
1778 2145 2.353208 GCCAAATTCCGCCAAATACACA 60.353 45.455 0.00 0.00 0.00 3.72
1779 2146 2.267426 GCCAAATTCCGCCAAATACAC 58.733 47.619 0.00 0.00 0.00 2.90
1780 2147 1.895798 TGCCAAATTCCGCCAAATACA 59.104 42.857 0.00 0.00 0.00 2.29
1781 2148 2.663826 TGCCAAATTCCGCCAAATAC 57.336 45.000 0.00 0.00 0.00 1.89
1782 2149 3.196469 TGAATGCCAAATTCCGCCAAATA 59.804 39.130 0.00 0.00 0.00 1.40
1783 2150 2.027377 TGAATGCCAAATTCCGCCAAAT 60.027 40.909 0.00 0.00 0.00 2.32
1784 2151 1.345741 TGAATGCCAAATTCCGCCAAA 59.654 42.857 0.00 0.00 0.00 3.28
1785 2152 0.972134 TGAATGCCAAATTCCGCCAA 59.028 45.000 0.00 0.00 0.00 4.52
1786 2153 0.972134 TTGAATGCCAAATTCCGCCA 59.028 45.000 0.00 0.00 0.00 5.69
1787 2154 2.091852 TTTGAATGCCAAATTCCGCC 57.908 45.000 0.00 0.00 39.65 6.13
1794 2161 7.615394 GCATGCATACTCATTTGAATGCCAAA 61.615 38.462 14.21 0.00 45.42 3.28
1795 2162 5.353111 CATGCATACTCATTTGAATGCCAA 58.647 37.500 0.00 0.00 43.19 4.52
1796 2163 4.738243 GCATGCATACTCATTTGAATGCCA 60.738 41.667 14.21 4.36 45.42 4.92
1797 2164 3.739300 GCATGCATACTCATTTGAATGCC 59.261 43.478 14.21 0.00 45.42 4.40
1798 2165 4.966850 GCATGCATACTCATTTGAATGC 57.033 40.909 14.21 9.32 45.13 3.56
1799 2166 4.939271 TGGCATGCATACTCATTTGAATG 58.061 39.130 21.36 0.00 37.75 2.67
1800 2167 5.601583 TTGGCATGCATACTCATTTGAAT 57.398 34.783 21.36 0.00 0.00 2.57
1801 2168 5.601583 ATTGGCATGCATACTCATTTGAA 57.398 34.783 21.36 0.00 0.00 2.69
1802 2169 6.265876 ACATATTGGCATGCATACTCATTTGA 59.734 34.615 21.36 0.00 0.00 2.69
1803 2170 6.452242 ACATATTGGCATGCATACTCATTTG 58.548 36.000 21.36 6.31 0.00 2.32
1804 2171 6.659745 ACATATTGGCATGCATACTCATTT 57.340 33.333 21.36 1.57 0.00 2.32
1805 2172 7.949690 ATACATATTGGCATGCATACTCATT 57.050 32.000 21.36 6.76 0.00 2.57
1806 2173 7.949690 AATACATATTGGCATGCATACTCAT 57.050 32.000 21.36 2.13 0.00 2.90
1807 2174 9.465199 AATAATACATATTGGCATGCATACTCA 57.535 29.630 21.36 4.57 32.88 3.41
1812 2179 9.439500 GGAAAAATAATACATATTGGCATGCAT 57.561 29.630 21.36 7.95 34.41 3.96
1813 2180 8.427276 TGGAAAAATAATACATATTGGCATGCA 58.573 29.630 21.36 0.00 34.41 3.96
1814 2181 8.830201 TGGAAAAATAATACATATTGGCATGC 57.170 30.769 9.90 9.90 34.41 4.06
1816 2183 9.439500 GCATGGAAAAATAATACATATTGGCAT 57.561 29.630 0.00 0.00 34.41 4.40
1817 2184 8.427276 TGCATGGAAAAATAATACATATTGGCA 58.573 29.630 0.00 0.00 34.41 4.92
1818 2185 8.830201 TGCATGGAAAAATAATACATATTGGC 57.170 30.769 0.00 0.00 34.41 4.52
1838 2205 4.388485 TGTTAGCTACCACCATATGCATG 58.612 43.478 10.16 0.00 0.00 4.06
1839 2206 4.705110 TGTTAGCTACCACCATATGCAT 57.295 40.909 3.79 3.79 0.00 3.96
1840 2207 4.495690 TTGTTAGCTACCACCATATGCA 57.504 40.909 0.00 0.00 0.00 3.96
1841 2208 5.530915 TGATTTGTTAGCTACCACCATATGC 59.469 40.000 0.00 0.00 0.00 3.14
1842 2209 7.229306 ACATGATTTGTTAGCTACCACCATATG 59.771 37.037 0.00 0.00 33.74 1.78
1843 2210 7.290061 ACATGATTTGTTAGCTACCACCATAT 58.710 34.615 0.00 0.00 33.74 1.78
1844 2211 6.658849 ACATGATTTGTTAGCTACCACCATA 58.341 36.000 0.00 0.00 33.74 2.74
1845 2212 5.509498 ACATGATTTGTTAGCTACCACCAT 58.491 37.500 0.00 0.00 33.74 3.55
1846 2213 4.917385 ACATGATTTGTTAGCTACCACCA 58.083 39.130 0.00 0.00 33.74 4.17
1847 2214 5.897377 AACATGATTTGTTAGCTACCACC 57.103 39.130 0.00 0.00 46.75 4.61
2086 2453 4.863131 GTGTTCAGGTAGAGTAAACCGATG 59.137 45.833 0.00 0.00 42.15 3.84
2223 2590 0.921896 ACCAGCCTCTGCATTATGGT 59.078 50.000 4.03 4.03 37.46 3.55
2562 2935 7.390718 TGGCTTCTTAGACTTTAATTTCAGGTC 59.609 37.037 0.00 0.00 0.00 3.85
2703 3076 4.404507 TTGAAGCTTGCAGAACGAATAC 57.595 40.909 2.10 0.00 0.00 1.89
2704 3077 4.274705 TGTTTGAAGCTTGCAGAACGAATA 59.725 37.500 2.10 0.00 0.00 1.75
2705 3078 3.066621 TGTTTGAAGCTTGCAGAACGAAT 59.933 39.130 2.10 0.00 0.00 3.34
2785 3162 9.282247 CAAGCACACATTAGCTCTTATTTTTAG 57.718 33.333 0.00 0.00 40.90 1.85
3002 3399 7.493971 CAGCTGCTAGTATATTGAACTGTTTCT 59.506 37.037 0.00 0.00 32.36 2.52
3285 3682 3.712907 ATCACCCAACCCGACCCG 61.713 66.667 0.00 0.00 0.00 5.28
3348 3745 7.959658 TCCAATCCAACTCAAATCAACATAT 57.040 32.000 0.00 0.00 0.00 1.78
3409 3806 0.890996 CCTGAACCAACCTGACCAGC 60.891 60.000 0.00 0.00 0.00 4.85
3410 3807 0.474184 ACCTGAACCAACCTGACCAG 59.526 55.000 0.00 0.00 0.00 4.00
3411 3808 0.472471 GACCTGAACCAACCTGACCA 59.528 55.000 0.00 0.00 0.00 4.02
3416 3813 0.765510 GACCTGACCTGAACCAACCT 59.234 55.000 0.00 0.00 0.00 3.50
3469 3866 0.375454 AATCTGCTCGACTCGACTCG 59.625 55.000 8.00 8.00 34.83 4.18
3470 3867 2.096819 AGAAATCTGCTCGACTCGACTC 59.903 50.000 0.00 0.00 0.00 3.36
3735 4137 9.301153 TCTTTGTGCTTAAGAGAAATTTTTGAC 57.699 29.630 6.67 0.00 0.00 3.18
3963 4365 3.021695 CACACCATTCTCCTCATGCAAT 58.978 45.455 0.00 0.00 0.00 3.56
4154 4556 8.789825 TTGGTAAATAACAGCTTTATCGGTAA 57.210 30.769 0.00 0.00 0.00 2.85
4691 5094 8.856153 TTAAGGAATGCATTCTGTAAACACTA 57.144 30.769 32.48 12.03 37.00 2.74
5090 5496 9.953565 TCAGTTATACTAAAAATGTGCTAACCT 57.046 29.630 0.00 0.00 0.00 3.50
5482 5888 8.767478 TCTAGTACTTAATTTGTTGCCAGTAC 57.233 34.615 0.00 0.00 37.80 2.73
5642 6049 6.092259 GTGGTGCTAAGGTTACAAGATACAAG 59.908 42.308 0.00 0.00 0.00 3.16
5846 6254 3.816523 CTCTCCCTGTCTCGGTATACTTC 59.183 52.174 2.25 0.00 0.00 3.01
6207 6617 8.271458 ACTTTGGTTTGGGTAAATTTTGAATCT 58.729 29.630 0.00 0.00 0.00 2.40
6358 6820 9.515020 TTGAAATTGCTTGTAATAAATCGATCC 57.485 29.630 0.00 0.00 0.00 3.36
6436 6898 2.099263 CCGGTTGATCACATCTCGTAGT 59.901 50.000 0.00 0.00 0.00 2.73
6669 7131 7.400599 ACTTGTGTCATGCAATAATGAATCT 57.599 32.000 0.00 0.00 38.28 2.40
6757 7219 3.711704 CTCCTCCTACTTATTTCCCAGCA 59.288 47.826 0.00 0.00 0.00 4.41
6789 7251 9.531158 AATCAAAGAGAAGATTGAAGGAAGATT 57.469 29.630 0.00 0.00 38.88 2.40
6961 7423 3.778629 AGTAATAGTCCATGAAACGGGGT 59.221 43.478 0.00 0.00 0.00 4.95
7047 7509 0.506932 AATTGCGAGTGTTGACGACG 59.493 50.000 0.00 0.00 0.00 5.12
7051 7513 3.042887 GGTCAAAATTGCGAGTGTTGAC 58.957 45.455 14.54 14.54 44.66 3.18
7064 7526 1.474330 GGGCCAGAATCGGTCAAAAT 58.526 50.000 4.39 0.00 29.64 1.82
7070 7532 1.376812 GAAACGGGCCAGAATCGGT 60.377 57.895 10.86 0.00 0.00 4.69
7209 7671 6.424032 GGACCCCAAAACTGAGTAATAATCT 58.576 40.000 0.00 0.00 0.00 2.40
7212 7674 4.566070 CGGGACCCCAAAACTGAGTAATAA 60.566 45.833 4.46 0.00 35.37 1.40
7284 7748 2.225491 GCCAAAACTGCGAGTGTTGATA 59.775 45.455 16.29 0.00 44.33 2.15
7315 7779 3.627395 AGCAATAGTCCATGAAACGGA 57.373 42.857 0.00 0.00 0.00 4.69
7336 7800 0.613853 CTCCGGGACCCAAGACAGTA 60.614 60.000 12.15 0.00 0.00 2.74
7463 7930 1.153147 GGAAATCGCTCTGGGACCC 60.153 63.158 2.45 2.45 0.00 4.46
7491 7958 1.688535 TAAACGCACCCCGGGGATA 60.689 57.895 46.68 23.11 42.52 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.