Multiple sequence alignment - TraesCS5D01G182800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G182800 chr5D 100.000 7110 0 0 1 7110 284116866 284109757 0.000000e+00 13130.0
1 TraesCS5D01G182800 chr5D 94.314 299 15 2 67 365 371008517 371008813 2.340000e-124 457.0
2 TraesCS5D01G182800 chr5B 93.262 3369 126 32 3740 7086 321974705 321971416 0.000000e+00 4870.0
3 TraesCS5D01G182800 chr5B 93.311 1495 54 26 2086 3554 321976612 321975138 0.000000e+00 2165.0
4 TraesCS5D01G182800 chr5B 89.889 1078 46 28 365 1413 321978317 321977274 0.000000e+00 1328.0
5 TraesCS5D01G182800 chr5B 90.484 641 35 7 1444 2083 321977281 321976666 0.000000e+00 822.0
6 TraesCS5D01G182800 chr5B 97.143 175 5 0 3562 3736 321974931 321974757 5.390000e-76 296.0
7 TraesCS5D01G182800 chr5A 91.730 3277 129 63 365 3595 375848656 375845476 0.000000e+00 4420.0
8 TraesCS5D01G182800 chr5A 94.511 2751 91 25 4377 7110 375844366 375841659 0.000000e+00 4189.0
9 TraesCS5D01G182800 chr5A 94.595 296 14 2 68 362 394486394 394486688 2.340000e-124 457.0
10 TraesCS5D01G182800 chr5A 93.704 270 17 0 3594 3863 375845442 375845173 8.590000e-109 405.0
11 TraesCS5D01G182800 chr5A 81.687 415 21 16 3965 4375 375844836 375844473 1.940000e-75 294.0
12 TraesCS5D01G182800 chr2A 95.380 303 12 2 66 367 689530131 689530432 1.390000e-131 481.0
13 TraesCS5D01G182800 chr1D 95.593 295 12 1 70 364 377577484 377577777 8.350000e-129 472.0
14 TraesCS5D01G182800 chr1D 95.548 292 12 1 72 363 410600577 410600867 3.880000e-127 466.0
15 TraesCS5D01G182800 chr7D 94.898 294 13 2 71 364 432695198 432694907 6.500000e-125 459.0
16 TraesCS5D01G182800 chr7D 94.881 293 14 1 71 363 207910940 207910649 2.340000e-124 457.0
17 TraesCS5D01G182800 chr2D 94.613 297 14 2 70 365 77126963 77126668 6.500000e-125 459.0
18 TraesCS5D01G182800 chr2D 94.000 300 15 3 66 364 593005752 593005455 1.090000e-122 451.0
19 TraesCS5D01G182800 chr2D 85.915 71 8 2 6716 6786 17140114 17140046 2.750000e-09 75.0
20 TraesCS5D01G182800 chr6A 87.097 93 11 1 6909 7000 68559154 68559246 3.510000e-18 104.0
21 TraesCS5D01G182800 chr6A 82.796 93 15 1 6909 7000 68567292 68567384 1.640000e-11 82.4
22 TraesCS5D01G182800 chr6A 94.444 36 2 0 6722 6757 24833070 24833105 1.000000e-03 56.5
23 TraesCS5D01G182800 chr6B 84.000 100 13 3 6716 6815 648074917 648074821 7.590000e-15 93.5
24 TraesCS5D01G182800 chr2B 91.228 57 4 1 6722 6778 150708796 150708741 7.650000e-10 76.8
25 TraesCS5D01G182800 chr2B 90.909 55 5 0 6716 6770 384045473 384045419 2.750000e-09 75.0
26 TraesCS5D01G182800 chr7B 93.617 47 2 1 6716 6762 570312840 570312795 1.280000e-07 69.4
27 TraesCS5D01G182800 chr7B 100.000 28 0 0 6907 6934 401553906 401553933 1.300000e-02 52.8
28 TraesCS5D01G182800 chr6D 91.667 48 4 0 6716 6763 429827545 429827498 4.600000e-07 67.6
29 TraesCS5D01G182800 chr4A 100.000 28 0 0 6953 6980 722842973 722843000 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G182800 chr5D 284109757 284116866 7109 True 13130.0 13130 100.0000 1 7110 1 chr5D.!!$R1 7109
1 TraesCS5D01G182800 chr5B 321971416 321978317 6901 True 1896.2 4870 92.8178 365 7086 5 chr5B.!!$R1 6721
2 TraesCS5D01G182800 chr5A 375841659 375848656 6997 True 2327.0 4420 90.4080 365 7110 4 chr5A.!!$R1 6745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.034186 TGGCAGCGGATTTCAGGAAT 60.034 50.000 0.0 0.00 0.00 3.01 F
1054 1077 0.035176 GGCGTTTACACCACCACCTA 59.965 55.000 0.0 0.00 0.00 3.08 F
1400 1440 1.202639 CCTGGTTTGGGGTGCTTTTTC 60.203 52.381 0.0 0.00 0.00 2.29 F
1575 1628 1.551883 AGGATTGTTGCAAATGCCTCC 59.448 47.619 0.0 3.73 41.18 4.30 F
2995 3118 0.447801 GTGATGTTAGGTGCGCAAGG 59.552 55.000 14.0 0.00 38.28 3.61 F
3142 3272 1.728971 CTTCTGAGGTTAGCTGTTGCG 59.271 52.381 0.0 0.00 45.42 4.85 F
4336 5004 0.527565 GAAACATTCGCTGGGCACAT 59.472 50.000 0.0 0.00 0.00 3.21 F
5113 5900 0.107066 ATGTTGATCCATGCCTGCGA 60.107 50.000 0.0 0.00 0.00 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1498 0.243907 GCCTGCTTACTGACGTGAGA 59.756 55.000 9.65 0.0 0.00 3.27 R
2215 2327 0.521291 GCTGAAACATTAGCACCGCA 59.479 50.000 0.00 0.0 39.67 5.69 R
2989 3112 1.308998 GTGATATTCCACCCCTTGCG 58.691 55.000 0.00 0.0 0.00 4.85 R
3495 3641 2.930040 GTGCACAGTAACGACATATGCT 59.070 45.455 13.17 0.0 32.81 3.79 R
3857 4290 1.376942 CAAGCCTCACAGGGAGCTG 60.377 63.158 0.00 0.0 42.62 4.24 R
5113 5900 0.680061 GAGACGGGATAAGGGCGAAT 59.320 55.000 0.00 0.0 0.00 3.34 R
5422 6209 0.242017 GAGTTGCAGTGGTGGCATTC 59.758 55.000 0.00 0.0 41.58 2.67 R
6510 7302 0.108585 ACACACTGAAACATCGGCCT 59.891 50.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.992643 GCACATGCATAGTCATCTCTCT 58.007 45.455 0.00 0.00 41.59 3.10
25 26 3.741856 GCACATGCATAGTCATCTCTCTG 59.258 47.826 0.00 0.00 41.59 3.35
26 27 4.501058 GCACATGCATAGTCATCTCTCTGA 60.501 45.833 0.00 0.00 41.59 3.27
27 28 5.598769 CACATGCATAGTCATCTCTCTGAA 58.401 41.667 0.00 0.00 0.00 3.02
28 29 6.224584 CACATGCATAGTCATCTCTCTGAAT 58.775 40.000 0.00 0.00 0.00 2.57
29 30 6.146347 CACATGCATAGTCATCTCTCTGAATG 59.854 42.308 0.00 0.00 0.00 2.67
30 31 4.629092 TGCATAGTCATCTCTCTGAATGC 58.371 43.478 0.00 0.00 38.77 3.56
31 32 4.100498 TGCATAGTCATCTCTCTGAATGCA 59.900 41.667 8.56 8.56 42.64 3.96
32 33 4.448395 GCATAGTCATCTCTCTGAATGCAC 59.552 45.833 0.00 0.00 38.43 4.57
33 34 3.162202 AGTCATCTCTCTGAATGCACG 57.838 47.619 0.00 0.00 0.00 5.34
34 35 1.592081 GTCATCTCTCTGAATGCACGC 59.408 52.381 0.00 0.00 0.00 5.34
35 36 1.205417 TCATCTCTCTGAATGCACGCA 59.795 47.619 0.00 0.00 0.00 5.24
36 37 2.159000 TCATCTCTCTGAATGCACGCAT 60.159 45.455 0.00 0.00 38.46 4.73
37 38 1.648504 TCTCTCTGAATGCACGCATG 58.351 50.000 5.06 0.00 36.68 4.06
50 51 3.466712 CACGCATGCATAATCCATCTC 57.533 47.619 19.57 0.00 0.00 2.75
51 52 3.072211 CACGCATGCATAATCCATCTCT 58.928 45.455 19.57 0.00 0.00 3.10
52 53 4.248058 CACGCATGCATAATCCATCTCTA 58.752 43.478 19.57 0.00 0.00 2.43
53 54 4.092529 CACGCATGCATAATCCATCTCTAC 59.907 45.833 19.57 0.00 0.00 2.59
54 55 4.248058 CGCATGCATAATCCATCTCTACA 58.752 43.478 19.57 0.00 0.00 2.74
55 56 4.092529 CGCATGCATAATCCATCTCTACAC 59.907 45.833 19.57 0.00 0.00 2.90
56 57 4.394300 GCATGCATAATCCATCTCTACACC 59.606 45.833 14.21 0.00 0.00 4.16
57 58 5.802465 CATGCATAATCCATCTCTACACCT 58.198 41.667 0.00 0.00 0.00 4.00
58 59 5.894298 TGCATAATCCATCTCTACACCTT 57.106 39.130 0.00 0.00 0.00 3.50
59 60 5.858381 TGCATAATCCATCTCTACACCTTC 58.142 41.667 0.00 0.00 0.00 3.46
60 61 4.926238 GCATAATCCATCTCTACACCTTCG 59.074 45.833 0.00 0.00 0.00 3.79
61 62 5.279006 GCATAATCCATCTCTACACCTTCGA 60.279 44.000 0.00 0.00 0.00 3.71
62 63 4.927978 AATCCATCTCTACACCTTCGAG 57.072 45.455 0.00 0.00 0.00 4.04
63 64 3.646736 TCCATCTCTACACCTTCGAGA 57.353 47.619 0.00 0.00 38.10 4.04
64 65 3.546724 TCCATCTCTACACCTTCGAGAG 58.453 50.000 0.00 0.00 37.24 3.20
66 67 3.314080 CCATCTCTACACCTTCGAGAGAC 59.686 52.174 3.08 0.00 46.36 3.36
67 68 3.985019 TCTCTACACCTTCGAGAGACT 57.015 47.619 0.00 0.00 40.58 3.24
68 69 5.361427 CATCTCTACACCTTCGAGAGACTA 58.639 45.833 3.08 0.00 46.36 2.59
69 70 5.417754 TCTCTACACCTTCGAGAGACTAA 57.582 43.478 0.00 0.00 40.58 2.24
70 71 5.421277 TCTCTACACCTTCGAGAGACTAAG 58.579 45.833 0.00 0.00 40.58 2.18
71 72 4.515361 TCTACACCTTCGAGAGACTAAGG 58.485 47.826 0.00 0.00 44.07 2.69
72 73 1.819903 ACACCTTCGAGAGACTAAGGC 59.180 52.381 2.19 0.00 42.82 4.35
73 74 1.135333 CACCTTCGAGAGACTAAGGCC 59.865 57.143 0.00 0.00 42.82 5.19
74 75 0.747852 CCTTCGAGAGACTAAGGCCC 59.252 60.000 0.00 0.00 41.84 5.80
75 76 1.686741 CCTTCGAGAGACTAAGGCCCT 60.687 57.143 0.00 0.00 41.84 5.19
76 77 1.407258 CTTCGAGAGACTAAGGCCCTG 59.593 57.143 0.00 0.00 41.84 4.45
77 78 0.331954 TCGAGAGACTAAGGCCCTGT 59.668 55.000 0.00 0.00 33.31 4.00
78 79 1.187087 CGAGAGACTAAGGCCCTGTT 58.813 55.000 0.00 0.00 0.00 3.16
79 80 1.550976 CGAGAGACTAAGGCCCTGTTT 59.449 52.381 0.00 0.00 0.00 2.83
80 81 2.675317 CGAGAGACTAAGGCCCTGTTTG 60.675 54.545 0.00 0.00 0.00 2.93
81 82 1.630878 AGAGACTAAGGCCCTGTTTGG 59.369 52.381 0.00 0.00 0.00 3.28
82 83 1.351350 GAGACTAAGGCCCTGTTTGGT 59.649 52.381 0.00 0.00 0.00 3.67
83 84 1.780919 AGACTAAGGCCCTGTTTGGTT 59.219 47.619 0.00 0.00 0.00 3.67
84 85 2.160205 GACTAAGGCCCTGTTTGGTTC 58.840 52.381 0.00 0.00 0.00 3.62
85 86 1.165270 CTAAGGCCCTGTTTGGTTCG 58.835 55.000 0.00 0.00 0.00 3.95
86 87 0.250989 TAAGGCCCTGTTTGGTTCGG 60.251 55.000 0.00 0.00 0.00 4.30
87 88 3.680786 GGCCCTGTTTGGTTCGGC 61.681 66.667 0.00 0.00 38.96 5.54
88 89 2.597510 GCCCTGTTTGGTTCGGCT 60.598 61.111 0.00 0.00 36.65 5.52
89 90 2.919494 GCCCTGTTTGGTTCGGCTG 61.919 63.158 0.00 0.00 36.65 4.85
90 91 1.528309 CCCTGTTTGGTTCGGCTGT 60.528 57.895 0.00 0.00 0.00 4.40
91 92 1.654220 CCTGTTTGGTTCGGCTGTG 59.346 57.895 0.00 0.00 0.00 3.66
92 93 1.654220 CTGTTTGGTTCGGCTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
93 94 0.817634 CTGTTTGGTTCGGCTGTGGA 60.818 55.000 0.00 0.00 0.00 4.02
94 95 0.179004 TGTTTGGTTCGGCTGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
95 96 0.958822 GTTTGGTTCGGCTGTGGATT 59.041 50.000 0.00 0.00 0.00 3.01
96 97 1.339929 GTTTGGTTCGGCTGTGGATTT 59.660 47.619 0.00 0.00 0.00 2.17
97 98 1.243902 TTGGTTCGGCTGTGGATTTC 58.756 50.000 0.00 0.00 0.00 2.17
98 99 0.400213 TGGTTCGGCTGTGGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
99 100 1.626321 TGGTTCGGCTGTGGATTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
100 101 2.039216 TGGTTCGGCTGTGGATTTCTAA 59.961 45.455 0.00 0.00 0.00 2.10
101 102 3.078837 GGTTCGGCTGTGGATTTCTAAA 58.921 45.455 0.00 0.00 0.00 1.85
102 103 3.504520 GGTTCGGCTGTGGATTTCTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
103 104 4.379499 GGTTCGGCTGTGGATTTCTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
104 105 4.015872 TCGGCTGTGGATTTCTAAAAGT 57.984 40.909 0.00 0.00 0.00 2.66
105 106 5.155278 TCGGCTGTGGATTTCTAAAAGTA 57.845 39.130 0.00 0.00 0.00 2.24
106 107 5.175859 TCGGCTGTGGATTTCTAAAAGTAG 58.824 41.667 0.00 0.00 0.00 2.57
107 108 4.201822 CGGCTGTGGATTTCTAAAAGTAGC 60.202 45.833 0.00 0.00 0.00 3.58
108 109 4.944317 GGCTGTGGATTTCTAAAAGTAGCT 59.056 41.667 0.00 0.00 0.00 3.32
109 110 5.163713 GGCTGTGGATTTCTAAAAGTAGCTG 60.164 44.000 0.00 0.00 0.00 4.24
110 111 5.412904 GCTGTGGATTTCTAAAAGTAGCTGT 59.587 40.000 0.00 0.00 0.00 4.40
111 112 6.621596 GCTGTGGATTTCTAAAAGTAGCTGTG 60.622 42.308 0.00 0.00 0.00 3.66
112 113 6.530120 TGTGGATTTCTAAAAGTAGCTGTGA 58.470 36.000 0.00 0.00 0.00 3.58
113 114 6.995686 TGTGGATTTCTAAAAGTAGCTGTGAA 59.004 34.615 0.00 0.00 0.00 3.18
114 115 7.500892 TGTGGATTTCTAAAAGTAGCTGTGAAA 59.499 33.333 0.00 0.00 0.00 2.69
115 116 8.349983 GTGGATTTCTAAAAGTAGCTGTGAAAA 58.650 33.333 0.00 0.00 0.00 2.29
116 117 8.908903 TGGATTTCTAAAAGTAGCTGTGAAAAA 58.091 29.630 0.00 0.00 0.00 1.94
117 118 9.914131 GGATTTCTAAAAGTAGCTGTGAAAAAT 57.086 29.630 0.00 0.00 0.00 1.82
120 121 9.950680 TTTCTAAAAGTAGCTGTGAAAAATCTG 57.049 29.630 0.00 0.00 0.00 2.90
121 122 7.584987 TCTAAAAGTAGCTGTGAAAAATCTGC 58.415 34.615 0.00 0.00 0.00 4.26
122 123 6.396829 AAAAGTAGCTGTGAAAAATCTGCT 57.603 33.333 0.00 0.00 40.71 4.24
123 124 5.368256 AAGTAGCTGTGAAAAATCTGCTG 57.632 39.130 0.00 0.00 38.77 4.41
124 125 4.392940 AGTAGCTGTGAAAAATCTGCTGT 58.607 39.130 0.00 0.00 38.77 4.40
125 126 3.637998 AGCTGTGAAAAATCTGCTGTG 57.362 42.857 0.00 0.00 37.44 3.66
126 127 2.295349 AGCTGTGAAAAATCTGCTGTGG 59.705 45.455 0.00 0.00 37.44 4.17
127 128 2.294233 GCTGTGAAAAATCTGCTGTGGA 59.706 45.455 0.00 0.00 0.00 4.02
128 129 3.243501 GCTGTGAAAAATCTGCTGTGGAA 60.244 43.478 0.00 0.00 0.00 3.53
129 130 4.737352 GCTGTGAAAAATCTGCTGTGGAAA 60.737 41.667 0.00 0.00 0.00 3.13
130 131 5.336150 TGTGAAAAATCTGCTGTGGAAAA 57.664 34.783 0.00 0.00 0.00 2.29
131 132 5.916318 TGTGAAAAATCTGCTGTGGAAAAT 58.084 33.333 0.00 0.00 0.00 1.82
132 133 5.984926 TGTGAAAAATCTGCTGTGGAAAATC 59.015 36.000 0.00 0.00 0.00 2.17
133 134 6.183360 TGTGAAAAATCTGCTGTGGAAAATCT 60.183 34.615 0.00 0.00 0.00 2.40
134 135 6.145048 GTGAAAAATCTGCTGTGGAAAATCTG 59.855 38.462 0.00 0.00 0.00 2.90
135 136 6.040729 TGAAAAATCTGCTGTGGAAAATCTGA 59.959 34.615 0.00 0.00 0.00 3.27
136 137 6.600882 AAAATCTGCTGTGGAAAATCTGAT 57.399 33.333 0.00 0.00 0.00 2.90
137 138 7.707624 AAAATCTGCTGTGGAAAATCTGATA 57.292 32.000 0.00 0.00 0.00 2.15
138 139 7.893124 AAATCTGCTGTGGAAAATCTGATAT 57.107 32.000 0.00 0.00 0.00 1.63
139 140 6.879276 ATCTGCTGTGGAAAATCTGATATG 57.121 37.500 0.00 0.00 0.00 1.78
140 141 5.993055 TCTGCTGTGGAAAATCTGATATGA 58.007 37.500 0.00 0.00 0.00 2.15
141 142 6.417258 TCTGCTGTGGAAAATCTGATATGAA 58.583 36.000 0.00 0.00 0.00 2.57
142 143 6.885918 TCTGCTGTGGAAAATCTGATATGAAA 59.114 34.615 0.00 0.00 0.00 2.69
143 144 7.394077 TCTGCTGTGGAAAATCTGATATGAAAA 59.606 33.333 0.00 0.00 0.00 2.29
144 145 7.894708 TGCTGTGGAAAATCTGATATGAAAAA 58.105 30.769 0.00 0.00 0.00 1.94
145 146 8.030692 TGCTGTGGAAAATCTGATATGAAAAAG 58.969 33.333 0.00 0.00 0.00 2.27
146 147 8.246180 GCTGTGGAAAATCTGATATGAAAAAGA 58.754 33.333 0.00 0.00 0.00 2.52
160 161 9.956720 GATATGAAAAAGATGTAGGTCATTTGG 57.043 33.333 0.00 0.00 36.83 3.28
161 162 6.024552 TGAAAAAGATGTAGGTCATTTGGC 57.975 37.500 0.00 0.00 36.83 4.52
162 163 5.538053 TGAAAAAGATGTAGGTCATTTGGCA 59.462 36.000 0.00 0.00 36.83 4.92
163 164 6.041409 TGAAAAAGATGTAGGTCATTTGGCAA 59.959 34.615 0.00 0.00 36.83 4.52
164 165 6.418057 AAAAGATGTAGGTCATTTGGCAAA 57.582 33.333 16.01 16.01 36.83 3.68
165 166 5.391312 AAGATGTAGGTCATTTGGCAAAC 57.609 39.130 16.00 3.12 36.83 2.93
166 167 4.666512 AGATGTAGGTCATTTGGCAAACT 58.333 39.130 16.00 10.25 36.83 2.66
167 168 5.815581 AGATGTAGGTCATTTGGCAAACTA 58.184 37.500 16.00 9.22 36.83 2.24
168 169 5.882557 AGATGTAGGTCATTTGGCAAACTAG 59.117 40.000 16.00 8.58 36.83 2.57
169 170 3.756434 TGTAGGTCATTTGGCAAACTAGC 59.244 43.478 16.00 15.02 0.00 3.42
170 171 3.160679 AGGTCATTTGGCAAACTAGCT 57.839 42.857 16.00 16.95 34.17 3.32
171 172 2.821969 AGGTCATTTGGCAAACTAGCTG 59.178 45.455 16.00 9.43 34.17 4.24
172 173 2.819608 GGTCATTTGGCAAACTAGCTGA 59.180 45.455 16.00 11.74 34.17 4.26
173 174 3.445096 GGTCATTTGGCAAACTAGCTGAT 59.555 43.478 16.00 0.00 34.17 2.90
174 175 4.640201 GGTCATTTGGCAAACTAGCTGATA 59.360 41.667 16.00 0.00 34.17 2.15
175 176 5.449177 GGTCATTTGGCAAACTAGCTGATAC 60.449 44.000 16.00 8.26 34.17 2.24
176 177 5.123820 GTCATTTGGCAAACTAGCTGATACA 59.876 40.000 16.00 0.00 34.17 2.29
177 178 5.355071 TCATTTGGCAAACTAGCTGATACAG 59.645 40.000 16.00 0.00 34.17 2.74
193 194 7.807687 CTGATACAGCTTTTTCAGATTTTGG 57.192 36.000 13.26 0.00 38.25 3.28
194 195 6.158598 TGATACAGCTTTTTCAGATTTTGGC 58.841 36.000 0.00 0.00 0.00 4.52
195 196 3.732212 ACAGCTTTTTCAGATTTTGGCC 58.268 40.909 0.00 0.00 0.00 5.36
196 197 3.069289 CAGCTTTTTCAGATTTTGGCCC 58.931 45.455 0.00 0.00 0.00 5.80
197 198 2.068519 GCTTTTTCAGATTTTGGCCCG 58.931 47.619 0.00 0.00 0.00 6.13
198 199 2.068519 CTTTTTCAGATTTTGGCCCGC 58.931 47.619 0.00 0.00 0.00 6.13
199 200 1.043816 TTTTCAGATTTTGGCCCGCA 58.956 45.000 0.00 0.00 0.00 5.69
200 201 0.602562 TTTCAGATTTTGGCCCGCAG 59.397 50.000 0.00 0.00 0.00 5.18
201 202 1.876497 TTCAGATTTTGGCCCGCAGC 61.876 55.000 0.00 0.00 42.60 5.25
202 203 3.443045 AGATTTTGGCCCGCAGCG 61.443 61.111 8.18 8.18 45.17 5.18
216 217 2.719798 CGCAGCGGAATTAGATTTTGG 58.280 47.619 7.00 0.00 0.00 3.28
217 218 2.354510 CGCAGCGGAATTAGATTTTGGA 59.645 45.455 7.00 0.00 0.00 3.53
218 219 3.181501 CGCAGCGGAATTAGATTTTGGAA 60.182 43.478 7.00 0.00 0.00 3.53
219 220 4.674101 CGCAGCGGAATTAGATTTTGGAAA 60.674 41.667 7.00 0.00 0.00 3.13
220 221 5.167845 GCAGCGGAATTAGATTTTGGAAAA 58.832 37.500 0.00 0.00 0.00 2.29
221 222 5.289434 GCAGCGGAATTAGATTTTGGAAAAG 59.711 40.000 0.00 0.00 0.00 2.27
222 223 5.289434 CAGCGGAATTAGATTTTGGAAAAGC 59.711 40.000 0.00 0.00 34.68 3.51
223 224 5.047377 AGCGGAATTAGATTTTGGAAAAGCA 60.047 36.000 3.19 0.00 36.79 3.91
224 225 5.062183 GCGGAATTAGATTTTGGAAAAGCAC 59.938 40.000 3.19 0.00 36.79 4.40
225 226 6.389906 CGGAATTAGATTTTGGAAAAGCACT 58.610 36.000 3.19 0.37 36.79 4.40
226 227 6.868339 CGGAATTAGATTTTGGAAAAGCACTT 59.132 34.615 3.19 0.00 36.79 3.16
227 228 7.062255 CGGAATTAGATTTTGGAAAAGCACTTC 59.938 37.037 3.19 3.07 36.79 3.01
228 229 7.331934 GGAATTAGATTTTGGAAAAGCACTTCC 59.668 37.037 9.36 9.36 44.54 3.46
229 230 6.976934 TTAGATTTTGGAAAAGCACTTCCT 57.023 33.333 15.55 0.00 44.57 3.36
230 231 5.205759 AGATTTTGGAAAAGCACTTCCTG 57.794 39.130 15.55 0.00 44.57 3.86
231 232 3.817709 TTTTGGAAAAGCACTTCCTGG 57.182 42.857 15.55 0.00 44.57 4.45
232 233 1.703411 TTGGAAAAGCACTTCCTGGG 58.297 50.000 15.55 0.00 44.57 4.45
238 239 2.282745 GCACTTCCTGGGCTGCTT 60.283 61.111 0.00 0.00 43.01 3.91
239 240 2.338785 GCACTTCCTGGGCTGCTTC 61.339 63.158 0.00 0.00 43.01 3.86
240 241 1.676967 CACTTCCTGGGCTGCTTCC 60.677 63.158 0.00 0.00 0.00 3.46
241 242 2.437359 CTTCCTGGGCTGCTTCCG 60.437 66.667 0.00 0.00 0.00 4.30
242 243 4.722700 TTCCTGGGCTGCTTCCGC 62.723 66.667 0.00 0.00 0.00 5.54
244 245 4.729918 CCTGGGCTGCTTCCGCTT 62.730 66.667 0.00 0.00 36.97 4.68
245 246 2.674380 CTGGGCTGCTTCCGCTTT 60.674 61.111 0.00 0.00 36.97 3.51
246 247 2.203480 TGGGCTGCTTCCGCTTTT 60.203 55.556 0.00 0.00 36.97 2.27
247 248 2.259511 GGGCTGCTTCCGCTTTTG 59.740 61.111 0.00 0.00 36.97 2.44
248 249 2.259511 GGCTGCTTCCGCTTTTGG 59.740 61.111 0.00 0.00 36.97 3.28
249 250 2.564721 GGCTGCTTCCGCTTTTGGT 61.565 57.895 0.00 0.00 36.97 3.67
250 251 1.363807 GCTGCTTCCGCTTTTGGTT 59.636 52.632 0.00 0.00 36.97 3.67
251 252 0.664466 GCTGCTTCCGCTTTTGGTTC 60.664 55.000 0.00 0.00 36.97 3.62
252 253 0.667993 CTGCTTCCGCTTTTGGTTCA 59.332 50.000 0.00 0.00 36.97 3.18
253 254 0.667993 TGCTTCCGCTTTTGGTTCAG 59.332 50.000 0.00 0.00 36.97 3.02
254 255 0.951558 GCTTCCGCTTTTGGTTCAGA 59.048 50.000 0.00 0.00 0.00 3.27
255 256 1.541588 GCTTCCGCTTTTGGTTCAGAT 59.458 47.619 0.00 0.00 0.00 2.90
256 257 2.029918 GCTTCCGCTTTTGGTTCAGATT 60.030 45.455 0.00 0.00 0.00 2.40
257 258 3.552890 GCTTCCGCTTTTGGTTCAGATTT 60.553 43.478 0.00 0.00 0.00 2.17
258 259 4.620982 CTTCCGCTTTTGGTTCAGATTTT 58.379 39.130 0.00 0.00 0.00 1.82
259 260 3.976169 TCCGCTTTTGGTTCAGATTTTG 58.024 40.909 0.00 0.00 0.00 2.44
260 261 3.059166 CCGCTTTTGGTTCAGATTTTGG 58.941 45.455 0.00 0.00 0.00 3.28
261 262 2.476241 CGCTTTTGGTTCAGATTTTGGC 59.524 45.455 0.00 0.00 0.00 4.52
262 263 3.465871 GCTTTTGGTTCAGATTTTGGCA 58.534 40.909 0.00 0.00 0.00 4.92
263 264 3.495753 GCTTTTGGTTCAGATTTTGGCAG 59.504 43.478 0.00 0.00 0.00 4.85
264 265 2.818130 TTGGTTCAGATTTTGGCAGC 57.182 45.000 0.00 0.00 0.00 5.25
265 266 0.597568 TGGTTCAGATTTTGGCAGCG 59.402 50.000 0.00 0.00 0.00 5.18
266 267 0.109132 GGTTCAGATTTTGGCAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
267 268 0.881118 GTTCAGATTTTGGCAGCGGA 59.119 50.000 0.00 0.00 0.00 5.54
268 269 1.474077 GTTCAGATTTTGGCAGCGGAT 59.526 47.619 0.00 0.00 0.00 4.18
269 270 1.838112 TCAGATTTTGGCAGCGGATT 58.162 45.000 0.00 0.00 0.00 3.01
270 271 2.170166 TCAGATTTTGGCAGCGGATTT 58.830 42.857 0.00 0.00 0.00 2.17
271 272 2.164219 TCAGATTTTGGCAGCGGATTTC 59.836 45.455 0.00 0.00 0.00 2.17
272 273 2.094597 CAGATTTTGGCAGCGGATTTCA 60.095 45.455 0.00 0.00 0.00 2.69
273 274 2.165030 AGATTTTGGCAGCGGATTTCAG 59.835 45.455 0.00 0.00 0.00 3.02
274 275 0.602562 TTTTGGCAGCGGATTTCAGG 59.397 50.000 0.00 0.00 0.00 3.86
275 276 0.251121 TTTGGCAGCGGATTTCAGGA 60.251 50.000 0.00 0.00 0.00 3.86
276 277 0.251121 TTGGCAGCGGATTTCAGGAA 60.251 50.000 0.00 0.00 0.00 3.36
277 278 0.034186 TGGCAGCGGATTTCAGGAAT 60.034 50.000 0.00 0.00 0.00 3.01
278 279 0.665298 GGCAGCGGATTTCAGGAATC 59.335 55.000 0.00 0.00 42.84 2.52
279 280 0.305922 GCAGCGGATTTCAGGAATCG 59.694 55.000 0.00 0.00 44.21 3.34
280 281 0.940126 CAGCGGATTTCAGGAATCGG 59.060 55.000 4.85 4.85 44.21 4.18
281 282 0.830648 AGCGGATTTCAGGAATCGGA 59.169 50.000 12.27 0.00 44.21 4.55
282 283 1.417890 AGCGGATTTCAGGAATCGGAT 59.582 47.619 12.27 3.76 44.21 4.18
283 284 2.158755 AGCGGATTTCAGGAATCGGATT 60.159 45.455 12.27 2.19 44.21 3.01
284 285 2.224314 GCGGATTTCAGGAATCGGATTC 59.776 50.000 20.01 20.01 44.21 2.52
285 286 3.733337 CGGATTTCAGGAATCGGATTCT 58.267 45.455 25.29 12.14 44.21 2.40
286 287 3.496130 CGGATTTCAGGAATCGGATTCTG 59.504 47.826 25.29 20.65 44.21 3.02
287 288 3.251972 GGATTTCAGGAATCGGATTCTGC 59.748 47.826 25.29 13.07 44.21 4.26
288 289 3.634397 TTTCAGGAATCGGATTCTGCT 57.366 42.857 25.29 14.84 39.24 4.24
289 290 2.609427 TCAGGAATCGGATTCTGCTG 57.391 50.000 25.29 23.10 39.24 4.41
290 291 1.139654 TCAGGAATCGGATTCTGCTGG 59.860 52.381 25.29 13.20 39.24 4.85
291 292 0.471617 AGGAATCGGATTCTGCTGGG 59.528 55.000 25.29 0.00 39.24 4.45
292 293 0.181350 GGAATCGGATTCTGCTGGGT 59.819 55.000 25.29 0.00 39.24 4.51
293 294 1.408822 GGAATCGGATTCTGCTGGGTT 60.409 52.381 25.29 0.00 39.24 4.11
294 295 1.943340 GAATCGGATTCTGCTGGGTTC 59.057 52.381 20.70 0.00 36.37 3.62
295 296 0.179073 ATCGGATTCTGCTGGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
296 297 2.464459 CGGATTCTGCTGGGTTCGC 61.464 63.158 0.00 0.00 0.00 4.70
297 298 2.115291 GGATTCTGCTGGGTTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
307 308 4.167597 GGTTCGCCCTTTGGTTCA 57.832 55.556 0.00 0.00 0.00 3.18
308 309 1.956802 GGTTCGCCCTTTGGTTCAG 59.043 57.895 0.00 0.00 0.00 3.02
309 310 0.536460 GGTTCGCCCTTTGGTTCAGA 60.536 55.000 0.00 0.00 0.00 3.27
310 311 1.534729 GTTCGCCCTTTGGTTCAGAT 58.465 50.000 0.00 0.00 0.00 2.90
311 312 1.886542 GTTCGCCCTTTGGTTCAGATT 59.113 47.619 0.00 0.00 0.00 2.40
312 313 1.821216 TCGCCCTTTGGTTCAGATTC 58.179 50.000 0.00 0.00 0.00 2.52
313 314 1.351017 TCGCCCTTTGGTTCAGATTCT 59.649 47.619 0.00 0.00 0.00 2.40
314 315 1.470098 CGCCCTTTGGTTCAGATTCTG 59.530 52.381 7.38 7.38 0.00 3.02
315 316 1.203287 GCCCTTTGGTTCAGATTCTGC 59.797 52.381 8.89 0.00 0.00 4.26
316 317 2.800250 CCCTTTGGTTCAGATTCTGCT 58.200 47.619 8.89 0.00 0.00 4.24
317 318 2.490903 CCCTTTGGTTCAGATTCTGCTG 59.509 50.000 8.89 0.00 37.24 4.41
318 319 2.094854 CCTTTGGTTCAGATTCTGCTGC 60.095 50.000 8.89 0.00 35.86 5.25
319 320 1.159285 TTGGTTCAGATTCTGCTGCG 58.841 50.000 8.89 0.00 35.86 5.18
320 321 1.300971 TGGTTCAGATTCTGCTGCGC 61.301 55.000 8.89 0.00 35.86 6.09
321 322 1.059994 GTTCAGATTCTGCTGCGCG 59.940 57.895 8.89 0.00 35.86 6.86
322 323 1.079888 TTCAGATTCTGCTGCGCGA 60.080 52.632 12.10 0.00 35.86 5.87
323 324 1.354337 TTCAGATTCTGCTGCGCGAC 61.354 55.000 12.10 0.88 35.86 5.19
324 325 2.096442 CAGATTCTGCTGCGCGACA 61.096 57.895 12.10 6.68 0.00 4.35
325 326 1.374631 AGATTCTGCTGCGCGACAA 60.375 52.632 12.10 0.00 0.00 3.18
326 327 1.225854 GATTCTGCTGCGCGACAAC 60.226 57.895 12.10 3.36 0.00 3.32
327 328 2.870146 GATTCTGCTGCGCGACAACG 62.870 60.000 12.10 0.00 42.93 4.10
331 332 3.788766 GCTGCGCGACAACGGAAT 61.789 61.111 12.10 0.00 40.15 3.01
332 333 2.395690 CTGCGCGACAACGGAATC 59.604 61.111 12.10 0.00 40.15 2.52
333 334 3.083600 CTGCGCGACAACGGAATCC 62.084 63.158 12.10 0.00 40.15 3.01
345 346 2.924432 CGGAATCCGTCGATAAAAGC 57.076 50.000 14.46 0.00 42.73 3.51
346 347 2.470821 CGGAATCCGTCGATAAAAGCT 58.529 47.619 14.46 0.00 42.73 3.74
347 348 2.218759 CGGAATCCGTCGATAAAAGCTG 59.781 50.000 14.46 0.00 42.73 4.24
348 349 3.454375 GGAATCCGTCGATAAAAGCTGA 58.546 45.455 0.00 0.00 0.00 4.26
349 350 3.869246 GGAATCCGTCGATAAAAGCTGAA 59.131 43.478 0.00 0.00 0.00 3.02
350 351 4.260253 GGAATCCGTCGATAAAAGCTGAAC 60.260 45.833 0.00 0.00 0.00 3.18
351 352 2.613691 TCCGTCGATAAAAGCTGAACC 58.386 47.619 0.00 0.00 0.00 3.62
352 353 2.028839 TCCGTCGATAAAAGCTGAACCA 60.029 45.455 0.00 0.00 0.00 3.67
353 354 2.739913 CCGTCGATAAAAGCTGAACCAA 59.260 45.455 0.00 0.00 0.00 3.67
354 355 3.187637 CCGTCGATAAAAGCTGAACCAAA 59.812 43.478 0.00 0.00 0.00 3.28
355 356 4.148891 CGTCGATAAAAGCTGAACCAAAC 58.851 43.478 0.00 0.00 0.00 2.93
356 357 4.319190 CGTCGATAAAAGCTGAACCAAACA 60.319 41.667 0.00 0.00 0.00 2.83
357 358 5.147162 GTCGATAAAAGCTGAACCAAACAG 58.853 41.667 0.00 0.00 38.27 3.16
358 359 4.215399 TCGATAAAAGCTGAACCAAACAGG 59.785 41.667 0.00 0.00 45.67 4.00
359 360 4.615912 CGATAAAAGCTGAACCAAACAGGG 60.616 45.833 0.00 0.00 43.89 4.45
360 361 0.752658 AAAGCTGAACCAAACAGGGC 59.247 50.000 0.00 0.00 43.89 5.19
361 362 1.115326 AAGCTGAACCAAACAGGGCC 61.115 55.000 0.00 0.00 43.89 5.80
362 363 1.531602 GCTGAACCAAACAGGGCCT 60.532 57.895 0.00 0.00 43.89 5.19
363 364 0.251165 GCTGAACCAAACAGGGCCTA 60.251 55.000 5.28 0.00 43.89 3.93
438 439 1.606313 ATTCCACACCGCCAAAGGG 60.606 57.895 0.00 0.00 35.02 3.95
448 449 1.546998 CCGCCAAAGGGTAAAAGGAGT 60.547 52.381 0.00 0.00 36.17 3.85
501 506 4.607293 AGTTTCCTCCAAAATTCAAGCC 57.393 40.909 0.00 0.00 0.00 4.35
502 507 4.226384 AGTTTCCTCCAAAATTCAAGCCT 58.774 39.130 0.00 0.00 0.00 4.58
503 508 4.655649 AGTTTCCTCCAAAATTCAAGCCTT 59.344 37.500 0.00 0.00 0.00 4.35
504 509 5.130975 AGTTTCCTCCAAAATTCAAGCCTTT 59.869 36.000 0.00 0.00 0.00 3.11
505 510 5.628797 TTCCTCCAAAATTCAAGCCTTTT 57.371 34.783 0.00 0.00 0.00 2.27
506 511 4.959723 TCCTCCAAAATTCAAGCCTTTTG 58.040 39.130 0.00 0.00 40.42 2.44
507 512 3.499537 CCTCCAAAATTCAAGCCTTTTGC 59.500 43.478 0.00 0.00 39.75 3.68
520 525 4.737353 GCCTTTTGCTCCAAAATTGAAG 57.263 40.909 3.87 0.00 41.53 3.02
521 526 3.058708 GCCTTTTGCTCCAAAATTGAAGC 60.059 43.478 0.00 0.00 41.53 3.86
751 760 7.119997 CGTTCAGATGATTTAGAATTCGGAAC 58.880 38.462 0.00 0.00 37.81 3.62
752 761 7.201522 CGTTCAGATGATTTAGAATTCGGAACA 60.202 37.037 12.35 0.00 39.72 3.18
768 777 1.170290 AACACACCCACCGCTAAAGC 61.170 55.000 0.00 0.00 37.78 3.51
829 838 1.152383 GCCGACGGATAAGGAGCAAC 61.152 60.000 20.50 0.00 0.00 4.17
842 864 4.980805 GCAACGTGTCGGAGGCCA 62.981 66.667 5.01 0.00 0.00 5.36
895 917 1.257750 GGGGAAATGACAAGGGCCAC 61.258 60.000 6.18 0.00 0.00 5.01
939 961 2.489971 CTCACTAGGAGCTAGGAGACG 58.510 57.143 0.00 0.00 38.30 4.18
949 972 1.542547 GCTAGGAGACGGAGAGAGAGG 60.543 61.905 0.00 0.00 0.00 3.69
951 974 0.917333 AGGAGACGGAGAGAGAGGGT 60.917 60.000 0.00 0.00 0.00 4.34
952 975 0.838608 GGAGACGGAGAGAGAGGGTA 59.161 60.000 0.00 0.00 0.00 3.69
953 976 1.422402 GGAGACGGAGAGAGAGGGTAT 59.578 57.143 0.00 0.00 0.00 2.73
956 979 2.158726 AGACGGAGAGAGAGGGTATGAC 60.159 54.545 0.00 0.00 0.00 3.06
957 980 1.133730 ACGGAGAGAGAGGGTATGACC 60.134 57.143 0.00 0.00 37.60 4.02
1053 1076 1.228033 GGCGTTTACACCACCACCT 60.228 57.895 0.00 0.00 0.00 4.00
1054 1077 0.035176 GGCGTTTACACCACCACCTA 59.965 55.000 0.00 0.00 0.00 3.08
1055 1078 1.435577 GCGTTTACACCACCACCTAG 58.564 55.000 0.00 0.00 0.00 3.02
1056 1079 1.942586 GCGTTTACACCACCACCTAGG 60.943 57.143 7.41 7.41 45.67 3.02
1057 1080 1.619827 CGTTTACACCACCACCTAGGA 59.380 52.381 17.98 0.00 41.22 2.94
1058 1081 2.611224 CGTTTACACCACCACCTAGGAC 60.611 54.545 17.98 0.00 41.22 3.85
1084 1107 2.935740 GCAAGAAACAGGGCAGGGC 61.936 63.158 0.00 0.00 0.00 5.19
1268 1293 3.318557 CCCAAGACCGTAATACTCTCTCC 59.681 52.174 0.00 0.00 0.00 3.71
1280 1305 1.275002 ACTCTCTCCCTCTCCCTCTCT 60.275 57.143 0.00 0.00 0.00 3.10
1281 1306 1.852965 CTCTCTCCCTCTCCCTCTCTT 59.147 57.143 0.00 0.00 0.00 2.85
1283 1308 2.657459 TCTCTCCCTCTCCCTCTCTTTT 59.343 50.000 0.00 0.00 0.00 2.27
1286 1311 2.167487 CTCCCTCTCCCTCTCTTTTTCG 59.833 54.545 0.00 0.00 0.00 3.46
1400 1440 1.202639 CCTGGTTTGGGGTGCTTTTTC 60.203 52.381 0.00 0.00 0.00 2.29
1418 1463 3.536956 TTCGGTCTCTCTCTCTCTCTC 57.463 52.381 0.00 0.00 0.00 3.20
1419 1464 2.747177 TCGGTCTCTCTCTCTCTCTCT 58.253 52.381 0.00 0.00 0.00 3.10
1420 1465 2.693591 TCGGTCTCTCTCTCTCTCTCTC 59.306 54.545 0.00 0.00 0.00 3.20
1421 1466 2.695666 CGGTCTCTCTCTCTCTCTCTCT 59.304 54.545 0.00 0.00 0.00 3.10
1422 1467 3.243569 CGGTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
1423 1468 3.964031 GGTCTCTCTCTCTCTCTCTCTCT 59.036 52.174 0.00 0.00 0.00 3.10
1424 1469 4.038642 GGTCTCTCTCTCTCTCTCTCTCTC 59.961 54.167 0.00 0.00 0.00 3.20
1425 1470 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
1426 1471 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
1427 1472 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1428 1473 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1429 1474 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1430 1475 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1431 1476 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1432 1477 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1433 1478 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1434 1479 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1435 1480 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1436 1481 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1437 1482 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1438 1483 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1439 1484 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1440 1485 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1441 1486 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1442 1487 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1443 1488 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1444 1489 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1445 1490 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1446 1491 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1447 1492 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1448 1493 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1449 1494 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1450 1495 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1451 1496 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1452 1497 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1453 1498 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1454 1499 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1455 1500 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1515 1567 9.463443 CTTAATCTTGGTTCTGAAAACGATTTT 57.537 29.630 9.72 0.00 35.12 1.82
1525 1577 4.927422 TGAAAACGATTTTTGGTGTCCTC 58.073 39.130 0.00 0.00 34.94 3.71
1575 1628 1.551883 AGGATTGTTGCAAATGCCTCC 59.448 47.619 0.00 3.73 41.18 4.30
1609 1664 4.202070 GGTTTCGGTGATCTTCTCCTAGAG 60.202 50.000 0.00 0.00 0.00 2.43
1613 1668 5.067273 TCGGTGATCTTCTCCTAGAGAATC 58.933 45.833 7.46 4.63 45.84 2.52
1627 1682 2.715268 GAGAATCTCTGACGAAGCTCG 58.285 52.381 2.45 4.36 46.93 5.03
1653 1708 7.654520 GGTAAATTCCCAAGTTTTAACCAAGTC 59.345 37.037 0.00 0.00 0.00 3.01
1692 1751 3.366781 GCCTGTTGCATTTTCTTCTCCTC 60.367 47.826 0.00 0.00 40.77 3.71
1693 1752 3.192212 CCTGTTGCATTTTCTTCTCCTCC 59.808 47.826 0.00 0.00 0.00 4.30
1694 1753 4.077822 CTGTTGCATTTTCTTCTCCTCCT 58.922 43.478 0.00 0.00 0.00 3.69
1738 1797 2.093447 AGCCATGTGTTCTAGGTACTGC 60.093 50.000 0.00 0.00 41.52 4.40
1742 1801 2.546899 TGTGTTCTAGGTACTGCCCAT 58.453 47.619 0.00 0.00 41.52 4.00
1811 1870 4.717279 ACTACTAGCACCTTGGGAAAAA 57.283 40.909 0.00 0.00 0.00 1.94
1894 1954 5.127491 AGACGTCCCACTGAAATTTTGTAA 58.873 37.500 13.01 0.00 0.00 2.41
1898 1958 6.017687 ACGTCCCACTGAAATTTTGTAACTAC 60.018 38.462 0.00 0.00 0.00 2.73
1949 2010 2.733517 TCGAACGGCCATTTTGTTTTC 58.266 42.857 2.24 0.00 0.00 2.29
2033 2094 4.579869 AGACCATATTTTGTCTTCGCTGT 58.420 39.130 0.00 0.00 38.67 4.40
2215 2327 6.177610 TGTTTCTCCAGTAACTTGACTGTTT 58.822 36.000 3.11 0.00 44.54 2.83
2255 2367 8.251750 TCAGCATTGTACTTGTGTTTAGATAC 57.748 34.615 0.00 0.00 0.00 2.24
2441 2560 2.418368 TGCTCCAACAGTCAACAGTT 57.582 45.000 0.00 0.00 0.00 3.16
2452 2571 7.167468 CCAACAGTCAACAGTTTTGCTAAATAC 59.833 37.037 0.00 0.00 0.00 1.89
2453 2572 7.328277 ACAGTCAACAGTTTTGCTAAATACA 57.672 32.000 0.00 0.00 0.00 2.29
2454 2573 7.417612 ACAGTCAACAGTTTTGCTAAATACAG 58.582 34.615 0.00 0.00 0.00 2.74
2455 2574 7.067008 ACAGTCAACAGTTTTGCTAAATACAGT 59.933 33.333 0.00 0.00 0.00 3.55
2456 2575 8.556194 CAGTCAACAGTTTTGCTAAATACAGTA 58.444 33.333 0.00 0.00 0.00 2.74
2696 2818 1.940613 CGGCCCTCTTCTTAATTTCGG 59.059 52.381 0.00 0.00 0.00 4.30
2823 2945 3.116096 TCAGGGACATGCTTACCTACT 57.884 47.619 0.00 0.00 0.00 2.57
2824 2946 2.766263 TCAGGGACATGCTTACCTACTG 59.234 50.000 0.00 0.00 0.00 2.74
2862 2984 5.736951 AACTGAGATAGCAAGAGACAAGT 57.263 39.130 0.00 0.00 0.00 3.16
2912 3034 2.961522 TTGCGAACGGAAATCTTGAC 57.038 45.000 0.00 0.00 0.00 3.18
2942 3064 4.448210 GTTTCACTTCACTTAGTCCACCA 58.552 43.478 0.00 0.00 0.00 4.17
2965 3087 5.120830 CACAATAAGTTCTCACTTTCCTCCG 59.879 44.000 0.00 0.00 40.66 4.63
2981 3103 3.123804 CCTCCGGTAGAAAATCGTGATG 58.876 50.000 0.00 0.00 0.00 3.07
2989 3112 4.946784 AGAAAATCGTGATGTTAGGTGC 57.053 40.909 0.00 0.00 0.00 5.01
2991 3114 1.006832 AATCGTGATGTTAGGTGCGC 58.993 50.000 0.00 0.00 0.00 6.09
2995 3118 0.447801 GTGATGTTAGGTGCGCAAGG 59.552 55.000 14.00 0.00 38.28 3.61
3035 3159 8.883731 CGAGATAAGCTATTTTCTCCTTTTGAA 58.116 33.333 0.00 0.00 39.18 2.69
3081 3207 6.785191 TCATTTTGACGATTTAGATTCTGGC 58.215 36.000 0.00 0.00 0.00 4.85
3103 3229 4.307432 CGAACCGACTTATATCTGCCATT 58.693 43.478 0.00 0.00 0.00 3.16
3111 3241 6.400409 CGACTTATATCTGCCATTGATTCACG 60.400 42.308 0.00 0.00 0.00 4.35
3142 3272 1.728971 CTTCTGAGGTTAGCTGTTGCG 59.271 52.381 0.00 0.00 45.42 4.85
3152 3282 2.575694 AGCTGTTGCGATCTCTACAG 57.424 50.000 18.97 18.97 45.42 2.74
3164 3294 5.218885 CGATCTCTACAGCCTTATGTCTTG 58.781 45.833 0.00 0.00 34.56 3.02
3165 3295 4.392921 TCTCTACAGCCTTATGTCTTGC 57.607 45.455 0.00 0.00 34.56 4.01
3239 3373 2.418368 TTAGTGCACATGGATGGGTC 57.582 50.000 21.04 0.00 32.57 4.46
3448 3594 3.859386 GCATAACAGTGCAAACAATAGCC 59.141 43.478 0.00 0.00 44.43 3.93
3450 3596 5.163663 GCATAACAGTGCAAACAATAGCCTA 60.164 40.000 0.00 0.00 44.43 3.93
3452 3598 4.970662 ACAGTGCAAACAATAGCCTATG 57.029 40.909 0.00 0.00 0.00 2.23
3453 3599 4.588899 ACAGTGCAAACAATAGCCTATGA 58.411 39.130 0.00 0.00 0.00 2.15
3454 3600 5.009631 ACAGTGCAAACAATAGCCTATGAA 58.990 37.500 0.00 0.00 0.00 2.57
3455 3601 5.653769 ACAGTGCAAACAATAGCCTATGAAT 59.346 36.000 0.00 0.00 0.00 2.57
3456 3602 6.828273 ACAGTGCAAACAATAGCCTATGAATA 59.172 34.615 0.00 0.00 0.00 1.75
3457 3603 7.503566 ACAGTGCAAACAATAGCCTATGAATAT 59.496 33.333 0.00 0.00 0.00 1.28
3458 3604 8.019669 CAGTGCAAACAATAGCCTATGAATATC 58.980 37.037 0.00 0.00 0.00 1.63
3495 3641 6.375174 CCTATGGTGAATTGACAATCAACAGA 59.625 38.462 17.47 14.02 45.66 3.41
3533 3684 6.488006 ACTGTGCACATTTCTCAAAGACTAAT 59.512 34.615 22.00 0.00 0.00 1.73
3608 3993 5.765176 CATATTACACATGTTGCCATCCAG 58.235 41.667 0.00 0.00 0.00 3.86
3654 4039 7.255035 GGTGTCTATCATGTCAAGATCCAATTG 60.255 40.741 0.00 0.00 0.00 2.32
3729 4114 4.529897 ACAATCAAGCTCTGCCAATATGA 58.470 39.130 0.00 0.00 0.00 2.15
3743 4176 7.922278 TCTGCCAATATGATGTTCTAATTTTGC 59.078 33.333 0.00 0.00 0.00 3.68
3831 4264 4.016444 CCCAATGTTTCTTAGCTGGCTTA 58.984 43.478 0.00 0.00 0.00 3.09
3889 4322 2.964310 GCTTGAGCCTGAGCCCTCA 61.964 63.158 0.00 0.00 41.25 3.86
3916 4349 2.759114 CTGGGATGCACTGTGGGT 59.241 61.111 10.21 0.00 0.00 4.51
3942 4375 8.228206 TGATATCTCCTCTAGTTGGTATTCTGT 58.772 37.037 3.98 0.00 0.00 3.41
3943 4376 9.742144 GATATCTCCTCTAGTTGGTATTCTGTA 57.258 37.037 0.00 0.00 0.00 2.74
3975 4643 4.242475 TGAGTTGGTATCTAACAAGCACG 58.758 43.478 0.00 0.00 0.00 5.34
3990 4658 2.872370 AGCACGGTCGATACTTAACAC 58.128 47.619 0.00 0.00 0.00 3.32
4011 4679 2.989840 CTGTTCTTCAGTACAAGCCTCG 59.010 50.000 0.00 0.00 39.17 4.63
4016 4684 4.245660 TCTTCAGTACAAGCCTCGAAATG 58.754 43.478 0.00 0.00 0.00 2.32
4028 4696 7.970614 ACAAGCCTCGAAATGAATAGATTTTTC 59.029 33.333 0.00 0.00 0.00 2.29
4047 4715 4.389664 TTCTCTCTCGAATTGTTTTGCG 57.610 40.909 0.00 0.00 0.00 4.85
4138 4806 4.134563 GGAGGAACTTGTGTTTGAGCTAA 58.865 43.478 0.00 0.00 41.55 3.09
4158 4826 6.874134 AGCTAATTGTAACCAATATAGAGGCG 59.126 38.462 0.00 0.00 40.42 5.52
4162 4830 3.884693 TGTAACCAATATAGAGGCGACGA 59.115 43.478 0.00 0.00 0.00 4.20
4179 4847 4.730613 GCGACGACAATTGATAAGCCAAAT 60.731 41.667 13.59 0.00 0.00 2.32
4181 4849 6.482835 CGACGACAATTGATAAGCCAAATAA 58.517 36.000 13.59 0.00 0.00 1.40
4182 4850 6.964370 CGACGACAATTGATAAGCCAAATAAA 59.036 34.615 13.59 0.00 0.00 1.40
4183 4851 7.643764 CGACGACAATTGATAAGCCAAATAAAT 59.356 33.333 13.59 0.00 0.00 1.40
4184 4852 8.633075 ACGACAATTGATAAGCCAAATAAATG 57.367 30.769 13.59 0.00 0.00 2.32
4185 4853 8.250332 ACGACAATTGATAAGCCAAATAAATGT 58.750 29.630 13.59 0.00 0.00 2.71
4186 4854 9.729023 CGACAATTGATAAGCCAAATAAATGTA 57.271 29.630 13.59 0.00 0.00 2.29
4197 4865 9.593134 AAGCCAAATAAATGTATATTTTTGCGA 57.407 25.926 2.55 0.00 36.50 5.10
4239 4907 7.568128 ATTACATGCCTAATCACCCTATGTA 57.432 36.000 0.00 0.00 0.00 2.29
4336 5004 0.527565 GAAACATTCGCTGGGCACAT 59.472 50.000 0.00 0.00 0.00 3.21
4458 5235 5.928976 TGATAGGGTGTTAATCAGGTCATG 58.071 41.667 0.00 0.00 0.00 3.07
4498 5284 5.680619 TGGTATTTCCTCCATGTGTATGTC 58.319 41.667 0.00 0.00 37.07 3.06
4508 5295 5.008980 TCCATGTGTATGTCAATTGAAGCA 58.991 37.500 10.35 5.41 32.21 3.91
4552 5339 6.906157 TTTCTGATCTTGCAAAATCCTTCT 57.094 33.333 10.22 0.00 0.00 2.85
4626 5413 1.474077 CCACCAAATCCAAGCTGTAGC 59.526 52.381 0.00 0.00 42.49 3.58
4676 5463 6.821665 TGTACAGCAGGTTTACATTCTAATCC 59.178 38.462 0.00 0.00 0.00 3.01
4840 5627 1.743772 GCGATATTCACAGCCCAGTGT 60.744 52.381 0.00 0.00 40.37 3.55
4972 5759 0.669619 CATTGCTGCACAACCAGTCA 59.330 50.000 0.00 0.00 42.27 3.41
5077 5864 0.994247 ATGATGACCCTGTTGAGCCA 59.006 50.000 0.00 0.00 0.00 4.75
5113 5900 0.107066 ATGTTGATCCATGCCTGCGA 60.107 50.000 0.00 0.00 0.00 5.10
5296 6083 0.334676 ACCTCTCAGTCAGCCTAGCT 59.665 55.000 0.00 0.00 40.77 3.32
5389 6176 1.131638 TGGCACTGGTTGTCTTCTCT 58.868 50.000 0.00 0.00 0.00 3.10
5410 6197 3.029564 GCGCGCAATTGACCGGTTA 62.030 57.895 29.10 0.00 0.00 2.85
5422 6209 0.672401 ACCGGTTAGCCATTGTCACG 60.672 55.000 0.00 0.00 34.09 4.35
5518 6305 0.315251 TCGAACACCTCTGCTCTGTG 59.685 55.000 0.00 0.00 36.11 3.66
5695 6482 3.781307 TTCCATGTCGGGCTCGGG 61.781 66.667 5.94 0.00 36.95 5.14
5731 6518 3.181503 ACAGCTTCGTGATGCATGAATTC 60.182 43.478 2.46 0.00 38.47 2.17
6329 7117 1.604604 TTTCTTTCTGCCCTTGTCCG 58.395 50.000 0.00 0.00 0.00 4.79
6340 7128 0.248866 CCTTGTCCGGTGTGTTTTGC 60.249 55.000 0.00 0.00 0.00 3.68
6341 7129 0.738389 CTTGTCCGGTGTGTTTTGCT 59.262 50.000 0.00 0.00 0.00 3.91
6367 7155 8.815141 TTTGTGTGTATGGATCAAATGAAAAG 57.185 30.769 0.00 0.00 0.00 2.27
6446 7235 8.692110 ATGCAATGTATCTTTGTTGTTGTATG 57.308 30.769 0.00 0.00 0.00 2.39
6449 7238 7.410728 GCAATGTATCTTTGTTGTTGTATGTGC 60.411 37.037 0.00 0.00 0.00 4.57
6457 7249 4.397420 TGTTGTTGTATGTGCCAATCTCT 58.603 39.130 0.00 0.00 0.00 3.10
6465 7257 7.320443 TGTATGTGCCAATCTCTTAATTCAC 57.680 36.000 0.00 0.00 0.00 3.18
6510 7302 1.078497 CACCTGACATGCGCCCTTA 60.078 57.895 4.18 0.00 0.00 2.69
6534 7326 3.623060 GCCGATGTTTCAGTGTGTCATAT 59.377 43.478 0.00 0.00 0.00 1.78
6563 7355 3.725895 CGTGCATGAAATTCAACTCGAGG 60.726 47.826 18.41 0.00 30.39 4.63
6564 7356 2.749076 TGCATGAAATTCAACTCGAGGG 59.251 45.455 18.41 8.75 0.00 4.30
6637 7430 7.341445 ACAAGTTTAGTGCCACTATTTTGAA 57.659 32.000 20.76 6.29 29.64 2.69
6714 7507 5.772521 AGTGTTAAAGATGCACATTGTTCC 58.227 37.500 0.00 0.00 35.75 3.62
6757 7550 4.996434 ATATGCTCCTGCGCGCCC 62.996 66.667 30.77 12.03 43.34 6.13
6762 7555 3.669344 CTCCTGCGCGCCCAAAAA 61.669 61.111 30.77 7.64 0.00 1.94
6964 7761 7.078011 AGTTTTGTTCTCAGTCAAACTTCTC 57.922 36.000 0.00 0.00 34.05 2.87
7081 7879 6.091713 GGTGTTGCAGACGTTATAATACACTT 59.908 38.462 15.39 0.00 35.10 3.16
7082 7880 7.276218 GGTGTTGCAGACGTTATAATACACTTA 59.724 37.037 15.39 0.00 35.10 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.741856 CAGAGAGATGACTATGCATGTGC 59.258 47.826 10.16 0.00 42.50 4.57
4 5 5.197682 TCAGAGAGATGACTATGCATGTG 57.802 43.478 10.16 4.66 0.00 3.21
5 6 5.866159 TTCAGAGAGATGACTATGCATGT 57.134 39.130 10.16 5.42 0.00 3.21
6 7 5.120986 GCATTCAGAGAGATGACTATGCATG 59.879 44.000 10.16 1.82 40.64 4.06
7 8 5.221661 TGCATTCAGAGAGATGACTATGCAT 60.222 40.000 3.79 3.79 43.43 3.96
8 9 4.100498 TGCATTCAGAGAGATGACTATGCA 59.900 41.667 10.47 10.47 44.87 3.96
9 10 4.448395 GTGCATTCAGAGAGATGACTATGC 59.552 45.833 0.00 0.00 41.03 3.14
10 11 4.680567 CGTGCATTCAGAGAGATGACTATG 59.319 45.833 0.00 0.00 0.00 2.23
11 12 4.795635 GCGTGCATTCAGAGAGATGACTAT 60.796 45.833 0.00 0.00 0.00 2.12
12 13 3.489908 GCGTGCATTCAGAGAGATGACTA 60.490 47.826 0.00 0.00 0.00 2.59
13 14 2.738000 GCGTGCATTCAGAGAGATGACT 60.738 50.000 0.00 0.00 0.00 3.41
14 15 1.592081 GCGTGCATTCAGAGAGATGAC 59.408 52.381 0.00 0.00 0.00 3.06
15 16 1.205417 TGCGTGCATTCAGAGAGATGA 59.795 47.619 0.00 0.00 0.00 2.92
16 17 1.648504 TGCGTGCATTCAGAGAGATG 58.351 50.000 0.00 0.00 0.00 2.90
17 18 2.210961 CATGCGTGCATTCAGAGAGAT 58.789 47.619 4.24 0.00 33.90 2.75
18 19 1.648504 CATGCGTGCATTCAGAGAGA 58.351 50.000 4.24 0.00 33.90 3.10
30 31 3.072211 AGAGATGGATTATGCATGCGTG 58.928 45.455 22.77 0.09 0.00 5.34
31 32 3.413846 AGAGATGGATTATGCATGCGT 57.586 42.857 18.07 18.07 0.00 5.24
32 33 4.092529 GTGTAGAGATGGATTATGCATGCG 59.907 45.833 14.09 0.00 0.00 4.73
33 34 4.394300 GGTGTAGAGATGGATTATGCATGC 59.606 45.833 11.82 11.82 0.00 4.06
34 35 5.802465 AGGTGTAGAGATGGATTATGCATG 58.198 41.667 10.16 0.00 0.00 4.06
35 36 6.445451 AAGGTGTAGAGATGGATTATGCAT 57.555 37.500 3.79 3.79 0.00 3.96
36 37 5.509670 CGAAGGTGTAGAGATGGATTATGCA 60.510 44.000 0.00 0.00 0.00 3.96
37 38 4.926238 CGAAGGTGTAGAGATGGATTATGC 59.074 45.833 0.00 0.00 0.00 3.14
38 39 6.207614 TCTCGAAGGTGTAGAGATGGATTATG 59.792 42.308 0.00 0.00 36.25 1.90
39 40 6.307776 TCTCGAAGGTGTAGAGATGGATTAT 58.692 40.000 0.00 0.00 36.25 1.28
40 41 5.691896 TCTCGAAGGTGTAGAGATGGATTA 58.308 41.667 0.00 0.00 36.25 1.75
41 42 4.537751 TCTCGAAGGTGTAGAGATGGATT 58.462 43.478 0.00 0.00 36.25 3.01
42 43 4.141287 CTCTCGAAGGTGTAGAGATGGAT 58.859 47.826 0.00 0.00 39.88 3.41
43 44 3.200165 TCTCTCGAAGGTGTAGAGATGGA 59.800 47.826 0.00 0.00 40.56 3.41
44 45 3.314080 GTCTCTCGAAGGTGTAGAGATGG 59.686 52.174 4.72 0.00 45.46 3.51
45 46 4.196193 AGTCTCTCGAAGGTGTAGAGATG 58.804 47.826 4.72 0.00 45.46 2.90
46 47 4.497291 AGTCTCTCGAAGGTGTAGAGAT 57.503 45.455 4.72 0.00 45.46 2.75
47 48 3.985019 AGTCTCTCGAAGGTGTAGAGA 57.015 47.619 0.00 0.00 42.60 3.10
48 49 4.573201 CCTTAGTCTCTCGAAGGTGTAGAG 59.427 50.000 0.00 0.00 41.78 2.43
49 50 4.515361 CCTTAGTCTCTCGAAGGTGTAGA 58.485 47.826 0.00 0.00 41.78 2.59
50 51 3.065648 GCCTTAGTCTCTCGAAGGTGTAG 59.934 52.174 8.12 0.00 46.18 2.74
51 52 3.015327 GCCTTAGTCTCTCGAAGGTGTA 58.985 50.000 8.12 0.00 46.18 2.90
52 53 1.819903 GCCTTAGTCTCTCGAAGGTGT 59.180 52.381 8.12 0.00 46.18 4.16
53 54 1.135333 GGCCTTAGTCTCTCGAAGGTG 59.865 57.143 0.00 0.00 46.18 4.00
54 55 1.476477 GGCCTTAGTCTCTCGAAGGT 58.524 55.000 0.00 0.00 46.18 3.50
55 56 0.747852 GGGCCTTAGTCTCTCGAAGG 59.252 60.000 0.84 3.11 46.85 3.46
56 57 1.407258 CAGGGCCTTAGTCTCTCGAAG 59.593 57.143 1.32 0.00 0.00 3.79
57 58 1.272536 ACAGGGCCTTAGTCTCTCGAA 60.273 52.381 1.32 0.00 0.00 3.71
58 59 0.331954 ACAGGGCCTTAGTCTCTCGA 59.668 55.000 1.32 0.00 0.00 4.04
59 60 1.187087 AACAGGGCCTTAGTCTCTCG 58.813 55.000 1.32 0.00 0.00 4.04
60 61 2.355209 CCAAACAGGGCCTTAGTCTCTC 60.355 54.545 1.32 0.00 0.00 3.20
61 62 1.630878 CCAAACAGGGCCTTAGTCTCT 59.369 52.381 1.32 0.00 0.00 3.10
62 63 1.351350 ACCAAACAGGGCCTTAGTCTC 59.649 52.381 1.32 0.00 43.89 3.36
63 64 1.446016 ACCAAACAGGGCCTTAGTCT 58.554 50.000 1.32 0.00 43.89 3.24
64 65 2.160205 GAACCAAACAGGGCCTTAGTC 58.840 52.381 1.32 0.00 43.89 2.59
65 66 1.544759 CGAACCAAACAGGGCCTTAGT 60.545 52.381 1.32 0.00 43.89 2.24
66 67 1.165270 CGAACCAAACAGGGCCTTAG 58.835 55.000 1.32 0.00 43.89 2.18
67 68 0.250989 CCGAACCAAACAGGGCCTTA 60.251 55.000 1.32 0.00 43.89 2.69
68 69 1.530655 CCGAACCAAACAGGGCCTT 60.531 57.895 1.32 0.00 43.89 4.35
69 70 2.115266 CCGAACCAAACAGGGCCT 59.885 61.111 0.00 0.00 43.89 5.19
70 71 3.680786 GCCGAACCAAACAGGGCC 61.681 66.667 0.00 0.00 43.89 5.80
71 72 2.597510 AGCCGAACCAAACAGGGC 60.598 61.111 0.00 0.00 43.89 5.19
72 73 1.528309 ACAGCCGAACCAAACAGGG 60.528 57.895 0.00 0.00 43.89 4.45
73 74 1.654220 CACAGCCGAACCAAACAGG 59.346 57.895 0.00 0.00 45.67 4.00
74 75 0.817634 TCCACAGCCGAACCAAACAG 60.818 55.000 0.00 0.00 0.00 3.16
75 76 0.179004 ATCCACAGCCGAACCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
76 77 0.958822 AATCCACAGCCGAACCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
77 78 1.611491 GAAATCCACAGCCGAACCAAA 59.389 47.619 0.00 0.00 0.00 3.28
78 79 1.202879 AGAAATCCACAGCCGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
79 80 0.400213 AGAAATCCACAGCCGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
80 81 2.396590 TAGAAATCCACAGCCGAACC 57.603 50.000 0.00 0.00 0.00 3.62
81 82 4.215613 ACTTTTAGAAATCCACAGCCGAAC 59.784 41.667 0.00 0.00 0.00 3.95
82 83 4.394729 ACTTTTAGAAATCCACAGCCGAA 58.605 39.130 0.00 0.00 0.00 4.30
83 84 4.015872 ACTTTTAGAAATCCACAGCCGA 57.984 40.909 0.00 0.00 0.00 5.54
84 85 4.201822 GCTACTTTTAGAAATCCACAGCCG 60.202 45.833 0.00 0.00 0.00 5.52
85 86 4.944317 AGCTACTTTTAGAAATCCACAGCC 59.056 41.667 0.00 0.00 0.00 4.85
86 87 5.412904 ACAGCTACTTTTAGAAATCCACAGC 59.587 40.000 0.00 0.00 0.00 4.40
87 88 6.650807 TCACAGCTACTTTTAGAAATCCACAG 59.349 38.462 0.00 0.00 0.00 3.66
88 89 6.530120 TCACAGCTACTTTTAGAAATCCACA 58.470 36.000 0.00 0.00 0.00 4.17
89 90 7.435068 TTCACAGCTACTTTTAGAAATCCAC 57.565 36.000 0.00 0.00 0.00 4.02
90 91 8.458573 TTTTCACAGCTACTTTTAGAAATCCA 57.541 30.769 0.00 0.00 0.00 3.41
91 92 9.914131 ATTTTTCACAGCTACTTTTAGAAATCC 57.086 29.630 0.00 0.00 0.00 3.01
94 95 9.950680 CAGATTTTTCACAGCTACTTTTAGAAA 57.049 29.630 0.00 0.00 0.00 2.52
95 96 8.076178 GCAGATTTTTCACAGCTACTTTTAGAA 58.924 33.333 0.00 0.00 0.00 2.10
96 97 7.445402 AGCAGATTTTTCACAGCTACTTTTAGA 59.555 33.333 0.00 0.00 0.00 2.10
97 98 7.536622 CAGCAGATTTTTCACAGCTACTTTTAG 59.463 37.037 0.00 0.00 0.00 1.85
98 99 7.013274 ACAGCAGATTTTTCACAGCTACTTTTA 59.987 33.333 0.00 0.00 0.00 1.52
99 100 6.183360 ACAGCAGATTTTTCACAGCTACTTTT 60.183 34.615 0.00 0.00 0.00 2.27
100 101 5.300286 ACAGCAGATTTTTCACAGCTACTTT 59.700 36.000 0.00 0.00 0.00 2.66
101 102 4.823989 ACAGCAGATTTTTCACAGCTACTT 59.176 37.500 0.00 0.00 0.00 2.24
102 103 4.214971 CACAGCAGATTTTTCACAGCTACT 59.785 41.667 0.00 0.00 0.00 2.57
103 104 4.470462 CACAGCAGATTTTTCACAGCTAC 58.530 43.478 0.00 0.00 0.00 3.58
104 105 3.503363 CCACAGCAGATTTTTCACAGCTA 59.497 43.478 0.00 0.00 0.00 3.32
105 106 2.295349 CCACAGCAGATTTTTCACAGCT 59.705 45.455 0.00 0.00 0.00 4.24
106 107 2.294233 TCCACAGCAGATTTTTCACAGC 59.706 45.455 0.00 0.00 0.00 4.40
107 108 4.572985 TTCCACAGCAGATTTTTCACAG 57.427 40.909 0.00 0.00 0.00 3.66
108 109 4.998671 TTTCCACAGCAGATTTTTCACA 57.001 36.364 0.00 0.00 0.00 3.58
109 110 6.145048 CAGATTTTCCACAGCAGATTTTTCAC 59.855 38.462 0.00 0.00 0.00 3.18
110 111 6.040729 TCAGATTTTCCACAGCAGATTTTTCA 59.959 34.615 0.00 0.00 0.00 2.69
111 112 6.449698 TCAGATTTTCCACAGCAGATTTTTC 58.550 36.000 0.00 0.00 0.00 2.29
112 113 6.409524 TCAGATTTTCCACAGCAGATTTTT 57.590 33.333 0.00 0.00 0.00 1.94
113 114 6.600882 ATCAGATTTTCCACAGCAGATTTT 57.399 33.333 0.00 0.00 0.00 1.82
114 115 7.558807 TCATATCAGATTTTCCACAGCAGATTT 59.441 33.333 0.00 0.00 0.00 2.17
115 116 7.058525 TCATATCAGATTTTCCACAGCAGATT 58.941 34.615 0.00 0.00 0.00 2.40
116 117 6.598503 TCATATCAGATTTTCCACAGCAGAT 58.401 36.000 0.00 0.00 0.00 2.90
117 118 5.993055 TCATATCAGATTTTCCACAGCAGA 58.007 37.500 0.00 0.00 0.00 4.26
118 119 6.688637 TTCATATCAGATTTTCCACAGCAG 57.311 37.500 0.00 0.00 0.00 4.24
119 120 7.465353 TTTTCATATCAGATTTTCCACAGCA 57.535 32.000 0.00 0.00 0.00 4.41
120 121 8.246180 TCTTTTTCATATCAGATTTTCCACAGC 58.754 33.333 0.00 0.00 0.00 4.40
134 135 9.956720 CCAAATGACCTACATCTTTTTCATATC 57.043 33.333 0.00 0.00 38.38 1.63
135 136 8.416329 GCCAAATGACCTACATCTTTTTCATAT 58.584 33.333 0.00 0.00 38.38 1.78
136 137 7.395772 TGCCAAATGACCTACATCTTTTTCATA 59.604 33.333 0.00 0.00 38.38 2.15
137 138 6.211184 TGCCAAATGACCTACATCTTTTTCAT 59.789 34.615 0.00 0.00 38.38 2.57
138 139 5.538053 TGCCAAATGACCTACATCTTTTTCA 59.462 36.000 0.00 0.00 38.38 2.69
139 140 6.024552 TGCCAAATGACCTACATCTTTTTC 57.975 37.500 0.00 0.00 38.38 2.29
140 141 6.418057 TTGCCAAATGACCTACATCTTTTT 57.582 33.333 0.00 0.00 38.38 1.94
141 142 6.041979 AGTTTGCCAAATGACCTACATCTTTT 59.958 34.615 0.00 0.00 38.38 2.27
142 143 5.539955 AGTTTGCCAAATGACCTACATCTTT 59.460 36.000 0.00 0.00 38.38 2.52
143 144 5.079643 AGTTTGCCAAATGACCTACATCTT 58.920 37.500 0.00 0.00 38.38 2.40
144 145 4.666512 AGTTTGCCAAATGACCTACATCT 58.333 39.130 0.00 0.00 38.38 2.90
145 146 5.449177 GCTAGTTTGCCAAATGACCTACATC 60.449 44.000 0.00 0.00 38.38 3.06
146 147 4.399303 GCTAGTTTGCCAAATGACCTACAT 59.601 41.667 0.00 0.00 41.45 2.29
147 148 3.756434 GCTAGTTTGCCAAATGACCTACA 59.244 43.478 0.00 0.00 0.00 2.74
148 149 4.010349 AGCTAGTTTGCCAAATGACCTAC 58.990 43.478 0.00 0.00 0.00 3.18
149 150 4.009675 CAGCTAGTTTGCCAAATGACCTA 58.990 43.478 0.00 0.00 0.00 3.08
150 151 2.821969 CAGCTAGTTTGCCAAATGACCT 59.178 45.455 0.00 0.00 0.00 3.85
151 152 2.819608 TCAGCTAGTTTGCCAAATGACC 59.180 45.455 0.00 0.00 0.00 4.02
152 153 4.708726 ATCAGCTAGTTTGCCAAATGAC 57.291 40.909 0.00 0.00 0.00 3.06
153 154 5.252547 TGTATCAGCTAGTTTGCCAAATGA 58.747 37.500 0.00 0.00 0.00 2.57
154 155 5.565592 TGTATCAGCTAGTTTGCCAAATG 57.434 39.130 0.00 0.00 0.00 2.32
155 156 5.824904 CTGTATCAGCTAGTTTGCCAAAT 57.175 39.130 0.00 0.00 0.00 2.32
169 170 6.309737 GCCAAAATCTGAAAAAGCTGTATCAG 59.690 38.462 13.84 13.84 40.46 2.90
170 171 6.158598 GCCAAAATCTGAAAAAGCTGTATCA 58.841 36.000 0.00 0.00 0.00 2.15
171 172 5.578336 GGCCAAAATCTGAAAAAGCTGTATC 59.422 40.000 0.00 0.00 0.00 2.24
172 173 5.482006 GGCCAAAATCTGAAAAAGCTGTAT 58.518 37.500 0.00 0.00 0.00 2.29
173 174 4.262420 GGGCCAAAATCTGAAAAAGCTGTA 60.262 41.667 4.39 0.00 0.00 2.74
174 175 3.494924 GGGCCAAAATCTGAAAAAGCTGT 60.495 43.478 4.39 0.00 0.00 4.40
175 176 3.069289 GGGCCAAAATCTGAAAAAGCTG 58.931 45.455 4.39 0.00 0.00 4.24
176 177 2.289010 CGGGCCAAAATCTGAAAAAGCT 60.289 45.455 4.39 0.00 0.00 3.74
177 178 2.068519 CGGGCCAAAATCTGAAAAAGC 58.931 47.619 4.39 0.00 0.00 3.51
178 179 2.068519 GCGGGCCAAAATCTGAAAAAG 58.931 47.619 4.39 0.00 0.00 2.27
179 180 1.414181 TGCGGGCCAAAATCTGAAAAA 59.586 42.857 4.39 0.00 0.00 1.94
180 181 1.000731 CTGCGGGCCAAAATCTGAAAA 59.999 47.619 4.39 0.00 0.00 2.29
181 182 0.602562 CTGCGGGCCAAAATCTGAAA 59.397 50.000 4.39 0.00 0.00 2.69
182 183 1.876497 GCTGCGGGCCAAAATCTGAA 61.876 55.000 4.39 0.00 34.27 3.02
183 184 2.342650 GCTGCGGGCCAAAATCTGA 61.343 57.895 4.39 0.00 34.27 3.27
184 185 2.182537 GCTGCGGGCCAAAATCTG 59.817 61.111 4.39 0.00 34.27 2.90
185 186 3.443045 CGCTGCGGGCCAAAATCT 61.443 61.111 15.40 0.00 37.74 2.40
186 187 4.496927 CCGCTGCGGGCCAAAATC 62.497 66.667 32.37 0.00 44.15 2.17
196 197 2.354510 TCCAAAATCTAATTCCGCTGCG 59.645 45.455 16.34 16.34 0.00 5.18
197 198 4.370364 TTCCAAAATCTAATTCCGCTGC 57.630 40.909 0.00 0.00 0.00 5.25
198 199 5.289434 GCTTTTCCAAAATCTAATTCCGCTG 59.711 40.000 0.00 0.00 0.00 5.18
199 200 5.047377 TGCTTTTCCAAAATCTAATTCCGCT 60.047 36.000 0.00 0.00 0.00 5.52
200 201 5.062183 GTGCTTTTCCAAAATCTAATTCCGC 59.938 40.000 0.00 0.00 0.00 5.54
201 202 6.389906 AGTGCTTTTCCAAAATCTAATTCCG 58.610 36.000 0.00 0.00 0.00 4.30
202 203 7.331934 GGAAGTGCTTTTCCAAAATCTAATTCC 59.668 37.037 12.98 0.00 44.90 3.01
203 204 8.244494 GGAAGTGCTTTTCCAAAATCTAATTC 57.756 34.615 12.98 0.00 44.90 2.17
215 216 0.540597 AGCCCAGGAAGTGCTTTTCC 60.541 55.000 10.67 10.67 45.71 3.13
216 217 0.600057 CAGCCCAGGAAGTGCTTTTC 59.400 55.000 0.00 0.00 31.77 2.29
217 218 1.466851 GCAGCCCAGGAAGTGCTTTT 61.467 55.000 0.00 0.00 31.77 2.27
218 219 1.905354 GCAGCCCAGGAAGTGCTTT 60.905 57.895 0.00 0.00 31.77 3.51
219 220 2.282745 GCAGCCCAGGAAGTGCTT 60.283 61.111 0.00 0.00 31.77 3.91
220 221 3.255397 AGCAGCCCAGGAAGTGCT 61.255 61.111 4.69 4.69 41.47 4.40
221 222 2.282745 AAGCAGCCCAGGAAGTGC 60.283 61.111 0.00 0.00 36.10 4.40
222 223 1.676967 GGAAGCAGCCCAGGAAGTG 60.677 63.158 0.00 0.00 0.00 3.16
223 224 2.759795 GGAAGCAGCCCAGGAAGT 59.240 61.111 0.00 0.00 0.00 3.01
224 225 2.437359 CGGAAGCAGCCCAGGAAG 60.437 66.667 0.00 0.00 0.00 3.46
236 237 3.923017 AATCTGAACCAAAAGCGGAAG 57.077 42.857 0.00 0.00 0.00 3.46
237 238 4.367450 CAAAATCTGAACCAAAAGCGGAA 58.633 39.130 0.00 0.00 0.00 4.30
238 239 3.243704 CCAAAATCTGAACCAAAAGCGGA 60.244 43.478 0.00 0.00 0.00 5.54
239 240 3.059166 CCAAAATCTGAACCAAAAGCGG 58.941 45.455 0.00 0.00 0.00 5.52
240 241 2.476241 GCCAAAATCTGAACCAAAAGCG 59.524 45.455 0.00 0.00 0.00 4.68
241 242 3.465871 TGCCAAAATCTGAACCAAAAGC 58.534 40.909 0.00 0.00 0.00 3.51
242 243 3.495753 GCTGCCAAAATCTGAACCAAAAG 59.504 43.478 0.00 0.00 0.00 2.27
243 244 3.465871 GCTGCCAAAATCTGAACCAAAA 58.534 40.909 0.00 0.00 0.00 2.44
244 245 2.545532 CGCTGCCAAAATCTGAACCAAA 60.546 45.455 0.00 0.00 0.00 3.28
245 246 1.000385 CGCTGCCAAAATCTGAACCAA 60.000 47.619 0.00 0.00 0.00 3.67
246 247 0.597568 CGCTGCCAAAATCTGAACCA 59.402 50.000 0.00 0.00 0.00 3.67
247 248 0.109132 CCGCTGCCAAAATCTGAACC 60.109 55.000 0.00 0.00 0.00 3.62
248 249 0.881118 TCCGCTGCCAAAATCTGAAC 59.119 50.000 0.00 0.00 0.00 3.18
249 250 1.838112 ATCCGCTGCCAAAATCTGAA 58.162 45.000 0.00 0.00 0.00 3.02
250 251 1.838112 AATCCGCTGCCAAAATCTGA 58.162 45.000 0.00 0.00 0.00 3.27
251 252 2.094597 TGAAATCCGCTGCCAAAATCTG 60.095 45.455 0.00 0.00 0.00 2.90
252 253 2.165030 CTGAAATCCGCTGCCAAAATCT 59.835 45.455 0.00 0.00 0.00 2.40
253 254 2.533266 CTGAAATCCGCTGCCAAAATC 58.467 47.619 0.00 0.00 0.00 2.17
254 255 1.205417 CCTGAAATCCGCTGCCAAAAT 59.795 47.619 0.00 0.00 0.00 1.82
255 256 0.602562 CCTGAAATCCGCTGCCAAAA 59.397 50.000 0.00 0.00 0.00 2.44
256 257 0.251121 TCCTGAAATCCGCTGCCAAA 60.251 50.000 0.00 0.00 0.00 3.28
257 258 0.251121 TTCCTGAAATCCGCTGCCAA 60.251 50.000 0.00 0.00 0.00 4.52
258 259 0.034186 ATTCCTGAAATCCGCTGCCA 60.034 50.000 0.00 0.00 0.00 4.92
259 260 0.665298 GATTCCTGAAATCCGCTGCC 59.335 55.000 0.00 0.00 38.27 4.85
260 261 0.305922 CGATTCCTGAAATCCGCTGC 59.694 55.000 0.00 0.00 40.69 5.25
261 262 0.940126 CCGATTCCTGAAATCCGCTG 59.060 55.000 0.00 0.00 40.69 5.18
262 263 0.830648 TCCGATTCCTGAAATCCGCT 59.169 50.000 0.00 0.00 40.69 5.52
263 264 1.884235 ATCCGATTCCTGAAATCCGC 58.116 50.000 0.00 0.00 40.69 5.54
264 265 3.496130 CAGAATCCGATTCCTGAAATCCG 59.504 47.826 16.09 0.00 40.69 4.18
265 266 3.251972 GCAGAATCCGATTCCTGAAATCC 59.748 47.826 16.09 0.64 40.69 3.01
266 267 4.024218 CAGCAGAATCCGATTCCTGAAATC 60.024 45.833 16.09 3.80 40.13 2.17
267 268 3.881688 CAGCAGAATCCGATTCCTGAAAT 59.118 43.478 16.09 0.00 40.13 2.17
268 269 3.273434 CAGCAGAATCCGATTCCTGAAA 58.727 45.455 16.09 0.00 40.13 2.69
269 270 2.420547 CCAGCAGAATCCGATTCCTGAA 60.421 50.000 20.51 0.00 40.13 3.02
270 271 1.139654 CCAGCAGAATCCGATTCCTGA 59.860 52.381 20.51 0.00 40.13 3.86
271 272 1.590932 CCAGCAGAATCCGATTCCTG 58.409 55.000 16.09 15.68 40.13 3.86
272 273 0.471617 CCCAGCAGAATCCGATTCCT 59.528 55.000 16.09 5.91 40.13 3.36
273 274 0.181350 ACCCAGCAGAATCCGATTCC 59.819 55.000 16.09 3.83 40.13 3.01
274 275 1.943340 GAACCCAGCAGAATCCGATTC 59.057 52.381 12.51 12.51 39.56 2.52
275 276 1.743772 CGAACCCAGCAGAATCCGATT 60.744 52.381 0.00 0.00 0.00 3.34
276 277 0.179073 CGAACCCAGCAGAATCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
277 278 1.218047 CGAACCCAGCAGAATCCGA 59.782 57.895 0.00 0.00 0.00 4.55
278 279 2.464459 GCGAACCCAGCAGAATCCG 61.464 63.158 0.00 0.00 34.19 4.18
279 280 2.115291 GGCGAACCCAGCAGAATCC 61.115 63.158 0.00 0.00 36.08 3.01
280 281 3.502572 GGCGAACCCAGCAGAATC 58.497 61.111 0.00 0.00 36.08 2.52
290 291 0.536460 TCTGAACCAAAGGGCGAACC 60.536 55.000 0.00 0.00 37.90 3.62
291 292 1.534729 ATCTGAACCAAAGGGCGAAC 58.465 50.000 0.00 0.00 37.90 3.95
292 293 2.159382 GAATCTGAACCAAAGGGCGAA 58.841 47.619 0.00 0.00 37.90 4.70
293 294 1.351017 AGAATCTGAACCAAAGGGCGA 59.649 47.619 0.00 0.00 37.90 5.54
294 295 1.470098 CAGAATCTGAACCAAAGGGCG 59.530 52.381 3.77 0.00 33.00 6.13
295 296 1.203287 GCAGAATCTGAACCAAAGGGC 59.797 52.381 15.38 0.00 33.00 5.19
296 297 2.490903 CAGCAGAATCTGAACCAAAGGG 59.509 50.000 15.38 0.00 36.19 3.95
297 298 2.094854 GCAGCAGAATCTGAACCAAAGG 60.095 50.000 15.38 0.00 36.19 3.11
298 299 2.413765 CGCAGCAGAATCTGAACCAAAG 60.414 50.000 15.38 0.00 36.19 2.77
299 300 1.536766 CGCAGCAGAATCTGAACCAAA 59.463 47.619 15.38 0.00 36.19 3.28
300 301 1.159285 CGCAGCAGAATCTGAACCAA 58.841 50.000 15.38 0.00 36.19 3.67
301 302 2.845019 CGCAGCAGAATCTGAACCA 58.155 52.632 15.38 0.00 36.19 3.67
315 316 2.395690 GATTCCGTTGTCGCGCAG 59.604 61.111 8.75 0.00 35.54 5.18
316 317 3.115892 GGATTCCGTTGTCGCGCA 61.116 61.111 8.75 0.00 35.54 6.09
317 318 4.204891 CGGATTCCGTTGTCGCGC 62.205 66.667 17.08 0.00 42.73 6.86
327 328 3.454375 TCAGCTTTTATCGACGGATTCC 58.546 45.455 0.00 0.00 34.00 3.01
328 329 4.260253 GGTTCAGCTTTTATCGACGGATTC 60.260 45.833 0.00 0.00 34.00 2.52
329 330 3.621715 GGTTCAGCTTTTATCGACGGATT 59.378 43.478 0.00 0.00 34.00 3.01
330 331 3.195661 GGTTCAGCTTTTATCGACGGAT 58.804 45.455 0.00 0.00 36.65 4.18
331 332 2.028839 TGGTTCAGCTTTTATCGACGGA 60.029 45.455 0.00 0.00 0.00 4.69
332 333 2.343101 TGGTTCAGCTTTTATCGACGG 58.657 47.619 0.00 0.00 0.00 4.79
333 334 4.148891 GTTTGGTTCAGCTTTTATCGACG 58.851 43.478 0.00 0.00 0.00 5.12
334 335 5.103290 TGTTTGGTTCAGCTTTTATCGAC 57.897 39.130 0.00 0.00 0.00 4.20
335 336 4.215399 CCTGTTTGGTTCAGCTTTTATCGA 59.785 41.667 0.00 0.00 0.00 3.59
336 337 4.475944 CCTGTTTGGTTCAGCTTTTATCG 58.524 43.478 0.00 0.00 0.00 2.92
337 338 4.809673 CCCTGTTTGGTTCAGCTTTTATC 58.190 43.478 0.00 0.00 0.00 1.75
338 339 3.006859 GCCCTGTTTGGTTCAGCTTTTAT 59.993 43.478 0.00 0.00 0.00 1.40
339 340 2.364002 GCCCTGTTTGGTTCAGCTTTTA 59.636 45.455 0.00 0.00 0.00 1.52
340 341 1.138859 GCCCTGTTTGGTTCAGCTTTT 59.861 47.619 0.00 0.00 0.00 2.27
341 342 0.752658 GCCCTGTTTGGTTCAGCTTT 59.247 50.000 0.00 0.00 0.00 3.51
342 343 1.115326 GGCCCTGTTTGGTTCAGCTT 61.115 55.000 0.00 0.00 0.00 3.74
343 344 1.531602 GGCCCTGTTTGGTTCAGCT 60.532 57.895 0.00 0.00 0.00 4.24
344 345 0.251165 TAGGCCCTGTTTGGTTCAGC 60.251 55.000 0.00 0.00 0.00 4.26
345 346 2.162681 CTTAGGCCCTGTTTGGTTCAG 58.837 52.381 0.00 0.00 0.00 3.02
346 347 1.821666 GCTTAGGCCCTGTTTGGTTCA 60.822 52.381 0.00 0.00 0.00 3.18
347 348 0.888619 GCTTAGGCCCTGTTTGGTTC 59.111 55.000 0.00 0.00 0.00 3.62
348 349 3.051617 GCTTAGGCCCTGTTTGGTT 57.948 52.632 0.00 0.00 0.00 3.67
349 350 4.843624 GCTTAGGCCCTGTTTGGT 57.156 55.556 0.00 0.00 0.00 3.67
359 360 1.687123 TCAAGATCTACCGGCTTAGGC 59.313 52.381 0.00 0.00 37.82 3.93
360 361 3.223435 TCTCAAGATCTACCGGCTTAGG 58.777 50.000 0.00 0.00 37.30 2.69
361 362 4.378978 CGATCTCAAGATCTACCGGCTTAG 60.379 50.000 15.96 0.00 46.58 2.18
362 363 3.502595 CGATCTCAAGATCTACCGGCTTA 59.497 47.826 15.96 0.00 46.58 3.09
363 364 2.294791 CGATCTCAAGATCTACCGGCTT 59.705 50.000 15.96 0.00 46.58 4.35
480 485 8.331289 CAAAAGGCTTGAATTTTGGAGGAAACT 61.331 37.037 0.00 0.00 40.87 2.66
507 512 4.737353 GCAAAAGGCTTCAATTTTGGAG 57.263 40.909 0.00 0.00 43.42 3.86
520 525 1.536766 GGCAATTTTGGAGCAAAAGGC 59.463 47.619 1.54 1.54 44.72 4.35
521 526 2.809696 CTGGCAATTTTGGAGCAAAAGG 59.190 45.455 0.00 0.00 44.72 3.11
751 760 1.599518 TGCTTTAGCGGTGGGTGTG 60.600 57.895 0.00 0.00 45.83 3.82
752 761 1.599797 GTGCTTTAGCGGTGGGTGT 60.600 57.895 0.00 0.00 45.83 4.16
829 838 2.511600 GGAATGGCCTCCGACACG 60.512 66.667 3.32 0.00 0.00 4.49
842 864 3.317406 AGCCCTTGGAAAACAAAGGAAT 58.683 40.909 5.10 0.00 42.28 3.01
895 917 2.292569 AGCAGAGTTGACAATTGCAGTG 59.707 45.455 18.41 0.00 37.24 3.66
930 952 1.071699 CCCTCTCTCTCCGTCTCCTAG 59.928 61.905 0.00 0.00 0.00 3.02
932 954 0.917333 ACCCTCTCTCTCCGTCTCCT 60.917 60.000 0.00 0.00 0.00 3.69
934 956 2.105134 TCATACCCTCTCTCTCCGTCTC 59.895 54.545 0.00 0.00 0.00 3.36
935 957 2.128535 TCATACCCTCTCTCTCCGTCT 58.871 52.381 0.00 0.00 0.00 4.18
936 958 2.223745 GTCATACCCTCTCTCTCCGTC 58.776 57.143 0.00 0.00 0.00 4.79
937 959 1.133730 GGTCATACCCTCTCTCTCCGT 60.134 57.143 0.00 0.00 30.04 4.69
939 961 2.757894 TGGTCATACCCTCTCTCTCC 57.242 55.000 0.00 0.00 37.50 3.71
949 972 1.774254 TGGGGTCATCATGGTCATACC 59.226 52.381 0.00 0.00 39.22 2.73
951 974 3.072915 GTCATGGGGTCATCATGGTCATA 59.927 47.826 0.00 0.00 41.51 2.15
952 975 2.137702 TCATGGGGTCATCATGGTCAT 58.862 47.619 0.00 0.00 41.51 3.06
953 976 1.212688 GTCATGGGGTCATCATGGTCA 59.787 52.381 0.00 0.00 41.51 4.02
956 979 0.535780 CCGTCATGGGGTCATCATGG 60.536 60.000 0.00 0.00 41.51 3.66
957 980 1.168407 GCCGTCATGGGGTCATCATG 61.168 60.000 5.74 0.00 42.28 3.07
1053 1076 4.157246 TGTTTCTTGCTGTCCTAGTCCTA 58.843 43.478 0.00 0.00 0.00 2.94
1054 1077 2.972713 TGTTTCTTGCTGTCCTAGTCCT 59.027 45.455 0.00 0.00 0.00 3.85
1055 1078 3.330267 CTGTTTCTTGCTGTCCTAGTCC 58.670 50.000 0.00 0.00 0.00 3.85
1056 1079 3.330267 CCTGTTTCTTGCTGTCCTAGTC 58.670 50.000 0.00 0.00 0.00 2.59
1057 1080 2.039084 CCCTGTTTCTTGCTGTCCTAGT 59.961 50.000 0.00 0.00 0.00 2.57
1058 1081 2.704572 CCCTGTTTCTTGCTGTCCTAG 58.295 52.381 0.00 0.00 0.00 3.02
1268 1293 2.563179 TGTCGAAAAAGAGAGGGAGAGG 59.437 50.000 0.00 0.00 0.00 3.69
1280 1305 7.930217 AGTTTCTCTGATGAAATGTCGAAAAA 58.070 30.769 0.00 0.00 38.09 1.94
1281 1306 7.442364 AGAGTTTCTCTGATGAAATGTCGAAAA 59.558 33.333 0.00 0.00 39.62 2.29
1283 1308 6.459066 AGAGTTTCTCTGATGAAATGTCGAA 58.541 36.000 0.00 0.00 39.62 3.71
1286 1311 9.392021 GAAAAAGAGTTTCTCTGATGAAATGTC 57.608 33.333 0.00 6.35 40.28 3.06
1400 1440 2.695666 AGAGAGAGAGAGAGAGAGACCG 59.304 54.545 0.00 0.00 0.00 4.79
1418 1463 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1419 1464 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1420 1465 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1421 1466 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1422 1467 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1423 1468 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1424 1469 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1425 1470 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1426 1471 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1427 1472 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1428 1473 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1429 1474 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1430 1475 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1431 1476 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1432 1477 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1433 1478 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1434 1479 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
1435 1480 4.646945 GTGAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
1436 1481 4.498850 CGTGAGAGAGAGAGAGAGAGAGAG 60.499 54.167 0.00 0.00 0.00 3.20
1437 1482 3.381590 CGTGAGAGAGAGAGAGAGAGAGA 59.618 52.174 0.00 0.00 0.00 3.10
1438 1483 3.131223 ACGTGAGAGAGAGAGAGAGAGAG 59.869 52.174 0.00 0.00 0.00 3.20
1439 1484 3.096852 ACGTGAGAGAGAGAGAGAGAGA 58.903 50.000 0.00 0.00 0.00 3.10
1440 1485 3.119137 TGACGTGAGAGAGAGAGAGAGAG 60.119 52.174 0.00 0.00 0.00 3.20
1441 1486 2.829120 TGACGTGAGAGAGAGAGAGAGA 59.171 50.000 0.00 0.00 0.00 3.10
1442 1487 3.190079 CTGACGTGAGAGAGAGAGAGAG 58.810 54.545 0.00 0.00 0.00 3.20
1443 1488 2.565391 ACTGACGTGAGAGAGAGAGAGA 59.435 50.000 9.65 0.00 0.00 3.10
1444 1489 2.972625 ACTGACGTGAGAGAGAGAGAG 58.027 52.381 9.65 0.00 0.00 3.20
1445 1490 4.500127 CTTACTGACGTGAGAGAGAGAGA 58.500 47.826 9.65 0.00 0.00 3.10
1446 1491 3.063452 GCTTACTGACGTGAGAGAGAGAG 59.937 52.174 9.65 0.00 0.00 3.20
1447 1492 3.004171 GCTTACTGACGTGAGAGAGAGA 58.996 50.000 9.65 0.00 0.00 3.10
1448 1493 2.744741 TGCTTACTGACGTGAGAGAGAG 59.255 50.000 9.65 1.99 0.00 3.20
1449 1494 2.744741 CTGCTTACTGACGTGAGAGAGA 59.255 50.000 9.65 0.00 0.00 3.10
1450 1495 2.159448 CCTGCTTACTGACGTGAGAGAG 60.159 54.545 9.65 7.02 0.00 3.20
1451 1496 1.813178 CCTGCTTACTGACGTGAGAGA 59.187 52.381 9.65 0.00 0.00 3.10
1452 1497 1.734047 GCCTGCTTACTGACGTGAGAG 60.734 57.143 9.65 0.00 0.00 3.20
1453 1498 0.243907 GCCTGCTTACTGACGTGAGA 59.756 55.000 9.65 0.00 0.00 3.27
1454 1499 1.073216 CGCCTGCTTACTGACGTGAG 61.073 60.000 0.00 0.00 0.00 3.51
1455 1500 1.080772 CGCCTGCTTACTGACGTGA 60.081 57.895 0.00 0.00 0.00 4.35
1515 1567 1.766496 AGAAAGAACGGAGGACACCAA 59.234 47.619 0.00 0.00 0.00 3.67
1525 1577 4.377431 CCGTTGAGATTTGAGAAAGAACGG 60.377 45.833 0.00 0.00 45.89 4.44
1575 1628 0.613777 ACCGAAACCAGCTAGGAAGG 59.386 55.000 8.91 0.00 41.22 3.46
1609 1664 1.133407 ACCGAGCTTCGTCAGAGATTC 59.867 52.381 0.00 0.00 38.40 2.52
1613 1668 2.631418 TTTACCGAGCTTCGTCAGAG 57.369 50.000 0.00 0.00 38.40 3.35
1627 1682 7.502696 ACTTGGTTAAAACTTGGGAATTTACC 58.497 34.615 0.00 0.00 0.00 2.85
1653 1708 1.421485 GCGTGCTCCTGTTGATTCG 59.579 57.895 0.00 0.00 0.00 3.34
1692 1751 1.134907 ACGCGGTACTGTTGGAATAGG 60.135 52.381 12.47 0.00 0.00 2.57
1693 1752 1.924524 CACGCGGTACTGTTGGAATAG 59.075 52.381 12.47 0.00 0.00 1.73
1694 1753 1.999048 CACGCGGTACTGTTGGAATA 58.001 50.000 12.47 0.00 0.00 1.75
1811 1870 1.426041 GGTACGTCGGATGCGCAAAT 61.426 55.000 17.11 0.00 0.00 2.32
1949 2010 4.006319 GGACCAAAGATTCAGAGAACTGG 58.994 47.826 0.00 0.00 43.60 4.00
2085 2146 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
2086 2147 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
2087 2148 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2088 2149 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2215 2327 0.521291 GCTGAAACATTAGCACCGCA 59.479 50.000 0.00 0.00 39.67 5.69
2255 2367 3.621268 CCAACAACCCATGTAGTACATCG 59.379 47.826 13.00 6.86 42.99 3.84
2823 2945 4.203226 TCAGTTTGTTGCAACCTGATACA 58.797 39.130 26.14 3.88 0.00 2.29
2824 2946 4.515191 TCTCAGTTTGTTGCAACCTGATAC 59.485 41.667 26.77 17.61 0.00 2.24
2862 2984 7.251195 TCTCCTACCCTAAGTTCTCCTTTTAA 58.749 38.462 0.00 0.00 34.46 1.52
2942 3064 5.238583 CGGAGGAAAGTGAGAACTTATTGT 58.761 41.667 0.00 0.00 0.00 2.71
2965 3087 5.220605 GCACCTAACATCACGATTTTCTACC 60.221 44.000 0.00 0.00 0.00 3.18
2981 3103 2.033602 ACCCCTTGCGCACCTAAC 59.966 61.111 11.12 0.00 0.00 2.34
2989 3112 1.308998 GTGATATTCCACCCCTTGCG 58.691 55.000 0.00 0.00 0.00 4.85
3081 3207 3.364889 TGGCAGATATAAGTCGGTTCG 57.635 47.619 0.00 0.00 0.00 3.95
3103 3229 6.543831 TCAGAAGTCTAGATCATCGTGAATCA 59.456 38.462 0.00 0.00 0.00 2.57
3111 3241 6.490040 AGCTAACCTCAGAAGTCTAGATCATC 59.510 42.308 0.00 0.00 0.00 2.92
3142 3272 4.987912 GCAAGACATAAGGCTGTAGAGATC 59.012 45.833 0.00 0.00 0.00 2.75
3152 3282 4.519540 TTTCCAAAGCAAGACATAAGGC 57.480 40.909 0.00 0.00 0.00 4.35
3200 3333 7.305474 CACTAAAGGAATTACAATCGCACTTT 58.695 34.615 0.00 0.00 0.00 2.66
3203 3336 5.028375 GCACTAAAGGAATTACAATCGCAC 58.972 41.667 0.00 0.00 0.00 5.34
3204 3337 4.697828 TGCACTAAAGGAATTACAATCGCA 59.302 37.500 0.00 0.00 0.00 5.10
3205 3338 5.028375 GTGCACTAAAGGAATTACAATCGC 58.972 41.667 10.32 0.00 0.00 4.58
3239 3373 8.893219 ATAGATATTATATTGTGGACCATGCG 57.107 34.615 0.00 0.00 0.00 4.73
3495 3641 2.930040 GTGCACAGTAACGACATATGCT 59.070 45.455 13.17 0.00 32.81 3.79
3533 3684 8.791675 TCTGTTATTCAAACAGTGCATTATTCA 58.208 29.630 15.37 0.00 45.75 2.57
3654 4039 1.512926 CGCCATATAGCACCAAGGTC 58.487 55.000 0.00 0.00 0.00 3.85
3831 4264 3.677963 CCATTCAGGCCCTGACTTT 57.322 52.632 14.43 0.00 40.46 2.66
3857 4290 1.376942 CAAGCCTCACAGGGAGCTG 60.377 63.158 0.00 0.00 42.62 4.24
3916 4349 8.228206 ACAGAATACCAACTAGAGGAGATATCA 58.772 37.037 5.32 0.00 0.00 2.15
3943 4376 9.305555 TGTTAGATACCAACTCAACTACTACTT 57.694 33.333 0.00 0.00 0.00 2.24
3975 4643 6.154445 TGAAGAACAGTGTTAAGTATCGACC 58.846 40.000 8.88 0.00 0.00 4.79
4028 4696 2.096268 TGCGCAAAACAATTCGAGAGAG 60.096 45.455 8.16 0.00 43.69 3.20
4047 4715 4.442350 GTTGAGATTGCAACAAAGTTGC 57.558 40.909 23.69 23.69 45.65 4.17
4158 4826 8.745837 CATTTATTTGGCTTATCAATTGTCGTC 58.254 33.333 5.13 0.00 0.00 4.20
4181 4849 9.593134 TTTGGCTTATTCGCAAAAATATACATT 57.407 25.926 0.00 0.00 30.23 2.71
4182 4850 9.762933 ATTTGGCTTATTCGCAAAAATATACAT 57.237 25.926 0.00 0.00 36.48 2.29
4233 4901 4.727507 AGAACACTGCCTCAGTACATAG 57.272 45.455 0.00 0.00 43.43 2.23
4239 4907 2.104792 TGCTTTAGAACACTGCCTCAGT 59.895 45.455 0.00 0.00 46.51 3.41
4458 5235 8.865978 GGAAATACCATTTTCGTAAATCCAAAC 58.134 33.333 0.00 0.00 36.63 2.93
4498 5284 5.867174 TCTGCTTCATTTGATGCTTCAATTG 59.133 36.000 21.98 21.98 41.38 2.32
4626 5413 9.855361 CATACAAGTAAGCAATAAAGAGAATCG 57.145 33.333 0.00 0.00 42.67 3.34
4676 5463 4.701765 AGATCTGAGAAAATGTGGGATCG 58.298 43.478 0.00 0.00 34.94 3.69
4840 5627 3.202151 ACAAGAAGTGGAAAGAGTGGGAA 59.798 43.478 0.00 0.00 0.00 3.97
4972 5759 2.053244 AGGATGCGAAGGATTGGATCT 58.947 47.619 0.00 0.00 40.04 2.75
5077 5864 4.221482 TCAACATGCTCAGTCAGAGTGTAT 59.779 41.667 5.11 0.00 46.47 2.29
5113 5900 0.680061 GAGACGGGATAAGGGCGAAT 59.320 55.000 0.00 0.00 0.00 3.34
5296 6083 2.934932 TCCATGGCTGGCTGTGGA 60.935 61.111 19.44 19.44 42.80 4.02
5389 6176 2.706432 CGGTCAATTGCGCGCATA 59.294 55.556 36.83 25.00 0.00 3.14
5422 6209 0.242017 GAGTTGCAGTGGTGGCATTC 59.758 55.000 0.00 0.00 41.58 2.67
5518 6305 1.202770 CCTACCGGATCAATTCCACCC 60.203 57.143 9.46 0.00 45.78 4.61
5533 6320 1.680249 CCCTTCTGCAAAGCTCCTACC 60.680 57.143 0.00 0.00 0.00 3.18
5539 6326 3.336122 CAGACCCTTCTGCAAAGCT 57.664 52.632 0.00 0.00 42.99 3.74
5695 6482 2.617274 GCTGTTCTGCACCCCGAAC 61.617 63.158 9.08 9.08 39.85 3.95
5731 6518 3.549150 CGCGCAAGAAGCTCCTCG 61.549 66.667 8.75 0.00 42.61 4.63
6085 6872 4.690748 CAGGATCTGTACACGTTGAAATGT 59.309 41.667 0.00 0.00 0.00 2.71
6320 7108 0.383949 CAAAACACACCGGACAAGGG 59.616 55.000 9.46 0.00 35.02 3.95
6329 7117 3.063485 ACACACAAAAGCAAAACACACC 58.937 40.909 0.00 0.00 0.00 4.16
6340 7128 8.815141 TTTCATTTGATCCATACACACAAAAG 57.185 30.769 0.00 0.00 34.86 2.27
6341 7129 9.258826 CTTTTCATTTGATCCATACACACAAAA 57.741 29.630 0.00 0.00 34.86 2.44
6446 7235 4.946784 ACGTGAATTAAGAGATTGGCAC 57.053 40.909 0.00 0.00 0.00 5.01
6449 7238 7.364522 TCTCAAACGTGAATTAAGAGATTGG 57.635 36.000 0.00 0.00 31.88 3.16
6465 7257 5.142265 CACTGAATGTCATGTTCTCAAACG 58.858 41.667 0.00 0.00 38.28 3.60
6510 7302 0.108585 ACACACTGAAACATCGGCCT 59.891 50.000 0.00 0.00 0.00 5.19
6515 7307 5.352293 TGCTCATATGACACACTGAAACATC 59.648 40.000 0.00 0.00 0.00 3.06
6534 7326 2.292845 TGAATTTCATGCACGTTGCTCA 59.707 40.909 10.54 2.85 45.31 4.26
6637 7430 5.305128 TCAGAAGACAATTGGAGCCAAAAAT 59.695 36.000 10.83 0.00 39.55 1.82
6714 7507 3.316308 CCCTAGAGCCAAATTGGATTTCG 59.684 47.826 17.47 0.30 35.51 3.46
6794 7587 2.884012 GGGTGTGACAATGAACACATCA 59.116 45.455 21.28 0.00 46.12 3.07
6795 7588 2.884012 TGGGTGTGACAATGAACACATC 59.116 45.455 19.51 17.49 46.83 3.06
6840 7637 8.049721 CAGTATAAGAAAGAGGGGATGAAGTTT 58.950 37.037 0.00 0.00 0.00 2.66
6841 7638 7.403231 TCAGTATAAGAAAGAGGGGATGAAGTT 59.597 37.037 0.00 0.00 0.00 2.66
6904 7701 4.351874 TTTGGAACAGAGGGAGTACAAG 57.648 45.455 0.00 0.00 42.39 3.16
7037 7835 8.434661 GCAACACCAAATTTGTTACATTAGATG 58.565 33.333 16.73 0.00 35.38 2.90
7081 7879 2.827921 GTTTGTACTCCCTCCGTTCCTA 59.172 50.000 0.00 0.00 0.00 2.94
7082 7880 1.622312 GTTTGTACTCCCTCCGTTCCT 59.378 52.381 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.