Multiple sequence alignment - TraesCS5D01G183400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G183400 chr5D 100.000 4467 0 0 1 4467 285134630 285130164 0.000000e+00 8250.0
1 TraesCS5D01G183400 chr5B 94.333 3847 157 22 1 3818 322556768 322552954 0.000000e+00 5840.0
2 TraesCS5D01G183400 chr5A 94.295 2086 83 14 61 2121 376995532 376993458 0.000000e+00 3160.0
3 TraesCS5D01G183400 chr5A 90.221 1943 117 28 2151 4053 376993460 376991551 0.000000e+00 2468.0
4 TraesCS5D01G183400 chr5A 91.111 315 20 5 4159 4467 457087880 457088192 1.920000e-113 420.0
5 TraesCS5D01G183400 chr5A 100.000 80 0 0 4 83 376995614 376995535 1.000000e-31 148.0
6 TraesCS5D01G183400 chr7D 91.940 335 14 7 4142 4467 45011203 45010873 1.460000e-124 457.0
7 TraesCS5D01G183400 chr7D 91.265 332 18 7 4142 4467 136187670 136187344 4.100000e-120 442.0
8 TraesCS5D01G183400 chr7D 90.462 346 10 13 4142 4467 635005687 635005345 6.860000e-118 435.0
9 TraesCS5D01G183400 chr7D 96.970 33 0 1 4115 4147 45011239 45011208 2.000000e-03 54.7
10 TraesCS5D01G183400 chr3D 91.642 335 14 8 4142 4467 607570631 607570960 6.810000e-123 451.0
11 TraesCS5D01G183400 chr3D 90.476 336 18 7 4142 4467 33135307 33134976 8.880000e-117 431.0
12 TraesCS5D01G183400 chr3D 89.318 337 22 8 4142 4467 21583931 21584264 1.160000e-110 411.0
13 TraesCS5D01G183400 chr4D 90.448 335 19 8 4142 4467 389518846 389519176 3.190000e-116 429.0
14 TraesCS5D01G183400 chr2D 90.244 328 22 6 4145 4467 538757234 538756912 1.920000e-113 420.0
15 TraesCS5D01G183400 chr2B 91.054 313 21 6 4159 4467 621565758 621565449 2.490000e-112 416.0
16 TraesCS5D01G183400 chr6D 88.953 344 13 9 4142 4467 10765334 10765670 6.960000e-108 401.0
17 TraesCS5D01G183400 chr6D 87.080 387 9 12 4120 4467 133147748 133147364 2.500000e-107 399.0
18 TraesCS5D01G183400 chr6D 89.865 296 14 10 4186 4467 61134003 61134296 2.540000e-97 366.0
19 TraesCS5D01G183400 chr3B 89.137 313 15 8 4174 4467 383727992 383728304 5.460000e-99 372.0
20 TraesCS5D01G183400 chr3A 87.500 64 5 2 4120 4181 61484689 61484751 2.230000e-08 71.3
21 TraesCS5D01G183400 chrUn 100.000 28 0 0 4120 4147 333353178 333353205 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G183400 chr5D 285130164 285134630 4466 True 8250.000000 8250 100.000000 1 4467 1 chr5D.!!$R1 4466
1 TraesCS5D01G183400 chr5B 322552954 322556768 3814 True 5840.000000 5840 94.333000 1 3818 1 chr5B.!!$R1 3817
2 TraesCS5D01G183400 chr5A 376991551 376995614 4063 True 1925.333333 3160 94.838667 4 4053 3 chr5A.!!$R1 4049


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 414 1.006832 GCGTTATGATGCTCCGTGTT 58.993 50.000 0.00 0.0 34.88 3.32 F
421 453 2.732282 GCCCGACTAATTTTTCAGCTGC 60.732 50.000 9.47 0.0 0.00 5.25 F
1936 1988 2.887152 ACTTTGTCCTTGCACTTCCATC 59.113 45.455 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 2363 0.678048 GGCATCTTCCTTGCGAGGTT 60.678 55.000 19.96 1.07 43.97 3.50 R
2319 2380 3.502595 GTCCAAAAGACTACAAAGAGGGC 59.497 47.826 0.00 0.00 42.69 5.19 R
3732 3813 1.671261 GCTCGTCTTGCATCAGACACT 60.671 52.381 16.70 0.00 43.11 3.55 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
344 370 5.813672 CGGTCAAATTTTTATCGAGGACCTA 59.186 40.000 14.54 0.00 41.00 3.08
388 414 1.006832 GCGTTATGATGCTCCGTGTT 58.993 50.000 0.00 0.00 34.88 3.32
395 421 3.232213 TGATGCTCCGTGTTAGTCTTC 57.768 47.619 0.00 0.00 0.00 2.87
421 453 2.732282 GCCCGACTAATTTTTCAGCTGC 60.732 50.000 9.47 0.00 0.00 5.25
429 461 5.979517 ACTAATTTTTCAGCTGCTTGTTGTC 59.020 36.000 9.47 0.00 0.00 3.18
455 489 4.668576 TGTTGCGCTAAAAAGAGATCTG 57.331 40.909 9.73 0.00 0.00 2.90
513 547 6.887013 TCCTTTGTACGGCTGGTTAAATATA 58.113 36.000 0.00 0.00 0.00 0.86
514 548 7.511268 TCCTTTGTACGGCTGGTTAAATATAT 58.489 34.615 0.00 0.00 0.00 0.86
515 549 7.994334 TCCTTTGTACGGCTGGTTAAATATATT 59.006 33.333 0.00 0.00 0.00 1.28
518 552 8.734218 TTGTACGGCTGGTTAAATATATTTGA 57.266 30.769 18.98 9.50 0.00 2.69
615 658 6.672266 TGGTGATGGAGTATTTATCCTCTC 57.328 41.667 0.00 0.00 37.74 3.20
676 719 6.904954 ATAAGTTACGTGTCAATTTTTGCG 57.095 33.333 0.00 0.00 0.00 4.85
801 844 5.176958 GCTGAACAGTCACTTAACATTACGT 59.823 40.000 0.00 0.00 0.00 3.57
825 868 3.917988 AGCCTTTTTGCAAGCTTATGAC 58.082 40.909 0.00 0.00 29.27 3.06
852 895 4.379302 AATCCATGGCTTATCCTCCTTC 57.621 45.455 6.96 0.00 35.26 3.46
1179 1231 6.417930 GCAAGTTCTTGAATGGTCTTGTTTAC 59.582 38.462 15.52 0.00 35.96 2.01
1482 1534 7.959658 TGTTGGACAAGATGAATTGGATAAT 57.040 32.000 0.00 0.00 34.36 1.28
1591 1643 3.249799 TGTTACGATTGGTGAGCAACTTG 59.750 43.478 0.00 0.00 0.00 3.16
1664 1716 8.834465 TCTTATATGATTTCTTCTTTCAGCTGC 58.166 33.333 9.47 0.00 0.00 5.25
1864 1916 3.620427 TTGGCCATGTACGATGTAAGT 57.380 42.857 6.09 0.00 0.00 2.24
1911 1963 9.482627 CCATTACTTTGATATGTCTCCTTAGTC 57.517 37.037 0.00 0.00 0.00 2.59
1926 1978 6.434652 TCTCCTTAGTCTCTACTTTGTCCTTG 59.565 42.308 0.00 0.00 37.15 3.61
1936 1988 2.887152 ACTTTGTCCTTGCACTTCCATC 59.113 45.455 0.00 0.00 0.00 3.51
1974 2026 3.684788 CCAAAATGTGAGGTCCTAAGTCG 59.315 47.826 0.00 0.00 0.00 4.18
2084 2144 5.880901 ACTTGGTCATTTGACTTAGGACAT 58.119 37.500 10.32 0.00 44.20 3.06
2086 2146 4.503910 TGGTCATTTGACTTAGGACATCG 58.496 43.478 10.32 0.00 44.20 3.84
2185 2245 7.034685 ACAATTTTAAAAAGTAGGTCGCTGT 57.965 32.000 4.44 0.00 0.00 4.40
2203 2263 4.314121 GCTGTTTTTGGTGGCAAATGATA 58.686 39.130 0.00 0.00 0.00 2.15
2288 2349 9.625747 TTGTAATTGCTATTATCCATTGTCTCA 57.374 29.630 3.92 0.00 0.00 3.27
2315 2376 8.455682 CAAGTATTTTATAAACCTCGCAAGGAA 58.544 33.333 0.00 0.00 46.67 3.36
2319 2380 6.677781 TTTATAAACCTCGCAAGGAAGATG 57.322 37.500 0.00 0.00 46.67 2.90
2381 2449 7.190920 AGTAATAGAAGCACACTGTTTTGTC 57.809 36.000 0.00 0.00 0.00 3.18
2406 2475 7.039434 TCCTGTTCTATAAGGCTGTATCTGATG 60.039 40.741 0.00 0.00 33.25 3.07
2577 2646 6.279882 TGAACCTGTTGTGAATTCAATTTCC 58.720 36.000 10.35 0.00 0.00 3.13
2638 2707 0.105964 TGTGGCAGTAGTGTCCACAC 59.894 55.000 28.33 19.00 46.77 3.82
2657 2726 1.078709 CTGTTATGACGCACCCACAG 58.921 55.000 0.00 0.00 0.00 3.66
2673 2742 2.282674 AGCTGGGTGCCACATGTG 60.283 61.111 19.31 19.31 44.23 3.21
2703 2772 3.427161 GCTAAGCAGCTTTGTATTGGG 57.573 47.619 14.29 0.00 44.93 4.12
2704 2773 2.755103 GCTAAGCAGCTTTGTATTGGGT 59.245 45.455 14.29 0.00 44.93 4.51
2705 2774 3.428045 GCTAAGCAGCTTTGTATTGGGTG 60.428 47.826 14.29 0.00 44.93 4.61
2706 2775 1.549203 AGCAGCTTTGTATTGGGTGG 58.451 50.000 0.00 0.00 0.00 4.61
2707 2776 0.108662 GCAGCTTTGTATTGGGTGGC 60.109 55.000 0.00 0.00 0.00 5.01
2708 2777 1.549203 CAGCTTTGTATTGGGTGGCT 58.451 50.000 0.00 0.00 0.00 4.75
2709 2778 1.895131 CAGCTTTGTATTGGGTGGCTT 59.105 47.619 0.00 0.00 0.00 4.35
2710 2779 2.299867 CAGCTTTGTATTGGGTGGCTTT 59.700 45.455 0.00 0.00 0.00 3.51
2711 2780 2.299867 AGCTTTGTATTGGGTGGCTTTG 59.700 45.455 0.00 0.00 0.00 2.77
2712 2781 2.037121 GCTTTGTATTGGGTGGCTTTGT 59.963 45.455 0.00 0.00 0.00 2.83
2713 2782 3.494223 GCTTTGTATTGGGTGGCTTTGTT 60.494 43.478 0.00 0.00 0.00 2.83
2714 2783 4.702831 CTTTGTATTGGGTGGCTTTGTTT 58.297 39.130 0.00 0.00 0.00 2.83
2729 2798 8.082242 GTGGCTTTGTTTCTGATTACTTACATT 58.918 33.333 0.00 0.00 0.00 2.71
3116 3188 5.923114 GCCTTGAAGACCTTTTCTTTTGATC 59.077 40.000 0.00 0.00 45.24 2.92
3276 3353 1.476652 CCGAGAGAGGAGCAGAGATCA 60.477 57.143 0.00 0.00 0.00 2.92
3485 3562 7.093156 ACAGATGATATGTCAGGAGTTTTCTCA 60.093 37.037 0.00 0.00 41.27 3.27
3732 3813 2.899976 CATAGTACATCCCGTGTTGCA 58.100 47.619 0.00 0.00 42.29 4.08
3778 3859 0.329261 TTGTAGCCAAGGCATCAGCT 59.671 50.000 14.40 0.62 44.88 4.24
3803 3884 7.617041 ATGTCTACTATGTTTGCTTTTCTCC 57.383 36.000 0.00 0.00 0.00 3.71
3810 3891 8.106247 ACTATGTTTGCTTTTCTCCGATTTAA 57.894 30.769 0.00 0.00 0.00 1.52
3856 3937 6.161381 AGTTGACATTTGATTTGATGGCTTC 58.839 36.000 0.00 0.00 32.40 3.86
3877 3958 2.970379 ATCATGGTGCAGGCGTCCA 61.970 57.895 9.67 9.67 35.64 4.02
3964 4064 5.301555 CATTGCCATAAATGCATTGATGGA 58.698 37.500 42.36 29.78 41.23 3.41
3984 4084 5.089434 TGGACACTCCATATCAGCTATCAT 58.911 41.667 0.00 0.00 42.67 2.45
4025 4125 4.633565 TGATATACGTTTGCATCAACAGCA 59.366 37.500 0.00 0.00 40.85 4.41
4034 4134 6.332630 GTTTGCATCAACAGCATAGGTAAAT 58.667 36.000 0.00 0.00 42.33 1.40
4053 4153 5.520376 AAATTTTCTGGAATATCAGGGCG 57.480 39.130 0.00 0.00 35.58 6.13
4054 4154 3.644966 TTTTCTGGAATATCAGGGCGT 57.355 42.857 0.00 0.00 35.58 5.68
4055 4155 3.644966 TTTCTGGAATATCAGGGCGTT 57.355 42.857 0.00 0.00 35.58 4.84
4056 4156 2.620251 TCTGGAATATCAGGGCGTTG 57.380 50.000 0.00 0.00 35.58 4.10
4057 4157 0.947244 CTGGAATATCAGGGCGTTGC 59.053 55.000 0.00 0.00 0.00 4.17
4058 4158 0.546122 TGGAATATCAGGGCGTTGCT 59.454 50.000 0.00 0.00 0.00 3.91
4059 4159 0.947244 GGAATATCAGGGCGTTGCTG 59.053 55.000 0.00 0.00 0.00 4.41
4060 4160 0.947244 GAATATCAGGGCGTTGCTGG 59.053 55.000 0.00 0.00 0.00 4.85
4061 4161 1.103398 AATATCAGGGCGTTGCTGGC 61.103 55.000 0.00 0.00 0.00 4.85
4068 4168 2.870372 GCGTTGCTGGCCTTAGTG 59.130 61.111 3.32 0.00 0.00 2.74
4069 4169 1.671054 GCGTTGCTGGCCTTAGTGA 60.671 57.895 3.32 0.00 0.00 3.41
4070 4170 1.912371 GCGTTGCTGGCCTTAGTGAC 61.912 60.000 3.32 0.00 0.00 3.67
4071 4171 0.602638 CGTTGCTGGCCTTAGTGACA 60.603 55.000 3.32 0.00 0.00 3.58
4072 4172 1.604604 GTTGCTGGCCTTAGTGACAA 58.395 50.000 3.32 0.00 0.00 3.18
4073 4173 1.953686 GTTGCTGGCCTTAGTGACAAA 59.046 47.619 3.32 0.00 0.00 2.83
4074 4174 1.896220 TGCTGGCCTTAGTGACAAAG 58.104 50.000 3.32 0.00 0.00 2.77
4075 4175 1.168714 GCTGGCCTTAGTGACAAAGG 58.831 55.000 3.32 2.01 45.36 3.11
4076 4176 1.826385 CTGGCCTTAGTGACAAAGGG 58.174 55.000 3.32 0.00 43.21 3.95
4077 4177 0.404040 TGGCCTTAGTGACAAAGGGG 59.596 55.000 3.32 0.00 43.21 4.79
4078 4178 0.323451 GGCCTTAGTGACAAAGGGGG 60.323 60.000 7.82 0.00 43.21 5.40
4079 4179 0.404426 GCCTTAGTGACAAAGGGGGT 59.596 55.000 7.82 0.00 43.21 4.95
4080 4180 1.886655 GCCTTAGTGACAAAGGGGGTG 60.887 57.143 7.82 0.00 43.21 4.61
4081 4181 1.702957 CCTTAGTGACAAAGGGGGTGA 59.297 52.381 0.00 0.00 39.94 4.02
4082 4182 2.308866 CCTTAGTGACAAAGGGGGTGAT 59.691 50.000 0.00 0.00 39.94 3.06
4083 4183 3.610911 CTTAGTGACAAAGGGGGTGATC 58.389 50.000 0.00 0.00 0.00 2.92
4084 4184 0.698818 AGTGACAAAGGGGGTGATCC 59.301 55.000 0.00 0.00 0.00 3.36
4085 4185 0.698818 GTGACAAAGGGGGTGATCCT 59.301 55.000 0.00 0.00 35.88 3.24
4086 4186 1.913419 GTGACAAAGGGGGTGATCCTA 59.087 52.381 0.00 0.00 33.58 2.94
4087 4187 2.092914 GTGACAAAGGGGGTGATCCTAG 60.093 54.545 0.00 0.00 33.58 3.02
4088 4188 1.490910 GACAAAGGGGGTGATCCTAGG 59.509 57.143 0.82 0.82 33.58 3.02
4089 4189 1.082194 ACAAAGGGGGTGATCCTAGGA 59.918 52.381 15.46 15.46 33.58 2.94
4090 4190 2.294536 ACAAAGGGGGTGATCCTAGGAT 60.295 50.000 24.78 24.78 37.59 3.24
4105 4205 6.963117 TCCTAGGATCAGGGTAAAAAGAAA 57.037 37.500 7.62 0.00 36.26 2.52
4106 4206 7.337826 TCCTAGGATCAGGGTAAAAAGAAAA 57.662 36.000 7.62 0.00 36.26 2.29
4107 4207 7.761608 TCCTAGGATCAGGGTAAAAAGAAAAA 58.238 34.615 7.62 0.00 36.26 1.94
4108 4208 8.398743 TCCTAGGATCAGGGTAAAAAGAAAAAT 58.601 33.333 7.62 0.00 36.26 1.82
4109 4209 9.695155 CCTAGGATCAGGGTAAAAAGAAAAATA 57.305 33.333 1.05 0.00 31.47 1.40
4125 4225 8.845942 AAGAAAAATAAATAAATACCGGACGC 57.154 30.769 9.46 0.00 0.00 5.19
4126 4226 7.127686 AGAAAAATAAATAAATACCGGACGCG 58.872 34.615 9.46 3.53 0.00 6.01
4127 4227 4.996062 AATAAATAAATACCGGACGCGG 57.004 40.909 9.46 0.00 0.00 6.46
4128 4228 0.939419 AAATAAATACCGGACGCGGC 59.061 50.000 9.46 7.53 0.00 6.53
4129 4229 0.105408 AATAAATACCGGACGCGGCT 59.895 50.000 13.91 0.00 0.00 5.52
4130 4230 0.961019 ATAAATACCGGACGCGGCTA 59.039 50.000 13.91 0.00 0.00 3.93
4131 4231 0.743688 TAAATACCGGACGCGGCTAA 59.256 50.000 13.91 0.00 0.00 3.09
4132 4232 0.105408 AAATACCGGACGCGGCTAAT 59.895 50.000 13.91 0.00 0.00 1.73
4133 4233 0.319297 AATACCGGACGCGGCTAATC 60.319 55.000 13.91 0.00 0.00 1.75
4134 4234 1.177256 ATACCGGACGCGGCTAATCT 61.177 55.000 13.91 0.00 0.00 2.40
4135 4235 2.067091 TACCGGACGCGGCTAATCTG 62.067 60.000 13.91 3.31 0.00 2.90
4136 4236 3.330853 CGGACGCGGCTAATCTGC 61.331 66.667 13.91 0.00 43.66 4.26
4141 4241 3.272334 GCGGCTAATCTGCACCCG 61.272 66.667 0.00 0.00 46.35 5.28
4142 4242 2.499205 CGGCTAATCTGCACCCGA 59.501 61.111 0.00 0.00 41.34 5.14
4143 4243 1.592669 CGGCTAATCTGCACCCGAG 60.593 63.158 0.00 0.00 41.34 4.63
4144 4244 1.889573 GGCTAATCTGCACCCGAGC 60.890 63.158 0.00 0.00 34.04 5.03
4145 4245 1.144936 GCTAATCTGCACCCGAGCT 59.855 57.895 0.00 0.00 34.99 4.09
4146 4246 0.878086 GCTAATCTGCACCCGAGCTC 60.878 60.000 2.73 2.73 34.99 4.09
4147 4247 0.596083 CTAATCTGCACCCGAGCTCG 60.596 60.000 29.06 29.06 39.44 5.03
4157 4257 2.651361 CGAGCTCGGGTGAACAGT 59.349 61.111 28.40 0.00 35.37 3.55
4158 4258 1.880894 CGAGCTCGGGTGAACAGTA 59.119 57.895 28.40 0.00 35.37 2.74
4159 4259 0.242825 CGAGCTCGGGTGAACAGTAA 59.757 55.000 28.40 0.00 35.37 2.24
4160 4260 1.336517 CGAGCTCGGGTGAACAGTAAA 60.337 52.381 28.40 0.00 35.37 2.01
4161 4261 2.762745 GAGCTCGGGTGAACAGTAAAA 58.237 47.619 0.00 0.00 0.00 1.52
4162 4262 3.335579 GAGCTCGGGTGAACAGTAAAAT 58.664 45.455 0.00 0.00 0.00 1.82
4163 4263 3.335579 AGCTCGGGTGAACAGTAAAATC 58.664 45.455 0.00 0.00 0.00 2.17
4164 4264 2.093783 GCTCGGGTGAACAGTAAAATCG 59.906 50.000 0.00 0.00 0.00 3.34
4165 4265 3.581755 CTCGGGTGAACAGTAAAATCGA 58.418 45.455 0.00 0.00 0.00 3.59
4166 4266 3.991773 CTCGGGTGAACAGTAAAATCGAA 59.008 43.478 0.00 0.00 0.00 3.71
4167 4267 4.378774 TCGGGTGAACAGTAAAATCGAAA 58.621 39.130 0.00 0.00 0.00 3.46
4168 4268 4.998672 TCGGGTGAACAGTAAAATCGAAAT 59.001 37.500 0.00 0.00 0.00 2.17
4169 4269 6.164876 TCGGGTGAACAGTAAAATCGAAATA 58.835 36.000 0.00 0.00 0.00 1.40
4170 4270 6.649973 TCGGGTGAACAGTAAAATCGAAATAA 59.350 34.615 0.00 0.00 0.00 1.40
4171 4271 7.172875 TCGGGTGAACAGTAAAATCGAAATAAA 59.827 33.333 0.00 0.00 0.00 1.40
4172 4272 7.966204 CGGGTGAACAGTAAAATCGAAATAAAT 59.034 33.333 0.00 0.00 0.00 1.40
4173 4273 9.634163 GGGTGAACAGTAAAATCGAAATAAATT 57.366 29.630 0.00 0.00 0.00 1.82
4217 4317 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
4218 4318 8.687824 TTTGAGAGAAACATTGACAAAAGTTC 57.312 30.769 9.09 5.33 0.00 3.01
4219 4319 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
4220 4320 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
4221 4321 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
4222 4322 9.657121 GAGAGAAACATTGACAAAAGTTCTAAG 57.343 33.333 9.09 0.00 0.00 2.18
4223 4323 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
4224 4324 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
4225 4325 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
4226 4326 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
4227 4327 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
4228 4328 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
4229 4329 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
4230 4330 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
4231 4331 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
4232 4332 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
4233 4333 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
4234 4334 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
4235 4335 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
4236 4336 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
4237 4337 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
4238 4338 4.159377 TCTAAGTGCCTGCAAAAATTCG 57.841 40.909 0.00 0.00 0.00 3.34
4239 4339 2.888834 AAGTGCCTGCAAAAATTCGT 57.111 40.000 0.00 0.00 0.00 3.85
4240 4340 2.422276 AGTGCCTGCAAAAATTCGTC 57.578 45.000 0.00 0.00 0.00 4.20
4241 4341 1.680735 AGTGCCTGCAAAAATTCGTCA 59.319 42.857 0.00 0.00 0.00 4.35
4242 4342 2.297033 AGTGCCTGCAAAAATTCGTCAT 59.703 40.909 0.00 0.00 0.00 3.06
4243 4343 2.409378 GTGCCTGCAAAAATTCGTCATG 59.591 45.455 0.00 0.00 0.00 3.07
4244 4344 2.295629 TGCCTGCAAAAATTCGTCATGA 59.704 40.909 0.00 0.00 0.00 3.07
4245 4345 3.243670 TGCCTGCAAAAATTCGTCATGAA 60.244 39.130 0.00 0.00 41.81 2.57
4246 4346 3.740321 GCCTGCAAAAATTCGTCATGAAA 59.260 39.130 0.00 0.00 40.71 2.69
4247 4347 4.389687 GCCTGCAAAAATTCGTCATGAAAT 59.610 37.500 0.00 0.00 40.71 2.17
4248 4348 5.445010 GCCTGCAAAAATTCGTCATGAAATC 60.445 40.000 0.00 0.00 40.71 2.17
4249 4349 5.634439 CCTGCAAAAATTCGTCATGAAATCA 59.366 36.000 0.00 0.00 40.71 2.57
4250 4350 6.400303 CCTGCAAAAATTCGTCATGAAATCAC 60.400 38.462 0.00 0.00 40.71 3.06
4251 4351 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
4252 4352 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
4253 4353 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
4254 4354 7.685304 GCAAAAATTCGTCATGAAATCACATTC 59.315 33.333 0.00 0.00 40.71 2.67
4255 4355 7.816945 AAAATTCGTCATGAAATCACATTCC 57.183 32.000 0.00 0.00 40.71 3.01
4256 4356 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
4257 4357 7.864108 AATTCGTCATGAAATCACATTCCTA 57.136 32.000 0.00 0.00 40.71 2.94
4258 4358 6.908870 TTCGTCATGAAATCACATTCCTAG 57.091 37.500 0.00 0.00 32.37 3.02
4259 4359 6.220726 TCGTCATGAAATCACATTCCTAGA 57.779 37.500 0.00 0.00 0.00 2.43
4260 4360 6.639563 TCGTCATGAAATCACATTCCTAGAA 58.360 36.000 0.00 0.00 0.00 2.10
4261 4361 6.758416 TCGTCATGAAATCACATTCCTAGAAG 59.242 38.462 0.00 0.00 0.00 2.85
4262 4362 6.018425 CGTCATGAAATCACATTCCTAGAAGG 60.018 42.308 0.00 0.00 36.46 3.46
4263 4363 5.824624 TCATGAAATCACATTCCTAGAAGGC 59.175 40.000 0.00 0.00 34.61 4.35
4264 4364 4.191544 TGAAATCACATTCCTAGAAGGCG 58.808 43.478 0.00 0.00 34.61 5.52
4265 4365 3.914426 AATCACATTCCTAGAAGGCGT 57.086 42.857 0.00 0.00 34.61 5.68
4266 4366 2.672961 TCACATTCCTAGAAGGCGTG 57.327 50.000 0.00 0.00 34.61 5.34
4267 4367 1.207089 TCACATTCCTAGAAGGCGTGG 59.793 52.381 0.00 0.00 34.61 4.94
4268 4368 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01
4269 4369 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92
4270 4370 0.618458 ATTCCTAGAAGGCGTGGCAA 59.382 50.000 0.00 0.00 34.61 4.52
4271 4371 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.00 34.61 3.68
4272 4372 0.398696 TCCTAGAAGGCGTGGCAAAA 59.601 50.000 0.00 0.00 34.61 2.44
4273 4373 1.202830 TCCTAGAAGGCGTGGCAAAAA 60.203 47.619 0.00 0.00 34.61 1.94
4307 4407 6.986424 ACAATAAAAGCTACTTTCAAACGC 57.014 33.333 0.00 0.00 31.99 4.84
4308 4408 6.500041 ACAATAAAAGCTACTTTCAAACGCA 58.500 32.000 0.00 0.00 31.99 5.24
4309 4409 7.145323 ACAATAAAAGCTACTTTCAAACGCAT 58.855 30.769 0.00 0.00 31.99 4.73
4310 4410 7.651704 ACAATAAAAGCTACTTTCAAACGCATT 59.348 29.630 0.00 0.00 31.99 3.56
4311 4411 8.487176 CAATAAAAGCTACTTTCAAACGCATTT 58.513 29.630 0.00 0.00 31.99 2.32
4312 4412 6.902224 AAAAGCTACTTTCAAACGCATTTT 57.098 29.167 0.00 0.00 31.99 1.82
4313 4413 5.888412 AAGCTACTTTCAAACGCATTTTG 57.112 34.783 0.00 2.03 45.38 2.44
4321 4421 3.492725 CAAACGCATTTTGAAGCACAG 57.507 42.857 2.24 0.00 46.76 3.66
4322 4422 3.114809 CAAACGCATTTTGAAGCACAGA 58.885 40.909 2.24 0.00 46.76 3.41
4323 4423 3.435105 AACGCATTTTGAAGCACAGAA 57.565 38.095 0.00 0.00 0.00 3.02
4324 4424 3.648339 ACGCATTTTGAAGCACAGAAT 57.352 38.095 0.00 0.00 34.34 2.40
4325 4425 3.981211 ACGCATTTTGAAGCACAGAATT 58.019 36.364 0.00 0.00 32.19 2.17
4326 4426 4.370917 ACGCATTTTGAAGCACAGAATTT 58.629 34.783 0.00 0.00 32.19 1.82
4327 4427 4.209703 ACGCATTTTGAAGCACAGAATTTG 59.790 37.500 0.00 0.00 32.19 2.32
4328 4428 4.209703 CGCATTTTGAAGCACAGAATTTGT 59.790 37.500 0.00 0.00 41.94 2.83
4329 4429 5.276963 CGCATTTTGAAGCACAGAATTTGTT 60.277 36.000 0.00 0.00 38.16 2.83
4330 4430 6.488817 GCATTTTGAAGCACAGAATTTGTTT 58.511 32.000 0.00 0.00 38.16 2.83
4331 4431 6.968335 GCATTTTGAAGCACAGAATTTGTTTT 59.032 30.769 0.00 0.00 38.16 2.43
4332 4432 7.485595 GCATTTTGAAGCACAGAATTTGTTTTT 59.514 29.630 0.00 0.00 38.16 1.94
4349 4449 0.671251 TTTTTGCCACGCCTTACAGG 59.329 50.000 0.00 0.00 38.80 4.00
4350 4450 0.179015 TTTTGCCACGCCTTACAGGA 60.179 50.000 0.00 0.00 37.67 3.86
4351 4451 0.179015 TTTGCCACGCCTTACAGGAA 60.179 50.000 0.00 0.00 37.67 3.36
4352 4452 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.000 0.00 0.00 37.67 3.01
4353 4453 0.676466 TGCCACGCCTTACAGGAATG 60.676 55.000 0.00 0.00 37.67 2.67
4354 4454 0.676782 GCCACGCCTTACAGGAATGT 60.677 55.000 0.00 0.00 37.67 2.71
4355 4455 1.086696 CCACGCCTTACAGGAATGTG 58.913 55.000 0.00 0.00 37.67 3.21
4356 4456 1.338674 CCACGCCTTACAGGAATGTGA 60.339 52.381 10.25 0.00 37.67 3.58
4357 4457 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
4358 4458 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
4359 4459 3.440173 CACGCCTTACAGGAATGTGATTT 59.560 43.478 0.00 0.00 37.67 2.17
4360 4460 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
4361 4461 3.689161 CGCCTTACAGGAATGTGATTTCA 59.311 43.478 0.00 0.00 37.67 2.69
4362 4462 4.336433 CGCCTTACAGGAATGTGATTTCAT 59.664 41.667 0.00 0.00 37.67 2.57
4363 4463 5.585390 GCCTTACAGGAATGTGATTTCATG 58.415 41.667 0.00 0.00 41.77 3.07
4364 4464 5.357878 GCCTTACAGGAATGTGATTTCATGA 59.642 40.000 5.92 0.00 39.18 3.07
4365 4465 6.040166 GCCTTACAGGAATGTGATTTCATGAT 59.960 38.462 0.00 0.00 39.18 2.45
4366 4466 7.423199 CCTTACAGGAATGTGATTTCATGATG 58.577 38.462 0.00 0.00 39.18 3.07
4367 4467 7.283807 CCTTACAGGAATGTGATTTCATGATGA 59.716 37.037 0.00 0.00 39.18 2.92
4368 4468 8.578448 TTACAGGAATGTGATTTCATGATGAA 57.422 30.769 3.29 3.29 39.18 2.57
4369 4469 7.655521 ACAGGAATGTGATTTCATGATGAAT 57.344 32.000 8.90 0.00 39.18 2.57
4370 4470 8.074613 ACAGGAATGTGATTTCATGATGAATT 57.925 30.769 8.90 5.47 39.18 2.17
4371 4471 8.537016 ACAGGAATGTGATTTCATGATGAATTT 58.463 29.630 8.90 0.00 39.18 1.82
4372 4472 9.378551 CAGGAATGTGATTTCATGATGAATTTT 57.621 29.630 8.90 0.00 39.18 1.82
4373 4473 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
4374 4474 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
4375 4475 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
4376 4476 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
4377 4477 8.024146 TGTGATTTCATGATGAATTTTTGCAG 57.976 30.769 8.90 0.00 36.11 4.41
4378 4478 7.118535 TGTGATTTCATGATGAATTTTTGCAGG 59.881 33.333 8.90 0.00 36.11 4.85
4379 4479 5.866335 TTTCATGATGAATTTTTGCAGGC 57.134 34.783 8.90 0.00 36.11 4.85
4380 4480 4.538746 TCATGATGAATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
4381 4481 4.247258 TCATGATGAATTTTTGCAGGCAC 58.753 39.130 0.00 0.00 0.00 5.01
4382 4482 4.020928 TCATGATGAATTTTTGCAGGCACT 60.021 37.500 0.00 0.00 43.88 4.40
4383 4483 4.339872 TGATGAATTTTTGCAGGCACTT 57.660 36.364 0.00 0.00 34.60 3.16
4384 4484 5.465532 TGATGAATTTTTGCAGGCACTTA 57.534 34.783 0.00 0.00 34.60 2.24
4385 4485 5.472148 TGATGAATTTTTGCAGGCACTTAG 58.528 37.500 0.00 0.00 34.60 2.18
4386 4486 5.243507 TGATGAATTTTTGCAGGCACTTAGA 59.756 36.000 0.00 0.00 34.60 2.10
4387 4487 5.528043 TGAATTTTTGCAGGCACTTAGAA 57.472 34.783 0.00 0.00 34.60 2.10
4388 4488 5.288804 TGAATTTTTGCAGGCACTTAGAAC 58.711 37.500 0.00 0.00 34.60 3.01
4389 4489 5.068987 TGAATTTTTGCAGGCACTTAGAACT 59.931 36.000 0.00 0.00 34.60 3.01
4390 4490 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
4391 4491 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
4392 4492 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
4393 4493 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
4394 4494 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
4395 4495 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
4396 4496 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
4397 4497 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
4398 4498 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
4399 4499 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
4400 4500 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
4401 4501 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
4402 4502 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
4403 4503 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
4404 4504 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
4405 4505 9.573133 CACTTAGAACTTTTGTCAATGTTTCTT 57.427 29.630 7.85 1.84 31.96 2.52
4459 4559 6.761731 TTTTTGATTTTACTGTTCATGCGG 57.238 33.333 0.00 0.00 0.00 5.69
4460 4560 4.433186 TTGATTTTACTGTTCATGCGGG 57.567 40.909 0.00 0.00 0.00 6.13
4461 4561 3.680490 TGATTTTACTGTTCATGCGGGA 58.320 40.909 0.00 0.00 0.00 5.14
4462 4562 3.689161 TGATTTTACTGTTCATGCGGGAG 59.311 43.478 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 126 4.103103 CTCGTGCTCTGCCGACGA 62.103 66.667 0.00 0.00 39.68 4.20
137 163 2.577112 CAGCGCGTACCGAGAGTG 60.577 66.667 8.43 0.00 40.02 3.51
360 386 3.462982 AGCATCATAACGCCGTGATTAA 58.537 40.909 0.00 0.00 32.98 1.40
363 389 1.502231 GAGCATCATAACGCCGTGAT 58.498 50.000 0.00 0.00 35.54 3.06
388 414 2.361992 TCGGGCAGCCGAAGACTA 60.362 61.111 5.00 0.00 39.34 2.59
395 421 0.808755 AAAAATTAGTCGGGCAGCCG 59.191 50.000 5.00 0.62 0.00 5.52
421 453 2.046313 GCGCAACATTCAGACAACAAG 58.954 47.619 0.30 0.00 0.00 3.16
429 461 5.034554 TCTCTTTTTAGCGCAACATTCAG 57.965 39.130 11.47 0.00 0.00 3.02
455 489 8.628882 AAATACAGTTCAAAGTTAACAGCAAC 57.371 30.769 8.61 5.19 0.00 4.17
615 658 3.739300 CAGCATTTCAGCAGAAAACTTGG 59.261 43.478 8.45 0.00 46.06 3.61
661 704 4.768145 TCTTAGTCGCAAAAATTGACACG 58.232 39.130 0.00 0.00 35.09 4.49
676 719 6.599638 AGGTAAACATGAAGGCATTCTTAGTC 59.400 38.462 12.92 0.00 35.50 2.59
801 844 4.522405 TCATAAGCTTGCAAAAAGGCTACA 59.478 37.500 9.86 3.80 34.40 2.74
825 868 5.416952 GGAGGATAAGCCATGGATTAACATG 59.583 44.000 25.28 0.00 46.02 3.21
852 895 6.036191 GGCGAGTAAAACAGGAAGAAGATAAG 59.964 42.308 0.00 0.00 0.00 1.73
1208 1260 7.099764 GTCCTTCTGTTGAGATATGACAAGAA 58.900 38.462 0.00 0.00 0.00 2.52
1305 1357 4.747623 GCATGGGGATCTTCATATGTGACA 60.748 45.833 1.90 0.00 33.11 3.58
1482 1534 1.412217 CCTCTACCTCTGCCTGATCCA 60.412 57.143 0.00 0.00 0.00 3.41
1591 1643 5.701290 ACCATACTAGTCAGCAACAAAAGAC 59.299 40.000 0.00 0.00 0.00 3.01
1905 1957 5.635700 GTGCAAGGACAAAGTAGAGACTAAG 59.364 44.000 0.00 0.00 33.58 2.18
1911 1963 3.748568 GGAAGTGCAAGGACAAAGTAGAG 59.251 47.826 0.00 0.00 0.00 2.43
1926 1978 1.834263 AGGGAGTACAGATGGAAGTGC 59.166 52.381 0.00 0.00 0.00 4.40
1936 1988 1.952621 TTGGGAAGGAGGGAGTACAG 58.047 55.000 0.00 0.00 0.00 2.74
2060 2116 5.690865 TGTCCTAAGTCAAATGACCAAGTT 58.309 37.500 9.84 1.15 45.85 2.66
2084 2144 8.669946 TCATGAAATATAAGGCACATAAACGA 57.330 30.769 0.00 0.00 0.00 3.85
2144 2204 3.627395 TTGTAAGATGGGTACAGGCAG 57.373 47.619 0.00 0.00 33.19 4.85
2146 2206 5.914898 AAAATTGTAAGATGGGTACAGGC 57.085 39.130 0.00 0.00 33.19 4.85
2174 2234 1.265905 CCACCAAAAACAGCGACCTAC 59.734 52.381 0.00 0.00 0.00 3.18
2176 2236 1.734388 GCCACCAAAAACAGCGACCT 61.734 55.000 0.00 0.00 0.00 3.85
2180 2240 1.261089 CATTTGCCACCAAAAACAGCG 59.739 47.619 0.00 0.00 43.58 5.18
2185 2245 7.487822 TCCTAATATCATTTGCCACCAAAAA 57.512 32.000 0.00 0.00 43.58 1.94
2203 2263 8.659527 TCATACAACATGTGATACCATCCTAAT 58.340 33.333 0.00 0.00 0.00 1.73
2288 2349 7.608761 TCCTTGCGAGGTTTATAAAATACTTGT 59.391 33.333 19.96 0.00 43.97 3.16
2302 2363 0.678048 GGCATCTTCCTTGCGAGGTT 60.678 55.000 19.96 1.07 43.97 3.50
2315 2376 4.917906 AAAGACTACAAAGAGGGCATCT 57.082 40.909 0.00 0.00 41.27 2.90
2319 2380 3.502595 GTCCAAAAGACTACAAAGAGGGC 59.497 47.826 0.00 0.00 42.69 5.19
2368 2436 7.307989 CCTTATAGAACAGGACAAAACAGTGTG 60.308 40.741 0.00 0.00 30.81 3.82
2372 2440 5.940470 AGCCTTATAGAACAGGACAAAACAG 59.060 40.000 0.00 0.00 30.81 3.16
2381 2449 6.656632 TCAGATACAGCCTTATAGAACAGG 57.343 41.667 0.00 0.00 0.00 4.00
2552 2621 6.760770 GGAAATTGAATTCACAACAGGTTCAA 59.239 34.615 7.89 0.00 41.37 2.69
2577 2646 4.925786 GCACGATGCGACTTAACG 57.074 55.556 0.00 0.00 31.71 3.18
2638 2707 1.078709 CTGTGGGTGCGTCATAACAG 58.921 55.000 0.00 0.00 0.00 3.16
2657 2726 1.679977 ATCACATGTGGCACCCAGC 60.680 57.895 25.16 0.00 44.65 4.85
2668 2737 3.441222 TGCTTAGCTTTGACCATCACATG 59.559 43.478 5.60 0.00 0.00 3.21
2673 2742 2.363683 AGCTGCTTAGCTTTGACCATC 58.636 47.619 5.60 0.00 43.52 3.51
2700 2769 2.380064 ATCAGAAACAAAGCCACCCA 57.620 45.000 0.00 0.00 0.00 4.51
2701 2770 3.826729 AGTAATCAGAAACAAAGCCACCC 59.173 43.478 0.00 0.00 0.00 4.61
2702 2771 5.453567 AAGTAATCAGAAACAAAGCCACC 57.546 39.130 0.00 0.00 0.00 4.61
2703 2772 6.966021 TGTAAGTAATCAGAAACAAAGCCAC 58.034 36.000 0.00 0.00 0.00 5.01
2704 2773 7.759489 ATGTAAGTAATCAGAAACAAAGCCA 57.241 32.000 0.00 0.00 0.00 4.75
2705 2774 8.296713 TCAATGTAAGTAATCAGAAACAAAGCC 58.703 33.333 0.00 0.00 0.00 4.35
2706 2775 9.677567 TTCAATGTAAGTAATCAGAAACAAAGC 57.322 29.630 0.00 0.00 0.00 3.51
2709 2778 9.349713 ACCTTCAATGTAAGTAATCAGAAACAA 57.650 29.630 0.00 0.00 0.00 2.83
2710 2779 8.918202 ACCTTCAATGTAAGTAATCAGAAACA 57.082 30.769 0.00 0.00 0.00 2.83
2729 2798 7.604549 TCGTAAGACACAAATATGTACCTTCA 58.395 34.615 0.00 0.00 45.01 3.02
2905 2974 5.913137 TTCACATGGAAACCCAATATCAC 57.087 39.130 0.00 0.00 37.24 3.06
3116 3188 2.466846 ACGGAACTAACACACGACTTG 58.533 47.619 0.00 0.00 0.00 3.16
3154 3231 8.478877 ACTCTAGTCCCAGTATTACAGAATTTG 58.521 37.037 0.00 0.00 0.00 2.32
3213 3290 3.490348 ACAGTAGCAAAATCACCAGCTT 58.510 40.909 0.00 0.00 38.47 3.74
3215 3292 3.375299 CCTACAGTAGCAAAATCACCAGC 59.625 47.826 1.50 0.00 0.00 4.85
3276 3353 2.569218 ATCGTAGTCGTCCCTGCCCT 62.569 60.000 0.00 0.00 38.33 5.19
3485 3562 1.680735 TGAAAAGTGGCGAGCAAACAT 59.319 42.857 0.00 0.00 0.00 2.71
3620 3701 4.294347 TGTACCATATGATCTGACCACCA 58.706 43.478 3.65 0.00 0.00 4.17
3732 3813 1.671261 GCTCGTCTTGCATCAGACACT 60.671 52.381 16.70 0.00 43.11 3.55
3778 3859 7.491372 CGGAGAAAAGCAAACATAGTAGACATA 59.509 37.037 0.00 0.00 0.00 2.29
3856 3937 1.985447 GACGCCTGCACCATGATGTG 61.985 60.000 0.00 0.00 39.29 3.21
3944 4044 3.705072 TGTCCATCAATGCATTTATGGCA 59.295 39.130 33.81 30.39 46.66 4.92
3945 4045 4.053295 GTGTCCATCAATGCATTTATGGC 58.947 43.478 33.81 28.90 39.01 4.40
3964 4064 8.143673 ACAATATGATAGCTGATATGGAGTGT 57.856 34.615 0.00 0.00 0.00 3.55
3971 4071 7.776107 ACACGCTACAATATGATAGCTGATAT 58.224 34.615 13.75 0.00 41.42 1.63
3972 4072 7.158099 ACACGCTACAATATGATAGCTGATA 57.842 36.000 13.75 0.00 41.42 2.15
3984 4084 4.994907 ATCACCAGTACACGCTACAATA 57.005 40.909 0.00 0.00 0.00 1.90
4025 4125 9.813826 CCCTGATATTCCAGAAAATTTACCTAT 57.186 33.333 0.00 0.00 36.29 2.57
4034 4134 3.644966 ACGCCCTGATATTCCAGAAAA 57.355 42.857 0.00 0.00 36.29 2.29
4053 4153 1.604604 TTGTCACTAAGGCCAGCAAC 58.395 50.000 5.01 0.00 0.00 4.17
4054 4154 2.229792 CTTTGTCACTAAGGCCAGCAA 58.770 47.619 5.01 0.00 0.00 3.91
4055 4155 1.545428 CCTTTGTCACTAAGGCCAGCA 60.545 52.381 5.01 0.00 36.08 4.41
4056 4156 1.168714 CCTTTGTCACTAAGGCCAGC 58.831 55.000 5.01 0.00 36.08 4.85
4057 4157 1.614317 CCCCTTTGTCACTAAGGCCAG 60.614 57.143 12.24 0.00 40.70 4.85
4058 4158 0.404040 CCCCTTTGTCACTAAGGCCA 59.596 55.000 12.24 0.00 40.70 5.36
4059 4159 0.323451 CCCCCTTTGTCACTAAGGCC 60.323 60.000 12.24 0.00 40.70 5.19
4060 4160 0.404426 ACCCCCTTTGTCACTAAGGC 59.596 55.000 12.24 0.00 40.70 4.35
4061 4161 1.702957 TCACCCCCTTTGTCACTAAGG 59.297 52.381 10.85 10.85 41.51 2.69
4062 4162 3.610911 GATCACCCCCTTTGTCACTAAG 58.389 50.000 0.00 0.00 0.00 2.18
4063 4163 2.307686 GGATCACCCCCTTTGTCACTAA 59.692 50.000 0.00 0.00 0.00 2.24
4064 4164 1.913419 GGATCACCCCCTTTGTCACTA 59.087 52.381 0.00 0.00 0.00 2.74
4065 4165 0.698818 GGATCACCCCCTTTGTCACT 59.301 55.000 0.00 0.00 0.00 3.41
4066 4166 0.698818 AGGATCACCCCCTTTGTCAC 59.301 55.000 0.00 0.00 36.73 3.67
4067 4167 2.196595 CTAGGATCACCCCCTTTGTCA 58.803 52.381 0.00 0.00 35.30 3.58
4068 4168 1.490910 CCTAGGATCACCCCCTTTGTC 59.509 57.143 1.05 0.00 35.30 3.18
4069 4169 1.082194 TCCTAGGATCACCCCCTTTGT 59.918 52.381 7.62 0.00 35.30 2.83
4070 4170 1.893315 TCCTAGGATCACCCCCTTTG 58.107 55.000 7.62 0.00 35.30 2.77
4071 4171 2.918774 ATCCTAGGATCACCCCCTTT 57.081 50.000 19.18 0.00 35.30 3.11
4081 4181 7.525158 TTTCTTTTTACCCTGATCCTAGGAT 57.475 36.000 24.78 24.78 40.42 3.24
4082 4182 6.963117 TTTCTTTTTACCCTGATCCTAGGA 57.037 37.500 15.46 15.46 40.42 2.94
4083 4183 8.595362 ATTTTTCTTTTTACCCTGATCCTAGG 57.405 34.615 0.82 0.82 37.59 3.02
4099 4199 9.292846 GCGTCCGGTATTTATTTATTTTTCTTT 57.707 29.630 0.00 0.00 0.00 2.52
4100 4200 7.641020 CGCGTCCGGTATTTATTTATTTTTCTT 59.359 33.333 0.00 0.00 0.00 2.52
4101 4201 7.127686 CGCGTCCGGTATTTATTTATTTTTCT 58.872 34.615 0.00 0.00 0.00 2.52
4102 4202 7.299053 CGCGTCCGGTATTTATTTATTTTTC 57.701 36.000 0.00 0.00 0.00 2.29
4119 4219 3.330853 GCAGATTAGCCGCGTCCG 61.331 66.667 4.92 0.00 0.00 4.79
4120 4220 2.202878 TGCAGATTAGCCGCGTCC 60.203 61.111 4.92 0.00 0.00 4.79
4121 4221 2.526120 GGTGCAGATTAGCCGCGTC 61.526 63.158 4.92 0.00 0.00 5.19
4122 4222 2.511600 GGTGCAGATTAGCCGCGT 60.512 61.111 4.92 0.00 0.00 6.01
4123 4223 3.272334 GGGTGCAGATTAGCCGCG 61.272 66.667 0.00 0.00 0.00 6.46
4126 4226 1.889573 GCTCGGGTGCAGATTAGCC 60.890 63.158 0.00 0.00 0.00 3.93
4127 4227 0.878086 GAGCTCGGGTGCAGATTAGC 60.878 60.000 0.00 0.00 34.99 3.09
4128 4228 0.596083 CGAGCTCGGGTGCAGATTAG 60.596 60.000 28.40 0.00 35.37 1.73
4129 4229 1.437573 CGAGCTCGGGTGCAGATTA 59.562 57.895 28.40 0.00 35.37 1.75
4130 4230 2.185350 CGAGCTCGGGTGCAGATT 59.815 61.111 28.40 0.00 35.37 2.40
4140 4240 0.242825 TTACTGTTCACCCGAGCTCG 59.757 55.000 29.06 29.06 39.44 5.03
4141 4241 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
4142 4242 2.922740 TTTTACTGTTCACCCGAGCT 57.077 45.000 0.00 0.00 0.00 4.09
4143 4243 2.093783 CGATTTTACTGTTCACCCGAGC 59.906 50.000 0.00 0.00 0.00 5.03
4144 4244 3.581755 TCGATTTTACTGTTCACCCGAG 58.418 45.455 0.00 0.00 0.00 4.63
4145 4245 3.663995 TCGATTTTACTGTTCACCCGA 57.336 42.857 0.00 0.00 0.00 5.14
4146 4246 4.735662 TTTCGATTTTACTGTTCACCCG 57.264 40.909 0.00 0.00 0.00 5.28
4147 4247 9.634163 AATTTATTTCGATTTTACTGTTCACCC 57.366 29.630 0.00 0.00 0.00 4.61
4191 4291 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
4192 4292 9.139174 GAACTTTTGTCAATGTTTCTCTCAAAA 57.861 29.630 6.10 0.00 31.96 2.44
4193 4293 8.522830 AGAACTTTTGTCAATGTTTCTCTCAAA 58.477 29.630 6.10 0.00 31.96 2.69
4194 4294 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
4195 4295 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
4196 4296 9.657121 CTTAGAACTTTTGTCAATGTTTCTCTC 57.343 33.333 6.42 0.00 31.96 3.20
4197 4297 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
4198 4298 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
4199 4299 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
4200 4300 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
4201 4301 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
4202 4302 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
4203 4303 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
4204 4304 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
4205 4305 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
4206 4306 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
4207 4307 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
4208 4308 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
4209 4309 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
4210 4310 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
4211 4311 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
4212 4312 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
4213 4313 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
4214 4314 5.532557 GAATTTTTGCAGGCACTTAGAACT 58.467 37.500 0.00 0.00 34.60 3.01
4215 4315 4.382754 CGAATTTTTGCAGGCACTTAGAAC 59.617 41.667 0.00 0.00 34.60 3.01
4216 4316 4.037446 ACGAATTTTTGCAGGCACTTAGAA 59.963 37.500 0.00 0.00 34.60 2.10
4217 4317 3.568007 ACGAATTTTTGCAGGCACTTAGA 59.432 39.130 0.00 0.00 34.60 2.10
4218 4318 3.900941 ACGAATTTTTGCAGGCACTTAG 58.099 40.909 0.00 0.00 34.60 2.18
4219 4319 3.316588 TGACGAATTTTTGCAGGCACTTA 59.683 39.130 0.00 0.00 34.60 2.24
4220 4320 2.100584 TGACGAATTTTTGCAGGCACTT 59.899 40.909 0.00 0.00 34.60 3.16
4221 4321 1.680735 TGACGAATTTTTGCAGGCACT 59.319 42.857 0.00 0.00 43.88 4.40
4222 4322 2.132740 TGACGAATTTTTGCAGGCAC 57.867 45.000 0.00 0.00 0.00 5.01
4223 4323 2.295629 TCATGACGAATTTTTGCAGGCA 59.704 40.909 0.00 0.00 0.00 4.75
4224 4324 2.945278 TCATGACGAATTTTTGCAGGC 58.055 42.857 0.00 0.00 0.00 4.85
4225 4325 5.634439 TGATTTCATGACGAATTTTTGCAGG 59.366 36.000 0.00 0.00 32.32 4.85
4226 4326 6.144241 TGTGATTTCATGACGAATTTTTGCAG 59.856 34.615 0.00 0.00 32.32 4.41
4227 4327 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
4228 4328 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
4229 4329 8.164153 GGAATGTGATTTCATGACGAATTTTTG 58.836 33.333 0.00 0.00 32.32 2.44
4230 4330 8.090214 AGGAATGTGATTTCATGACGAATTTTT 58.910 29.630 0.00 0.00 32.32 1.94
4231 4331 7.605449 AGGAATGTGATTTCATGACGAATTTT 58.395 30.769 0.00 0.00 32.32 1.82
4232 4332 7.161773 AGGAATGTGATTTCATGACGAATTT 57.838 32.000 0.00 0.00 32.32 1.82
4233 4333 6.764308 AGGAATGTGATTTCATGACGAATT 57.236 33.333 0.00 0.00 32.32 2.17
4234 4334 7.275183 TCTAGGAATGTGATTTCATGACGAAT 58.725 34.615 0.00 0.00 32.32 3.34
4235 4335 6.639563 TCTAGGAATGTGATTTCATGACGAA 58.360 36.000 0.00 0.00 0.00 3.85
4236 4336 6.220726 TCTAGGAATGTGATTTCATGACGA 57.779 37.500 0.00 0.00 0.00 4.20
4237 4337 6.018425 CCTTCTAGGAATGTGATTTCATGACG 60.018 42.308 0.00 0.00 37.67 4.35
4238 4338 6.238593 GCCTTCTAGGAATGTGATTTCATGAC 60.239 42.308 0.00 0.00 37.67 3.06
4239 4339 5.824624 GCCTTCTAGGAATGTGATTTCATGA 59.175 40.000 0.00 0.00 37.67 3.07
4240 4340 5.277683 CGCCTTCTAGGAATGTGATTTCATG 60.278 44.000 0.00 0.00 37.67 3.07
4241 4341 4.818546 CGCCTTCTAGGAATGTGATTTCAT 59.181 41.667 0.00 0.00 37.67 2.57
4242 4342 4.191544 CGCCTTCTAGGAATGTGATTTCA 58.808 43.478 0.00 0.00 37.67 2.69
4243 4343 4.034510 CACGCCTTCTAGGAATGTGATTTC 59.965 45.833 0.00 0.00 37.67 2.17
4244 4344 3.941483 CACGCCTTCTAGGAATGTGATTT 59.059 43.478 0.00 0.00 37.67 2.17
4245 4345 3.535561 CACGCCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 37.67 2.57
4246 4346 2.158900 CCACGCCTTCTAGGAATGTGAT 60.159 50.000 12.05 0.00 37.67 3.06
4247 4347 1.207089 CCACGCCTTCTAGGAATGTGA 59.793 52.381 12.05 0.00 37.67 3.58
4248 4348 1.656652 CCACGCCTTCTAGGAATGTG 58.343 55.000 0.00 2.20 37.67 3.21
4249 4349 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.000 0.00 0.00 37.67 2.71
4250 4350 0.107703 TGCCACGCCTTCTAGGAATG 60.108 55.000 0.00 0.00 37.67 2.67
4251 4351 0.618458 TTGCCACGCCTTCTAGGAAT 59.382 50.000 0.00 0.00 37.67 3.01
4252 4352 0.398696 TTTGCCACGCCTTCTAGGAA 59.601 50.000 0.00 0.00 37.67 3.36
4253 4353 0.398696 TTTTGCCACGCCTTCTAGGA 59.601 50.000 0.00 0.00 37.67 2.94
4254 4354 1.243902 TTTTTGCCACGCCTTCTAGG 58.756 50.000 0.00 0.00 38.80 3.02
4281 4381 8.325282 GCGTTTGAAAGTAGCTTTTATTGTTTT 58.675 29.630 0.00 0.00 33.49 2.43
4282 4382 7.489757 TGCGTTTGAAAGTAGCTTTTATTGTTT 59.510 29.630 0.00 0.00 33.49 2.83
4283 4383 6.975772 TGCGTTTGAAAGTAGCTTTTATTGTT 59.024 30.769 0.00 0.00 33.49 2.83
4284 4384 6.500041 TGCGTTTGAAAGTAGCTTTTATTGT 58.500 32.000 0.00 0.00 33.49 2.71
4285 4385 6.984740 TGCGTTTGAAAGTAGCTTTTATTG 57.015 33.333 0.00 0.00 33.49 1.90
4286 4386 8.587952 AAATGCGTTTGAAAGTAGCTTTTATT 57.412 26.923 2.32 0.00 33.49 1.40
4287 4387 8.587952 AAAATGCGTTTGAAAGTAGCTTTTAT 57.412 26.923 4.29 4.11 35.24 1.40
4288 4388 7.995463 AAAATGCGTTTGAAAGTAGCTTTTA 57.005 28.000 4.29 0.00 35.24 1.52
4289 4389 6.902224 AAAATGCGTTTGAAAGTAGCTTTT 57.098 29.167 4.29 0.00 36.97 2.27
4301 4401 3.114809 TCTGTGCTTCAAAATGCGTTTG 58.885 40.909 4.29 5.51 46.86 2.93
4302 4402 3.435105 TCTGTGCTTCAAAATGCGTTT 57.565 38.095 0.00 0.00 0.00 3.60
4303 4403 3.435105 TTCTGTGCTTCAAAATGCGTT 57.565 38.095 0.00 0.00 0.00 4.84
4304 4404 3.648339 ATTCTGTGCTTCAAAATGCGT 57.352 38.095 0.00 0.00 0.00 5.24
4305 4405 4.209703 ACAAATTCTGTGCTTCAAAATGCG 59.790 37.500 0.00 0.00 36.69 4.73
4306 4406 5.662211 ACAAATTCTGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 36.69 3.56
4307 4407 8.898983 AAAAACAAATTCTGTGCTTCAAAATG 57.101 26.923 0.00 0.00 38.67 2.32
4342 4442 8.217131 TCATCATGAAATCACATTCCTGTAAG 57.783 34.615 0.00 0.00 33.14 2.34
4343 4443 8.578448 TTCATCATGAAATCACATTCCTGTAA 57.422 30.769 0.00 0.00 32.71 2.41
4344 4444 8.756486 ATTCATCATGAAATCACATTCCTGTA 57.244 30.769 3.63 0.00 40.12 2.74
4345 4445 7.655521 ATTCATCATGAAATCACATTCCTGT 57.344 32.000 3.63 0.00 40.12 4.00
4346 4446 8.942338 AAATTCATCATGAAATCACATTCCTG 57.058 30.769 3.63 0.00 40.12 3.86
4347 4447 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
4348 4448 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
4349 4449 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
4350 4450 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
4351 4451 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
4352 4452 7.118535 CCTGCAAAAATTCATCATGAAATCACA 59.881 33.333 3.63 0.00 40.12 3.58
4353 4453 7.461107 CCTGCAAAAATTCATCATGAAATCAC 58.539 34.615 3.63 0.00 40.12 3.06
4354 4454 6.092944 GCCTGCAAAAATTCATCATGAAATCA 59.907 34.615 3.63 0.00 40.12 2.57
4355 4455 6.092944 TGCCTGCAAAAATTCATCATGAAATC 59.907 34.615 3.63 0.00 40.12 2.17
4356 4456 5.941058 TGCCTGCAAAAATTCATCATGAAAT 59.059 32.000 3.63 0.00 40.12 2.17
4357 4457 5.179742 GTGCCTGCAAAAATTCATCATGAAA 59.820 36.000 3.63 0.00 40.12 2.69
4358 4458 4.691685 GTGCCTGCAAAAATTCATCATGAA 59.308 37.500 1.59 1.59 41.09 2.57
4359 4459 4.020928 AGTGCCTGCAAAAATTCATCATGA 60.021 37.500 0.00 0.00 0.00 3.07
4360 4460 4.250464 AGTGCCTGCAAAAATTCATCATG 58.750 39.130 0.00 0.00 0.00 3.07
4361 4461 4.546829 AGTGCCTGCAAAAATTCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
4362 4462 4.339872 AAGTGCCTGCAAAAATTCATCA 57.660 36.364 0.00 0.00 0.00 3.07
4363 4463 5.713025 TCTAAGTGCCTGCAAAAATTCATC 58.287 37.500 0.00 0.00 0.00 2.92
4364 4464 5.726980 TCTAAGTGCCTGCAAAAATTCAT 57.273 34.783 0.00 0.00 0.00 2.57
4365 4465 5.068987 AGTTCTAAGTGCCTGCAAAAATTCA 59.931 36.000 0.00 0.00 0.00 2.57
4366 4466 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
4367 4467 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
4368 4468 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
4369 4469 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
4370 4470 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
4371 4471 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
4372 4472 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
4373 4473 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
4374 4474 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
4375 4475 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
4376 4476 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
4377 4477 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
4378 4478 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
4379 4479 9.573133 AAGAAACATTGACAAAAGTTCTAAGTG 57.427 29.630 9.09 0.00 0.00 3.16
4436 4536 5.694006 CCCGCATGAACAGTAAAATCAAAAA 59.306 36.000 0.00 0.00 0.00 1.94
4437 4537 5.010112 TCCCGCATGAACAGTAAAATCAAAA 59.990 36.000 0.00 0.00 0.00 2.44
4438 4538 4.520874 TCCCGCATGAACAGTAAAATCAAA 59.479 37.500 0.00 0.00 0.00 2.69
4439 4539 4.075682 TCCCGCATGAACAGTAAAATCAA 58.924 39.130 0.00 0.00 0.00 2.57
4440 4540 3.680490 TCCCGCATGAACAGTAAAATCA 58.320 40.909 0.00 0.00 0.00 2.57
4441 4541 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
4442 4542 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
4443 4543 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
4444 4544 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
4445 4545 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
4446 4546 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
4447 4547 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.