Multiple sequence alignment - TraesCS5D01G182700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G182700 chr5D 100.000 5945 0 0 3634 9578 284104421 284110365 0.000000e+00 10979.0
1 TraesCS5D01G182700 chr5D 100.000 2339 0 0 869 3207 284101656 284103994 0.000000e+00 4320.0
2 TraesCS5D01G182700 chr5D 100.000 764 0 0 1 764 284100788 284101551 0.000000e+00 1411.0
3 TraesCS5D01G182700 chr5B 93.373 2882 95 32 6767 9578 321969135 321971990 0.000000e+00 4176.0
4 TraesCS5D01G182700 chr5B 95.019 2369 78 10 871 3207 321962238 321964598 0.000000e+00 3685.0
5 TraesCS5D01G182700 chr5B 96.076 1478 56 2 5287 6763 321967591 321969067 0.000000e+00 2407.0
6 TraesCS5D01G182700 chr5B 95.589 1383 46 9 3882 5252 321966230 321967609 0.000000e+00 2202.0
7 TraesCS5D01G182700 chr5B 91.304 690 55 4 1 688 321959414 321960100 0.000000e+00 937.0
8 TraesCS5D01G182700 chr5B 94.779 249 12 1 3636 3884 321964905 321965152 4.200000e-103 387.0
9 TraesCS5D01G182700 chr5B 77.500 160 34 2 3042 3200 372239038 372239196 2.850000e-15 95.3
10 TraesCS5D01G182700 chr5A 93.319 2874 89 35 6764 9575 375839424 375842256 0.000000e+00 4148.0
11 TraesCS5D01G182700 chr5A 94.295 2384 79 14 871 3207 375832162 375834535 0.000000e+00 3596.0
12 TraesCS5D01G182700 chr5A 97.226 1478 40 1 5287 6763 375837881 375839358 0.000000e+00 2501.0
13 TraesCS5D01G182700 chr5A 94.288 1383 42 6 3882 5252 375836542 375837899 0.000000e+00 2082.0
14 TraesCS5D01G182700 chr5A 91.253 766 58 8 1 760 375831363 375832125 0.000000e+00 1035.0
15 TraesCS5D01G182700 chr5A 82.517 143 22 3 3062 3203 375836643 375836503 1.310000e-23 122.0
16 TraesCS5D01G182700 chr1B 80.690 145 22 5 3043 3184 67237906 67237765 3.660000e-19 108.0
17 TraesCS5D01G182700 chr1B 86.747 83 8 3 3038 3118 407828961 407829042 1.320000e-13 89.8
18 TraesCS5D01G182700 chr6A 87.097 93 11 1 9080 9171 68559246 68559154 4.730000e-18 104.0
19 TraesCS5D01G182700 chr6A 82.796 93 15 1 9080 9171 68567384 68567292 2.220000e-11 82.4
20 TraesCS5D01G182700 chr6A 94.444 36 2 0 9323 9358 24833105 24833070 1.000000e-03 56.5
21 TraesCS5D01G182700 chr6B 84.000 100 13 3 9265 9364 648074821 648074917 1.020000e-14 93.5
22 TraesCS5D01G182700 chr6D 89.189 74 7 1 3042 3114 347623722 347623649 3.680000e-14 91.6
23 TraesCS5D01G182700 chr6D 91.667 48 4 0 9317 9364 429827498 429827545 6.210000e-07 67.6
24 TraesCS5D01G182700 chr6D 77.778 108 23 1 376 482 318080774 318080667 2.230000e-06 65.8
25 TraesCS5D01G182700 chr3B 77.027 148 32 2 3043 3189 237845674 237845528 6.160000e-12 84.2
26 TraesCS5D01G182700 chr7A 100.000 41 0 0 5250 5290 641455524 641455484 1.030000e-09 76.8
27 TraesCS5D01G182700 chr2B 97.778 45 0 1 5251 5295 66491807 66491850 1.030000e-09 76.8
28 TraesCS5D01G182700 chr2B 91.228 57 4 1 9302 9358 150708741 150708796 1.030000e-09 76.8
29 TraesCS5D01G182700 chr2B 90.909 55 5 0 9310 9364 384045419 384045473 3.710000e-09 75.0
30 TraesCS5D01G182700 chr2D 85.915 71 8 2 9294 9364 17140046 17140114 3.710000e-09 75.0
31 TraesCS5D01G182700 chr2D 95.556 45 1 1 5251 5295 37959873 37959916 4.800000e-08 71.3
32 TraesCS5D01G182700 chr2D 95.556 45 1 1 5251 5295 37986524 37986567 4.800000e-08 71.3
33 TraesCS5D01G182700 chr7D 80.612 98 16 3 3023 3118 457078235 457078139 1.330000e-08 73.1
34 TraesCS5D01G182700 chr2A 95.556 45 1 1 5251 5295 42790552 42790595 4.800000e-08 71.3
35 TraesCS5D01G182700 chr2A 95.556 45 1 1 5251 5295 42838879 42838922 4.800000e-08 71.3
36 TraesCS5D01G182700 chr2A 95.556 45 1 1 5251 5295 42875793 42875836 4.800000e-08 71.3
37 TraesCS5D01G182700 chr2A 95.556 45 1 1 5251 5295 42932171 42932214 4.800000e-08 71.3
38 TraesCS5D01G182700 chr2A 95.556 45 1 1 5251 5295 42962187 42962230 4.800000e-08 71.3
39 TraesCS5D01G182700 chr7B 93.617 47 2 1 9318 9364 570312795 570312840 1.730000e-07 69.4
40 TraesCS5D01G182700 chr7B 100.000 28 0 0 9146 9173 401553933 401553906 1.700000e-02 52.8
41 TraesCS5D01G182700 chr1A 93.023 43 3 0 373 415 16928917 16928959 8.030000e-06 63.9
42 TraesCS5D01G182700 chr3A 80.519 77 12 3 373 448 688687728 688687802 1.000000e-03 56.5
43 TraesCS5D01G182700 chr4A 100.000 28 0 0 9100 9127 722843000 722842973 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G182700 chr5D 284100788 284110365 9577 False 5570.0 10979 100.000000 1 9578 3 chr5D.!!$F1 9577
1 TraesCS5D01G182700 chr5B 321959414 321971990 12576 False 2299.0 4176 94.356667 1 9578 6 chr5B.!!$F2 9577
2 TraesCS5D01G182700 chr5A 375831363 375842256 10893 False 2672.4 4148 94.076200 1 9575 5 chr5A.!!$F1 9574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 422 0.110678 TGAGAGGTGTCGGTCAGTCT 59.889 55.000 0.00 0.0 0.00 3.24 F
762 2473 0.177141 CGCCGACTTTTCATCCCCTA 59.823 55.000 0.00 0.0 0.00 3.53 F
1307 3271 0.399075 ATTTGGGTCGTCCGGTTTCT 59.601 50.000 0.00 0.0 38.76 2.52 F
2959 4969 0.531657 CAATTCGCCTTTGGGATGCA 59.468 50.000 0.00 0.0 32.93 3.96 F
3694 5707 0.037605 CCTCAAGTACGCCTTCGGTT 60.038 55.000 0.00 0.0 40.69 4.44 F
3873 5886 0.179089 AGCCTCTTGTCGCTGCTATG 60.179 55.000 0.00 0.0 32.98 2.23 F
5301 8809 0.250858 CCTGGTGAGCCACATGTTCA 60.251 55.000 0.00 0.0 40.46 3.18 F
5763 9271 0.889994 TAATGCTGCTGCCTGGTTTG 59.110 50.000 13.47 0.0 38.71 2.93 F
7364 10947 2.111878 CCCCGCTTGCATCCCTAG 59.888 66.667 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 3727 0.752743 TGCCTATGCAGTTCCATGCC 60.753 55.000 0.00 0.0 45.91 4.40 R
2736 4746 1.351350 ACACCCTCCTACAAAAGAGCC 59.649 52.381 0.00 0.0 0.00 4.70 R
3001 5011 2.734079 GCTGCACTAGACTGACAGTTTC 59.266 50.000 10.01 0.0 0.00 2.78 R
3864 5877 0.875040 CCAGACAGCTCATAGCAGCG 60.875 60.000 1.22 0.0 45.56 5.18 R
5503 9011 0.178068 AACACACACGCCAGAAGTCT 59.822 50.000 0.00 0.0 0.00 3.24 R
5509 9017 0.732571 ACAAGAAACACACACGCCAG 59.267 50.000 0.00 0.0 0.00 4.85 R
6311 9820 2.212752 TCCCTTTCCTGAGCCCATAT 57.787 50.000 0.00 0.0 0.00 1.78 R
7367 10950 0.776176 GGAAGGCCATGGGAGATGAT 59.224 55.000 15.13 0.0 0.00 2.45 R
8807 12465 1.593196 CTTGACCAAAACAGCTCGGA 58.407 50.000 0.00 0.0 0.00 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.748879 GCAGGCCCGTTGCAATCTA 60.749 57.895 10.43 0.00 43.89 1.98
119 120 1.802880 GCATCGCTTACGTGGTGATCT 60.803 52.381 13.76 0.00 41.18 2.75
282 286 0.598158 ACGTTAGAGCGGCGTTTTCA 60.598 50.000 9.37 0.00 35.11 2.69
332 336 3.626924 GGACCCCACACGTCAGCT 61.627 66.667 0.00 0.00 31.55 4.24
342 346 2.049156 CGTCAGCTCGAAGTGGCA 60.049 61.111 0.00 0.00 0.00 4.92
416 420 2.509166 TATGAGAGGTGTCGGTCAGT 57.491 50.000 0.00 0.00 0.00 3.41
418 422 0.110678 TGAGAGGTGTCGGTCAGTCT 59.889 55.000 0.00 0.00 0.00 3.24
449 453 1.599797 CCGGTTTGAGAAGCCCGTT 60.600 57.895 0.00 0.00 38.79 4.44
453 457 1.266989 GGTTTGAGAAGCCCGTTTGAG 59.733 52.381 0.00 0.00 0.00 3.02
551 558 3.383505 GCAGATAATGTGGTTTTACCCCC 59.616 47.826 0.00 0.00 37.50 5.40
556 563 6.790461 AGATAATGTGGTTTTACCCCCTTTTT 59.210 34.615 0.00 0.00 37.50 1.94
560 567 8.507582 AATGTGGTTTTACCCCCTTTTTATAA 57.492 30.769 0.00 0.00 37.50 0.98
693 700 0.249322 ACAAGTTCTGGTGACCGTCG 60.249 55.000 0.00 0.00 0.00 5.12
711 2422 0.396811 CGTCTTTCCCCCACAAGTCT 59.603 55.000 0.00 0.00 0.00 3.24
737 2448 2.280186 GTTGCCCGGATCCGCTAG 60.280 66.667 29.12 19.22 38.24 3.42
748 2459 1.381928 ATCCGCTAGAAGTTCGCCGA 61.382 55.000 12.33 5.65 0.00 5.54
756 2467 2.767505 AGAAGTTCGCCGACTTTTCAT 58.232 42.857 0.00 0.00 39.84 2.57
759 2470 0.446616 GTTCGCCGACTTTTCATCCC 59.553 55.000 0.00 0.00 0.00 3.85
760 2471 0.675522 TTCGCCGACTTTTCATCCCC 60.676 55.000 0.00 0.00 0.00 4.81
761 2472 1.078426 CGCCGACTTTTCATCCCCT 60.078 57.895 0.00 0.00 0.00 4.79
762 2473 0.177141 CGCCGACTTTTCATCCCCTA 59.823 55.000 0.00 0.00 0.00 3.53
763 2474 1.202651 CGCCGACTTTTCATCCCCTAT 60.203 52.381 0.00 0.00 0.00 2.57
958 2920 0.613260 GGTGCAAATTTCCCCTTCCC 59.387 55.000 0.00 0.00 0.00 3.97
1266 3230 4.381411 GTCGCAAGCTAAAAGGAGGATAT 58.619 43.478 0.00 0.00 37.18 1.63
1267 3231 5.539048 GTCGCAAGCTAAAAGGAGGATATA 58.461 41.667 0.00 0.00 37.18 0.86
1268 3232 6.166982 GTCGCAAGCTAAAAGGAGGATATAT 58.833 40.000 0.00 0.00 37.18 0.86
1269 3233 7.321153 GTCGCAAGCTAAAAGGAGGATATATA 58.679 38.462 0.00 0.00 37.18 0.86
1307 3271 0.399075 ATTTGGGTCGTCCGGTTTCT 59.601 50.000 0.00 0.00 38.76 2.52
1620 3585 8.621286 TGTTTTGCTAAAAAGAACTCCTTCTAG 58.379 33.333 0.00 0.00 35.52 2.43
1711 3691 7.800380 CCTTATCAATGCAGATTTTCGTATGAC 59.200 37.037 0.00 0.00 0.00 3.06
1747 3727 7.609760 TGTATTTTATTAGGTGCACTCTGTG 57.390 36.000 17.98 0.00 36.51 3.66
1873 3853 9.820229 TGTTTTCTAATTGCTACAAGAATAACG 57.180 29.630 0.00 0.00 30.40 3.18
1878 3858 2.006888 TGCTACAAGAATAACGCTGCC 58.993 47.619 0.00 0.00 0.00 4.85
2205 4185 1.301716 GGCACCTCAACGAGAGCAA 60.302 57.895 0.00 0.00 43.31 3.91
2227 4207 4.556592 ATTTTGTGCCAATAGTTGCCAT 57.443 36.364 0.00 0.00 0.00 4.40
2325 4328 8.600625 CCAAAATTCATCAGCAAATATGACTTG 58.399 33.333 0.00 0.00 31.99 3.16
2335 4338 5.404946 GCAAATATGACTTGCTGTGACATT 58.595 37.500 3.79 0.00 44.66 2.71
2396 4399 8.881262 AGGGTCTTCTCTTTTTAATCTAGTTCA 58.119 33.333 0.00 0.00 0.00 3.18
2470 4475 6.381420 TCGGAAAAGAGAAGAGAGGAATATGT 59.619 38.462 0.00 0.00 0.00 2.29
2710 4720 7.129109 TGAACTGTTAGCTACACTAAATTGC 57.871 36.000 0.00 0.00 42.50 3.56
2825 4835 5.072741 ACAATGCTGACACCACTTCTTATT 58.927 37.500 0.00 0.00 0.00 1.40
2826 4836 5.048504 ACAATGCTGACACCACTTCTTATTG 60.049 40.000 0.00 0.00 0.00 1.90
2959 4969 0.531657 CAATTCGCCTTTGGGATGCA 59.468 50.000 0.00 0.00 32.93 3.96
2992 5002 8.498054 AGTAATACACTTCATCTTTGATGGTG 57.502 34.615 7.58 10.25 39.62 4.17
3001 5011 2.507484 TCTTTGATGGTGAAGGTGCTG 58.493 47.619 0.00 0.00 0.00 4.41
3133 5146 2.517959 CACCTTTTCCATCAAGGCTCA 58.482 47.619 0.00 0.00 44.32 4.26
3155 5168 7.441458 GCTCATTATAGAAATACCCTTTCGTGT 59.559 37.037 0.00 0.00 33.86 4.49
3678 5691 2.111878 CCATCCCGCATCCACCTC 59.888 66.667 0.00 0.00 0.00 3.85
3679 5692 2.745308 CCATCCCGCATCCACCTCA 61.745 63.158 0.00 0.00 0.00 3.86
3686 5699 1.421410 CGCATCCACCTCAAGTACGC 61.421 60.000 0.00 0.00 0.00 4.42
3694 5707 0.037605 CCTCAAGTACGCCTTCGGTT 60.038 55.000 0.00 0.00 40.69 4.44
3758 5771 3.888460 TGGCCTCCTGCAAGCACA 61.888 61.111 3.32 0.00 43.89 4.57
3828 5841 2.438434 CCCACGACCAATGCCCTC 60.438 66.667 0.00 0.00 0.00 4.30
3864 5877 2.626840 CTTGCCTTCTAGCCTCTTGTC 58.373 52.381 0.00 0.00 0.00 3.18
3873 5886 0.179089 AGCCTCTTGTCGCTGCTATG 60.179 55.000 0.00 0.00 32.98 2.23
3927 7420 0.608640 GAGCCTTGACGGAAGAAGGA 59.391 55.000 0.00 0.00 41.26 3.36
3930 7423 1.339151 GCCTTGACGGAAGAAGGACAT 60.339 52.381 0.00 0.00 41.26 3.06
4066 7559 5.946377 AGAGTTCTTATGTGGGAATTTGACC 59.054 40.000 0.00 0.00 0.00 4.02
4142 7635 6.419484 TTCAGTCTCTTCTTACCATGTTCA 57.581 37.500 0.00 0.00 0.00 3.18
4188 7683 9.504708 TTTTCGTCAGGTTATTTACTAATCCAA 57.495 29.630 0.00 0.00 0.00 3.53
4456 7951 4.992688 TGACGCTTGTGTTTCTTCATTTT 58.007 34.783 0.00 0.00 0.00 1.82
4524 8019 8.791327 ATTGGTTTATTGCCCTTATTTCAAAG 57.209 30.769 0.00 0.00 0.00 2.77
4525 8020 7.309770 TGGTTTATTGCCCTTATTTCAAAGT 57.690 32.000 0.00 0.00 0.00 2.66
4526 8021 8.423906 TGGTTTATTGCCCTTATTTCAAAGTA 57.576 30.769 0.00 0.00 0.00 2.24
4527 8022 8.527810 TGGTTTATTGCCCTTATTTCAAAGTAG 58.472 33.333 0.00 0.00 0.00 2.57
4528 8023 8.745590 GGTTTATTGCCCTTATTTCAAAGTAGA 58.254 33.333 0.00 0.00 0.00 2.59
4662 8157 7.387948 AGTTTATACCTTGTGTGAGTTTGCTAG 59.612 37.037 0.00 0.00 0.00 3.42
4667 8162 2.846193 TGTGTGAGTTTGCTAGGGTTC 58.154 47.619 0.00 0.00 0.00 3.62
4669 8164 3.118038 TGTGTGAGTTTGCTAGGGTTCTT 60.118 43.478 0.00 0.00 0.00 2.52
4670 8165 3.883489 GTGTGAGTTTGCTAGGGTTCTTT 59.117 43.478 0.00 0.00 0.00 2.52
4672 8167 4.338118 TGTGAGTTTGCTAGGGTTCTTTTG 59.662 41.667 0.00 0.00 0.00 2.44
4683 8183 6.127980 GCTAGGGTTCTTTTGTTCACCTAATC 60.128 42.308 0.00 0.00 0.00 1.75
4830 8330 1.878522 GCACCTGGAGATGTACGCG 60.879 63.158 3.53 3.53 0.00 6.01
4982 8482 5.772521 AGCATGTTTCCTGAAAATGTACAC 58.227 37.500 0.00 0.00 31.33 2.90
5249 8757 7.285566 AGAAATATAGTGAGCCACATGTTCAT 58.714 34.615 0.00 0.00 36.74 2.57
5250 8758 7.776969 AGAAATATAGTGAGCCACATGTTCATT 59.223 33.333 0.00 0.00 36.74 2.57
5251 8759 7.886629 AATATAGTGAGCCACATGTTCATTT 57.113 32.000 0.00 0.00 36.74 2.32
5252 8760 7.886629 ATATAGTGAGCCACATGTTCATTTT 57.113 32.000 0.00 0.00 36.74 1.82
5253 8761 4.942761 AGTGAGCCACATGTTCATTTTT 57.057 36.364 0.00 0.00 36.74 1.94
5276 8784 4.844349 TTTTGAGATAGCTTACCAGGCT 57.156 40.909 0.00 0.00 43.02 4.58
5277 8785 4.844349 TTTGAGATAGCTTACCAGGCTT 57.156 40.909 0.00 0.00 40.74 4.35
5278 8786 3.827008 TGAGATAGCTTACCAGGCTTG 57.173 47.619 0.00 0.00 40.74 4.01
5279 8787 2.158900 TGAGATAGCTTACCAGGCTTGC 60.159 50.000 0.00 0.00 40.74 4.01
5280 8788 2.103941 GAGATAGCTTACCAGGCTTGCT 59.896 50.000 0.00 6.04 40.74 3.91
5281 8789 2.158842 AGATAGCTTACCAGGCTTGCTG 60.159 50.000 10.05 0.00 40.74 4.41
5282 8790 0.392998 TAGCTTACCAGGCTTGCTGC 60.393 55.000 10.05 0.00 40.74 5.25
5291 8799 3.745803 GCTTGCTGCCTGGTGAGC 61.746 66.667 11.60 11.60 35.15 4.26
5292 8800 3.060615 CTTGCTGCCTGGTGAGCC 61.061 66.667 14.75 1.61 34.04 4.70
5293 8801 3.855503 CTTGCTGCCTGGTGAGCCA 62.856 63.158 14.75 5.68 43.73 4.75
5294 8802 4.648626 TGCTGCCTGGTGAGCCAC 62.649 66.667 14.75 0.00 40.46 5.01
5295 8803 4.648626 GCTGCCTGGTGAGCCACA 62.649 66.667 8.25 0.00 40.46 4.17
5296 8804 2.353958 CTGCCTGGTGAGCCACAT 59.646 61.111 7.49 0.00 40.46 3.21
5297 8805 2.034532 TGCCTGGTGAGCCACATG 59.965 61.111 7.49 0.00 40.46 3.21
5298 8806 2.034687 GCCTGGTGAGCCACATGT 59.965 61.111 0.00 0.00 40.46 3.21
5299 8807 1.604593 GCCTGGTGAGCCACATGTT 60.605 57.895 0.00 0.00 40.46 2.71
5300 8808 1.589716 GCCTGGTGAGCCACATGTTC 61.590 60.000 0.00 0.00 40.46 3.18
5301 8809 0.250858 CCTGGTGAGCCACATGTTCA 60.251 55.000 0.00 0.00 40.46 3.18
5384 8892 9.168553 ACAGTAAGGATACCTACTGATACTCTA 57.831 37.037 18.85 0.00 37.39 2.43
5467 8975 3.568007 TGATGTTCACACCTTGCTAAACC 59.432 43.478 0.00 0.00 0.00 3.27
5503 9011 4.909696 TCCTGCATTTCTTGTTTTTCGA 57.090 36.364 0.00 0.00 0.00 3.71
5509 9017 5.971202 TGCATTTCTTGTTTTTCGAGACTTC 59.029 36.000 0.00 0.00 36.41 3.01
5743 9251 4.025396 CGTCAGGATCACATAAGTTGATGC 60.025 45.833 0.00 0.00 0.00 3.91
5763 9271 0.889994 TAATGCTGCTGCCTGGTTTG 59.110 50.000 13.47 0.00 38.71 2.93
6079 9587 8.383619 CGTTTTTACTCTGGATCTAGTTGATTG 58.616 37.037 5.93 0.00 35.14 2.67
6081 9589 7.496346 TTTACTCTGGATCTAGTTGATTGGT 57.504 36.000 5.93 0.00 35.14 3.67
6244 9752 5.242795 ACCTGCAGTTGAGTAAATACCTT 57.757 39.130 13.81 0.00 0.00 3.50
6282 9790 7.682787 ACTCCATAGGTGATTTATGAAGAGT 57.317 36.000 0.00 0.00 31.23 3.24
6302 9811 9.660180 GAAGAGTATTCTGAGAAACTGGTTTAT 57.340 33.333 12.48 0.00 32.79 1.40
6311 9820 5.888724 TGAGAAACTGGTTTATGGAAACACA 59.111 36.000 0.00 0.00 45.78 3.72
6521 10030 6.854496 ATGCATTATCATGGAATTTTGCAC 57.146 33.333 0.00 0.00 41.13 4.57
6713 10222 8.622572 TCTTCCCATATATATCTACAATGCCA 57.377 34.615 0.00 0.00 0.00 4.92
6731 10240 8.584157 ACAATGCCAAATTCAGAGTTAATGTAA 58.416 29.630 0.00 0.00 0.00 2.41
6802 10376 9.020731 GGGAAGGAACTGATTGTAAATTAAGAA 57.979 33.333 0.00 0.00 40.86 2.52
6868 10442 8.911918 TCCACAAGTACAAATTGTATTAGTGT 57.088 30.769 21.48 13.26 38.80 3.55
7118 10692 7.565848 TCAAATGATTTTTGTTTGAATCAGCG 58.434 30.769 5.22 0.00 43.28 5.18
7261 10835 2.203070 GGCATCCCGCTTCATCGT 60.203 61.111 0.00 0.00 41.91 3.73
7363 10946 4.189580 GCCCCGCTTGCATCCCTA 62.190 66.667 0.00 0.00 0.00 3.53
7364 10947 2.111878 CCCCGCTTGCATCCCTAG 59.888 66.667 0.00 0.00 0.00 3.02
7365 10948 2.746375 CCCCGCTTGCATCCCTAGT 61.746 63.158 0.00 0.00 0.00 2.57
7366 10949 1.224592 CCCGCTTGCATCCCTAGTT 59.775 57.895 0.00 0.00 0.00 2.24
7367 10950 0.468226 CCCGCTTGCATCCCTAGTTA 59.532 55.000 0.00 0.00 0.00 2.24
7368 10951 1.072331 CCCGCTTGCATCCCTAGTTAT 59.928 52.381 0.00 0.00 0.00 1.89
7369 10952 2.417719 CCGCTTGCATCCCTAGTTATC 58.582 52.381 0.00 0.00 0.00 1.75
7370 10953 2.224281 CCGCTTGCATCCCTAGTTATCA 60.224 50.000 0.00 0.00 0.00 2.15
7371 10954 3.557898 CCGCTTGCATCCCTAGTTATCAT 60.558 47.826 0.00 0.00 0.00 2.45
7574 11182 1.676006 ACTGACTTTTGCCTCCAAACG 59.324 47.619 0.00 0.00 40.45 3.60
7617 11225 9.679661 TTGAACTAAATCATGGTTAGCTGAATA 57.320 29.630 13.79 0.00 32.74 1.75
7618 11226 9.679661 TGAACTAAATCATGGTTAGCTGAATAA 57.320 29.630 13.79 0.00 32.74 1.40
7628 11236 8.789762 CATGGTTAGCTGAATAATGATCATTGA 58.210 33.333 27.59 13.81 32.50 2.57
7630 11238 9.187996 TGGTTAGCTGAATAATGATCATTGAAA 57.812 29.630 27.59 11.11 32.50 2.69
7674 11282 3.008813 TCTGAGTACGACCAGAGTAACCT 59.991 47.826 10.28 0.00 34.78 3.50
7782 11392 7.742556 TTCATTGACATTGTAAGTGATCACA 57.257 32.000 27.02 6.95 0.00 3.58
8025 11636 3.682858 TCGCAGTTACTCATTTTAGTGCC 59.317 43.478 0.00 0.00 34.30 5.01
8067 11678 5.928264 GCATAATTTTGCTTGAACCTCTTGT 59.072 36.000 12.94 0.00 39.57 3.16
8092 11703 8.592155 GTTCAATAGTTTCTGAAAAACCACAAC 58.408 33.333 4.09 1.79 33.52 3.32
8378 12034 1.545841 GAGCAAATTTCCTCCCCGTT 58.454 50.000 0.00 0.00 0.00 4.44
8465 12121 9.979578 TTCATAACAATTTAGCTTTGTGATTGT 57.020 25.926 3.10 5.35 41.28 2.71
8516 12172 1.852895 CGTAGAAATGTAGCGGCACTC 59.147 52.381 1.45 0.00 0.00 3.51
8745 12403 3.126831 GGTATAGACTGTGCATGCACTC 58.873 50.000 41.43 33.06 46.30 3.51
8807 12465 1.048601 ACAGATTATCCGGCGATGGT 58.951 50.000 9.30 0.00 0.00 3.55
8817 12475 2.125512 GCGATGGTCCGAGCTGTT 60.126 61.111 0.00 0.00 0.00 3.16
8818 12476 1.741770 GCGATGGTCCGAGCTGTTT 60.742 57.895 0.00 0.00 0.00 2.83
8859 12517 2.765689 ACCAAACATCCCAGAACCAA 57.234 45.000 0.00 0.00 0.00 3.67
8874 12533 5.092781 CAGAACCAAACAGTGTTGTTGTAC 58.907 41.667 9.79 0.00 46.54 2.90
8996 12656 1.622312 GTTTGTACTCCCTCCGTTCCT 59.378 52.381 0.00 0.00 0.00 3.36
8999 12659 2.731572 TGTACTCCCTCCGTTCCTAAG 58.268 52.381 0.00 0.00 0.00 2.18
9041 12726 8.434661 GCAACACCAAATTTGTTACATTAGATG 58.565 33.333 16.73 0.00 35.38 2.90
9174 12860 4.351874 TTTGGAACAGAGGGAGTACAAG 57.648 45.455 0.00 0.00 42.39 3.16
9237 12923 7.403231 TCAGTATAAGAAAGAGGGGATGAAGTT 59.597 37.037 0.00 0.00 0.00 2.66
9238 12924 8.049721 CAGTATAAGAAAGAGGGGATGAAGTTT 58.950 37.037 0.00 0.00 0.00 2.66
9284 12970 2.884012 GGGTGTGACAATGAACACATCA 59.116 45.455 21.28 0.00 46.12 3.07
9364 13054 3.316308 CCCTAGAGCCAAATTGGATTTCG 59.684 47.826 17.47 0.30 35.51 3.46
9441 13131 5.305128 TCAGAAGACAATTGGAGCCAAAAAT 59.695 36.000 10.83 0.00 39.55 1.82
9544 13235 2.292845 TGAATTTCATGCACGTTGCTCA 59.707 40.909 10.54 2.85 45.31 4.26
9563 13254 5.352293 TGCTCATATGACACACTGAAACATC 59.648 40.000 0.00 0.00 0.00 3.06
9568 13259 0.108585 ACACACTGAAACATCGGCCT 59.891 50.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.097466 CCGGATTTCTCATGTTTTCCCG 59.903 50.000 0.00 0.00 34.76 5.14
35 36 1.296867 CGCCGCTTAGATTGCAACG 60.297 57.895 0.00 0.00 0.00 4.10
92 93 0.321298 ACGTAAGCGATGCCCACTTT 60.321 50.000 0.00 0.00 45.62 2.66
318 322 3.220999 TTCGAGCTGACGTGTGGGG 62.221 63.158 0.00 0.00 34.70 4.96
416 420 0.182061 ACCGGCTCTATACGTCCAGA 59.818 55.000 0.00 0.00 0.00 3.86
418 422 1.135527 CAAACCGGCTCTATACGTCCA 59.864 52.381 0.00 0.00 0.00 4.02
449 453 4.263435 ACCGGTCACAAAAAGTAACTCAA 58.737 39.130 0.00 0.00 0.00 3.02
646 653 5.237344 CAGTCCGAGTCTTTGTCATCTTTTT 59.763 40.000 0.00 0.00 0.00 1.94
652 659 1.620819 AGCAGTCCGAGTCTTTGTCAT 59.379 47.619 0.00 0.00 0.00 3.06
693 700 1.545651 CCAGACTTGTGGGGGAAAGAC 60.546 57.143 0.00 0.00 33.46 3.01
726 2437 0.935366 GCGAACTTCTAGCGGATCCG 60.935 60.000 30.03 30.03 43.09 4.18
737 2448 2.159693 GGATGAAAAGTCGGCGAACTTC 60.160 50.000 12.92 14.86 38.52 3.01
1307 3271 5.841810 CAACTTTGCTCCCATGTAGAAAAA 58.158 37.500 0.00 0.00 0.00 1.94
1396 3361 5.004821 CCACTCGACAAAGAAAGTATGATCG 59.995 44.000 0.00 0.00 0.00 3.69
1451 3416 5.477984 TGGTTTTCTTTCTCAGCATGCTAAT 59.522 36.000 22.19 0.00 34.76 1.73
1664 3629 4.706962 AGGAAGAACAAAGAGCACAAAAGT 59.293 37.500 0.00 0.00 0.00 2.66
1747 3727 0.752743 TGCCTATGCAGTTCCATGCC 60.753 55.000 0.00 0.00 45.91 4.40
1873 3853 3.594603 TCTAACTCTGTAACAGGCAGC 57.405 47.619 0.00 0.00 34.21 5.25
1878 3858 9.503399 AAAAAGGGTTATCTAACTCTGTAACAG 57.497 33.333 3.30 0.00 45.81 3.16
2194 4174 2.472488 GGCACAAAATTTGCTCTCGTTG 59.528 45.455 5.52 0.00 40.07 4.10
2325 4328 6.060028 TGTCTCTTTTGTAAATGTCACAGC 57.940 37.500 0.00 0.00 0.00 4.40
2326 4329 9.520204 AATTTGTCTCTTTTGTAAATGTCACAG 57.480 29.630 0.00 0.00 0.00 3.66
2470 4475 3.055385 GGCAACTAGGTTCCACTACATCA 60.055 47.826 0.00 0.00 0.00 3.07
2684 4694 8.237267 GCAATTTAGTGTAGCTAACAGTTCATT 58.763 33.333 0.00 0.00 42.03 2.57
2736 4746 1.351350 ACACCCTCCTACAAAAGAGCC 59.649 52.381 0.00 0.00 0.00 4.70
2825 4835 5.104859 TGTCTTTAACCTTGGACTGTGTACA 60.105 40.000 0.00 0.00 0.00 2.90
2826 4836 5.362263 TGTCTTTAACCTTGGACTGTGTAC 58.638 41.667 0.00 0.00 0.00 2.90
3001 5011 2.734079 GCTGCACTAGACTGACAGTTTC 59.266 50.000 10.01 0.00 0.00 2.78
3018 5028 3.514645 CCCAAGTCATTAACAATGCTGC 58.485 45.455 0.00 0.00 38.77 5.25
3633 5646 1.138047 GCGGGTTCACTATGTCGACG 61.138 60.000 11.62 0.00 0.00 5.12
3634 5647 0.108992 TGCGGGTTCACTATGTCGAC 60.109 55.000 9.11 9.11 0.00 4.20
3635 5648 0.172578 CTGCGGGTTCACTATGTCGA 59.827 55.000 0.00 0.00 0.00 4.20
3636 5649 1.421410 GCTGCGGGTTCACTATGTCG 61.421 60.000 0.00 0.00 0.00 4.35
3637 5650 1.090052 GGCTGCGGGTTCACTATGTC 61.090 60.000 0.00 0.00 0.00 3.06
3638 5651 1.078426 GGCTGCGGGTTCACTATGT 60.078 57.895 0.00 0.00 0.00 2.29
3639 5652 0.811616 GAGGCTGCGGGTTCACTATG 60.812 60.000 0.00 0.00 0.00 2.23
3640 5653 1.522569 GAGGCTGCGGGTTCACTAT 59.477 57.895 0.00 0.00 0.00 2.12
3641 5654 2.978824 GAGGCTGCGGGTTCACTA 59.021 61.111 0.00 0.00 0.00 2.74
3642 5655 4.379243 CGAGGCTGCGGGTTCACT 62.379 66.667 0.00 0.00 0.00 3.41
3758 5771 1.153086 GACATGGGAGCGCCAAGAT 60.153 57.895 9.31 0.00 35.15 2.40
3802 5815 1.393487 TTGGTCGTGGGAACGAGACA 61.393 55.000 0.46 1.72 43.18 3.41
3828 5841 3.466712 GCAAGGTCATGCATCATATCG 57.533 47.619 0.00 0.00 45.70 2.92
3864 5877 0.875040 CCAGACAGCTCATAGCAGCG 60.875 60.000 1.22 0.00 45.56 5.18
3873 5886 1.301716 TGCCGTTTCCAGACAGCTC 60.302 57.895 0.00 0.00 0.00 4.09
3927 7420 2.432146 TCTCGAGGCTGCTCAAATATGT 59.568 45.455 13.56 0.00 0.00 2.29
3930 7423 3.827008 ATTCTCGAGGCTGCTCAAATA 57.173 42.857 13.56 0.00 0.00 1.40
4040 7533 6.655003 GTCAAATTCCCACATAAGAACTCTCA 59.345 38.462 0.00 0.00 0.00 3.27
4066 7559 8.470805 ACTGAGTACAATGATACTAACTTCCAG 58.529 37.037 0.00 0.00 35.48 3.86
4166 7659 9.716507 CAAATTGGATTAGTAAATAACCTGACG 57.283 33.333 0.00 0.00 0.00 4.35
4357 7852 4.217118 AGACAAACAGCTAGGCATCAAAAG 59.783 41.667 0.00 0.00 0.00 2.27
4662 8157 5.535030 AGTGATTAGGTGAACAAAAGAACCC 59.465 40.000 0.00 0.00 32.85 4.11
4667 8162 7.144722 TGCATAGTGATTAGGTGAACAAAAG 57.855 36.000 0.00 0.00 0.00 2.27
4669 8164 6.488344 TGTTGCATAGTGATTAGGTGAACAAA 59.512 34.615 0.00 0.00 0.00 2.83
4670 8165 6.000840 TGTTGCATAGTGATTAGGTGAACAA 58.999 36.000 0.00 0.00 0.00 2.83
4672 8167 6.494893 TTGTTGCATAGTGATTAGGTGAAC 57.505 37.500 0.00 0.00 0.00 3.18
4683 8183 9.738832 TGATATGATTTGATTTGTTGCATAGTG 57.261 29.630 0.00 0.00 0.00 2.74
4759 8259 0.892755 ACACGATACGGTGATGTGGT 59.107 50.000 11.37 0.00 40.38 4.16
4761 8261 2.159352 TGGTACACGATACGGTGATGTG 60.159 50.000 0.00 6.84 40.38 3.21
4762 8262 2.093890 TGGTACACGATACGGTGATGT 58.906 47.619 0.00 0.00 40.38 3.06
4931 8431 7.968405 ACTTACATGACACACAAAAAGAGTTTC 59.032 33.333 0.00 0.00 0.00 2.78
4944 8444 6.072728 GGAAACATGCTAACTTACATGACACA 60.073 38.462 9.77 0.00 45.23 3.72
4982 8482 8.965172 AGTAACTCGTAAAGTAAATGCATATCG 58.035 33.333 0.00 0.00 37.17 2.92
5219 8727 7.600375 ACATGTGGCTCACTATATTTCTTATCG 59.400 37.037 0.00 0.00 35.11 2.92
5254 8762 5.179452 AGCCTGGTAAGCTATCTCAAAAA 57.821 39.130 0.00 0.00 39.29 1.94
5255 8763 4.844349 AGCCTGGTAAGCTATCTCAAAA 57.156 40.909 0.00 0.00 39.29 2.44
5256 8764 4.517285 CAAGCCTGGTAAGCTATCTCAAA 58.483 43.478 0.00 0.00 40.49 2.69
5257 8765 3.682718 GCAAGCCTGGTAAGCTATCTCAA 60.683 47.826 0.00 0.00 40.49 3.02
5258 8766 2.158900 GCAAGCCTGGTAAGCTATCTCA 60.159 50.000 0.00 0.00 40.49 3.27
5259 8767 2.103941 AGCAAGCCTGGTAAGCTATCTC 59.896 50.000 7.04 0.00 40.49 2.75
5260 8768 2.122768 AGCAAGCCTGGTAAGCTATCT 58.877 47.619 7.04 0.00 40.49 1.98
5261 8769 2.216898 CAGCAAGCCTGGTAAGCTATC 58.783 52.381 8.22 0.00 40.49 2.08
5262 8770 1.748591 GCAGCAAGCCTGGTAAGCTAT 60.749 52.381 8.22 0.00 40.49 2.97
5263 8771 0.392998 GCAGCAAGCCTGGTAAGCTA 60.393 55.000 8.22 0.00 40.49 3.32
5264 8772 1.676967 GCAGCAAGCCTGGTAAGCT 60.677 57.895 0.00 0.00 44.19 3.74
5265 8773 2.880648 GCAGCAAGCCTGGTAAGC 59.119 61.111 0.00 0.00 42.03 3.09
5274 8782 3.745803 GCTCACCAGGCAGCAAGC 61.746 66.667 6.16 0.00 44.65 4.01
5275 8783 3.060615 GGCTCACCAGGCAGCAAG 61.061 66.667 12.25 0.00 44.88 4.01
5284 8792 2.291209 AATGAACATGTGGCTCACCA 57.709 45.000 0.00 0.00 46.51 4.17
5285 8793 2.297033 ACAAATGAACATGTGGCTCACC 59.703 45.455 0.00 0.00 32.73 4.02
5286 8794 3.254166 AGACAAATGAACATGTGGCTCAC 59.746 43.478 7.45 0.00 40.36 3.51
5287 8795 3.489355 AGACAAATGAACATGTGGCTCA 58.511 40.909 7.45 0.00 40.36 4.26
5288 8796 4.232221 CAAGACAAATGAACATGTGGCTC 58.768 43.478 12.98 0.00 43.55 4.70
5289 8797 3.638160 ACAAGACAAATGAACATGTGGCT 59.362 39.130 7.45 7.45 46.26 4.75
5290 8798 3.981211 ACAAGACAAATGAACATGTGGC 58.019 40.909 0.00 6.34 34.12 5.01
5291 8799 5.443185 AGACAAGACAAATGAACATGTGG 57.557 39.130 0.00 0.00 30.24 4.17
5292 8800 7.800380 GTCTAAGACAAGACAAATGAACATGTG 59.200 37.037 0.00 3.72 44.41 3.21
5293 8801 7.041098 GGTCTAAGACAAGACAAATGAACATGT 60.041 37.037 6.37 0.00 46.40 3.21
5294 8802 7.041167 TGGTCTAAGACAAGACAAATGAACATG 60.041 37.037 6.37 0.00 46.40 3.21
5295 8803 6.998074 TGGTCTAAGACAAGACAAATGAACAT 59.002 34.615 6.37 0.00 46.40 2.71
5296 8804 6.353323 TGGTCTAAGACAAGACAAATGAACA 58.647 36.000 6.37 0.00 46.40 3.18
5297 8805 6.861065 TGGTCTAAGACAAGACAAATGAAC 57.139 37.500 6.37 0.00 46.40 3.18
5298 8806 7.873719 TTTGGTCTAAGACAAGACAAATGAA 57.126 32.000 6.37 0.00 46.40 2.57
5299 8807 7.873719 TTTTGGTCTAAGACAAGACAAATGA 57.126 32.000 6.37 0.00 46.40 2.57
5300 8808 8.190784 ACTTTTTGGTCTAAGACAAGACAAATG 58.809 33.333 6.37 4.55 46.40 2.32
5301 8809 8.293699 ACTTTTTGGTCTAAGACAAGACAAAT 57.706 30.769 6.37 0.00 46.40 2.32
5467 8975 8.195436 AGAAATGCAGGAAATTGACAATATGAG 58.805 33.333 0.00 0.00 0.00 2.90
5503 9011 0.178068 AACACACACGCCAGAAGTCT 59.822 50.000 0.00 0.00 0.00 3.24
5509 9017 0.732571 ACAAGAAACACACACGCCAG 59.267 50.000 0.00 0.00 0.00 4.85
5743 9251 1.135199 CAAACCAGGCAGCAGCATTAG 60.135 52.381 2.65 0.00 44.61 1.73
5763 9271 7.393515 ACCTCAACAAATCCTACATAAAGAACC 59.606 37.037 0.00 0.00 0.00 3.62
5994 9502 5.382664 AAATATGGTTGGTCCTCCGTAAT 57.617 39.130 8.81 0.74 37.07 1.89
6079 9587 9.716531 ACTAGTGTAAGGAACTAAAATACAACC 57.283 33.333 0.00 0.00 38.49 3.77
6162 9670 8.079211 AGGATACAATTTCAGTAGCTCTTACA 57.921 34.615 0.00 0.00 41.41 2.41
6244 9752 9.940974 TCACCTATGGAGTTACCTATAAGTAAA 57.059 33.333 0.00 0.00 39.86 2.01
6282 9790 9.010029 GTTTCCATAAACCAGTTTCTCAGAATA 57.990 33.333 0.00 0.00 39.29 1.75
6302 9811 2.357050 CCTGAGCCCATATGTGTTTCCA 60.357 50.000 1.24 0.00 0.00 3.53
6311 9820 2.212752 TCCCTTTCCTGAGCCCATAT 57.787 50.000 0.00 0.00 0.00 1.78
6521 10030 3.317711 AGGAGAGCATACGATGAGTTCTG 59.682 47.826 0.00 0.00 0.00 3.02
6635 10144 4.770874 CAGGTTACCCCGTGGCCG 62.771 72.222 0.00 0.00 38.74 6.13
6802 10376 5.630121 TCCACATGATTAGTTTGTTCAGGT 58.370 37.500 0.00 0.00 35.01 4.00
6893 10467 6.433093 ACCATCAAAACAATTGTACTCTACCC 59.567 38.462 12.39 0.00 0.00 3.69
7118 10692 2.271944 ACTTGTTGGCCCTAACTGAC 57.728 50.000 0.00 0.00 0.00 3.51
7261 10835 5.843673 TGAACTAACCAATGAGTTTTGCA 57.156 34.783 0.00 0.00 36.04 4.08
7359 10942 3.054802 GCCATGGGAGATGATAACTAGGG 60.055 52.174 15.13 0.00 0.00 3.53
7360 10943 3.054802 GGCCATGGGAGATGATAACTAGG 60.055 52.174 15.13 0.00 0.00 3.02
7361 10944 3.843027 AGGCCATGGGAGATGATAACTAG 59.157 47.826 15.13 0.00 0.00 2.57
7362 10945 3.874316 AGGCCATGGGAGATGATAACTA 58.126 45.455 15.13 0.00 0.00 2.24
7363 10946 2.711174 AGGCCATGGGAGATGATAACT 58.289 47.619 15.13 0.00 0.00 2.24
7364 10947 3.416156 GAAGGCCATGGGAGATGATAAC 58.584 50.000 15.13 0.00 0.00 1.89
7365 10948 2.376518 GGAAGGCCATGGGAGATGATAA 59.623 50.000 15.13 0.00 0.00 1.75
7366 10949 1.988107 GGAAGGCCATGGGAGATGATA 59.012 52.381 15.13 0.00 0.00 2.15
7367 10950 0.776176 GGAAGGCCATGGGAGATGAT 59.224 55.000 15.13 0.00 0.00 2.45
7368 10951 1.355718 GGGAAGGCCATGGGAGATGA 61.356 60.000 15.13 0.00 35.15 2.92
7369 10952 1.152368 GGGAAGGCCATGGGAGATG 59.848 63.158 15.13 0.00 35.15 2.90
7370 10953 1.309013 TGGGAAGGCCATGGGAGAT 60.309 57.895 15.13 0.00 35.15 2.75
7371 10954 2.127065 TGGGAAGGCCATGGGAGA 59.873 61.111 15.13 0.00 35.15 3.71
7674 11282 2.625790 GCCACCTGAAATTGGTACACAA 59.374 45.455 0.00 0.00 44.54 3.33
7782 11392 8.827677 GGATAGATAAGAAATTGCACTACGTTT 58.172 33.333 0.00 0.00 0.00 3.60
8025 11636 7.589205 ATTATGCGTTTTATTTCATTCGACG 57.411 32.000 0.00 0.00 0.00 5.12
8067 11678 7.762159 GGTTGTGGTTTTTCAGAAACTATTGAA 59.238 33.333 0.00 0.00 0.00 2.69
8092 11703 5.395642 GTTGTTTGGGATGTTATAACGTGG 58.604 41.667 15.04 0.00 0.00 4.94
8745 12403 8.153550 ACCTAATCCATCATTTAGAACTAGCTG 58.846 37.037 0.00 0.00 0.00 4.24
8789 12447 1.673033 GGACCATCGCCGGATAATCTG 60.673 57.143 5.05 0.00 0.00 2.90
8807 12465 1.593196 CTTGACCAAAACAGCTCGGA 58.407 50.000 0.00 0.00 0.00 4.55
8817 12475 6.337356 GTTTGAGAAAATCACCTTGACCAAA 58.663 36.000 0.00 0.00 37.77 3.28
8818 12476 5.163457 GGTTTGAGAAAATCACCTTGACCAA 60.163 40.000 0.00 0.00 37.77 3.67
8996 12656 7.276218 GGTGTTGCAGACGTTATAATACACTTA 59.724 37.037 15.39 0.00 35.10 2.24
8999 12659 5.349270 TGGTGTTGCAGACGTTATAATACAC 59.651 40.000 10.41 10.41 34.25 2.90
9114 12799 7.078011 AGTTTTGTTCTCAGTCAAACTTCTC 57.922 36.000 0.00 0.00 34.05 2.87
9316 13006 3.669344 CTCCTGCGCGCCCAAAAA 61.669 61.111 30.77 7.64 0.00 1.94
9321 13011 4.996434 ATATGCTCCTGCGCGCCC 62.996 66.667 30.77 12.03 43.34 6.13
9364 13054 5.772521 AGTGTTAAAGATGCACATTGTTCC 58.227 37.500 0.00 0.00 35.75 3.62
9441 13131 7.341445 ACAAGTTTAGTGCCACTATTTTGAA 57.659 32.000 20.76 6.29 29.64 2.69
9544 13235 3.623060 GCCGATGTTTCAGTGTGTCATAT 59.377 43.478 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.