Multiple sequence alignment - TraesCS5D01G182600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G182600 chr5D 100.000 5772 0 0 1 5772 283494724 283488953 0.000000e+00 10659.0
1 TraesCS5D01G182600 chr5B 96.676 4302 93 25 562 4842 321625246 321620974 0.000000e+00 7107.0
2 TraesCS5D01G182600 chr5B 91.624 585 45 4 1 584 321639583 321639002 0.000000e+00 806.0
3 TraesCS5D01G182600 chr5B 92.092 392 22 3 4993 5375 321620954 321620563 1.410000e-150 544.0
4 TraesCS5D01G182600 chr5B 93.388 121 6 2 5652 5772 321620512 321620394 1.650000e-40 178.0
5 TraesCS5D01G182600 chr5B 96.875 32 1 0 4520 4551 520368865 520368896 3.000000e-03 54.7
6 TraesCS5D01G182600 chr5A 95.148 3978 103 31 1496 5431 375578867 375574938 0.000000e+00 6194.0
7 TraesCS5D01G182600 chr5A 93.226 561 15 8 908 1458 375579408 375578861 0.000000e+00 804.0
8 TraesCS5D01G182600 chr5A 86.523 512 38 9 372 874 375579900 375579411 8.510000e-148 534.0
9 TraesCS5D01G182600 chr5A 86.416 346 18 13 5452 5772 375574998 375574657 9.200000e-93 351.0
10 TraesCS5D01G182600 chr5A 96.154 52 2 0 935 986 375600484 375600433 1.030000e-12 86.1
11 TraesCS5D01G182600 chr5A 100.000 30 0 0 5423 5452 375574936 375574907 8.080000e-04 56.5
12 TraesCS5D01G182600 chr2D 94.516 310 16 1 3 312 461189992 461190300 1.460000e-130 477.0
13 TraesCS5D01G182600 chr2D 91.139 79 5 2 5694 5772 524032603 524032527 7.910000e-19 106.0
14 TraesCS5D01G182600 chr3B 94.231 312 17 1 1 312 673804318 673804628 5.230000e-130 475.0
15 TraesCS5D01G182600 chr4D 93.438 320 20 1 1 320 331720887 331721205 1.880000e-129 473.0
16 TraesCS5D01G182600 chr4D 79.339 121 24 1 5527 5647 509433282 509433163 3.710000e-12 84.2
17 TraesCS5D01G182600 chr4D 79.825 114 17 4 4485 4597 70353866 70353974 1.720000e-10 78.7
18 TraesCS5D01G182600 chr4D 100.000 33 0 0 4485 4517 426657366 426657398 1.740000e-05 62.1
19 TraesCS5D01G182600 chr7B 93.910 312 18 1 1 312 199746253 199745943 2.430000e-128 470.0
20 TraesCS5D01G182600 chr7B 84.838 277 42 0 2579 2855 290017516 290017240 4.400000e-71 279.0
21 TraesCS5D01G182600 chr7B 84.475 219 28 6 2962 3177 290016998 290016783 1.630000e-50 211.0
22 TraesCS5D01G182600 chr7B 84.615 117 18 0 4654 4770 290014960 290014844 3.650000e-22 117.0
23 TraesCS5D01G182600 chr3D 93.930 313 15 4 1 312 439948322 439948631 2.430000e-128 470.0
24 TraesCS5D01G182600 chrUn 93.590 312 19 1 1 312 156665252 156665562 1.130000e-126 464.0
25 TraesCS5D01G182600 chr2A 93.590 312 18 2 1 312 684103795 684103486 1.130000e-126 464.0
26 TraesCS5D01G182600 chr2A 94.030 67 3 1 5703 5769 593840120 593840185 3.680000e-17 100.0
27 TraesCS5D01G182600 chr7D 93.312 314 20 1 1 314 413315553 413315865 4.070000e-126 462.0
28 TraesCS5D01G182600 chr7D 84.838 277 42 0 2579 2855 305830724 305830448 4.400000e-71 279.0
29 TraesCS5D01G182600 chr7D 84.932 219 27 6 2962 3177 305830206 305829991 3.500000e-52 217.0
30 TraesCS5D01G182600 chr7D 84.615 117 18 0 4654 4770 305828185 305828069 3.650000e-22 117.0
31 TraesCS5D01G182600 chr7A 85.560 277 40 0 2579 2855 342614439 342614715 2.030000e-74 291.0
32 TraesCS5D01G182600 chr7A 84.018 219 29 6 2962 3177 342614957 342615172 7.580000e-49 206.0
33 TraesCS5D01G182600 chr4A 86.154 65 5 2 4485 4549 523449608 523449668 3.730000e-07 67.6
34 TraesCS5D01G182600 chr3A 84.848 66 8 2 5694 5759 632771487 632771550 1.340000e-06 65.8
35 TraesCS5D01G182600 chr4B 84.746 59 9 0 4524 4582 506917795 506917853 6.250000e-05 60.2
36 TraesCS5D01G182600 chr2B 88.889 45 5 0 4529 4573 3395397 3395353 8.080000e-04 56.5
37 TraesCS5D01G182600 chr1A 96.875 32 1 0 4486 4517 52842159 52842190 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G182600 chr5D 283488953 283494724 5771 True 10659.000000 10659 100.000000 1 5772 1 chr5D.!!$R1 5771
1 TraesCS5D01G182600 chr5B 321620394 321625246 4852 True 2609.666667 7107 94.052000 562 5772 3 chr5B.!!$R2 5210
2 TraesCS5D01G182600 chr5B 321639002 321639583 581 True 806.000000 806 91.624000 1 584 1 chr5B.!!$R1 583
3 TraesCS5D01G182600 chr5A 375574657 375579900 5243 True 1587.900000 6194 92.262600 372 5772 5 chr5A.!!$R2 5400
4 TraesCS5D01G182600 chr7B 290014844 290017516 2672 True 202.333333 279 84.642667 2579 4770 3 chr7B.!!$R2 2191
5 TraesCS5D01G182600 chr7D 305828069 305830724 2655 True 204.333333 279 84.795000 2579 4770 3 chr7D.!!$R1 2191
6 TraesCS5D01G182600 chr7A 342614439 342615172 733 False 248.500000 291 84.789000 2579 3177 2 chr7A.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 397 0.242825 TGGTCATCTTGGACGACGAC 59.757 55.0 0.00 0.00 38.70 4.34 F
1463 1510 0.037697 TTTCACGATGGTCCTGTCGG 60.038 55.0 17.59 9.42 41.87 4.79 F
2433 2532 1.528129 GTCCTGCAGTTTCCTTGGAG 58.472 55.0 13.81 0.00 34.22 3.86 F
3833 4192 5.163457 CCTCCCTCAAGTCTAGTTTCTCATC 60.163 48.0 0.00 0.00 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1617 2.091852 GTCTTCAGGACTTGAGCCAG 57.908 55.0 0.00 0.00 41.46 4.85 R
2549 2651 5.874810 GGAAAAGGCAAGAGAACAAAAACTT 59.125 36.0 0.00 0.00 0.00 2.66 R
4088 4447 2.031682 CGCCACTTTCAGAAAGGACTTG 60.032 50.0 24.02 14.05 42.82 3.16 R
5479 6231 0.320421 TTCGAGAAGCCGTTTGAGGG 60.320 55.0 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.019785 ACTAGATGAAATTCCCGTGTACC 57.980 43.478 0.00 0.00 0.00 3.34
40 41 3.277142 AGATGAAATTCCCGTGTACCC 57.723 47.619 0.00 0.00 0.00 3.69
79 80 7.714813 TGATTATCATAAGAGATCGTTTTGGCA 59.285 33.333 0.00 0.00 0.00 4.92
84 85 2.359900 AGAGATCGTTTTGGCATGTCC 58.640 47.619 0.00 0.00 0.00 4.02
103 104 2.477845 CTTTGCCCCAAAAGGATTGG 57.522 50.000 0.15 0.15 38.24 3.16
118 119 0.967380 ATTGGGCTACCTTGCTGCAC 60.967 55.000 0.00 0.00 37.76 4.57
127 128 3.436700 ACCTTGCTGCACTTTTGTTAC 57.563 42.857 0.00 0.00 0.00 2.50
139 140 5.852755 GCACTTTTGTTACCATTACCGTTAC 59.147 40.000 0.00 0.00 0.00 2.50
146 147 2.613691 ACCATTACCGTTACTTGCTCG 58.386 47.619 0.00 0.00 0.00 5.03
154 155 4.060205 ACCGTTACTTGCTCGTTACAAAT 58.940 39.130 0.00 0.00 0.00 2.32
181 182 7.988904 ATCTTGCTATCAAACTACTCGTTAC 57.011 36.000 0.00 0.00 33.90 2.50
213 214 3.126514 CAGTGCTTGCAGAGAATACCTTG 59.873 47.826 0.00 0.00 0.00 3.61
216 217 3.055167 TGCTTGCAGAGAATACCTTGCTA 60.055 43.478 0.00 0.00 0.00 3.49
224 225 7.119262 TGCAGAGAATACCTTGCTAAAAACTAC 59.881 37.037 0.00 0.00 0.00 2.73
235 236 8.968242 CCTTGCTAAAAACTACTTGTCATTTTC 58.032 33.333 0.00 0.00 0.00 2.29
246 247 5.136105 ACTTGTCATTTTCTTCTGCTCCTT 58.864 37.500 0.00 0.00 0.00 3.36
251 252 4.279169 TCATTTTCTTCTGCTCCTTGTTGG 59.721 41.667 0.00 0.00 37.10 3.77
272 273 4.142534 TGGGTTCGACACTCTTACTTATCG 60.143 45.833 0.00 0.00 0.00 2.92
277 278 7.020010 GTTCGACACTCTTACTTATCGAAAGA 58.980 38.462 8.30 5.57 46.48 2.52
301 302 8.783093 AGATCTACGACTGATCTTCTATTCTTG 58.217 37.037 0.00 0.00 45.74 3.02
387 388 1.577736 AGGAGGAGGTGGTCATCTTG 58.422 55.000 0.00 0.00 36.18 3.02
396 397 0.242825 TGGTCATCTTGGACGACGAC 59.757 55.000 0.00 0.00 38.70 4.34
553 562 9.720667 TGTATCTCAATGCTAATTTCGAATTTG 57.279 29.630 14.02 6.51 0.00 2.32
554 563 9.935682 GTATCTCAATGCTAATTTCGAATTTGA 57.064 29.630 14.02 0.00 0.00 2.69
672 686 4.763073 CTCACTGCAGAATATTCCTGTCA 58.237 43.478 23.35 10.24 34.29 3.58
673 687 5.363562 TCACTGCAGAATATTCCTGTCAT 57.636 39.130 23.35 0.00 34.29 3.06
674 688 6.484364 TCACTGCAGAATATTCCTGTCATA 57.516 37.500 23.35 0.00 34.29 2.15
826 847 1.498865 GCACACACAGACACGGGAAG 61.499 60.000 0.00 0.00 0.00 3.46
869 890 0.601311 ACTCTCACAGCCGCTGAAAC 60.601 55.000 27.12 0.00 35.18 2.78
879 900 3.952811 GCTGAAACGGAGAAGCGT 58.047 55.556 0.00 0.00 0.00 5.07
880 901 1.782181 GCTGAAACGGAGAAGCGTC 59.218 57.895 0.00 0.00 0.00 5.19
881 902 1.627550 GCTGAAACGGAGAAGCGTCC 61.628 60.000 0.00 0.00 0.00 4.79
887 908 2.654877 GGAGAAGCGTCCGTCCAA 59.345 61.111 3.52 0.00 0.00 3.53
888 909 1.737008 GGAGAAGCGTCCGTCCAAC 60.737 63.158 3.52 0.00 0.00 3.77
889 910 1.006571 GAGAAGCGTCCGTCCAACA 60.007 57.895 0.00 0.00 0.00 3.33
890 911 1.006102 AGAAGCGTCCGTCCAACAG 60.006 57.895 0.00 0.00 0.00 3.16
891 912 1.300697 GAAGCGTCCGTCCAACAGT 60.301 57.895 0.00 0.00 0.00 3.55
935 970 4.416738 GCCAGCCCCACCTCAGAC 62.417 72.222 0.00 0.00 0.00 3.51
936 971 3.721706 CCAGCCCCACCTCAGACC 61.722 72.222 0.00 0.00 0.00 3.85
937 972 2.608988 CAGCCCCACCTCAGACCT 60.609 66.667 0.00 0.00 0.00 3.85
938 973 2.284995 AGCCCCACCTCAGACCTC 60.285 66.667 0.00 0.00 0.00 3.85
939 974 2.607750 GCCCCACCTCAGACCTCA 60.608 66.667 0.00 0.00 0.00 3.86
1086 1121 1.068753 CGCCGCATTCTCTCCTCAT 59.931 57.895 0.00 0.00 0.00 2.90
1237 1272 2.131709 CCCGCCGATCACCTTCCTA 61.132 63.158 0.00 0.00 0.00 2.94
1238 1273 1.682451 CCCGCCGATCACCTTCCTAA 61.682 60.000 0.00 0.00 0.00 2.69
1264 1304 8.062065 ACACTTTTCTTTGACATTTACCTTCA 57.938 30.769 0.00 0.00 0.00 3.02
1268 1308 7.831691 TTTCTTTGACATTTACCTTCATCCA 57.168 32.000 0.00 0.00 0.00 3.41
1371 1418 3.074412 CGATGCGGCTCCCTTATTTTAT 58.926 45.455 0.00 0.00 0.00 1.40
1372 1419 3.502211 CGATGCGGCTCCCTTATTTTATT 59.498 43.478 0.00 0.00 0.00 1.40
1373 1420 4.023193 CGATGCGGCTCCCTTATTTTATTT 60.023 41.667 0.00 0.00 0.00 1.40
1374 1421 5.507315 CGATGCGGCTCCCTTATTTTATTTT 60.507 40.000 0.00 0.00 0.00 1.82
1375 1422 6.293735 CGATGCGGCTCCCTTATTTTATTTTA 60.294 38.462 0.00 0.00 0.00 1.52
1463 1510 0.037697 TTTCACGATGGTCCTGTCGG 60.038 55.000 17.59 9.42 41.87 4.79
1548 1599 9.822185 GAATTATTTACTCCATGCCTTCAATTT 57.178 29.630 0.00 0.00 0.00 1.82
1598 1650 4.772624 TCCTGAAGACTGTACTGCTAACAT 59.227 41.667 0.00 0.00 0.00 2.71
1605 1670 5.707298 AGACTGTACTGCTAACATTTTGCAT 59.293 36.000 0.00 0.00 36.07 3.96
1606 1671 6.207417 AGACTGTACTGCTAACATTTTGCATT 59.793 34.615 0.00 0.00 36.07 3.56
1609 1674 8.356657 ACTGTACTGCTAACATTTTGCATTTTA 58.643 29.630 0.00 0.00 36.07 1.52
1610 1675 9.190858 CTGTACTGCTAACATTTTGCATTTTAA 57.809 29.630 0.00 0.00 36.07 1.52
1611 1676 9.703892 TGTACTGCTAACATTTTGCATTTTAAT 57.296 25.926 0.00 0.00 36.07 1.40
1898 1963 6.238320 GCAATGTGTCCAAGATCTATGTTCTC 60.238 42.308 0.00 0.00 0.00 2.87
2063 2134 6.813293 TGGTTGATTCATCTTCCATCTAGA 57.187 37.500 0.00 0.00 0.00 2.43
2064 2135 7.384524 TGGTTGATTCATCTTCCATCTAGAT 57.615 36.000 0.00 0.00 32.66 1.98
2065 2136 7.448420 TGGTTGATTCATCTTCCATCTAGATC 58.552 38.462 1.03 0.00 30.05 2.75
2066 2137 7.291885 TGGTTGATTCATCTTCCATCTAGATCT 59.708 37.037 1.03 0.00 30.05 2.75
2067 2138 8.811017 GGTTGATTCATCTTCCATCTAGATCTA 58.189 37.037 1.03 1.69 30.05 1.98
2068 2139 9.859427 GTTGATTCATCTTCCATCTAGATCTAG 57.141 37.037 21.81 21.81 30.05 2.43
2433 2532 1.528129 GTCCTGCAGTTTCCTTGGAG 58.472 55.000 13.81 0.00 34.22 3.86
3833 4192 5.163457 CCTCCCTCAAGTCTAGTTTCTCATC 60.163 48.000 0.00 0.00 0.00 2.92
4088 4447 1.266718 TGCAGACGGAAAATGACAAGC 59.733 47.619 0.00 0.00 0.00 4.01
4287 4646 1.144913 TCTGGGGTGAAAACAAGAGGG 59.855 52.381 0.00 0.00 0.00 4.30
4753 5484 2.018542 TCAAGGACGCCTTAATTCCG 57.981 50.000 10.23 0.00 42.67 4.30
4846 5577 7.561556 CAAACAGAAATTTCTTGTCTTGATGC 58.438 34.615 18.16 0.00 34.74 3.91
4847 5578 6.645790 ACAGAAATTTCTTGTCTTGATGCT 57.354 33.333 18.16 0.00 34.74 3.79
4848 5579 7.047460 ACAGAAATTTCTTGTCTTGATGCTT 57.953 32.000 18.16 0.00 34.74 3.91
4910 5641 8.829612 CCAACATGCTCTTTTCTTTGTTATTTT 58.170 29.630 0.00 0.00 0.00 1.82
5039 5770 1.867166 TCATTCCGTTTGCACGTACA 58.133 45.000 0.00 0.00 45.62 2.90
5069 5800 4.616181 ACTTCACTTTGAAAACTGACCG 57.384 40.909 0.00 0.00 35.73 4.79
5104 5835 1.142870 AGGTTGGCTTGCAGACTTACA 59.857 47.619 0.00 0.00 0.00 2.41
5172 5910 0.952280 GCATCGACTCGGGAGTATCA 59.048 55.000 0.48 0.00 42.66 2.15
5258 5997 9.630098 AGTATATGAGCAAATGTTTTGAAGTTG 57.370 29.630 4.24 0.00 0.00 3.16
5267 6006 7.063308 GCAAATGTTTTGAAGTTGAAGTCTGAA 59.937 33.333 4.24 0.00 0.00 3.02
5306 6045 5.070770 TGGATGTTTTGGCATGTACAATC 57.929 39.130 0.00 0.00 0.00 2.67
5388 6129 0.894141 CATCTCTAGCCGATCCCCTG 59.106 60.000 0.00 0.00 0.00 4.45
5389 6130 0.485099 ATCTCTAGCCGATCCCCTGT 59.515 55.000 0.00 0.00 0.00 4.00
5406 6148 3.954258 CCCTGTAATTTAGCCCCTCAAAG 59.046 47.826 0.00 0.00 0.00 2.77
5461 6213 8.664211 AAGGAGTTAATAAAAATCTCTAGCCG 57.336 34.615 0.00 0.00 0.00 5.52
5462 6214 8.019656 AGGAGTTAATAAAAATCTCTAGCCGA 57.980 34.615 0.00 0.00 0.00 5.54
5463 6215 8.652290 AGGAGTTAATAAAAATCTCTAGCCGAT 58.348 33.333 0.00 0.00 0.00 4.18
5464 6216 8.927721 GGAGTTAATAAAAATCTCTAGCCGATC 58.072 37.037 0.00 0.00 0.00 3.69
5465 6217 9.699703 GAGTTAATAAAAATCTCTAGCCGATCT 57.300 33.333 0.00 0.00 0.00 2.75
5466 6218 9.699703 AGTTAATAAAAATCTCTAGCCGATCTC 57.300 33.333 0.00 0.00 0.00 2.75
5467 6219 8.927721 GTTAATAAAAATCTCTAGCCGATCTCC 58.072 37.037 0.00 0.00 0.00 3.71
5468 6220 6.926630 ATAAAAATCTCTAGCCGATCTCCT 57.073 37.500 0.00 0.00 0.00 3.69
5469 6221 8.423906 AATAAAAATCTCTAGCCGATCTCCTA 57.576 34.615 0.00 0.00 0.00 2.94
5470 6222 6.926630 AAAAATCTCTAGCCGATCTCCTAT 57.073 37.500 0.00 0.00 0.00 2.57
5471 6223 9.702253 ATAAAAATCTCTAGCCGATCTCCTATA 57.298 33.333 0.00 0.00 0.00 1.31
5472 6224 8.423906 AAAAATCTCTAGCCGATCTCCTATAA 57.576 34.615 0.00 0.00 0.00 0.98
5473 6225 8.602472 AAAATCTCTAGCCGATCTCCTATAAT 57.398 34.615 0.00 0.00 0.00 1.28
5474 6226 8.602472 AAATCTCTAGCCGATCTCCTATAATT 57.398 34.615 0.00 0.00 0.00 1.40
5475 6227 8.602472 AATCTCTAGCCGATCTCCTATAATTT 57.398 34.615 0.00 0.00 0.00 1.82
5476 6228 9.702253 AATCTCTAGCCGATCTCCTATAATTTA 57.298 33.333 0.00 0.00 0.00 1.40
5477 6229 8.740123 TCTCTAGCCGATCTCCTATAATTTAG 57.260 38.462 0.00 0.00 0.00 1.85
5478 6230 7.283580 TCTCTAGCCGATCTCCTATAATTTAGC 59.716 40.741 0.00 0.00 0.00 3.09
5479 6231 5.346181 AGCCGATCTCCTATAATTTAGCC 57.654 43.478 0.00 0.00 0.00 3.93
5480 6232 4.162509 AGCCGATCTCCTATAATTTAGCCC 59.837 45.833 0.00 0.00 0.00 5.19
5481 6233 4.683671 GCCGATCTCCTATAATTTAGCCCC 60.684 50.000 0.00 0.00 0.00 5.80
5482 6234 4.717280 CCGATCTCCTATAATTTAGCCCCT 59.283 45.833 0.00 0.00 0.00 4.79
5483 6235 5.163395 CCGATCTCCTATAATTTAGCCCCTC 60.163 48.000 0.00 0.00 0.00 4.30
5484 6236 5.422331 CGATCTCCTATAATTTAGCCCCTCA 59.578 44.000 0.00 0.00 0.00 3.86
5485 6237 6.070767 CGATCTCCTATAATTTAGCCCCTCAA 60.071 42.308 0.00 0.00 0.00 3.02
5486 6238 7.527196 CGATCTCCTATAATTTAGCCCCTCAAA 60.527 40.741 0.00 0.00 0.00 2.69
5487 6239 6.838382 TCTCCTATAATTTAGCCCCTCAAAC 58.162 40.000 0.00 0.00 0.00 2.93
5488 6240 5.617252 TCCTATAATTTAGCCCCTCAAACG 58.383 41.667 0.00 0.00 0.00 3.60
5489 6241 4.760204 CCTATAATTTAGCCCCTCAAACGG 59.240 45.833 0.00 0.00 0.00 4.44
5490 6242 1.182667 AATTTAGCCCCTCAAACGGC 58.817 50.000 0.00 0.00 46.09 5.68
5494 6246 2.034221 GCCCCTCAAACGGCTTCT 59.966 61.111 0.00 0.00 42.21 2.85
5495 6247 2.041115 GCCCCTCAAACGGCTTCTC 61.041 63.158 0.00 0.00 42.21 2.87
5496 6248 1.741770 CCCCTCAAACGGCTTCTCG 60.742 63.158 0.00 0.00 0.00 4.04
5497 6249 1.292223 CCCTCAAACGGCTTCTCGA 59.708 57.895 0.00 0.00 0.00 4.04
5498 6250 0.320421 CCCTCAAACGGCTTCTCGAA 60.320 55.000 0.00 0.00 0.00 3.71
5499 6251 0.790814 CCTCAAACGGCTTCTCGAAC 59.209 55.000 0.00 0.00 0.00 3.95
5500 6252 0.790814 CTCAAACGGCTTCTCGAACC 59.209 55.000 0.00 0.00 0.00 3.62
5501 6253 0.391597 TCAAACGGCTTCTCGAACCT 59.608 50.000 0.00 0.00 0.00 3.50
5502 6254 1.202604 TCAAACGGCTTCTCGAACCTT 60.203 47.619 0.00 0.00 0.00 3.50
5503 6255 2.036217 TCAAACGGCTTCTCGAACCTTA 59.964 45.455 0.00 0.00 0.00 2.69
5504 6256 3.000727 CAAACGGCTTCTCGAACCTTAT 58.999 45.455 0.00 0.00 0.00 1.73
5505 6257 2.580966 ACGGCTTCTCGAACCTTATC 57.419 50.000 0.00 0.00 0.00 1.75
5506 6258 2.100989 ACGGCTTCTCGAACCTTATCT 58.899 47.619 0.00 0.00 0.00 1.98
5507 6259 2.099427 ACGGCTTCTCGAACCTTATCTC 59.901 50.000 0.00 0.00 0.00 2.75
5508 6260 2.544069 CGGCTTCTCGAACCTTATCTCC 60.544 54.545 0.00 0.00 0.00 3.71
5509 6261 2.696187 GGCTTCTCGAACCTTATCTCCT 59.304 50.000 0.00 0.00 0.00 3.69
5510 6262 3.133183 GGCTTCTCGAACCTTATCTCCTT 59.867 47.826 0.00 0.00 0.00 3.36
5511 6263 4.341520 GGCTTCTCGAACCTTATCTCCTTA 59.658 45.833 0.00 0.00 0.00 2.69
5512 6264 5.283294 GCTTCTCGAACCTTATCTCCTTAC 58.717 45.833 0.00 0.00 0.00 2.34
5513 6265 5.163540 GCTTCTCGAACCTTATCTCCTTACA 60.164 44.000 0.00 0.00 0.00 2.41
5514 6266 6.461788 GCTTCTCGAACCTTATCTCCTTACAT 60.462 42.308 0.00 0.00 0.00 2.29
5515 6267 7.419711 TTCTCGAACCTTATCTCCTTACATT 57.580 36.000 0.00 0.00 0.00 2.71
5516 6268 7.419711 TCTCGAACCTTATCTCCTTACATTT 57.580 36.000 0.00 0.00 0.00 2.32
5517 6269 8.529424 TCTCGAACCTTATCTCCTTACATTTA 57.471 34.615 0.00 0.00 0.00 1.40
5518 6270 8.974238 TCTCGAACCTTATCTCCTTACATTTAA 58.026 33.333 0.00 0.00 0.00 1.52
5519 6271 9.250624 CTCGAACCTTATCTCCTTACATTTAAG 57.749 37.037 0.00 0.00 35.35 1.85
5561 6313 7.363268 GGTTCCTAGTCGAACTCCTAAATGTTA 60.363 40.741 10.50 0.00 41.58 2.41
5563 6315 7.542025 TCCTAGTCGAACTCCTAAATGTTAAC 58.458 38.462 0.00 0.00 0.00 2.01
5564 6316 7.395489 TCCTAGTCGAACTCCTAAATGTTAACT 59.605 37.037 7.22 0.00 0.00 2.24
5565 6317 7.701501 CCTAGTCGAACTCCTAAATGTTAACTC 59.298 40.741 7.22 0.00 0.00 3.01
5650 6405 7.488187 CATATTTGCACACATACTAAGAGCT 57.512 36.000 0.00 0.00 0.00 4.09
5651 6406 7.923888 CATATTTGCACACATACTAAGAGCTT 58.076 34.615 0.00 0.00 0.00 3.74
5652 6407 5.611796 TTTGCACACATACTAAGAGCTTG 57.388 39.130 0.00 0.00 0.00 4.01
5653 6408 4.535526 TGCACACATACTAAGAGCTTGA 57.464 40.909 0.00 0.00 0.00 3.02
5655 6410 4.021104 TGCACACATACTAAGAGCTTGACT 60.021 41.667 0.00 0.00 0.00 3.41
5656 6411 4.564769 GCACACATACTAAGAGCTTGACTC 59.435 45.833 0.00 0.00 46.66 3.36
5664 6419 2.549332 GAGCTTGACTCAGGGCAAC 58.451 57.895 0.00 0.84 45.49 4.17
5665 6420 0.036022 GAGCTTGACTCAGGGCAACT 59.964 55.000 0.00 0.00 45.49 3.16
5666 6421 0.475906 AGCTTGACTCAGGGCAACTT 59.524 50.000 8.23 0.00 0.00 2.66
5667 6422 1.133668 AGCTTGACTCAGGGCAACTTT 60.134 47.619 8.23 0.00 0.00 2.66
5709 6476 7.208064 ACAGGCCCTAAATCTAAACTTGATA 57.792 36.000 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.708222 CTTATGATAATCAAAACGTTCTTGAGG 57.292 33.333 21.66 4.20 36.30 3.86
69 70 1.269517 GCAAAGGACATGCCAAAACGA 60.270 47.619 8.58 0.00 40.02 3.85
79 80 1.132881 TCCTTTTGGGGCAAAGGACAT 60.133 47.619 12.17 0.00 40.87 3.06
84 85 2.477845 CCAATCCTTTTGGGGCAAAG 57.522 50.000 0.00 0.00 40.87 2.77
91 92 2.497273 CAAGGTAGCCCAATCCTTTTGG 59.503 50.000 0.00 0.00 39.22 3.28
103 104 0.961753 AAAAGTGCAGCAAGGTAGCC 59.038 50.000 0.00 0.00 34.23 3.93
104 105 1.338020 ACAAAAGTGCAGCAAGGTAGC 59.662 47.619 0.00 0.00 0.00 3.58
127 128 2.613691 ACGAGCAAGTAACGGTAATGG 58.386 47.619 0.00 0.00 0.00 3.16
139 140 7.023575 AGCAAGATAAATTTGTAACGAGCAAG 58.976 34.615 0.00 0.00 0.00 4.01
154 155 8.997621 AACGAGTAGTTTGATAGCAAGATAAA 57.002 30.769 0.00 0.00 40.88 1.40
181 182 5.819379 TCTCTGCAAGCACTGGAATTATAAG 59.181 40.000 0.00 0.00 0.00 1.73
190 191 2.012673 GGTATTCTCTGCAAGCACTGG 58.987 52.381 0.00 0.00 0.00 4.00
213 214 9.952188 AGAAGAAAATGACAAGTAGTTTTTAGC 57.048 29.630 0.00 0.00 0.00 3.09
216 217 8.470002 AGCAGAAGAAAATGACAAGTAGTTTTT 58.530 29.630 0.00 0.00 0.00 1.94
224 225 5.009410 ACAAGGAGCAGAAGAAAATGACAAG 59.991 40.000 0.00 0.00 0.00 3.16
235 236 1.882623 GAACCCAACAAGGAGCAGAAG 59.117 52.381 0.00 0.00 41.22 2.85
246 247 2.696707 AGTAAGAGTGTCGAACCCAACA 59.303 45.455 0.00 0.00 0.00 3.33
251 252 5.227238 TCGATAAGTAAGAGTGTCGAACC 57.773 43.478 0.00 0.00 35.48 3.62
277 278 8.349245 CACAAGAATAGAAGATCAGTCGTAGAT 58.651 37.037 0.00 0.00 40.67 1.98
278 279 7.201741 CCACAAGAATAGAAGATCAGTCGTAGA 60.202 40.741 0.00 0.00 0.00 2.59
285 286 5.982356 TGACCCACAAGAATAGAAGATCAG 58.018 41.667 0.00 0.00 0.00 2.90
291 292 4.503910 CGTGATGACCCACAAGAATAGAA 58.496 43.478 0.00 0.00 36.89 2.10
292 293 3.678806 GCGTGATGACCCACAAGAATAGA 60.679 47.826 0.00 0.00 36.89 1.98
387 388 3.384014 CTGCTCCTCGTCGTCGTCC 62.384 68.421 1.33 0.00 38.33 4.79
423 424 2.159476 GGAGTTGTCGTGCGTACTCATA 60.159 50.000 17.83 0.00 38.96 2.15
425 426 0.039798 GGAGTTGTCGTGCGTACTCA 60.040 55.000 17.83 0.00 38.96 3.41
435 436 2.805353 CGACCGCTGGAGTTGTCG 60.805 66.667 1.50 0.00 43.64 4.35
486 494 1.468127 CAATGTGCACAAGGTATGCGA 59.532 47.619 25.72 0.00 46.49 5.10
516 524 7.230849 AGCATTGAGATACAAAAATTGGTCA 57.769 32.000 0.00 0.00 42.03 4.02
517 525 9.807649 ATTAGCATTGAGATACAAAAATTGGTC 57.192 29.630 0.00 0.00 42.03 4.02
550 559 9.816787 ACAACCCCTAGAAAAAGTATATTCAAA 57.183 29.630 0.00 0.00 0.00 2.69
553 562 9.557061 CCTACAACCCCTAGAAAAAGTATATTC 57.443 37.037 0.00 0.00 0.00 1.75
554 563 7.997223 GCCTACAACCCCTAGAAAAAGTATATT 59.003 37.037 0.00 0.00 0.00 1.28
555 564 7.128263 TGCCTACAACCCCTAGAAAAAGTATAT 59.872 37.037 0.00 0.00 0.00 0.86
556 565 6.444493 TGCCTACAACCCCTAGAAAAAGTATA 59.556 38.462 0.00 0.00 0.00 1.47
557 566 5.252164 TGCCTACAACCCCTAGAAAAAGTAT 59.748 40.000 0.00 0.00 0.00 2.12
558 567 4.598373 TGCCTACAACCCCTAGAAAAAGTA 59.402 41.667 0.00 0.00 0.00 2.24
559 568 3.396611 TGCCTACAACCCCTAGAAAAAGT 59.603 43.478 0.00 0.00 0.00 2.66
560 569 3.756963 GTGCCTACAACCCCTAGAAAAAG 59.243 47.826 0.00 0.00 0.00 2.27
591 600 1.980765 TCAGGCCAACTCTGATGTTCT 59.019 47.619 5.01 0.00 36.46 3.01
624 638 4.038522 TCTCTCTCAGGACAACTCTGTTTG 59.961 45.833 0.00 0.00 35.30 2.93
625 639 4.219115 TCTCTCTCAGGACAACTCTGTTT 58.781 43.478 0.00 0.00 35.30 2.83
873 894 1.300697 ACTGTTGGACGGACGCTTC 60.301 57.895 0.00 0.00 0.00 3.86
874 895 1.594293 CACTGTTGGACGGACGCTT 60.594 57.895 0.00 0.00 0.00 4.68
875 896 1.457823 TACACTGTTGGACGGACGCT 61.458 55.000 0.00 0.00 0.00 5.07
876 897 1.007038 TACACTGTTGGACGGACGC 60.007 57.895 0.00 0.00 0.00 5.19
877 898 2.805277 GTACACTGTTGGACGGACG 58.195 57.895 0.00 0.00 0.00 4.79
882 903 0.580104 GCACACGTACACTGTTGGAC 59.420 55.000 0.00 0.00 32.44 4.02
883 904 0.872451 CGCACACGTACACTGTTGGA 60.872 55.000 0.00 0.00 33.53 3.53
884 905 1.562691 CGCACACGTACACTGTTGG 59.437 57.895 0.00 0.00 33.53 3.77
885 906 1.083657 GCGCACACGTACACTGTTG 60.084 57.895 0.30 0.00 42.83 3.33
886 907 2.582265 CGCGCACACGTACACTGTT 61.582 57.895 8.75 0.00 42.83 3.16
887 908 3.028019 CGCGCACACGTACACTGT 61.028 61.111 8.75 0.00 42.83 3.55
888 909 4.409588 GCGCGCACACGTACACTG 62.410 66.667 29.10 0.00 42.83 3.66
933 968 3.462678 GGGCGAGGGAGTGAGGTC 61.463 72.222 0.00 0.00 0.00 3.85
934 969 3.966930 GAGGGCGAGGGAGTGAGGT 62.967 68.421 0.00 0.00 0.00 3.85
935 970 3.151022 GAGGGCGAGGGAGTGAGG 61.151 72.222 0.00 0.00 0.00 3.86
936 971 2.043450 AGAGGGCGAGGGAGTGAG 60.043 66.667 0.00 0.00 0.00 3.51
937 972 2.043852 GAGAGGGCGAGGGAGTGA 60.044 66.667 0.00 0.00 0.00 3.41
938 973 2.043450 AGAGAGGGCGAGGGAGTG 60.043 66.667 0.00 0.00 0.00 3.51
939 974 2.277404 GAGAGAGGGCGAGGGAGT 59.723 66.667 0.00 0.00 0.00 3.85
1237 1272 9.366216 GAAGGTAAATGTCAAAGAAAAGTGTTT 57.634 29.630 0.00 0.00 0.00 2.83
1238 1273 8.527810 TGAAGGTAAATGTCAAAGAAAAGTGTT 58.472 29.630 0.00 0.00 0.00 3.32
1264 1304 7.391148 AAAAGTCGCATAATAAAGTGTGGAT 57.609 32.000 0.00 0.00 0.00 3.41
1268 1308 6.456449 CGGCTAAAAGTCGCATAATAAAGTGT 60.456 38.462 0.00 0.00 36.16 3.55
1463 1510 3.211963 CTACCCCAATGCGGCAGC 61.212 66.667 9.25 0.31 45.41 5.25
1510 1560 6.243216 AGTAAATAATTCTACGCCTTCCCA 57.757 37.500 0.00 0.00 0.00 4.37
1565 1617 2.091852 GTCTTCAGGACTTGAGCCAG 57.908 55.000 0.00 0.00 41.46 4.85
1619 1684 9.770097 CAGGTTTATGTACTTCTATCACATGAT 57.230 33.333 0.00 0.00 38.51 2.45
1620 1685 8.977412 TCAGGTTTATGTACTTCTATCACATGA 58.023 33.333 0.00 0.00 34.78 3.07
1621 1686 9.254133 CTCAGGTTTATGTACTTCTATCACATG 57.746 37.037 0.00 0.00 34.78 3.21
1696 1761 2.282407 CATCAGTTGGATGTGATGCGA 58.718 47.619 0.00 0.00 46.81 5.10
2022 2087 2.105993 ACCAAGGTACCTGAAACCAGTC 59.894 50.000 17.14 0.00 39.64 3.51
2549 2651 5.874810 GGAAAAGGCAAGAGAACAAAAACTT 59.125 36.000 0.00 0.00 0.00 2.66
4088 4447 2.031682 CGCCACTTTCAGAAAGGACTTG 60.032 50.000 24.02 14.05 42.82 3.16
4287 4646 7.902087 AGTCTATTTATGTTCAGATAGAGCCC 58.098 38.462 0.00 0.00 33.20 5.19
4753 5484 3.413327 TCTCTATATGACTGTCCCGCTC 58.587 50.000 5.17 0.00 0.00 5.03
4846 5577 6.541641 AGTGCAGAAGCCATAATAAGAAGAAG 59.458 38.462 0.00 0.00 41.13 2.85
4847 5578 6.418101 AGTGCAGAAGCCATAATAAGAAGAA 58.582 36.000 0.00 0.00 41.13 2.52
4848 5579 5.994250 AGTGCAGAAGCCATAATAAGAAGA 58.006 37.500 0.00 0.00 41.13 2.87
4922 5653 0.535335 TCCACGGTTATGGCAGAGAC 59.465 55.000 0.00 0.00 39.85 3.36
4986 5717 4.818546 CACTCAAGTAAAGGCATAGGGATG 59.181 45.833 0.00 0.00 36.02 3.51
5039 5770 7.864379 CAGTTTTCAAAGTGAAGTATGATTGCT 59.136 33.333 1.40 0.00 40.88 3.91
5104 5835 0.994247 TGGATGCATTGGAGGTCACT 59.006 50.000 0.00 0.00 0.00 3.41
5172 5910 4.007659 ACTGTTTTATTCTTTCCGCCGAT 58.992 39.130 0.00 0.00 0.00 4.18
5258 5997 8.465201 AGATTCCTAATGCAATTTTCAGACTTC 58.535 33.333 0.00 0.00 37.87 3.01
5267 6006 7.427989 AACATCCAGATTCCTAATGCAATTT 57.572 32.000 0.00 0.00 37.87 1.82
5306 6045 5.105146 AGCCTAGAGACTACAAAAGGACATG 60.105 44.000 0.00 0.00 0.00 3.21
5380 6121 2.716969 AGGGGCTAAATTACAGGGGATC 59.283 50.000 0.00 0.00 0.00 3.36
5406 6148 3.082548 GGAGTTAAGGTTTGAGAAGCCC 58.917 50.000 0.00 0.00 33.79 5.19
5452 6204 7.283580 GCTAAATTATAGGAGATCGGCTAGAGA 59.716 40.741 0.00 0.00 0.00 3.10
5453 6205 7.422399 GCTAAATTATAGGAGATCGGCTAGAG 58.578 42.308 0.00 0.00 0.00 2.43
5454 6206 6.321690 GGCTAAATTATAGGAGATCGGCTAGA 59.678 42.308 0.00 0.00 0.00 2.43
5455 6207 6.461788 GGGCTAAATTATAGGAGATCGGCTAG 60.462 46.154 0.00 0.00 0.00 3.42
5456 6208 5.363005 GGGCTAAATTATAGGAGATCGGCTA 59.637 44.000 0.00 0.00 0.00 3.93
5457 6209 4.162509 GGGCTAAATTATAGGAGATCGGCT 59.837 45.833 0.00 0.00 0.00 5.52
5458 6210 4.443621 GGGCTAAATTATAGGAGATCGGC 58.556 47.826 0.00 0.00 0.00 5.54
5459 6211 4.717280 AGGGGCTAAATTATAGGAGATCGG 59.283 45.833 0.00 0.00 0.00 4.18
5460 6212 5.422331 TGAGGGGCTAAATTATAGGAGATCG 59.578 44.000 0.00 0.00 0.00 3.69
5461 6213 6.875972 TGAGGGGCTAAATTATAGGAGATC 57.124 41.667 0.00 0.00 0.00 2.75
5462 6214 7.462590 GTTTGAGGGGCTAAATTATAGGAGAT 58.537 38.462 0.00 0.00 0.00 2.75
5463 6215 6.463897 CGTTTGAGGGGCTAAATTATAGGAGA 60.464 42.308 0.00 0.00 0.00 3.71
5464 6216 5.701290 CGTTTGAGGGGCTAAATTATAGGAG 59.299 44.000 0.00 0.00 0.00 3.69
5465 6217 5.455612 CCGTTTGAGGGGCTAAATTATAGGA 60.456 44.000 0.00 0.00 0.00 2.94
5466 6218 4.760204 CCGTTTGAGGGGCTAAATTATAGG 59.240 45.833 0.00 0.00 0.00 2.57
5467 6219 4.215613 GCCGTTTGAGGGGCTAAATTATAG 59.784 45.833 0.00 0.00 45.93 1.31
5468 6220 4.139038 GCCGTTTGAGGGGCTAAATTATA 58.861 43.478 0.00 0.00 45.93 0.98
5469 6221 2.956333 GCCGTTTGAGGGGCTAAATTAT 59.044 45.455 0.00 0.00 45.93 1.28
5470 6222 2.371306 GCCGTTTGAGGGGCTAAATTA 58.629 47.619 0.00 0.00 45.93 1.40
5471 6223 1.182667 GCCGTTTGAGGGGCTAAATT 58.817 50.000 0.00 0.00 45.93 1.82
5472 6224 2.882170 GCCGTTTGAGGGGCTAAAT 58.118 52.632 0.00 0.00 45.93 1.40
5473 6225 4.408378 GCCGTTTGAGGGGCTAAA 57.592 55.556 0.00 0.00 45.93 1.85
5478 6230 1.741770 CGAGAAGCCGTTTGAGGGG 60.742 63.158 0.00 0.00 0.00 4.79
5479 6231 0.320421 TTCGAGAAGCCGTTTGAGGG 60.320 55.000 0.00 0.00 0.00 4.30
5480 6232 0.790814 GTTCGAGAAGCCGTTTGAGG 59.209 55.000 0.00 0.00 0.00 3.86
5481 6233 0.790814 GGTTCGAGAAGCCGTTTGAG 59.209 55.000 3.85 0.00 33.03 3.02
5482 6234 0.391597 AGGTTCGAGAAGCCGTTTGA 59.608 50.000 10.91 0.00 39.46 2.69
5483 6235 1.226746 AAGGTTCGAGAAGCCGTTTG 58.773 50.000 10.91 0.00 39.46 2.93
5484 6236 2.825861 TAAGGTTCGAGAAGCCGTTT 57.174 45.000 10.91 3.07 39.46 3.60
5485 6237 2.496470 AGATAAGGTTCGAGAAGCCGTT 59.504 45.455 10.91 3.69 39.46 4.44
5486 6238 2.099427 GAGATAAGGTTCGAGAAGCCGT 59.901 50.000 10.91 3.36 39.46 5.68
5487 6239 2.544069 GGAGATAAGGTTCGAGAAGCCG 60.544 54.545 10.91 0.00 39.46 5.52
5488 6240 2.696187 AGGAGATAAGGTTCGAGAAGCC 59.304 50.000 10.91 4.36 39.46 4.35
5489 6241 4.394439 AAGGAGATAAGGTTCGAGAAGC 57.606 45.455 6.91 6.91 38.96 3.86
5490 6242 6.452494 TGTAAGGAGATAAGGTTCGAGAAG 57.548 41.667 0.00 0.00 0.00 2.85
5491 6243 7.419711 AATGTAAGGAGATAAGGTTCGAGAA 57.580 36.000 0.00 0.00 0.00 2.87
5492 6244 7.419711 AAATGTAAGGAGATAAGGTTCGAGA 57.580 36.000 0.00 0.00 0.00 4.04
5493 6245 9.250624 CTTAAATGTAAGGAGATAAGGTTCGAG 57.749 37.037 0.00 0.00 34.21 4.04
5529 6281 5.001874 GGAGTTCGACTAGGAACCATTTTT 58.998 41.667 7.91 0.00 45.82 1.94
5530 6282 4.286291 AGGAGTTCGACTAGGAACCATTTT 59.714 41.667 7.91 0.00 45.82 1.82
5531 6283 3.838903 AGGAGTTCGACTAGGAACCATTT 59.161 43.478 7.91 0.00 45.82 2.32
5532 6284 3.442076 AGGAGTTCGACTAGGAACCATT 58.558 45.455 7.91 0.00 45.82 3.16
5533 6285 3.103080 AGGAGTTCGACTAGGAACCAT 57.897 47.619 7.91 0.00 45.82 3.55
5534 6286 2.599408 AGGAGTTCGACTAGGAACCA 57.401 50.000 7.91 0.00 45.82 3.67
5561 6313 8.201242 TGGCAAAGAAAATATTTTAGGGAGTT 57.799 30.769 13.34 0.25 0.00 3.01
5563 6315 9.671279 AATTGGCAAAGAAAATATTTTAGGGAG 57.329 29.630 13.34 4.84 0.00 4.30
5564 6316 9.665719 GAATTGGCAAAGAAAATATTTTAGGGA 57.334 29.630 13.34 0.00 0.00 4.20
5565 6317 9.671279 AGAATTGGCAAAGAAAATATTTTAGGG 57.329 29.630 13.34 5.45 0.00 3.53
5644 6399 0.767375 TTGCCCTGAGTCAAGCTCTT 59.233 50.000 14.15 0.00 44.41 2.85
5647 6402 0.475906 AAGTTGCCCTGAGTCAAGCT 59.524 50.000 14.15 0.00 0.00 3.74
5648 6403 1.322442 AAAGTTGCCCTGAGTCAAGC 58.678 50.000 7.68 7.68 0.00 4.01
5649 6404 3.633986 AGAAAAAGTTGCCCTGAGTCAAG 59.366 43.478 0.00 0.00 0.00 3.02
5650 6405 3.381272 CAGAAAAAGTTGCCCTGAGTCAA 59.619 43.478 0.00 0.00 0.00 3.18
5651 6406 2.951642 CAGAAAAAGTTGCCCTGAGTCA 59.048 45.455 0.00 0.00 0.00 3.41
5652 6407 2.294512 CCAGAAAAAGTTGCCCTGAGTC 59.705 50.000 0.00 0.00 0.00 3.36
5653 6408 2.091885 TCCAGAAAAAGTTGCCCTGAGT 60.092 45.455 0.00 0.00 0.00 3.41
5655 6410 2.746279 TCCAGAAAAAGTTGCCCTGA 57.254 45.000 0.00 0.00 0.00 3.86
5656 6411 2.546584 GCTTCCAGAAAAAGTTGCCCTG 60.547 50.000 0.00 0.00 0.00 4.45
5657 6412 1.688735 GCTTCCAGAAAAAGTTGCCCT 59.311 47.619 0.00 0.00 0.00 5.19
5659 6414 2.888834 TGCTTCCAGAAAAAGTTGCC 57.111 45.000 0.00 0.00 0.00 4.52
5660 6415 3.309682 GGTTTGCTTCCAGAAAAAGTTGC 59.690 43.478 0.00 0.00 0.00 4.17
5661 6416 4.502962 TGGTTTGCTTCCAGAAAAAGTTG 58.497 39.130 0.00 0.00 0.00 3.16
5662 6417 4.817318 TGGTTTGCTTCCAGAAAAAGTT 57.183 36.364 0.00 0.00 0.00 2.66
5663 6418 4.817318 TTGGTTTGCTTCCAGAAAAAGT 57.183 36.364 0.00 0.00 36.28 2.66
5664 6419 4.934602 TGTTTGGTTTGCTTCCAGAAAAAG 59.065 37.500 0.00 0.00 36.28 2.27
5665 6420 4.899502 TGTTTGGTTTGCTTCCAGAAAAA 58.100 34.783 0.00 0.00 36.28 1.94
5666 6421 4.502962 CTGTTTGGTTTGCTTCCAGAAAA 58.497 39.130 0.00 0.00 36.28 2.29
5667 6422 3.118811 CCTGTTTGGTTTGCTTCCAGAAA 60.119 43.478 0.00 0.00 36.28 2.52
5709 6476 7.053316 TCATGAATTGTGTGAACCTTCATTT 57.947 32.000 0.00 0.00 39.73 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.