Multiple sequence alignment - TraesCS5D01G182300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G182300 chr5D 100.000 4960 0 0 1 4960 283345710 283340751 0.000000e+00 9160.0
1 TraesCS5D01G182300 chr5D 84.369 531 43 23 4018 4528 283107815 283107305 7.470000e-133 484.0
2 TraesCS5D01G182300 chr5D 92.661 327 17 4 2640 2964 283108212 283107891 9.730000e-127 464.0
3 TraesCS5D01G182300 chr5D 90.968 155 13 1 3513 3667 223647547 223647700 1.810000e-49 207.0
4 TraesCS5D01G182300 chr5D 91.525 118 6 2 4717 4833 283107311 283107197 5.140000e-35 159.0
5 TraesCS5D01G182300 chr5D 98.684 76 1 0 3041 3116 283107891 283107816 8.660000e-28 135.0
6 TraesCS5D01G182300 chr5D 94.318 88 5 0 3576 3663 505561061 505561148 8.660000e-28 135.0
7 TraesCS5D01G182300 chr5D 96.154 52 2 0 3797 3848 223647747 223647798 8.850000e-13 86.1
8 TraesCS5D01G182300 chr5A 91.531 2279 97 32 2179 4408 375551413 375549182 0.000000e+00 3051.0
9 TraesCS5D01G182300 chr5A 91.980 1197 72 9 437 1616 375553240 375552051 0.000000e+00 1657.0
10 TraesCS5D01G182300 chr5A 95.183 436 18 1 1750 2182 375552055 375551620 0.000000e+00 686.0
11 TraesCS5D01G182300 chr5A 90.948 232 21 0 53 284 375553464 375553233 3.730000e-81 313.0
12 TraesCS5D01G182300 chr5A 92.053 151 6 3 1372 1522 375377034 375376890 1.810000e-49 207.0
13 TraesCS5D01G182300 chr5A 80.822 146 14 3 3883 4027 296301821 296301953 8.780000e-18 102.0
14 TraesCS5D01G182300 chr5B 93.372 1554 64 13 655 2182 321533865 321532325 0.000000e+00 2263.0
15 TraesCS5D01G182300 chr5B 94.021 1338 38 11 3200 4508 321531029 321529705 0.000000e+00 1989.0
16 TraesCS5D01G182300 chr5B 90.670 1104 50 23 2179 3244 321532118 321531030 0.000000e+00 1419.0
17 TraesCS5D01G182300 chr5B 95.813 836 31 3 2899 3733 321471737 321470905 0.000000e+00 1347.0
18 TraesCS5D01G182300 chr5B 98.291 234 4 0 3273 3506 321467926 321467693 1.290000e-110 411.0
19 TraesCS5D01G182300 chr5B 85.379 383 22 15 2471 2823 321472183 321471805 2.820000e-97 366.0
20 TraesCS5D01G182300 chr5B 92.218 257 12 3 1719 1975 321474256 321474008 1.700000e-94 357.0
21 TraesCS5D01G182300 chr5B 98.225 169 3 0 3735 3903 321470487 321470319 3.750000e-76 296.0
22 TraesCS5D01G182300 chr5B 95.968 124 5 0 3544 3667 249075194 249075071 8.420000e-48 202.0
23 TraesCS5D01G182300 chr5B 91.429 140 10 2 4724 4861 321529680 321529541 1.820000e-44 191.0
24 TraesCS5D01G182300 chr5B 94.068 118 5 2 2265 2380 321473998 321473881 1.420000e-40 178.0
25 TraesCS5D01G182300 chr5B 100.000 42 0 0 3525 3566 321467694 321467653 1.480000e-10 78.7
26 TraesCS5D01G182300 chr5B 97.436 39 1 0 2369 2407 321472221 321472183 3.200000e-07 67.6
27 TraesCS5D01G182300 chr1A 93.878 49 2 1 285 332 486960395 486960443 6.890000e-09 73.1
28 TraesCS5D01G182300 chr7A 100.000 28 0 0 4933 4960 638852872 638852845 9.000000e-03 52.8
29 TraesCS5D01G182300 chr6D 100.000 28 0 0 4933 4960 27429200 27429173 9.000000e-03 52.8
30 TraesCS5D01G182300 chr4D 100.000 28 0 0 4933 4960 138434905 138434932 9.000000e-03 52.8
31 TraesCS5D01G182300 chr1B 100.000 28 0 0 4933 4960 410761154 410761127 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G182300 chr5D 283340751 283345710 4959 True 9160.0000 9160 100.00000 1 4960 1 chr5D.!!$R1 4959
1 TraesCS5D01G182300 chr5D 283107197 283108212 1015 True 310.5000 484 91.80975 2640 4833 4 chr5D.!!$R2 2193
2 TraesCS5D01G182300 chr5A 375549182 375553464 4282 True 1426.7500 3051 92.41050 53 4408 4 chr5A.!!$R2 4355
3 TraesCS5D01G182300 chr5B 321529541 321533865 4324 True 1465.5000 2263 92.37300 655 4861 4 chr5B.!!$R3 4206
4 TraesCS5D01G182300 chr5B 321467653 321474256 6603 True 387.6625 1347 95.17875 1719 3903 8 chr5B.!!$R2 2184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.108138 CCTTCTCATCACCGACCCAC 60.108 60.0 0.00 0.0 0.00 4.61 F
359 360 0.111061 TGTCTCAATGGCAAGTGGCT 59.889 50.0 6.41 0.0 44.01 4.75 F
386 387 0.176680 CACCCGTCATTCTCAGGGAG 59.823 60.0 6.36 0.0 46.64 4.30 F
2145 2173 0.179234 TGTGTGTGCTTCGAGGGAAA 59.821 50.0 0.00 0.0 0.00 3.13 F
2966 4943 0.608640 ATGACTGTCGGTGGGAACTC 59.391 55.0 2.98 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1581 1.309006 CCCCACTCCCGTACCTACT 59.691 63.158 0.0 0.0 0.00 2.57 R
2184 2422 0.178981 ACCAGCAAACATGGACAGCT 60.179 50.000 0.0 0.0 40.51 4.24 R
2324 2564 0.316204 CCAACCAGCAGGCAGAAAAG 59.684 55.000 0.0 0.0 39.06 2.27 R
2974 4951 0.673985 TGCTGCGTCTTCTGTACTGT 59.326 50.000 0.0 0.0 0.00 3.55 R
4464 7597 1.028130 TTCAGTGTTCGCAAATGCCA 58.972 45.000 0.0 0.0 37.91 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.764131 AGCTTATGTACTACTTCTCGATGC 58.236 41.667 0.00 0.00 0.00 3.91
27 28 4.918583 GCTTATGTACTACTTCTCGATGCC 59.081 45.833 0.00 0.00 0.00 4.40
28 29 3.627732 ATGTACTACTTCTCGATGCCG 57.372 47.619 0.00 0.00 37.07 5.69
29 30 1.674441 TGTACTACTTCTCGATGCCGG 59.326 52.381 0.00 0.00 36.24 6.13
30 31 0.666913 TACTACTTCTCGATGCCGGC 59.333 55.000 22.73 22.73 36.24 6.13
31 32 1.658717 CTACTTCTCGATGCCGGCG 60.659 63.158 23.90 7.87 36.24 6.46
32 33 3.768185 TACTTCTCGATGCCGGCGC 62.768 63.158 23.90 15.76 36.24 6.53
33 34 4.880537 CTTCTCGATGCCGGCGCT 62.881 66.667 23.90 12.17 36.24 5.92
45 46 3.420943 GGCGCTGCCGATTGTTAT 58.579 55.556 7.64 0.00 39.62 1.89
46 47 1.009675 GGCGCTGCCGATTGTTATG 60.010 57.895 7.64 0.00 39.62 1.90
47 48 1.009675 GCGCTGCCGATTGTTATGG 60.010 57.895 0.00 0.00 36.29 2.74
48 49 1.436195 GCGCTGCCGATTGTTATGGA 61.436 55.000 0.00 0.00 36.29 3.41
49 50 0.304705 CGCTGCCGATTGTTATGGAC 59.695 55.000 0.00 0.00 36.29 4.02
50 51 0.304705 GCTGCCGATTGTTATGGACG 59.695 55.000 0.00 0.00 0.00 4.79
51 52 1.934589 CTGCCGATTGTTATGGACGA 58.065 50.000 0.00 0.00 0.00 4.20
62 63 2.303163 TATGGACGATTGGTTGACGG 57.697 50.000 0.00 0.00 0.00 4.79
70 71 2.280524 TGGTTGACGGCGAACCAG 60.281 61.111 24.19 0.00 46.40 4.00
73 74 2.664851 TTGACGGCGAACCAGCAG 60.665 61.111 16.62 0.00 39.27 4.24
107 108 1.522569 CCCTTCTCATCACCGACCC 59.477 63.158 0.00 0.00 0.00 4.46
109 110 0.108138 CCTTCTCATCACCGACCCAC 60.108 60.000 0.00 0.00 0.00 4.61
148 149 1.486310 TCGGGGAAGATGTTGATGGAG 59.514 52.381 0.00 0.00 0.00 3.86
149 150 1.685148 GGGGAAGATGTTGATGGAGC 58.315 55.000 0.00 0.00 0.00 4.70
151 152 1.213926 GGGAAGATGTTGATGGAGCCT 59.786 52.381 0.00 0.00 0.00 4.58
166 167 2.195567 GCCTTGCAGTTGCCTCACA 61.196 57.895 1.06 0.00 41.18 3.58
197 198 6.336842 ACCACTCTTGAAAATCATCAAAGG 57.663 37.500 0.00 0.00 38.75 3.11
207 208 4.851639 AATCATCAAAGGACTGGCTACT 57.148 40.909 0.00 0.00 0.00 2.57
231 232 8.032451 ACTTTTTGTGTGCAGTAGTGTTAAAAT 58.968 29.630 0.00 0.00 0.00 1.82
244 245 8.743714 AGTAGTGTTAAAATAGGTAGTAGCGTT 58.256 33.333 0.00 0.00 0.00 4.84
266 267 8.015658 GCGTTGTCTGAACTTTCTTATATGTTT 58.984 33.333 0.00 0.00 0.00 2.83
268 269 9.118236 GTTGTCTGAACTTTCTTATATGTTTGC 57.882 33.333 0.00 0.00 0.00 3.68
286 287 8.668510 ATGTTTGCTCATACTCATTTACTAGG 57.331 34.615 0.00 0.00 0.00 3.02
287 288 7.047891 TGTTTGCTCATACTCATTTACTAGGG 58.952 38.462 0.00 0.00 0.00 3.53
288 289 5.808366 TGCTCATACTCATTTACTAGGGG 57.192 43.478 0.00 0.00 0.00 4.79
289 290 4.593206 TGCTCATACTCATTTACTAGGGGG 59.407 45.833 0.00 0.00 0.00 5.40
290 291 4.593634 GCTCATACTCATTTACTAGGGGGT 59.406 45.833 0.00 0.00 0.00 4.95
291 292 5.071923 GCTCATACTCATTTACTAGGGGGTT 59.928 44.000 0.00 0.00 0.00 4.11
292 293 6.494666 TCATACTCATTTACTAGGGGGTTG 57.505 41.667 0.00 0.00 0.00 3.77
293 294 5.368523 TCATACTCATTTACTAGGGGGTTGG 59.631 44.000 0.00 0.00 0.00 3.77
294 295 3.810623 ACTCATTTACTAGGGGGTTGGA 58.189 45.455 0.00 0.00 0.00 3.53
295 296 4.380791 ACTCATTTACTAGGGGGTTGGAT 58.619 43.478 0.00 0.00 0.00 3.41
296 297 4.412528 ACTCATTTACTAGGGGGTTGGATC 59.587 45.833 0.00 0.00 0.00 3.36
297 298 4.641868 TCATTTACTAGGGGGTTGGATCT 58.358 43.478 0.00 0.00 0.00 2.75
298 299 5.043762 TCATTTACTAGGGGGTTGGATCTT 58.956 41.667 0.00 0.00 0.00 2.40
299 300 5.494706 TCATTTACTAGGGGGTTGGATCTTT 59.505 40.000 0.00 0.00 0.00 2.52
300 301 5.871324 TTTACTAGGGGGTTGGATCTTTT 57.129 39.130 0.00 0.00 0.00 2.27
301 302 3.739401 ACTAGGGGGTTGGATCTTTTG 57.261 47.619 0.00 0.00 0.00 2.44
302 303 2.291605 ACTAGGGGGTTGGATCTTTTGC 60.292 50.000 0.00 0.00 0.00 3.68
303 304 0.252239 AGGGGGTTGGATCTTTTGCC 60.252 55.000 0.00 0.00 0.00 4.52
304 305 1.264749 GGGGGTTGGATCTTTTGCCC 61.265 60.000 0.00 0.00 35.52 5.36
305 306 2.286826 GGGTTGGATCTTTTGCCCC 58.713 57.895 0.00 0.00 0.00 5.80
306 307 0.544120 GGGTTGGATCTTTTGCCCCA 60.544 55.000 0.00 0.00 0.00 4.96
307 308 0.608130 GGTTGGATCTTTTGCCCCAC 59.392 55.000 0.00 0.00 0.00 4.61
308 309 1.632589 GTTGGATCTTTTGCCCCACT 58.367 50.000 0.00 0.00 0.00 4.00
309 310 1.970640 GTTGGATCTTTTGCCCCACTT 59.029 47.619 0.00 0.00 0.00 3.16
310 311 2.368548 GTTGGATCTTTTGCCCCACTTT 59.631 45.455 0.00 0.00 0.00 2.66
311 312 3.534357 TGGATCTTTTGCCCCACTTTA 57.466 42.857 0.00 0.00 0.00 1.85
312 313 3.161866 TGGATCTTTTGCCCCACTTTAC 58.838 45.455 0.00 0.00 0.00 2.01
313 314 2.163613 GGATCTTTTGCCCCACTTTACG 59.836 50.000 0.00 0.00 0.00 3.18
314 315 2.351706 TCTTTTGCCCCACTTTACGT 57.648 45.000 0.00 0.00 0.00 3.57
315 316 1.950909 TCTTTTGCCCCACTTTACGTG 59.049 47.619 0.00 0.00 43.41 4.49
325 326 3.552604 CACTTTACGTGGGGTTTGATG 57.447 47.619 0.00 0.00 40.02 3.07
326 327 3.142951 CACTTTACGTGGGGTTTGATGA 58.857 45.455 0.00 0.00 40.02 2.92
327 328 3.756434 CACTTTACGTGGGGTTTGATGAT 59.244 43.478 0.00 0.00 40.02 2.45
328 329 4.217550 CACTTTACGTGGGGTTTGATGATT 59.782 41.667 0.00 0.00 40.02 2.57
329 330 4.830600 ACTTTACGTGGGGTTTGATGATTT 59.169 37.500 0.00 0.00 0.00 2.17
330 331 4.775058 TTACGTGGGGTTTGATGATTTG 57.225 40.909 0.00 0.00 0.00 2.32
331 332 1.272212 ACGTGGGGTTTGATGATTTGC 59.728 47.619 0.00 0.00 0.00 3.68
332 333 1.404047 CGTGGGGTTTGATGATTTGCC 60.404 52.381 0.00 0.00 0.00 4.52
333 334 1.066215 GTGGGGTTTGATGATTTGCCC 60.066 52.381 0.00 0.00 35.52 5.36
335 336 1.274712 GGGTTTGATGATTTGCCCCA 58.725 50.000 0.00 0.00 0.00 4.96
336 337 1.839354 GGGTTTGATGATTTGCCCCAT 59.161 47.619 0.00 0.00 0.00 4.00
337 338 3.037549 GGGTTTGATGATTTGCCCCATA 58.962 45.455 0.00 0.00 0.00 2.74
338 339 3.181466 GGGTTTGATGATTTGCCCCATAC 60.181 47.826 0.00 0.00 0.00 2.39
339 340 3.706086 GGTTTGATGATTTGCCCCATACT 59.294 43.478 0.00 0.00 0.00 2.12
340 341 4.162131 GGTTTGATGATTTGCCCCATACTT 59.838 41.667 0.00 0.00 0.00 2.24
341 342 5.111293 GTTTGATGATTTGCCCCATACTTG 58.889 41.667 0.00 0.00 0.00 3.16
342 343 3.979911 TGATGATTTGCCCCATACTTGT 58.020 40.909 0.00 0.00 0.00 3.16
343 344 3.953612 TGATGATTTGCCCCATACTTGTC 59.046 43.478 0.00 0.00 0.00 3.18
344 345 3.737559 TGATTTGCCCCATACTTGTCT 57.262 42.857 0.00 0.00 0.00 3.41
345 346 3.620488 TGATTTGCCCCATACTTGTCTC 58.380 45.455 0.00 0.00 0.00 3.36
346 347 3.010027 TGATTTGCCCCATACTTGTCTCA 59.990 43.478 0.00 0.00 0.00 3.27
347 348 3.517296 TTTGCCCCATACTTGTCTCAA 57.483 42.857 0.00 0.00 0.00 3.02
348 349 3.737559 TTGCCCCATACTTGTCTCAAT 57.262 42.857 0.00 0.00 0.00 2.57
349 350 3.003394 TGCCCCATACTTGTCTCAATG 57.997 47.619 0.00 0.00 0.00 2.82
350 351 2.301346 GCCCCATACTTGTCTCAATGG 58.699 52.381 0.00 0.00 38.90 3.16
351 352 2.301346 CCCCATACTTGTCTCAATGGC 58.699 52.381 0.00 0.00 38.04 4.40
352 353 2.357050 CCCCATACTTGTCTCAATGGCA 60.357 50.000 0.00 0.00 38.04 4.92
353 354 3.355378 CCCATACTTGTCTCAATGGCAA 58.645 45.455 0.00 0.00 38.04 4.52
358 359 0.961019 TTGTCTCAATGGCAAGTGGC 59.039 50.000 0.00 0.00 35.04 5.01
359 360 0.111061 TGTCTCAATGGCAAGTGGCT 59.889 50.000 6.41 0.00 44.01 4.75
360 361 0.807496 GTCTCAATGGCAAGTGGCTC 59.193 55.000 6.41 0.00 44.01 4.70
361 362 0.322816 TCTCAATGGCAAGTGGCTCC 60.323 55.000 6.41 0.00 44.01 4.70
362 363 1.651240 CTCAATGGCAAGTGGCTCCG 61.651 60.000 6.41 0.00 44.01 4.63
363 364 2.361610 AATGGCAAGTGGCTCCGG 60.362 61.111 6.41 0.00 44.01 5.14
379 380 3.728373 GGCCCCACCCGTCATTCT 61.728 66.667 0.00 0.00 0.00 2.40
380 381 2.124695 GCCCCACCCGTCATTCTC 60.125 66.667 0.00 0.00 0.00 2.87
381 382 2.966732 GCCCCACCCGTCATTCTCA 61.967 63.158 0.00 0.00 0.00 3.27
382 383 1.221840 CCCCACCCGTCATTCTCAG 59.778 63.158 0.00 0.00 0.00 3.35
383 384 1.221840 CCCACCCGTCATTCTCAGG 59.778 63.158 0.00 0.00 0.00 3.86
385 386 1.264749 CCACCCGTCATTCTCAGGGA 61.265 60.000 6.36 0.00 46.64 4.20
386 387 0.176680 CACCCGTCATTCTCAGGGAG 59.823 60.000 6.36 0.00 46.64 4.30
387 388 0.978146 ACCCGTCATTCTCAGGGAGG 60.978 60.000 6.36 0.00 46.64 4.30
388 389 0.978146 CCCGTCATTCTCAGGGAGGT 60.978 60.000 0.00 0.00 46.64 3.85
389 390 1.688311 CCCGTCATTCTCAGGGAGGTA 60.688 57.143 0.00 0.00 46.64 3.08
390 391 2.108168 CCGTCATTCTCAGGGAGGTAA 58.892 52.381 0.00 0.00 0.00 2.85
391 392 2.500098 CCGTCATTCTCAGGGAGGTAAA 59.500 50.000 0.00 0.00 0.00 2.01
392 393 3.134804 CCGTCATTCTCAGGGAGGTAAAT 59.865 47.826 0.00 0.00 0.00 1.40
393 394 4.122776 CGTCATTCTCAGGGAGGTAAATG 58.877 47.826 0.00 0.00 0.00 2.32
394 395 4.141937 CGTCATTCTCAGGGAGGTAAATGA 60.142 45.833 5.31 5.31 32.13 2.57
395 396 5.626809 CGTCATTCTCAGGGAGGTAAATGAA 60.627 44.000 9.19 0.00 34.53 2.57
396 397 5.586643 GTCATTCTCAGGGAGGTAAATGAAC 59.413 44.000 9.19 3.60 34.53 3.18
397 398 5.250543 TCATTCTCAGGGAGGTAAATGAACA 59.749 40.000 6.45 0.00 31.86 3.18
398 399 5.576563 TTCTCAGGGAGGTAAATGAACAA 57.423 39.130 0.00 0.00 0.00 2.83
399 400 5.576563 TCTCAGGGAGGTAAATGAACAAA 57.423 39.130 0.00 0.00 0.00 2.83
400 401 5.560724 TCTCAGGGAGGTAAATGAACAAAG 58.439 41.667 0.00 0.00 0.00 2.77
401 402 5.073144 TCTCAGGGAGGTAAATGAACAAAGT 59.927 40.000 0.00 0.00 0.00 2.66
402 403 5.701224 TCAGGGAGGTAAATGAACAAAGTT 58.299 37.500 0.00 0.00 0.00 2.66
403 404 6.843752 TCAGGGAGGTAAATGAACAAAGTTA 58.156 36.000 0.00 0.00 0.00 2.24
404 405 6.940298 TCAGGGAGGTAAATGAACAAAGTTAG 59.060 38.462 0.00 0.00 0.00 2.34
405 406 6.940298 CAGGGAGGTAAATGAACAAAGTTAGA 59.060 38.462 0.00 0.00 0.00 2.10
406 407 7.447238 CAGGGAGGTAAATGAACAAAGTTAGAA 59.553 37.037 0.00 0.00 0.00 2.10
407 408 7.665974 AGGGAGGTAAATGAACAAAGTTAGAAG 59.334 37.037 0.00 0.00 0.00 2.85
408 409 7.447545 GGGAGGTAAATGAACAAAGTTAGAAGT 59.552 37.037 0.00 0.00 0.00 3.01
409 410 9.498176 GGAGGTAAATGAACAAAGTTAGAAGTA 57.502 33.333 0.00 0.00 0.00 2.24
416 417 7.562454 TGAACAAAGTTAGAAGTAAAGTGGG 57.438 36.000 0.00 0.00 0.00 4.61
417 418 7.340256 TGAACAAAGTTAGAAGTAAAGTGGGA 58.660 34.615 0.00 0.00 0.00 4.37
418 419 7.281549 TGAACAAAGTTAGAAGTAAAGTGGGAC 59.718 37.037 0.00 0.00 0.00 4.46
419 420 6.655930 ACAAAGTTAGAAGTAAAGTGGGACA 58.344 36.000 0.00 0.00 0.00 4.02
420 421 7.114095 ACAAAGTTAGAAGTAAAGTGGGACAA 58.886 34.615 0.00 0.00 44.16 3.18
421 422 7.612633 ACAAAGTTAGAAGTAAAGTGGGACAAA 59.387 33.333 0.00 0.00 44.16 2.83
422 423 8.463607 CAAAGTTAGAAGTAAAGTGGGACAAAA 58.536 33.333 0.00 0.00 44.16 2.44
423 424 7.803279 AGTTAGAAGTAAAGTGGGACAAAAG 57.197 36.000 0.00 0.00 44.16 2.27
424 425 7.571025 AGTTAGAAGTAAAGTGGGACAAAAGA 58.429 34.615 0.00 0.00 44.16 2.52
425 426 8.218488 AGTTAGAAGTAAAGTGGGACAAAAGAT 58.782 33.333 0.00 0.00 44.16 2.40
426 427 8.847196 GTTAGAAGTAAAGTGGGACAAAAGATT 58.153 33.333 0.00 0.00 44.16 2.40
427 428 7.511959 AGAAGTAAAGTGGGACAAAAGATTC 57.488 36.000 0.00 0.00 44.16 2.52
428 429 7.060421 AGAAGTAAAGTGGGACAAAAGATTCA 58.940 34.615 0.00 0.00 44.16 2.57
429 430 7.559897 AGAAGTAAAGTGGGACAAAAGATTCAA 59.440 33.333 0.00 0.00 44.16 2.69
430 431 7.839680 AGTAAAGTGGGACAAAAGATTCAAT 57.160 32.000 0.00 0.00 44.16 2.57
431 432 8.250143 AGTAAAGTGGGACAAAAGATTCAATT 57.750 30.769 0.00 0.00 44.16 2.32
432 433 8.704668 AGTAAAGTGGGACAAAAGATTCAATTT 58.295 29.630 0.00 0.00 44.16 1.82
433 434 8.978539 GTAAAGTGGGACAAAAGATTCAATTTC 58.021 33.333 0.00 0.00 44.16 2.17
434 435 6.983906 AGTGGGACAAAAGATTCAATTTCT 57.016 33.333 0.00 0.00 44.16 2.52
435 436 6.986250 AGTGGGACAAAAGATTCAATTTCTC 58.014 36.000 0.00 0.00 44.16 2.87
436 437 6.015095 AGTGGGACAAAAGATTCAATTTCTCC 60.015 38.462 2.61 2.61 44.16 3.71
437 438 5.837979 TGGGACAAAAGATTCAATTTCTCCA 59.162 36.000 9.69 0.00 31.92 3.86
438 439 6.497954 TGGGACAAAAGATTCAATTTCTCCAT 59.502 34.615 9.69 0.00 31.92 3.41
439 440 7.016465 TGGGACAAAAGATTCAATTTCTCCATT 59.984 33.333 9.69 0.00 31.92 3.16
440 441 7.879677 GGGACAAAAGATTCAATTTCTCCATTT 59.120 33.333 9.69 0.00 0.00 2.32
441 442 9.927668 GGACAAAAGATTCAATTTCTCCATTTA 57.072 29.630 5.15 0.00 0.00 1.40
451 452 7.685481 TCAATTTCTCCATTTACTGTCAGGTA 58.315 34.615 4.53 0.00 0.00 3.08
460 461 3.282745 CTGTCAGGTAGCGGCGTGT 62.283 63.158 9.37 0.00 0.00 4.49
464 465 1.591594 CAGGTAGCGGCGTGTATGG 60.592 63.158 9.37 0.00 0.00 2.74
470 471 2.746803 GCGGCGTGTATGGGTGTTC 61.747 63.158 9.37 0.00 0.00 3.18
481 482 3.495434 ATGGGTGTTCGTTTAAGTGGA 57.505 42.857 0.00 0.00 0.00 4.02
495 496 4.582760 TGGATACACGACAACCGC 57.417 55.556 0.00 0.00 46.17 5.68
499 500 1.274596 GATACACGACAACCGCGAAT 58.725 50.000 8.23 0.00 43.32 3.34
507 508 4.031991 CACGACAACCGCGAATAAGATTTA 59.968 41.667 8.23 0.00 43.32 1.40
527 528 1.869132 ACTTTTAAGTGAACGGTCCGC 59.131 47.619 12.28 0.00 37.98 5.54
528 529 1.868498 CTTTTAAGTGAACGGTCCGCA 59.132 47.619 12.28 0.00 0.00 5.69
549 550 9.546428 TCCGCATAATCTCACATAATTATATGG 57.454 33.333 3.96 0.00 42.71 2.74
577 578 4.169696 CGTTATGCGGGAGGGCCA 62.170 66.667 6.18 0.00 36.85 5.36
578 579 2.516225 GTTATGCGGGAGGGCCAC 60.516 66.667 6.18 0.00 35.15 5.01
579 580 3.012119 TTATGCGGGAGGGCCACA 61.012 61.111 6.18 0.00 35.15 4.17
590 591 2.597510 GGCCACAGGTTGTCCCAC 60.598 66.667 0.00 0.00 34.66 4.61
593 594 1.455383 GCCACAGGTTGTCCCACTTG 61.455 60.000 0.00 0.00 34.66 3.16
594 595 1.455383 CCACAGGTTGTCCCACTTGC 61.455 60.000 0.00 0.00 34.66 4.01
600 601 0.675633 GTTGTCCCACTTGCAGCAAT 59.324 50.000 8.67 0.00 0.00 3.56
614 615 6.207417 ACTTGCAGCAATCATTATGTATACCC 59.793 38.462 8.67 0.00 0.00 3.69
622 623 5.394224 TCATTATGTATACCCGAATGCGA 57.606 39.130 0.00 0.63 40.82 5.10
628 629 2.383245 ATACCCGAATGCGAGGCAGG 62.383 60.000 0.00 0.00 43.65 4.85
696 698 8.250332 TCCAAACTACTGCCATTAAAAATCATC 58.750 33.333 0.00 0.00 0.00 2.92
749 751 0.927537 GGCAACCGCACAAAGTTTTC 59.072 50.000 0.00 0.00 41.24 2.29
751 753 2.223618 GGCAACCGCACAAAGTTTTCTA 60.224 45.455 0.00 0.00 41.24 2.10
754 756 4.506288 GCAACCGCACAAAGTTTTCTAAAT 59.494 37.500 0.00 0.00 38.36 1.40
755 757 5.688176 GCAACCGCACAAAGTTTTCTAAATA 59.312 36.000 0.00 0.00 38.36 1.40
756 758 6.345487 GCAACCGCACAAAGTTTTCTAAATAC 60.345 38.462 0.00 0.00 38.36 1.89
757 759 6.628919 ACCGCACAAAGTTTTCTAAATACT 57.371 33.333 0.00 0.00 0.00 2.12
831 833 4.910585 GCGGATAGCCACCACCGG 62.911 72.222 0.00 0.00 44.61 5.28
841 843 2.040544 CACCACCGGAGCATTCCAC 61.041 63.158 9.46 0.00 44.26 4.02
1127 1129 2.750888 GCGCGATTTGGTCCTGTCC 61.751 63.158 12.10 0.00 0.00 4.02
1194 1206 3.482147 TGCGGAACATGCATCTCAT 57.518 47.368 0.00 0.00 37.44 2.90
1292 1304 0.596600 GCTTGGCGCATGATTGGATG 60.597 55.000 10.83 0.00 38.92 3.51
1317 1329 6.072783 GCCATATAAGATCTTCCTGTTCAAGC 60.073 42.308 12.24 1.50 0.00 4.01
1342 1354 5.692115 TCACCTGATATCTTTGTTAGGCA 57.308 39.130 3.98 0.00 0.00 4.75
1343 1355 6.252599 TCACCTGATATCTTTGTTAGGCAT 57.747 37.500 3.98 0.00 0.00 4.40
1416 1432 4.404640 AGATATGGTTGATGAAGCCATGG 58.595 43.478 7.63 7.63 42.38 3.66
1513 1529 2.609459 GCGTATGTGCTAGCAAGTGATT 59.391 45.455 21.29 3.40 0.00 2.57
1530 1546 3.815401 GTGATTCTTACGGCCATTATGCT 59.185 43.478 2.24 0.00 0.00 3.79
1565 1581 4.085357 ACTCAATTGGACTTGTGTAGCA 57.915 40.909 5.42 0.00 32.67 3.49
1591 1607 0.326808 ACGGGAGTGGGGGCTTATTA 60.327 55.000 0.00 0.00 44.82 0.98
1594 1610 1.519498 GGAGTGGGGGCTTATTACCT 58.481 55.000 0.00 0.00 0.00 3.08
1595 1611 1.420514 GGAGTGGGGGCTTATTACCTC 59.579 57.143 0.00 0.00 0.00 3.85
1633 1649 2.681848 GCAGATCACAATCCTCACTTGG 59.318 50.000 0.00 0.00 31.78 3.61
1666 1682 5.134661 GCCTAGTTACCTGTAGACAGAGAT 58.865 45.833 11.31 0.00 46.59 2.75
1668 1684 6.358178 CCTAGTTACCTGTAGACAGAGATCA 58.642 44.000 11.31 0.00 46.59 2.92
1680 1696 2.369203 ACAGAGATCATGGAGCTGGATG 59.631 50.000 0.00 0.00 0.00 3.51
1736 1761 2.628657 GCATTCTCTATAGTCACGGGGT 59.371 50.000 0.00 0.00 0.00 4.95
1931 1956 4.471904 AATACTGAGAATGAGGTTCGCA 57.528 40.909 0.00 0.00 43.12 5.10
1938 1963 5.532557 TGAGAATGAGGTTCGCACTATATG 58.467 41.667 0.00 0.00 40.95 1.78
2145 2173 0.179234 TGTGTGTGCTTCGAGGGAAA 59.821 50.000 0.00 0.00 0.00 3.13
2146 2174 1.305201 GTGTGTGCTTCGAGGGAAAA 58.695 50.000 0.00 0.00 0.00 2.29
2184 2422 0.692476 CTTGGGTCCATGGTGTCTCA 59.308 55.000 12.58 7.20 0.00 3.27
2199 2437 1.198637 GTCTCAGCTGTCCATGTTTGC 59.801 52.381 14.67 0.00 0.00 3.68
2262 2500 3.465403 CTCCCTGGGAGGCACGAG 61.465 72.222 31.49 8.14 45.43 4.18
2324 2564 3.790089 TCCCTCTTCTTTCCTTGTTCC 57.210 47.619 0.00 0.00 0.00 3.62
2487 4405 1.282382 ACGGGCACAGGTTACCTTAT 58.718 50.000 0.00 0.00 0.00 1.73
2493 4411 2.677037 GCACAGGTTACCTTATCGTGCT 60.677 50.000 26.91 0.00 42.64 4.40
2535 4453 4.834534 ACCGCACTAATAACCATGTTGTA 58.165 39.130 0.00 0.00 0.00 2.41
2619 4537 6.367374 TGTATGATCTCTTTGGTACCAACA 57.633 37.500 27.08 19.60 35.46 3.33
2653 4596 7.336679 CCAATTGATATGTGTGTTCTCCACTTA 59.663 37.037 7.12 0.00 44.81 2.24
2881 4858 9.956797 CTTGCCGAAGTTCATTTAATATTTTTG 57.043 29.630 3.32 0.00 0.00 2.44
2966 4943 0.608640 ATGACTGTCGGTGGGAACTC 59.391 55.000 2.98 0.00 0.00 3.01
2974 4951 0.604578 CGGTGGGAACTCGAAAGGTA 59.395 55.000 0.00 0.00 0.00 3.08
2980 4957 3.256631 TGGGAACTCGAAAGGTACAGTAC 59.743 47.826 1.59 1.59 0.00 2.73
3039 5016 7.093333 TGTGTATGAAGGATCACAGAGTGTATT 60.093 37.037 0.00 0.00 38.69 1.89
3040 5017 8.414003 GTGTATGAAGGATCACAGAGTGTATTA 58.586 37.037 0.00 0.00 38.69 0.98
3041 5018 8.977412 TGTATGAAGGATCACAGAGTGTATTAA 58.023 33.333 0.00 0.00 38.69 1.40
3042 5019 9.250624 GTATGAAGGATCACAGAGTGTATTAAC 57.749 37.037 0.00 0.00 38.69 2.01
3043 5020 7.239763 TGAAGGATCACAGAGTGTATTAACA 57.760 36.000 0.00 0.00 34.79 2.41
3044 5021 7.676004 TGAAGGATCACAGAGTGTATTAACAA 58.324 34.615 0.00 0.00 37.36 2.83
3125 5108 4.822350 TCGTAGAGCTACTGTTGCATATCT 59.178 41.667 16.07 12.02 34.04 1.98
3126 5109 5.049336 TCGTAGAGCTACTGTTGCATATCTC 60.049 44.000 16.07 4.90 34.04 2.75
3142 5125 8.725405 TGCATATCTCGAGGTTAAATTTGTAA 57.275 30.769 13.56 0.00 0.00 2.41
3246 5274 4.584325 TCTTGGGAAAATGAACTGACCTTG 59.416 41.667 0.00 0.00 0.00 3.61
3254 5282 8.250332 GGAAAATGAACTGACCTTGCATATTTA 58.750 33.333 0.00 0.00 0.00 1.40
3547 5575 7.144661 TCAGCCGTTGCCATTTATATTATTTG 58.855 34.615 0.00 0.00 38.69 2.32
3709 5737 1.380112 GAGACTGGGGCGGTACTCT 60.380 63.158 0.00 0.00 0.00 3.24
3710 5738 1.380112 AGACTGGGGCGGTACTCTC 60.380 63.158 0.00 0.00 0.00 3.20
3711 5739 1.380112 GACTGGGGCGGTACTCTCT 60.380 63.158 0.00 0.00 0.00 3.10
3712 5740 1.380112 ACTGGGGCGGTACTCTCTC 60.380 63.158 0.00 0.00 0.00 3.20
3713 5741 1.076632 CTGGGGCGGTACTCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
3714 5742 1.076923 TGGGGCGGTACTCTCTCTC 60.077 63.158 0.00 0.00 0.00 3.20
3741 6191 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
3770 6220 7.148289 CCATGTCAATCCATGCATAGAAGATAC 60.148 40.741 0.00 0.00 40.72 2.24
4023 6473 3.648067 TCTATGTCACTCCCATGGGATTC 59.352 47.826 33.89 21.97 44.24 2.52
4100 6550 2.351244 TGTTCCTCGCGATCTGCCT 61.351 57.895 10.36 0.00 42.08 4.75
4187 6637 6.365520 AGGTCTGTAATTGAAGAAACAACCT 58.634 36.000 0.00 0.00 32.97 3.50
4224 6750 8.800370 ATATAATATGTGTTTGTGTGTGTCCA 57.200 30.769 0.00 0.00 0.00 4.02
4225 6751 4.829064 ATATGTGTTTGTGTGTGTCCAC 57.171 40.909 0.00 0.00 42.19 4.02
4278 6804 0.179166 CGTGTGTTGCAGCAACTGTT 60.179 50.000 32.99 0.00 43.85 3.16
4340 6983 5.406780 CGCCTATAGGTTTCAGATGAACATC 59.593 44.000 20.10 6.68 37.57 3.06
4349 6995 6.320171 GTTTCAGATGAACATCACTCCATTG 58.680 40.000 15.63 5.02 40.22 2.82
4355 7001 7.120285 CAGATGAACATCACTCCATTGTTAGTT 59.880 37.037 15.63 0.00 40.22 2.24
4402 7534 2.293399 ACTGCAATCCCGTTTCTTGTTC 59.707 45.455 0.00 0.00 0.00 3.18
4408 7540 5.051039 GCAATCCCGTTTCTTGTTCTTTTTC 60.051 40.000 0.00 0.00 0.00 2.29
4412 7545 4.359706 CCGTTTCTTGTTCTTTTTCCTGG 58.640 43.478 0.00 0.00 0.00 4.45
4421 7554 4.257731 GTTCTTTTTCCTGGCACCAAAAA 58.742 39.130 9.89 9.89 0.00 1.94
4426 7559 2.079170 TCCTGGCACCAAAAATGTCA 57.921 45.000 0.00 0.00 0.00 3.58
4455 7588 4.170292 TCCACAGCTACGAGTAAACTTC 57.830 45.455 0.00 0.00 0.00 3.01
4460 7593 7.337689 TCCACAGCTACGAGTAAACTTCTATAA 59.662 37.037 0.00 0.00 0.00 0.98
4474 8158 8.801715 AAACTTCTATAAATATGGCATTTGCG 57.198 30.769 4.78 0.00 43.26 4.85
4485 8169 1.987770 GGCATTTGCGAACACTGAATG 59.012 47.619 0.00 0.00 43.26 2.67
4486 8170 2.351641 GGCATTTGCGAACACTGAATGA 60.352 45.455 0.00 0.00 43.26 2.57
4487 8171 3.504863 GCATTTGCGAACACTGAATGAT 58.495 40.909 0.00 0.00 31.15 2.45
4488 8172 3.922240 GCATTTGCGAACACTGAATGATT 59.078 39.130 0.00 0.00 31.15 2.57
4489 8173 4.030977 GCATTTGCGAACACTGAATGATTC 59.969 41.667 0.00 0.00 31.15 2.52
4491 8175 2.777094 TGCGAACACTGAATGATTCCA 58.223 42.857 2.26 0.00 0.00 3.53
4524 8228 9.666626 GTGTATTCCAGAGATGCGTATATATAC 57.333 37.037 12.18 12.18 0.00 1.47
4540 8244 8.583810 GTATATATACGTTCAGTTTTGCTCCA 57.416 34.615 7.12 0.00 0.00 3.86
4541 8245 9.204570 GTATATATACGTTCAGTTTTGCTCCAT 57.795 33.333 7.12 0.00 0.00 3.41
4543 8247 9.772973 ATATATACGTTCAGTTTTGCTCCATAA 57.227 29.630 0.00 0.00 0.00 1.90
4544 8248 4.749245 ACGTTCAGTTTTGCTCCATAAG 57.251 40.909 0.00 0.00 0.00 1.73
4545 8249 4.134563 ACGTTCAGTTTTGCTCCATAAGT 58.865 39.130 0.00 0.00 0.00 2.24
4546 8250 5.302360 ACGTTCAGTTTTGCTCCATAAGTA 58.698 37.500 0.00 0.00 0.00 2.24
4547 8251 5.938125 ACGTTCAGTTTTGCTCCATAAGTAT 59.062 36.000 0.00 0.00 0.00 2.12
4548 8252 6.430000 ACGTTCAGTTTTGCTCCATAAGTATT 59.570 34.615 0.00 0.00 0.00 1.89
4549 8253 6.742718 CGTTCAGTTTTGCTCCATAAGTATTG 59.257 38.462 0.00 0.00 0.00 1.90
4550 8254 7.573096 CGTTCAGTTTTGCTCCATAAGTATTGT 60.573 37.037 0.00 0.00 0.00 2.71
4552 8256 8.177119 TCAGTTTTGCTCCATAAGTATTGTTT 57.823 30.769 0.00 0.00 0.00 2.83
4553 8257 8.081633 TCAGTTTTGCTCCATAAGTATTGTTTG 58.918 33.333 0.00 0.00 0.00 2.93
4554 8258 7.329226 CAGTTTTGCTCCATAAGTATTGTTTGG 59.671 37.037 0.00 0.00 0.00 3.28
4557 8261 4.769488 TGCTCCATAAGTATTGTTTGGCAA 59.231 37.500 0.00 0.00 41.89 4.52
4558 8262 5.244851 TGCTCCATAAGTATTGTTTGGCAAA 59.755 36.000 8.93 8.93 40.91 3.68
4559 8263 6.162777 GCTCCATAAGTATTGTTTGGCAAAA 58.837 36.000 15.29 0.00 40.91 2.44
4587 8291 9.573166 AAAAGTGCCATAAGTATTGCTATATCA 57.427 29.630 0.00 0.00 0.00 2.15
4588 8292 9.745018 AAAGTGCCATAAGTATTGCTATATCAT 57.255 29.630 0.00 0.00 0.00 2.45
4589 8293 9.745018 AAGTGCCATAAGTATTGCTATATCATT 57.255 29.630 0.00 0.00 0.00 2.57
4617 8321 9.882996 ATTTTGCTATATCATTGATTGTACACG 57.117 29.630 4.14 0.00 0.00 4.49
4618 8322 8.655651 TTTGCTATATCATTGATTGTACACGA 57.344 30.769 4.14 0.00 0.00 4.35
4619 8323 8.655651 TTGCTATATCATTGATTGTACACGAA 57.344 30.769 4.14 0.00 0.00 3.85
4620 8324 8.298030 TGCTATATCATTGATTGTACACGAAG 57.702 34.615 4.14 0.00 0.00 3.79
4621 8325 8.141268 TGCTATATCATTGATTGTACACGAAGA 58.859 33.333 4.14 0.00 0.00 2.87
4622 8326 9.144747 GCTATATCATTGATTGTACACGAAGAT 57.855 33.333 4.14 0.00 0.00 2.40
4626 8330 6.314018 TCATTGATTGTACACGAAGATTTGC 58.686 36.000 0.00 0.00 0.00 3.68
4627 8331 4.320667 TGATTGTACACGAAGATTTGCG 57.679 40.909 0.00 0.00 0.00 4.85
4628 8332 3.743911 TGATTGTACACGAAGATTTGCGT 59.256 39.130 0.00 0.00 42.11 5.24
4632 8336 4.792087 ACGAAGATTTGCGTGGGT 57.208 50.000 0.00 0.00 39.56 4.51
4633 8337 3.919163 ACGAAGATTTGCGTGGGTA 57.081 47.368 0.00 0.00 39.56 3.69
4634 8338 2.396590 ACGAAGATTTGCGTGGGTAT 57.603 45.000 0.00 0.00 39.56 2.73
4635 8339 2.706890 ACGAAGATTTGCGTGGGTATT 58.293 42.857 0.00 0.00 39.56 1.89
4636 8340 3.078837 ACGAAGATTTGCGTGGGTATTT 58.921 40.909 0.00 0.00 39.56 1.40
4637 8341 3.504520 ACGAAGATTTGCGTGGGTATTTT 59.495 39.130 0.00 0.00 39.56 1.82
4638 8342 4.095610 CGAAGATTTGCGTGGGTATTTTC 58.904 43.478 0.00 0.00 0.00 2.29
4639 8343 4.142687 CGAAGATTTGCGTGGGTATTTTCT 60.143 41.667 0.00 0.00 0.00 2.52
4640 8344 5.619086 CGAAGATTTGCGTGGGTATTTTCTT 60.619 40.000 0.00 0.00 0.00 2.52
4641 8345 5.722021 AGATTTGCGTGGGTATTTTCTTT 57.278 34.783 0.00 0.00 0.00 2.52
4642 8346 6.096673 AGATTTGCGTGGGTATTTTCTTTT 57.903 33.333 0.00 0.00 0.00 2.27
4643 8347 6.156519 AGATTTGCGTGGGTATTTTCTTTTC 58.843 36.000 0.00 0.00 0.00 2.29
4644 8348 5.523438 TTTGCGTGGGTATTTTCTTTTCT 57.477 34.783 0.00 0.00 0.00 2.52
4645 8349 6.636562 TTTGCGTGGGTATTTTCTTTTCTA 57.363 33.333 0.00 0.00 0.00 2.10
4646 8350 6.827586 TTGCGTGGGTATTTTCTTTTCTAT 57.172 33.333 0.00 0.00 0.00 1.98
4647 8351 6.827586 TGCGTGGGTATTTTCTTTTCTATT 57.172 33.333 0.00 0.00 0.00 1.73
4648 8352 7.222000 TGCGTGGGTATTTTCTTTTCTATTT 57.778 32.000 0.00 0.00 0.00 1.40
4649 8353 7.662897 TGCGTGGGTATTTTCTTTTCTATTTT 58.337 30.769 0.00 0.00 0.00 1.82
4650 8354 8.145122 TGCGTGGGTATTTTCTTTTCTATTTTT 58.855 29.630 0.00 0.00 0.00 1.94
4651 8355 8.644619 GCGTGGGTATTTTCTTTTCTATTTTTC 58.355 33.333 0.00 0.00 0.00 2.29
4652 8356 9.908152 CGTGGGTATTTTCTTTTCTATTTTTCT 57.092 29.630 0.00 0.00 0.00 2.52
4674 8378 9.762933 TTTCTTTTTATGCTTGCTTAAATCACT 57.237 25.926 12.32 0.00 0.00 3.41
4675 8379 9.762933 TTCTTTTTATGCTTGCTTAAATCACTT 57.237 25.926 12.32 0.00 0.00 3.16
4681 8385 7.636150 ATGCTTGCTTAAATCACTTAGATGT 57.364 32.000 0.00 0.00 36.96 3.06
4682 8386 6.845302 TGCTTGCTTAAATCACTTAGATGTG 58.155 36.000 0.00 0.00 36.96 3.21
4683 8387 6.430925 TGCTTGCTTAAATCACTTAGATGTGT 59.569 34.615 0.00 0.00 36.96 3.72
4684 8388 7.606073 TGCTTGCTTAAATCACTTAGATGTGTA 59.394 33.333 0.00 0.00 36.96 2.90
4685 8389 8.450964 GCTTGCTTAAATCACTTAGATGTGTAA 58.549 33.333 0.00 0.00 36.96 2.41
4696 8400 9.946165 TCACTTAGATGTGTAATAACTATGACG 57.054 33.333 0.00 0.00 38.90 4.35
4697 8401 9.946165 CACTTAGATGTGTAATAACTATGACGA 57.054 33.333 0.00 0.00 33.61 4.20
4702 8406 8.851145 AGATGTGTAATAACTATGACGAGATGT 58.149 33.333 0.00 0.00 0.00 3.06
4703 8407 8.803201 ATGTGTAATAACTATGACGAGATGTG 57.197 34.615 0.00 0.00 0.00 3.21
4704 8408 6.695713 TGTGTAATAACTATGACGAGATGTGC 59.304 38.462 0.00 0.00 0.00 4.57
4705 8409 6.144080 GTGTAATAACTATGACGAGATGTGCC 59.856 42.308 0.00 0.00 0.00 5.01
4706 8410 2.604046 AACTATGACGAGATGTGCCC 57.396 50.000 0.00 0.00 0.00 5.36
4707 8411 1.781786 ACTATGACGAGATGTGCCCT 58.218 50.000 0.00 0.00 0.00 5.19
4708 8412 2.945456 ACTATGACGAGATGTGCCCTA 58.055 47.619 0.00 0.00 0.00 3.53
4709 8413 3.296854 ACTATGACGAGATGTGCCCTAA 58.703 45.455 0.00 0.00 0.00 2.69
4710 8414 3.704566 ACTATGACGAGATGTGCCCTAAA 59.295 43.478 0.00 0.00 0.00 1.85
4711 8415 2.380084 TGACGAGATGTGCCCTAAAC 57.620 50.000 0.00 0.00 0.00 2.01
4712 8416 1.621317 TGACGAGATGTGCCCTAAACA 59.379 47.619 0.00 0.00 0.00 2.83
4713 8417 2.000447 GACGAGATGTGCCCTAAACAC 59.000 52.381 0.00 0.00 38.55 3.32
4721 8425 4.093472 TGTGCCCTAAACACACATAAGT 57.907 40.909 0.00 0.00 42.88 2.24
4722 8426 4.465886 TGTGCCCTAAACACACATAAGTT 58.534 39.130 0.00 0.00 42.88 2.66
4771 8475 0.387565 CTAGAGCTCCGCTTTCCTCC 59.612 60.000 10.93 0.00 39.88 4.30
4891 8597 9.319143 CTCCCTTCATCCTATAATATAAAAGCG 57.681 37.037 0.00 0.00 0.00 4.68
4892 8598 8.822805 TCCCTTCATCCTATAATATAAAAGCGT 58.177 33.333 0.00 0.00 0.00 5.07
4893 8599 9.449719 CCCTTCATCCTATAATATAAAAGCGTT 57.550 33.333 0.00 0.00 0.00 4.84
4923 9530 9.823647 GACACTATTATATTATGTGATGGAGGG 57.176 37.037 0.00 0.00 33.41 4.30
4924 9531 9.560860 ACACTATTATATTATGTGATGGAGGGA 57.439 33.333 0.00 0.00 33.41 4.20
4931 9538 8.685257 ATATTATGTGATGGAGGGAGTATGAA 57.315 34.615 0.00 0.00 0.00 2.57
4932 9539 6.823286 TTATGTGATGGAGGGAGTATGAAA 57.177 37.500 0.00 0.00 0.00 2.69
4933 9540 5.715439 ATGTGATGGAGGGAGTATGAAAA 57.285 39.130 0.00 0.00 0.00 2.29
4934 9541 5.715439 TGTGATGGAGGGAGTATGAAAAT 57.285 39.130 0.00 0.00 0.00 1.82
4935 9542 6.078456 TGTGATGGAGGGAGTATGAAAATT 57.922 37.500 0.00 0.00 0.00 1.82
4936 9543 6.493166 TGTGATGGAGGGAGTATGAAAATTT 58.507 36.000 0.00 0.00 0.00 1.82
4937 9544 6.603201 TGTGATGGAGGGAGTATGAAAATTTC 59.397 38.462 0.00 0.00 0.00 2.17
4938 9545 6.603201 GTGATGGAGGGAGTATGAAAATTTCA 59.397 38.462 11.10 11.10 45.01 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.861372 GCATCGAGAAGTAGTACATAAGCTTTA 59.139 37.037 3.20 0.00 0.00 1.85
1 2 6.697892 GCATCGAGAAGTAGTACATAAGCTTT 59.302 38.462 3.20 0.00 0.00 3.51
2 3 6.210078 GCATCGAGAAGTAGTACATAAGCTT 58.790 40.000 3.48 3.48 0.00 3.74
3 4 5.278561 GGCATCGAGAAGTAGTACATAAGCT 60.279 44.000 2.52 0.00 0.00 3.74
4 5 4.918583 GGCATCGAGAAGTAGTACATAAGC 59.081 45.833 2.52 0.00 0.00 3.09
5 6 5.147865 CGGCATCGAGAAGTAGTACATAAG 58.852 45.833 2.52 0.00 39.00 1.73
6 7 4.023450 CCGGCATCGAGAAGTAGTACATAA 60.023 45.833 2.52 0.00 39.00 1.90
7 8 3.501062 CCGGCATCGAGAAGTAGTACATA 59.499 47.826 2.52 0.00 39.00 2.29
8 9 2.293677 CCGGCATCGAGAAGTAGTACAT 59.706 50.000 2.52 0.00 39.00 2.29
9 10 1.674441 CCGGCATCGAGAAGTAGTACA 59.326 52.381 2.52 0.00 39.00 2.90
10 11 1.599916 GCCGGCATCGAGAAGTAGTAC 60.600 57.143 24.80 0.00 39.00 2.73
11 12 0.666913 GCCGGCATCGAGAAGTAGTA 59.333 55.000 24.80 0.00 39.00 1.82
12 13 1.437986 GCCGGCATCGAGAAGTAGT 59.562 57.895 24.80 0.00 39.00 2.73
13 14 1.658717 CGCCGGCATCGAGAAGTAG 60.659 63.158 28.98 0.37 39.00 2.57
14 15 2.411701 CGCCGGCATCGAGAAGTA 59.588 61.111 28.98 0.00 39.00 2.24
16 17 4.880537 AGCGCCGGCATCGAGAAG 62.881 66.667 28.98 8.44 43.41 2.85
28 29 1.009675 CATAACAATCGGCAGCGCC 60.010 57.895 2.29 9.20 46.75 6.53
29 30 1.009675 CCATAACAATCGGCAGCGC 60.010 57.895 0.00 0.00 0.00 5.92
30 31 0.304705 GTCCATAACAATCGGCAGCG 59.695 55.000 0.00 0.00 0.00 5.18
31 32 0.304705 CGTCCATAACAATCGGCAGC 59.695 55.000 0.00 0.00 0.00 5.25
32 33 1.934589 TCGTCCATAACAATCGGCAG 58.065 50.000 0.00 0.00 0.00 4.85
33 34 2.611751 CAATCGTCCATAACAATCGGCA 59.388 45.455 0.00 0.00 0.00 5.69
34 35 2.032030 CCAATCGTCCATAACAATCGGC 60.032 50.000 0.00 0.00 0.00 5.54
35 36 3.202906 ACCAATCGTCCATAACAATCGG 58.797 45.455 0.00 0.00 0.00 4.18
36 37 4.331443 TCAACCAATCGTCCATAACAATCG 59.669 41.667 0.00 0.00 0.00 3.34
37 38 5.569413 GTCAACCAATCGTCCATAACAATC 58.431 41.667 0.00 0.00 0.00 2.67
38 39 4.094294 CGTCAACCAATCGTCCATAACAAT 59.906 41.667 0.00 0.00 0.00 2.71
39 40 3.433957 CGTCAACCAATCGTCCATAACAA 59.566 43.478 0.00 0.00 0.00 2.83
40 41 2.997303 CGTCAACCAATCGTCCATAACA 59.003 45.455 0.00 0.00 0.00 2.41
41 42 2.350498 CCGTCAACCAATCGTCCATAAC 59.650 50.000 0.00 0.00 0.00 1.89
42 43 2.623535 CCGTCAACCAATCGTCCATAA 58.376 47.619 0.00 0.00 0.00 1.90
43 44 1.741055 GCCGTCAACCAATCGTCCATA 60.741 52.381 0.00 0.00 0.00 2.74
44 45 1.024579 GCCGTCAACCAATCGTCCAT 61.025 55.000 0.00 0.00 0.00 3.41
45 46 1.669760 GCCGTCAACCAATCGTCCA 60.670 57.895 0.00 0.00 0.00 4.02
46 47 2.736682 CGCCGTCAACCAATCGTCC 61.737 63.158 0.00 0.00 0.00 4.79
47 48 1.286354 TTCGCCGTCAACCAATCGTC 61.286 55.000 0.00 0.00 0.00 4.20
48 49 1.301087 TTCGCCGTCAACCAATCGT 60.301 52.632 0.00 0.00 0.00 3.73
49 50 1.131826 GTTCGCCGTCAACCAATCG 59.868 57.895 0.00 0.00 0.00 3.34
50 51 1.500396 GGTTCGCCGTCAACCAATC 59.500 57.895 3.08 0.00 42.68 2.67
51 52 3.663202 GGTTCGCCGTCAACCAAT 58.337 55.556 3.08 0.00 42.68 3.16
83 84 1.092345 GGTGATGAGAAGGGCTTCGC 61.092 60.000 0.00 0.00 43.97 4.70
85 86 0.537188 TCGGTGATGAGAAGGGCTTC 59.463 55.000 0.00 0.00 39.78 3.86
127 128 1.209504 TCCATCAACATCTTCCCCGAC 59.790 52.381 0.00 0.00 0.00 4.79
132 133 2.686915 CAAGGCTCCATCAACATCTTCC 59.313 50.000 0.00 0.00 0.00 3.46
197 198 2.357637 TGCACACAAAAAGTAGCCAGTC 59.642 45.455 0.00 0.00 31.53 3.51
207 208 9.509855 CTATTTTAACACTACTGCACACAAAAA 57.490 29.630 0.00 0.00 0.00 1.94
231 232 4.330250 AGTTCAGACAACGCTACTACCTA 58.670 43.478 0.00 0.00 0.00 3.08
244 245 8.621532 AGCAAACATATAAGAAAGTTCAGACA 57.378 30.769 0.00 0.00 0.00 3.41
266 267 4.593206 CCCCCTAGTAAATGAGTATGAGCA 59.407 45.833 0.00 0.00 0.00 4.26
268 269 6.464465 CCAACCCCCTAGTAAATGAGTATGAG 60.464 46.154 0.00 0.00 0.00 2.90
284 285 0.252239 GGCAAAAGATCCAACCCCCT 60.252 55.000 0.00 0.00 0.00 4.79
285 286 1.264749 GGGCAAAAGATCCAACCCCC 61.265 60.000 0.00 0.00 0.00 5.40
286 287 2.286826 GGGCAAAAGATCCAACCCC 58.713 57.895 0.00 0.00 0.00 4.95
287 288 0.544120 TGGGGCAAAAGATCCAACCC 60.544 55.000 0.00 0.00 37.20 4.11
288 289 0.608130 GTGGGGCAAAAGATCCAACC 59.392 55.000 0.00 0.00 0.00 3.77
289 290 1.632589 AGTGGGGCAAAAGATCCAAC 58.367 50.000 0.00 0.00 0.00 3.77
290 291 2.397044 AAGTGGGGCAAAAGATCCAA 57.603 45.000 0.00 0.00 0.00 3.53
291 292 2.397044 AAAGTGGGGCAAAAGATCCA 57.603 45.000 0.00 0.00 0.00 3.41
292 293 2.163613 CGTAAAGTGGGGCAAAAGATCC 59.836 50.000 0.00 0.00 0.00 3.36
293 294 2.817844 ACGTAAAGTGGGGCAAAAGATC 59.182 45.455 0.00 0.00 0.00 2.75
294 295 2.556622 CACGTAAAGTGGGGCAAAAGAT 59.443 45.455 0.00 0.00 46.77 2.40
295 296 1.950909 CACGTAAAGTGGGGCAAAAGA 59.049 47.619 0.00 0.00 46.77 2.52
296 297 2.415697 CACGTAAAGTGGGGCAAAAG 57.584 50.000 0.00 0.00 46.77 2.27
306 307 3.495434 TCATCAAACCCCACGTAAAGT 57.505 42.857 0.00 0.00 0.00 2.66
307 308 5.160641 CAAATCATCAAACCCCACGTAAAG 58.839 41.667 0.00 0.00 0.00 1.85
308 309 4.559704 GCAAATCATCAAACCCCACGTAAA 60.560 41.667 0.00 0.00 0.00 2.01
309 310 3.057174 GCAAATCATCAAACCCCACGTAA 60.057 43.478 0.00 0.00 0.00 3.18
310 311 2.490115 GCAAATCATCAAACCCCACGTA 59.510 45.455 0.00 0.00 0.00 3.57
311 312 1.272212 GCAAATCATCAAACCCCACGT 59.728 47.619 0.00 0.00 0.00 4.49
312 313 1.404047 GGCAAATCATCAAACCCCACG 60.404 52.381 0.00 0.00 0.00 4.94
313 314 1.066215 GGGCAAATCATCAAACCCCAC 60.066 52.381 0.00 0.00 0.00 4.61
314 315 1.274712 GGGCAAATCATCAAACCCCA 58.725 50.000 0.00 0.00 0.00 4.96
316 317 1.274712 TGGGGCAAATCATCAAACCC 58.725 50.000 0.00 0.00 37.20 4.11
317 318 3.706086 AGTATGGGGCAAATCATCAAACC 59.294 43.478 0.00 0.00 0.00 3.27
318 319 5.111293 CAAGTATGGGGCAAATCATCAAAC 58.889 41.667 0.00 0.00 0.00 2.93
319 320 4.776837 ACAAGTATGGGGCAAATCATCAAA 59.223 37.500 0.00 0.00 0.00 2.69
320 321 4.352009 ACAAGTATGGGGCAAATCATCAA 58.648 39.130 0.00 0.00 0.00 2.57
321 322 3.953612 GACAAGTATGGGGCAAATCATCA 59.046 43.478 0.00 0.00 0.00 3.07
322 323 4.210331 AGACAAGTATGGGGCAAATCATC 58.790 43.478 0.00 0.00 0.00 2.92
323 324 4.210331 GAGACAAGTATGGGGCAAATCAT 58.790 43.478 0.00 0.00 0.00 2.45
324 325 3.010027 TGAGACAAGTATGGGGCAAATCA 59.990 43.478 0.00 0.00 0.00 2.57
325 326 3.620488 TGAGACAAGTATGGGGCAAATC 58.380 45.455 0.00 0.00 0.00 2.17
326 327 3.737559 TGAGACAAGTATGGGGCAAAT 57.262 42.857 0.00 0.00 0.00 2.32
327 328 3.517296 TTGAGACAAGTATGGGGCAAA 57.483 42.857 0.00 0.00 0.00 3.68
328 329 3.355378 CATTGAGACAAGTATGGGGCAA 58.645 45.455 0.00 0.00 0.00 4.52
329 330 2.357050 CCATTGAGACAAGTATGGGGCA 60.357 50.000 0.00 0.00 35.08 5.36
330 331 2.301346 CCATTGAGACAAGTATGGGGC 58.699 52.381 0.00 0.00 35.08 5.80
331 332 2.301346 GCCATTGAGACAAGTATGGGG 58.699 52.381 0.00 0.00 38.36 4.96
332 333 3.003394 TGCCATTGAGACAAGTATGGG 57.997 47.619 0.00 0.00 38.36 4.00
333 334 4.627611 CTTGCCATTGAGACAAGTATGG 57.372 45.455 0.00 0.00 40.39 2.74
338 339 1.068055 GCCACTTGCCATTGAGACAAG 60.068 52.381 10.57 10.57 44.98 3.16
339 340 0.961019 GCCACTTGCCATTGAGACAA 59.039 50.000 0.00 0.00 0.00 3.18
340 341 0.111061 AGCCACTTGCCATTGAGACA 59.889 50.000 0.00 0.00 42.71 3.41
341 342 0.807496 GAGCCACTTGCCATTGAGAC 59.193 55.000 0.00 0.00 42.71 3.36
342 343 0.322816 GGAGCCACTTGCCATTGAGA 60.323 55.000 0.00 0.00 42.71 3.27
343 344 1.651240 CGGAGCCACTTGCCATTGAG 61.651 60.000 0.00 0.00 42.71 3.02
344 345 1.675310 CGGAGCCACTTGCCATTGA 60.675 57.895 0.00 0.00 42.71 2.57
345 346 2.703798 CCGGAGCCACTTGCCATTG 61.704 63.158 0.00 0.00 42.71 2.82
346 347 2.361610 CCGGAGCCACTTGCCATT 60.362 61.111 0.00 0.00 42.71 3.16
362 363 3.699134 GAGAATGACGGGTGGGGCC 62.699 68.421 0.00 0.00 0.00 5.80
363 364 2.124695 GAGAATGACGGGTGGGGC 60.125 66.667 0.00 0.00 0.00 5.80
364 365 1.221840 CTGAGAATGACGGGTGGGG 59.778 63.158 0.00 0.00 0.00 4.96
365 366 1.221840 CCTGAGAATGACGGGTGGG 59.778 63.158 0.00 0.00 0.00 4.61
366 367 1.221840 CCCTGAGAATGACGGGTGG 59.778 63.158 0.00 0.00 31.89 4.61
367 368 0.176680 CTCCCTGAGAATGACGGGTG 59.823 60.000 0.00 0.00 37.92 4.61
368 369 0.978146 CCTCCCTGAGAATGACGGGT 60.978 60.000 0.00 0.00 37.92 5.28
369 370 0.978146 ACCTCCCTGAGAATGACGGG 60.978 60.000 0.00 0.00 38.07 5.28
370 371 1.776662 TACCTCCCTGAGAATGACGG 58.223 55.000 0.00 0.00 0.00 4.79
371 372 3.887621 TTTACCTCCCTGAGAATGACG 57.112 47.619 0.00 0.00 0.00 4.35
372 373 5.359194 TCATTTACCTCCCTGAGAATGAC 57.641 43.478 3.79 0.00 30.71 3.06
373 374 5.250543 TGTTCATTTACCTCCCTGAGAATGA 59.749 40.000 3.79 3.79 32.46 2.57
374 375 5.500234 TGTTCATTTACCTCCCTGAGAATG 58.500 41.667 0.00 0.00 0.00 2.67
375 376 5.779241 TGTTCATTTACCTCCCTGAGAAT 57.221 39.130 0.00 0.00 0.00 2.40
376 377 5.576563 TTGTTCATTTACCTCCCTGAGAA 57.423 39.130 0.00 0.00 0.00 2.87
377 378 5.073144 ACTTTGTTCATTTACCTCCCTGAGA 59.927 40.000 0.00 0.00 0.00 3.27
378 379 5.316987 ACTTTGTTCATTTACCTCCCTGAG 58.683 41.667 0.00 0.00 0.00 3.35
379 380 5.319043 ACTTTGTTCATTTACCTCCCTGA 57.681 39.130 0.00 0.00 0.00 3.86
380 381 6.940298 TCTAACTTTGTTCATTTACCTCCCTG 59.060 38.462 0.00 0.00 0.00 4.45
381 382 7.086685 TCTAACTTTGTTCATTTACCTCCCT 57.913 36.000 0.00 0.00 0.00 4.20
382 383 7.447545 ACTTCTAACTTTGTTCATTTACCTCCC 59.552 37.037 0.00 0.00 0.00 4.30
383 384 8.392372 ACTTCTAACTTTGTTCATTTACCTCC 57.608 34.615 0.00 0.00 0.00 4.30
390 391 8.630037 CCCACTTTACTTCTAACTTTGTTCATT 58.370 33.333 0.00 0.00 0.00 2.57
391 392 7.996644 TCCCACTTTACTTCTAACTTTGTTCAT 59.003 33.333 0.00 0.00 0.00 2.57
392 393 7.281549 GTCCCACTTTACTTCTAACTTTGTTCA 59.718 37.037 0.00 0.00 0.00 3.18
393 394 7.281549 TGTCCCACTTTACTTCTAACTTTGTTC 59.718 37.037 0.00 0.00 0.00 3.18
394 395 7.114095 TGTCCCACTTTACTTCTAACTTTGTT 58.886 34.615 0.00 0.00 0.00 2.83
395 396 6.655930 TGTCCCACTTTACTTCTAACTTTGT 58.344 36.000 0.00 0.00 0.00 2.83
396 397 7.562454 TTGTCCCACTTTACTTCTAACTTTG 57.438 36.000 0.00 0.00 0.00 2.77
397 398 8.584063 TTTTGTCCCACTTTACTTCTAACTTT 57.416 30.769 0.00 0.00 0.00 2.66
398 399 8.050930 TCTTTTGTCCCACTTTACTTCTAACTT 58.949 33.333 0.00 0.00 0.00 2.66
399 400 7.571025 TCTTTTGTCCCACTTTACTTCTAACT 58.429 34.615 0.00 0.00 0.00 2.24
400 401 7.797038 TCTTTTGTCCCACTTTACTTCTAAC 57.203 36.000 0.00 0.00 0.00 2.34
401 402 8.990163 AATCTTTTGTCCCACTTTACTTCTAA 57.010 30.769 0.00 0.00 0.00 2.10
402 403 8.215050 TGAATCTTTTGTCCCACTTTACTTCTA 58.785 33.333 0.00 0.00 0.00 2.10
403 404 7.060421 TGAATCTTTTGTCCCACTTTACTTCT 58.940 34.615 0.00 0.00 0.00 2.85
404 405 7.272037 TGAATCTTTTGTCCCACTTTACTTC 57.728 36.000 0.00 0.00 0.00 3.01
405 406 7.654022 TTGAATCTTTTGTCCCACTTTACTT 57.346 32.000 0.00 0.00 0.00 2.24
406 407 7.839680 ATTGAATCTTTTGTCCCACTTTACT 57.160 32.000 0.00 0.00 0.00 2.24
407 408 8.887036 AAATTGAATCTTTTGTCCCACTTTAC 57.113 30.769 0.00 0.00 0.00 2.01
408 409 8.923270 AGAAATTGAATCTTTTGTCCCACTTTA 58.077 29.630 0.00 0.00 0.00 1.85
409 410 7.795047 AGAAATTGAATCTTTTGTCCCACTTT 58.205 30.769 0.00 0.00 0.00 2.66
410 411 7.365497 AGAAATTGAATCTTTTGTCCCACTT 57.635 32.000 0.00 0.00 0.00 3.16
411 412 6.015095 GGAGAAATTGAATCTTTTGTCCCACT 60.015 38.462 11.54 0.00 38.62 4.00
412 413 6.159293 GGAGAAATTGAATCTTTTGTCCCAC 58.841 40.000 11.54 0.00 38.62 4.61
413 414 5.837979 TGGAGAAATTGAATCTTTTGTCCCA 59.162 36.000 16.53 7.56 41.95 4.37
414 415 6.345096 TGGAGAAATTGAATCTTTTGTCCC 57.655 37.500 16.53 5.91 41.95 4.46
415 416 8.837788 AAATGGAGAAATTGAATCTTTTGTCC 57.162 30.769 14.09 14.09 42.58 4.02
421 422 9.300681 TGACAGTAAATGGAGAAATTGAATCTT 57.699 29.630 0.00 0.00 0.00 2.40
422 423 8.868522 TGACAGTAAATGGAGAAATTGAATCT 57.131 30.769 0.00 0.00 0.00 2.40
423 424 8.186821 CCTGACAGTAAATGGAGAAATTGAATC 58.813 37.037 0.93 0.00 0.00 2.52
424 425 7.671398 ACCTGACAGTAAATGGAGAAATTGAAT 59.329 33.333 0.93 0.00 0.00 2.57
425 426 7.004086 ACCTGACAGTAAATGGAGAAATTGAA 58.996 34.615 0.93 0.00 0.00 2.69
426 427 6.542821 ACCTGACAGTAAATGGAGAAATTGA 58.457 36.000 0.93 0.00 0.00 2.57
427 428 6.824305 ACCTGACAGTAAATGGAGAAATTG 57.176 37.500 0.93 0.00 0.00 2.32
428 429 6.599638 GCTACCTGACAGTAAATGGAGAAATT 59.400 38.462 0.93 0.00 0.00 1.82
429 430 6.116126 GCTACCTGACAGTAAATGGAGAAAT 58.884 40.000 0.93 0.00 0.00 2.17
430 431 5.488341 GCTACCTGACAGTAAATGGAGAAA 58.512 41.667 0.93 0.00 0.00 2.52
431 432 4.381612 CGCTACCTGACAGTAAATGGAGAA 60.382 45.833 0.93 0.00 0.00 2.87
432 433 3.130516 CGCTACCTGACAGTAAATGGAGA 59.869 47.826 0.93 0.00 0.00 3.71
433 434 3.448686 CGCTACCTGACAGTAAATGGAG 58.551 50.000 0.93 0.00 0.00 3.86
434 435 2.167693 CCGCTACCTGACAGTAAATGGA 59.832 50.000 0.93 0.00 0.00 3.41
435 436 2.550978 CCGCTACCTGACAGTAAATGG 58.449 52.381 0.93 0.00 0.00 3.16
436 437 1.933853 GCCGCTACCTGACAGTAAATG 59.066 52.381 0.93 0.00 0.00 2.32
437 438 1.470979 CGCCGCTACCTGACAGTAAAT 60.471 52.381 0.93 0.00 0.00 1.40
438 439 0.108992 CGCCGCTACCTGACAGTAAA 60.109 55.000 0.93 0.00 0.00 2.01
439 440 1.246056 ACGCCGCTACCTGACAGTAA 61.246 55.000 0.93 0.00 0.00 2.24
440 441 1.676635 ACGCCGCTACCTGACAGTA 60.677 57.895 0.93 0.00 0.00 2.74
441 442 2.989824 ACGCCGCTACCTGACAGT 60.990 61.111 0.93 0.00 0.00 3.55
442 443 1.929806 TACACGCCGCTACCTGACAG 61.930 60.000 0.00 0.00 0.00 3.51
443 444 1.317431 ATACACGCCGCTACCTGACA 61.317 55.000 0.00 0.00 0.00 3.58
451 452 3.248446 AACACCCATACACGCCGCT 62.248 57.895 0.00 0.00 0.00 5.52
460 461 4.620589 TCCACTTAAACGAACACCCATA 57.379 40.909 0.00 0.00 0.00 2.74
464 465 4.143263 CGTGTATCCACTTAAACGAACACC 60.143 45.833 0.00 0.00 39.55 4.16
470 471 4.143263 GGTTGTCGTGTATCCACTTAAACG 60.143 45.833 0.00 0.00 39.55 3.60
487 488 5.713822 AGTAAATCTTATTCGCGGTTGTC 57.286 39.130 6.13 0.00 0.00 3.18
489 490 8.883789 TTAAAAGTAAATCTTATTCGCGGTTG 57.116 30.769 6.13 0.00 35.02 3.77
499 500 8.992073 GGACCGTTCACTTAAAAGTAAATCTTA 58.008 33.333 0.00 0.00 37.08 2.10
507 508 1.869132 GCGGACCGTTCACTTAAAAGT 59.131 47.619 16.73 0.00 40.60 2.66
548 549 1.652124 CGCATAACGCCGTATATGTCC 59.348 52.381 15.61 5.07 37.30 4.02
549 550 1.652124 CCGCATAACGCCGTATATGTC 59.348 52.381 15.61 10.04 41.76 3.06
551 552 0.996462 CCCGCATAACGCCGTATATG 59.004 55.000 12.17 12.17 41.76 1.78
556 557 4.524318 CCTCCCGCATAACGCCGT 62.524 66.667 0.00 0.00 41.76 5.68
574 575 1.152756 AAGTGGGACAACCTGTGGC 60.153 57.895 0.00 0.00 44.16 5.01
577 578 0.466189 CTGCAAGTGGGACAACCTGT 60.466 55.000 0.00 0.00 44.16 4.00
578 579 1.799258 GCTGCAAGTGGGACAACCTG 61.799 60.000 0.00 0.00 44.16 4.00
579 580 1.529244 GCTGCAAGTGGGACAACCT 60.529 57.895 0.00 0.00 44.16 3.50
581 582 0.675633 ATTGCTGCAAGTGGGACAAC 59.324 50.000 20.72 0.00 44.16 3.32
582 583 0.961019 GATTGCTGCAAGTGGGACAA 59.039 50.000 20.72 0.00 44.16 3.18
590 591 6.615088 GGGTATACATAATGATTGCTGCAAG 58.385 40.000 20.72 7.54 0.00 4.01
593 594 4.935205 TCGGGTATACATAATGATTGCTGC 59.065 41.667 5.01 0.00 0.00 5.25
594 595 7.466805 CATTCGGGTATACATAATGATTGCTG 58.533 38.462 14.30 0.00 30.77 4.41
600 601 5.394224 TCGCATTCGGGTATACATAATGA 57.606 39.130 19.90 3.93 36.13 2.57
614 615 2.169789 CACTCCTGCCTCGCATTCG 61.170 63.158 0.00 0.00 38.13 3.34
622 623 0.324943 ACGCAATTACACTCCTGCCT 59.675 50.000 0.00 0.00 0.00 4.75
628 629 4.146443 GCTTTTGTTGACGCAATTACACTC 59.854 41.667 0.00 0.00 0.00 3.51
666 668 8.466617 TTTTTAATGGCAGTAGTTTGGACTTA 57.533 30.769 0.00 0.00 37.33 2.24
696 698 4.319177 AGACCTTTTCTCAAGATTCACCG 58.681 43.478 0.00 0.00 0.00 4.94
754 756 9.182214 AGAGACGTGACATTAATTAGGTAAGTA 57.818 33.333 0.00 0.00 0.00 2.24
755 757 8.064336 AGAGACGTGACATTAATTAGGTAAGT 57.936 34.615 0.00 0.00 0.00 2.24
756 758 7.376336 CGAGAGACGTGACATTAATTAGGTAAG 59.624 40.741 0.00 0.00 37.22 2.34
757 759 7.191551 CGAGAGACGTGACATTAATTAGGTAA 58.808 38.462 0.00 0.00 37.22 2.85
778 780 1.381327 GGGGATCAGGTGGACGAGA 60.381 63.158 0.00 0.00 0.00 4.04
1194 1206 1.838112 AATTCCTCGCATGCCTTTCA 58.162 45.000 13.15 0.00 0.00 2.69
1292 1304 6.072783 GCTTGAACAGGAAGATCTTATATGGC 60.073 42.308 8.25 5.38 0.00 4.40
1317 1329 5.406780 GCCTAACAAAGATATCAGGTGATCG 59.593 44.000 5.32 0.00 36.05 3.69
1342 1354 3.055747 TGTGGCATGCAATCAATCACAAT 60.056 39.130 21.36 0.00 32.11 2.71
1343 1355 2.299297 TGTGGCATGCAATCAATCACAA 59.701 40.909 21.36 4.83 32.11 3.33
1416 1432 5.105716 ACACTACATCACAGTCACCTCATAC 60.106 44.000 0.00 0.00 0.00 2.39
1513 1529 1.488812 ACCAGCATAATGGCCGTAAGA 59.511 47.619 0.00 0.00 44.80 2.10
1530 1546 5.063204 CCAATTGAGTTGTGAGTAAGACCA 58.937 41.667 7.12 0.00 36.01 4.02
1565 1581 1.309006 CCCCACTCCCGTACCTACT 59.691 63.158 0.00 0.00 0.00 2.57
1591 1607 3.821033 GCTTACAATTGACCACTTGAGGT 59.179 43.478 13.59 0.00 46.82 3.85
1594 1610 4.713553 TCTGCTTACAATTGACCACTTGA 58.286 39.130 13.59 0.00 0.00 3.02
1595 1611 5.181811 TGATCTGCTTACAATTGACCACTTG 59.818 40.000 13.59 0.00 0.00 3.16
1666 1682 2.408271 GAACACATCCAGCTCCATGA 57.592 50.000 8.18 0.00 0.00 3.07
1703 1719 7.063593 ACTATAGAGAATGCCTGTAGTGAAGA 58.936 38.462 6.78 0.00 37.25 2.87
1931 1956 7.724506 TCTCCTTTCGGTAAGATGTCATATAGT 59.275 37.037 0.00 0.00 35.80 2.12
1938 1963 6.647067 CCATAATCTCCTTTCGGTAAGATGTC 59.353 42.308 0.00 0.00 35.80 3.06
2092 2120 5.171339 AGTAGCAGTCTTGATTTCACCAT 57.829 39.130 0.00 0.00 0.00 3.55
2103 2131 4.585162 ACTGAACACTGTAGTAGCAGTCTT 59.415 41.667 0.00 0.00 46.81 3.01
2145 2173 5.361857 CCAAGGCAGACATCATAGGAAAATT 59.638 40.000 0.00 0.00 0.00 1.82
2146 2174 4.891756 CCAAGGCAGACATCATAGGAAAAT 59.108 41.667 0.00 0.00 0.00 1.82
2184 2422 0.178981 ACCAGCAAACATGGACAGCT 60.179 50.000 0.00 0.00 40.51 4.24
2199 2437 0.806868 CATAACAGCACTGCCACCAG 59.193 55.000 0.00 0.00 44.80 4.00
2259 2497 1.140852 TCAGGCCCATTTATGTCCTCG 59.859 52.381 0.00 0.00 29.88 4.63
2262 2500 2.242043 CCATCAGGCCCATTTATGTCC 58.758 52.381 0.00 0.00 0.00 4.02
2324 2564 0.316204 CCAACCAGCAGGCAGAAAAG 59.684 55.000 0.00 0.00 39.06 2.27
2487 4405 0.817654 CCTCACCATCTACAGCACGA 59.182 55.000 0.00 0.00 0.00 4.35
2493 4411 0.324368 AGGCGACCTCACCATCTACA 60.324 55.000 0.00 0.00 0.00 2.74
2535 4453 4.119862 GAGGCATGACACATACAATACGT 58.880 43.478 0.00 0.00 0.00 3.57
2604 4522 5.222631 GCATTTTCTGTTGGTACCAAAGAG 58.777 41.667 28.67 24.46 37.70 2.85
2619 4537 6.938507 ACACACATATCAATTGGCATTTTCT 58.061 32.000 5.42 0.00 0.00 2.52
2653 4596 7.388437 TGGATTTTCTGCATGCTTTTAAAGAT 58.612 30.769 20.33 6.54 0.00 2.40
2894 4871 7.547370 CCATTGACAAAGTTCAGTTGGTAAAAA 59.453 33.333 0.00 0.00 31.00 1.94
2939 4916 0.320771 ACCGACAGTCATGCTTCCAC 60.321 55.000 0.41 0.00 0.00 4.02
2966 4943 4.156915 CGTCTTCTGTACTGTACCTTTCG 58.843 47.826 14.91 8.63 0.00 3.46
2974 4951 0.673985 TGCTGCGTCTTCTGTACTGT 59.326 50.000 0.00 0.00 0.00 3.55
2980 4957 0.886490 AAACCCTGCTGCGTCTTCTG 60.886 55.000 0.00 0.00 0.00 3.02
3039 5016 7.643569 AATCACAAGCATGATACCATTGTTA 57.356 32.000 0.00 0.00 38.40 2.41
3040 5017 6.534475 AATCACAAGCATGATACCATTGTT 57.466 33.333 0.00 0.00 38.40 2.83
3041 5018 7.643569 TTAATCACAAGCATGATACCATTGT 57.356 32.000 0.00 0.00 38.40 2.71
3044 5021 9.578576 AGTAATTAATCACAAGCATGATACCAT 57.421 29.630 0.00 0.00 38.40 3.55
3125 5108 5.540911 AGACGGTTACAAATTTAACCTCGA 58.459 37.500 17.00 0.00 46.24 4.04
3126 5109 5.851047 AGACGGTTACAAATTTAACCTCG 57.149 39.130 17.00 9.73 46.24 4.63
3163 5146 7.502226 TCCTTGAGCAGTAAAAATTCAGAGAAA 59.498 33.333 0.00 0.00 0.00 2.52
3164 5147 6.998074 TCCTTGAGCAGTAAAAATTCAGAGAA 59.002 34.615 0.00 0.00 0.00 2.87
3293 5321 2.463876 GAACTGCAAGCAGGTTGAAAC 58.536 47.619 24.29 3.65 45.07 2.78
3709 5737 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3710 5738 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3711 5739 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3712 5740 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3713 5741 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3714 5742 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3741 6191 2.061509 TGCATGGATTGACATGGAGG 57.938 50.000 8.11 0.00 46.40 4.30
3770 6220 1.654137 GCCACACGTCAACAAAGCG 60.654 57.895 0.00 0.00 0.00 4.68
4023 6473 2.216488 CAGACGCCGAATCTACATTTCG 59.784 50.000 0.00 0.00 44.17 3.46
4100 6550 2.503765 TCCATCTCCTTAACGGCAATCA 59.496 45.455 0.00 0.00 0.00 2.57
4231 6757 9.541143 ACTTTGAAAGAAAGAAACAAGAAAACA 57.459 25.926 12.53 0.00 0.00 2.83
4232 6758 9.797473 CACTTTGAAAGAAAGAAACAAGAAAAC 57.203 29.630 12.53 0.00 0.00 2.43
4233 6759 8.495148 GCACTTTGAAAGAAAGAAACAAGAAAA 58.505 29.630 12.53 0.00 0.00 2.29
4278 6804 3.994392 GTGCGAGACCATCAAAGAGTAAA 59.006 43.478 0.00 0.00 0.00 2.01
4340 6983 6.722301 CATATGCTCAACTAACAATGGAGTG 58.278 40.000 0.00 0.00 0.00 3.51
4402 7534 4.198530 ACATTTTTGGTGCCAGGAAAAAG 58.801 39.130 0.00 4.25 33.36 2.27
4408 7540 1.411977 TGTGACATTTTTGGTGCCAGG 59.588 47.619 0.00 0.00 0.00 4.45
4412 7545 3.380142 ACGATTGTGACATTTTTGGTGC 58.620 40.909 0.00 0.00 0.00 5.01
4421 7554 1.806542 GCTGTGGAACGATTGTGACAT 59.193 47.619 0.00 0.00 42.39 3.06
4426 7559 1.271379 TCGTAGCTGTGGAACGATTGT 59.729 47.619 4.60 0.00 42.39 2.71
4455 7588 7.324375 CAGTGTTCGCAAATGCCATATTTATAG 59.676 37.037 0.00 0.00 37.91 1.31
4460 7593 3.443329 TCAGTGTTCGCAAATGCCATATT 59.557 39.130 0.00 0.00 37.91 1.28
4464 7597 1.028130 TTCAGTGTTCGCAAATGCCA 58.972 45.000 0.00 0.00 37.91 4.92
4474 8158 4.524328 AGGGTTTGGAATCATTCAGTGTTC 59.476 41.667 0.00 0.00 0.00 3.18
4485 8169 4.340617 TGGAATACACAGGGTTTGGAATC 58.659 43.478 0.00 0.00 0.00 2.52
4486 8170 4.044065 TCTGGAATACACAGGGTTTGGAAT 59.956 41.667 0.00 0.00 36.62 3.01
4487 8171 3.396276 TCTGGAATACACAGGGTTTGGAA 59.604 43.478 0.00 0.00 36.62 3.53
4488 8172 2.983192 TCTGGAATACACAGGGTTTGGA 59.017 45.455 0.00 0.00 36.62 3.53
4489 8173 3.009033 TCTCTGGAATACACAGGGTTTGG 59.991 47.826 0.00 0.00 37.68 3.28
4491 8175 4.848357 CATCTCTGGAATACACAGGGTTT 58.152 43.478 0.00 0.00 37.68 3.27
4524 8228 4.749245 ACTTATGGAGCAAAACTGAACG 57.251 40.909 0.00 0.00 0.00 3.95
4529 8233 7.378181 CCAAACAATACTTATGGAGCAAAACT 58.622 34.615 0.00 0.00 32.82 2.66
4530 8234 6.090763 GCCAAACAATACTTATGGAGCAAAAC 59.909 38.462 0.00 0.00 32.82 2.43
4531 8235 6.162777 GCCAAACAATACTTATGGAGCAAAA 58.837 36.000 0.00 0.00 32.82 2.44
4532 8236 5.244851 TGCCAAACAATACTTATGGAGCAAA 59.755 36.000 0.00 0.00 32.82 3.68
4534 8238 4.339748 TGCCAAACAATACTTATGGAGCA 58.660 39.130 0.00 0.00 32.82 4.26
4535 8239 4.981806 TGCCAAACAATACTTATGGAGC 57.018 40.909 0.00 0.00 32.82 4.70
4561 8265 9.573166 TGATATAGCAATACTTATGGCACTTTT 57.427 29.630 0.00 0.00 35.03 2.27
4562 8266 9.745018 ATGATATAGCAATACTTATGGCACTTT 57.255 29.630 0.00 0.00 35.03 2.66
4563 8267 9.745018 AATGATATAGCAATACTTATGGCACTT 57.255 29.630 0.00 0.00 35.03 3.16
4591 8295 9.882996 CGTGTACAATCAATGATATAGCAAAAT 57.117 29.630 0.00 0.00 0.00 1.82
4592 8296 9.103861 TCGTGTACAATCAATGATATAGCAAAA 57.896 29.630 0.00 0.00 0.00 2.44
4593 8297 8.655651 TCGTGTACAATCAATGATATAGCAAA 57.344 30.769 0.00 0.00 0.00 3.68
4594 8298 8.655651 TTCGTGTACAATCAATGATATAGCAA 57.344 30.769 0.00 0.00 0.00 3.91
4595 8299 8.141268 TCTTCGTGTACAATCAATGATATAGCA 58.859 33.333 0.00 0.00 0.00 3.49
4596 8300 8.520835 TCTTCGTGTACAATCAATGATATAGC 57.479 34.615 0.00 0.00 0.00 2.97
4600 8304 8.122330 GCAAATCTTCGTGTACAATCAATGATA 58.878 33.333 0.00 0.00 0.00 2.15
4601 8305 6.968904 GCAAATCTTCGTGTACAATCAATGAT 59.031 34.615 0.00 0.00 0.00 2.45
4602 8306 6.314018 GCAAATCTTCGTGTACAATCAATGA 58.686 36.000 0.00 0.00 0.00 2.57
4603 8307 5.225743 CGCAAATCTTCGTGTACAATCAATG 59.774 40.000 0.00 0.00 0.00 2.82
4604 8308 5.106712 ACGCAAATCTTCGTGTACAATCAAT 60.107 36.000 0.00 0.00 37.55 2.57
4605 8309 4.212425 ACGCAAATCTTCGTGTACAATCAA 59.788 37.500 0.00 0.00 37.55 2.57
4606 8310 3.743911 ACGCAAATCTTCGTGTACAATCA 59.256 39.130 0.00 0.00 37.55 2.57
4607 8311 4.322101 ACGCAAATCTTCGTGTACAATC 57.678 40.909 0.00 0.00 37.55 2.67
4615 8319 2.396590 ATACCCACGCAAATCTTCGT 57.603 45.000 0.00 0.00 39.79 3.85
4616 8320 3.757745 AAATACCCACGCAAATCTTCG 57.242 42.857 0.00 0.00 0.00 3.79
4617 8321 5.310720 AGAAAATACCCACGCAAATCTTC 57.689 39.130 0.00 0.00 0.00 2.87
4618 8322 5.722021 AAGAAAATACCCACGCAAATCTT 57.278 34.783 0.00 0.00 0.00 2.40
4619 8323 5.722021 AAAGAAAATACCCACGCAAATCT 57.278 34.783 0.00 0.00 0.00 2.40
4620 8324 6.156519 AGAAAAGAAAATACCCACGCAAATC 58.843 36.000 0.00 0.00 0.00 2.17
4621 8325 6.096673 AGAAAAGAAAATACCCACGCAAAT 57.903 33.333 0.00 0.00 0.00 2.32
4622 8326 5.523438 AGAAAAGAAAATACCCACGCAAA 57.477 34.783 0.00 0.00 0.00 3.68
4623 8327 6.827586 ATAGAAAAGAAAATACCCACGCAA 57.172 33.333 0.00 0.00 0.00 4.85
4624 8328 6.827586 AATAGAAAAGAAAATACCCACGCA 57.172 33.333 0.00 0.00 0.00 5.24
4625 8329 8.528917 AAAAATAGAAAAGAAAATACCCACGC 57.471 30.769 0.00 0.00 0.00 5.34
4626 8330 9.908152 AGAAAAATAGAAAAGAAAATACCCACG 57.092 29.630 0.00 0.00 0.00 4.94
4648 8352 9.762933 AGTGATTTAAGCAAGCATAAAAAGAAA 57.237 25.926 6.57 0.00 32.10 2.52
4649 8353 9.762933 AAGTGATTTAAGCAAGCATAAAAAGAA 57.237 25.926 6.57 0.00 32.10 2.52
4655 8359 9.177608 ACATCTAAGTGATTTAAGCAAGCATAA 57.822 29.630 0.00 0.00 32.10 1.90
4656 8360 8.615211 CACATCTAAGTGATTTAAGCAAGCATA 58.385 33.333 0.00 0.00 42.05 3.14
4657 8361 7.121759 ACACATCTAAGTGATTTAAGCAAGCAT 59.878 33.333 0.57 0.00 42.05 3.79
4658 8362 6.430925 ACACATCTAAGTGATTTAAGCAAGCA 59.569 34.615 0.57 0.00 42.05 3.91
4659 8363 6.846350 ACACATCTAAGTGATTTAAGCAAGC 58.154 36.000 0.57 0.00 42.05 4.01
4670 8374 9.946165 CGTCATAGTTATTACACATCTAAGTGA 57.054 33.333 0.57 0.00 42.05 3.41
4671 8375 9.946165 TCGTCATAGTTATTACACATCTAAGTG 57.054 33.333 0.00 0.00 44.93 3.16
4676 8380 8.851145 ACATCTCGTCATAGTTATTACACATCT 58.149 33.333 0.00 0.00 0.00 2.90
4677 8381 8.906693 CACATCTCGTCATAGTTATTACACATC 58.093 37.037 0.00 0.00 0.00 3.06
4678 8382 7.382488 GCACATCTCGTCATAGTTATTACACAT 59.618 37.037 0.00 0.00 0.00 3.21
4679 8383 6.695713 GCACATCTCGTCATAGTTATTACACA 59.304 38.462 0.00 0.00 0.00 3.72
4680 8384 6.144080 GGCACATCTCGTCATAGTTATTACAC 59.856 42.308 0.00 0.00 0.00 2.90
4681 8385 6.213677 GGCACATCTCGTCATAGTTATTACA 58.786 40.000 0.00 0.00 0.00 2.41
4682 8386 5.634020 GGGCACATCTCGTCATAGTTATTAC 59.366 44.000 0.00 0.00 0.00 1.89
4683 8387 5.538813 AGGGCACATCTCGTCATAGTTATTA 59.461 40.000 0.00 0.00 0.00 0.98
4684 8388 4.345257 AGGGCACATCTCGTCATAGTTATT 59.655 41.667 0.00 0.00 0.00 1.40
4685 8389 3.898123 AGGGCACATCTCGTCATAGTTAT 59.102 43.478 0.00 0.00 0.00 1.89
4686 8390 3.296854 AGGGCACATCTCGTCATAGTTA 58.703 45.455 0.00 0.00 0.00 2.24
4687 8391 2.111384 AGGGCACATCTCGTCATAGTT 58.889 47.619 0.00 0.00 0.00 2.24
4688 8392 1.781786 AGGGCACATCTCGTCATAGT 58.218 50.000 0.00 0.00 0.00 2.12
4689 8393 4.051922 GTTTAGGGCACATCTCGTCATAG 58.948 47.826 0.00 0.00 0.00 2.23
4690 8394 3.449377 TGTTTAGGGCACATCTCGTCATA 59.551 43.478 0.00 0.00 0.00 2.15
4691 8395 2.236146 TGTTTAGGGCACATCTCGTCAT 59.764 45.455 0.00 0.00 0.00 3.06
4692 8396 1.621317 TGTTTAGGGCACATCTCGTCA 59.379 47.619 0.00 0.00 0.00 4.35
4693 8397 2.000447 GTGTTTAGGGCACATCTCGTC 59.000 52.381 0.00 0.00 36.88 4.20
4694 8398 1.346395 TGTGTTTAGGGCACATCTCGT 59.654 47.619 0.00 0.00 41.32 4.18
4695 8399 1.732259 GTGTGTTTAGGGCACATCTCG 59.268 52.381 1.42 0.00 46.66 4.04
4696 8400 2.778299 TGTGTGTTTAGGGCACATCTC 58.222 47.619 1.42 0.00 46.66 2.75
4697 8401 2.949177 TGTGTGTTTAGGGCACATCT 57.051 45.000 1.42 0.00 46.66 2.90
4698 8402 4.700213 ACTTATGTGTGTTTAGGGCACATC 59.300 41.667 11.88 1.14 46.93 3.06
4700 8404 4.093472 ACTTATGTGTGTTTAGGGCACA 57.907 40.909 0.00 0.00 45.48 4.57
4701 8405 5.447624 AAACTTATGTGTGTTTAGGGCAC 57.552 39.130 0.00 0.00 35.01 5.01
4702 8406 6.472686 AAAAACTTATGTGTGTTTAGGGCA 57.527 33.333 0.00 0.00 35.63 5.36
4733 8437 5.613329 TCTAGGGTTAGCTTCGTTTGAAAA 58.387 37.500 0.00 0.00 32.66 2.29
4771 8475 1.769733 CCGTGCATTGTGTTTTCCTG 58.230 50.000 0.00 0.00 0.00 3.86
4865 8571 9.319143 CGCTTTTATATTATAGGATGAAGGGAG 57.681 37.037 0.00 0.00 0.00 4.30
4866 8572 8.822805 ACGCTTTTATATTATAGGATGAAGGGA 58.177 33.333 0.00 0.00 0.00 4.20
4867 8573 9.449719 AACGCTTTTATATTATAGGATGAAGGG 57.550 33.333 0.00 0.00 0.00 3.95
4897 8603 9.823647 CCCTCCATCACATAATATAATAGTGTC 57.176 37.037 0.00 0.00 0.00 3.67
4898 8604 9.560860 TCCCTCCATCACATAATATAATAGTGT 57.439 33.333 0.00 0.00 0.00 3.55
4913 9520 6.603201 TGAAATTTTCATACTCCCTCCATCAC 59.397 38.462 7.74 0.00 34.08 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.