Multiple sequence alignment - TraesCS5D01G181900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G181900 chr5D 100.000 3917 0 0 1 3917 283004053 283007969 0.000000e+00 7234.0
1 TraesCS5D01G181900 chr5D 97.483 596 9 5 1 590 399373108 399373703 0.000000e+00 1013.0
2 TraesCS5D01G181900 chr5D 96.931 554 10 4 43 590 282995643 282996195 0.000000e+00 922.0
3 TraesCS5D01G181900 chr5D 86.875 160 17 3 3638 3796 528717433 528717277 4.020000e-40 176.0
4 TraesCS5D01G181900 chr5D 94.828 58 3 0 3860 3917 320886290 320886233 1.500000e-14 91.6
5 TraesCS5D01G181900 chr5A 94.485 2883 129 20 807 3673 375282731 375285599 0.000000e+00 4416.0
6 TraesCS5D01G181900 chr5A 86.875 160 17 3 3638 3796 656872440 656872284 4.020000e-40 176.0
7 TraesCS5D01G181900 chr5A 91.071 56 4 1 3785 3839 375285608 375285663 1.510000e-09 75.0
8 TraesCS5D01G181900 chr5B 94.338 2808 125 16 847 3642 321209104 321211889 0.000000e+00 4274.0
9 TraesCS5D01G181900 chr5B 86.250 160 18 3 3638 3796 665744624 665744468 1.870000e-38 171.0
10 TraesCS5D01G181900 chr5B 92.982 57 3 1 3785 3840 321211927 321211983 9.020000e-12 82.4
11 TraesCS5D01G181900 chr2D 97.631 591 10 4 1 590 526784322 526784909 0.000000e+00 1011.0
12 TraesCS5D01G181900 chr2D 97.462 591 10 4 1 590 526776345 526776931 0.000000e+00 1003.0
13 TraesCS5D01G181900 chr2D 95.198 479 17 6 118 594 452064518 452064044 0.000000e+00 752.0
14 TraesCS5D01G181900 chr2D 76.214 597 91 34 5 590 337886402 337886958 6.450000e-68 268.0
15 TraesCS5D01G181900 chr2D 92.899 169 8 3 5 173 337894744 337894908 3.910000e-60 243.0
16 TraesCS5D01G181900 chr3D 97.131 488 9 4 109 595 70061676 70061193 0.000000e+00 819.0
17 TraesCS5D01G181900 chr3D 94.643 56 3 0 3862 3917 463808945 463809000 1.940000e-13 87.9
18 TraesCS5D01G181900 chr3D 89.706 68 6 1 3850 3917 390418420 390418354 6.970000e-13 86.1
19 TraesCS5D01G181900 chr6D 96.537 462 11 5 132 590 267588472 267588931 0.000000e+00 760.0
20 TraesCS5D01G181900 chr6D 85.455 165 20 3 3643 3804 392273226 392273063 6.730000e-38 169.0
21 TraesCS5D01G181900 chr1D 96.718 457 12 3 136 590 398892043 398891588 0.000000e+00 758.0
22 TraesCS5D01G181900 chr1D 87.742 155 16 3 3640 3792 314013533 314013686 1.120000e-40 178.0
23 TraesCS5D01G181900 chr7D 95.923 466 14 5 132 594 18421107 18421570 0.000000e+00 750.0
24 TraesCS5D01G181900 chr7D 77.741 602 90 29 1 590 17803070 17803639 2.920000e-86 329.0
25 TraesCS5D01G181900 chr7D 87.013 154 19 1 3643 3795 152649421 152649268 5.200000e-39 172.0
26 TraesCS5D01G181900 chr7D 94.828 58 3 0 3860 3917 176125276 176125219 1.500000e-14 91.6
27 TraesCS5D01G181900 chr4D 78.904 602 109 13 1 590 430863675 430864270 3.670000e-105 392.0
28 TraesCS5D01G181900 chr4D 78.523 596 88 29 7 590 170904603 170904036 4.810000e-94 355.0
29 TraesCS5D01G181900 chr7A 86.709 158 19 2 3643 3799 579808527 579808371 1.450000e-39 174.0
30 TraesCS5D01G181900 chr7A 86.076 158 22 0 3639 3796 547102782 547102939 1.870000e-38 171.0
31 TraesCS5D01G181900 chr4A 87.097 155 16 3 3643 3796 490599703 490599552 5.200000e-39 172.0
32 TraesCS5D01G181900 chr6B 96.429 56 2 0 3862 3917 500227460 500227405 4.170000e-15 93.5
33 TraesCS5D01G181900 chr6B 94.643 56 3 0 3862 3917 597021407 597021352 1.940000e-13 87.9
34 TraesCS5D01G181900 chr4B 94.828 58 3 0 3860 3917 527282517 527282574 1.500000e-14 91.6
35 TraesCS5D01G181900 chr1A 94.828 58 2 1 3860 3917 280110274 280110218 5.390000e-14 89.8
36 TraesCS5D01G181900 chr2B 93.220 59 4 0 3859 3917 710283517 710283459 1.940000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G181900 chr5D 283004053 283007969 3916 False 7234.0 7234 100.000 1 3917 1 chr5D.!!$F2 3916
1 TraesCS5D01G181900 chr5D 399373108 399373703 595 False 1013.0 1013 97.483 1 590 1 chr5D.!!$F3 589
2 TraesCS5D01G181900 chr5D 282995643 282996195 552 False 922.0 922 96.931 43 590 1 chr5D.!!$F1 547
3 TraesCS5D01G181900 chr5A 375282731 375285663 2932 False 2245.5 4416 92.778 807 3839 2 chr5A.!!$F1 3032
4 TraesCS5D01G181900 chr5B 321209104 321211983 2879 False 2178.2 4274 93.660 847 3840 2 chr5B.!!$F1 2993
5 TraesCS5D01G181900 chr2D 526784322 526784909 587 False 1011.0 1011 97.631 1 590 1 chr2D.!!$F4 589
6 TraesCS5D01G181900 chr2D 526776345 526776931 586 False 1003.0 1003 97.462 1 590 1 chr2D.!!$F3 589
7 TraesCS5D01G181900 chr2D 337886402 337886958 556 False 268.0 268 76.214 5 590 1 chr2D.!!$F1 585
8 TraesCS5D01G181900 chr7D 17803070 17803639 569 False 329.0 329 77.741 1 590 1 chr7D.!!$F1 589
9 TraesCS5D01G181900 chr4D 430863675 430864270 595 False 392.0 392 78.904 1 590 1 chr4D.!!$F1 589
10 TraesCS5D01G181900 chr4D 170904036 170904603 567 True 355.0 355 78.523 7 590 1 chr4D.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 710 0.028110 GGTCGGAAGCATCGCAATTC 59.972 55.0 0.0 0.0 0.0 2.17 F
1134 1159 0.036732 TCTTCGCCACCTCAAGCAAT 59.963 50.0 0.0 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2038 0.034767 CTGGCTCCTCAATGCTGGAA 60.035 55.000 0.0 0.0 31.23 3.53 R
3096 3123 2.226200 TCATTGACTGATGCAACAACGG 59.774 45.455 0.0 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
509 532 4.980590 TGAATTTGAACGGGATTGAATCG 58.019 39.130 0.00 0.00 0.00 3.34
576 600 6.543831 AGCAAGGAATTACTGTAGCCTAATTG 59.456 38.462 0.00 4.06 0.00 2.32
590 614 0.390603 TAATTGTCCGGGCGTCACAG 60.391 55.000 0.00 0.00 0.00 3.66
591 615 3.605749 ATTGTCCGGGCGTCACAGG 62.606 63.158 0.00 0.00 0.00 4.00
605 629 4.614036 CAGGCGGGGTGGGGTTTT 62.614 66.667 0.00 0.00 0.00 2.43
606 630 4.295199 AGGCGGGGTGGGGTTTTC 62.295 66.667 0.00 0.00 0.00 2.29
608 632 4.607025 GCGGGGTGGGGTTTTCCA 62.607 66.667 0.00 0.00 42.91 3.53
609 633 2.443324 CGGGGTGGGGTTTTCCAT 59.557 61.111 0.00 0.00 42.91 3.41
610 634 1.229051 CGGGGTGGGGTTTTCCATT 60.229 57.895 0.00 0.00 42.91 3.16
611 635 0.039911 CGGGGTGGGGTTTTCCATTA 59.960 55.000 0.00 0.00 42.91 1.90
612 636 1.342574 CGGGGTGGGGTTTTCCATTAT 60.343 52.381 0.00 0.00 42.91 1.28
613 637 2.115427 GGGGTGGGGTTTTCCATTATG 58.885 52.381 0.00 0.00 42.91 1.90
614 638 2.292587 GGGGTGGGGTTTTCCATTATGA 60.293 50.000 0.00 0.00 42.91 2.15
615 639 2.764010 GGGTGGGGTTTTCCATTATGAC 59.236 50.000 0.00 0.00 42.91 3.06
616 640 2.425668 GGTGGGGTTTTCCATTATGACG 59.574 50.000 0.00 0.00 42.91 4.35
617 641 3.349022 GTGGGGTTTTCCATTATGACGA 58.651 45.455 0.00 0.00 42.91 4.20
618 642 3.951680 GTGGGGTTTTCCATTATGACGAT 59.048 43.478 0.00 0.00 42.91 3.73
619 643 4.036380 GTGGGGTTTTCCATTATGACGATC 59.964 45.833 0.00 0.00 42.91 3.69
620 644 4.204012 GGGGTTTTCCATTATGACGATCA 58.796 43.478 0.00 0.00 42.91 2.92
621 645 4.827284 GGGGTTTTCCATTATGACGATCAT 59.173 41.667 0.00 0.00 42.91 2.45
622 646 5.301805 GGGGTTTTCCATTATGACGATCATT 59.698 40.000 5.94 0.00 42.91 2.57
623 647 6.208644 GGGTTTTCCATTATGACGATCATTG 58.791 40.000 5.94 1.03 42.91 2.82
624 648 6.208644 GGTTTTCCATTATGACGATCATTGG 58.791 40.000 5.94 8.38 36.54 3.16
625 649 6.183360 GGTTTTCCATTATGACGATCATTGGT 60.183 38.462 13.60 0.00 36.57 3.67
626 650 6.618287 TTTCCATTATGACGATCATTGGTC 57.382 37.500 13.60 0.00 36.57 4.02
627 651 4.641396 TCCATTATGACGATCATTGGTCC 58.359 43.478 13.60 0.00 36.57 4.46
628 652 3.433274 CCATTATGACGATCATTGGTCCG 59.567 47.826 5.94 0.00 38.26 4.79
629 653 4.306600 CATTATGACGATCATTGGTCCGA 58.693 43.478 5.94 0.00 38.26 4.55
630 654 2.515926 ATGACGATCATTGGTCCGAG 57.484 50.000 0.00 0.00 32.13 4.63
631 655 0.459899 TGACGATCATTGGTCCGAGG 59.540 55.000 0.00 0.00 30.14 4.63
632 656 0.744874 GACGATCATTGGTCCGAGGA 59.255 55.000 0.00 0.00 0.00 3.71
633 657 0.460311 ACGATCATTGGTCCGAGGAC 59.540 55.000 13.61 13.61 43.87 3.85
634 658 0.595053 CGATCATTGGTCCGAGGACG 60.595 60.000 15.28 2.78 45.41 4.79
652 676 4.966787 GCCAGCGGGGTTTGACCA 62.967 66.667 4.64 0.00 41.02 4.02
653 677 2.203422 CCAGCGGGGTTTGACCAA 60.203 61.111 0.00 0.00 41.02 3.67
654 678 1.830408 CCAGCGGGGTTTGACCAAA 60.830 57.895 0.00 0.00 41.02 3.28
655 679 1.395826 CCAGCGGGGTTTGACCAAAA 61.396 55.000 0.00 0.00 41.02 2.44
656 680 0.461961 CAGCGGGGTTTGACCAAAAA 59.538 50.000 0.00 0.00 41.02 1.94
657 681 0.750249 AGCGGGGTTTGACCAAAAAG 59.250 50.000 0.00 0.00 41.02 2.27
658 682 0.878523 GCGGGGTTTGACCAAAAAGC 60.879 55.000 0.00 0.00 41.02 3.51
659 683 0.750249 CGGGGTTTGACCAAAAAGCT 59.250 50.000 0.00 0.00 41.02 3.74
660 684 1.537990 CGGGGTTTGACCAAAAAGCTG 60.538 52.381 0.00 0.00 41.02 4.24
661 685 1.760029 GGGGTTTGACCAAAAAGCTGA 59.240 47.619 0.00 0.00 41.02 4.26
662 686 2.224042 GGGGTTTGACCAAAAAGCTGAG 60.224 50.000 0.00 0.00 41.02 3.35
663 687 2.224042 GGGTTTGACCAAAAAGCTGAGG 60.224 50.000 0.00 0.00 41.02 3.86
664 688 2.224042 GGTTTGACCAAAAAGCTGAGGG 60.224 50.000 0.00 0.00 38.42 4.30
665 689 1.039856 TTGACCAAAAAGCTGAGGGC 58.960 50.000 0.00 0.00 42.19 5.19
675 699 4.148825 CTGAGGGCGGGTCGGAAG 62.149 72.222 0.00 0.00 0.00 3.46
682 706 4.812476 CGGGTCGGAAGCATCGCA 62.812 66.667 0.00 0.00 0.00 5.10
683 707 2.435938 GGGTCGGAAGCATCGCAA 60.436 61.111 0.00 0.00 0.00 4.85
684 708 1.819632 GGGTCGGAAGCATCGCAAT 60.820 57.895 0.00 0.00 0.00 3.56
685 709 1.376609 GGGTCGGAAGCATCGCAATT 61.377 55.000 0.00 0.00 0.00 2.32
686 710 0.028110 GGTCGGAAGCATCGCAATTC 59.972 55.000 0.00 0.00 0.00 2.17
687 711 0.726827 GTCGGAAGCATCGCAATTCA 59.273 50.000 0.00 0.00 0.00 2.57
688 712 1.009078 TCGGAAGCATCGCAATTCAG 58.991 50.000 0.00 0.00 0.00 3.02
689 713 0.590732 CGGAAGCATCGCAATTCAGC 60.591 55.000 0.00 0.00 0.00 4.26
690 714 0.248784 GGAAGCATCGCAATTCAGCC 60.249 55.000 0.00 0.00 0.00 4.85
691 715 0.737219 GAAGCATCGCAATTCAGCCT 59.263 50.000 0.00 0.00 0.00 4.58
692 716 1.133790 GAAGCATCGCAATTCAGCCTT 59.866 47.619 0.00 0.00 0.00 4.35
693 717 2.042686 AGCATCGCAATTCAGCCTTA 57.957 45.000 0.00 0.00 0.00 2.69
694 718 2.579873 AGCATCGCAATTCAGCCTTAT 58.420 42.857 0.00 0.00 0.00 1.73
695 719 2.954318 AGCATCGCAATTCAGCCTTATT 59.046 40.909 0.00 0.00 0.00 1.40
696 720 3.382546 AGCATCGCAATTCAGCCTTATTT 59.617 39.130 0.00 0.00 0.00 1.40
697 721 4.114794 GCATCGCAATTCAGCCTTATTTT 58.885 39.130 0.00 0.00 0.00 1.82
698 722 4.567959 GCATCGCAATTCAGCCTTATTTTT 59.432 37.500 0.00 0.00 0.00 1.94
699 723 5.276536 GCATCGCAATTCAGCCTTATTTTTC 60.277 40.000 0.00 0.00 0.00 2.29
700 724 4.411327 TCGCAATTCAGCCTTATTTTTCG 58.589 39.130 0.00 0.00 0.00 3.46
701 725 4.083003 TCGCAATTCAGCCTTATTTTTCGT 60.083 37.500 0.00 0.00 0.00 3.85
702 726 4.030529 CGCAATTCAGCCTTATTTTTCGTG 59.969 41.667 0.00 0.00 0.00 4.35
703 727 5.160641 GCAATTCAGCCTTATTTTTCGTGA 58.839 37.500 0.00 0.00 0.00 4.35
704 728 5.287035 GCAATTCAGCCTTATTTTTCGTGAG 59.713 40.000 0.00 0.00 0.00 3.51
705 729 6.611381 CAATTCAGCCTTATTTTTCGTGAGA 58.389 36.000 0.00 0.00 39.20 3.27
718 742 3.443099 TCGTGAGAATGACTATGGCTG 57.557 47.619 0.00 0.00 37.03 4.85
719 743 2.101415 TCGTGAGAATGACTATGGCTGG 59.899 50.000 0.00 0.00 37.03 4.85
720 744 2.159043 CGTGAGAATGACTATGGCTGGT 60.159 50.000 0.00 0.00 0.00 4.00
721 745 3.201290 GTGAGAATGACTATGGCTGGTG 58.799 50.000 0.00 0.00 0.00 4.17
722 746 2.171237 TGAGAATGACTATGGCTGGTGG 59.829 50.000 0.00 0.00 0.00 4.61
723 747 2.435805 GAGAATGACTATGGCTGGTGGA 59.564 50.000 0.00 0.00 0.00 4.02
724 748 2.846206 AGAATGACTATGGCTGGTGGAA 59.154 45.455 0.00 0.00 0.00 3.53
725 749 3.118112 AGAATGACTATGGCTGGTGGAAG 60.118 47.826 0.00 0.00 0.00 3.46
726 750 0.911769 TGACTATGGCTGGTGGAAGG 59.088 55.000 0.00 0.00 0.00 3.46
727 751 0.912486 GACTATGGCTGGTGGAAGGT 59.088 55.000 0.00 0.00 0.00 3.50
728 752 1.282157 GACTATGGCTGGTGGAAGGTT 59.718 52.381 0.00 0.00 0.00 3.50
729 753 1.710809 ACTATGGCTGGTGGAAGGTTT 59.289 47.619 0.00 0.00 0.00 3.27
730 754 2.110011 ACTATGGCTGGTGGAAGGTTTT 59.890 45.455 0.00 0.00 0.00 2.43
731 755 2.990740 ATGGCTGGTGGAAGGTTTTA 57.009 45.000 0.00 0.00 0.00 1.52
732 756 2.286365 TGGCTGGTGGAAGGTTTTAG 57.714 50.000 0.00 0.00 0.00 1.85
733 757 1.203001 TGGCTGGTGGAAGGTTTTAGG 60.203 52.381 0.00 0.00 0.00 2.69
734 758 1.545841 GCTGGTGGAAGGTTTTAGGG 58.454 55.000 0.00 0.00 0.00 3.53
735 759 1.891011 GCTGGTGGAAGGTTTTAGGGG 60.891 57.143 0.00 0.00 0.00 4.79
736 760 0.781278 TGGTGGAAGGTTTTAGGGGG 59.219 55.000 0.00 0.00 0.00 5.40
753 777 2.159179 GGGGGCATATTTGTGGAAGT 57.841 50.000 0.00 0.00 0.00 3.01
754 778 3.306472 GGGGGCATATTTGTGGAAGTA 57.694 47.619 0.00 0.00 0.00 2.24
755 779 3.637769 GGGGGCATATTTGTGGAAGTAA 58.362 45.455 0.00 0.00 0.00 2.24
756 780 4.223144 GGGGGCATATTTGTGGAAGTAAT 58.777 43.478 0.00 0.00 0.00 1.89
757 781 5.390387 GGGGGCATATTTGTGGAAGTAATA 58.610 41.667 0.00 0.00 0.00 0.98
758 782 5.836358 GGGGGCATATTTGTGGAAGTAATAA 59.164 40.000 0.00 0.00 0.00 1.40
759 783 6.325286 GGGGGCATATTTGTGGAAGTAATAAA 59.675 38.462 0.00 0.00 0.00 1.40
760 784 7.207383 GGGGCATATTTGTGGAAGTAATAAAC 58.793 38.462 0.00 0.00 0.00 2.01
761 785 7.069455 GGGGCATATTTGTGGAAGTAATAAACT 59.931 37.037 0.00 0.00 41.49 2.66
794 818 9.467258 GATTATAAGAGATCTGCTAGATGATGC 57.533 37.037 0.00 0.00 34.53 3.91
795 819 8.592529 TTATAAGAGATCTGCTAGATGATGCT 57.407 34.615 0.00 0.00 34.53 3.79
796 820 5.811796 AAGAGATCTGCTAGATGATGCTT 57.188 39.130 0.00 0.11 34.53 3.91
797 821 6.914654 AAGAGATCTGCTAGATGATGCTTA 57.085 37.500 0.00 0.00 34.53 3.09
798 822 6.914654 AGAGATCTGCTAGATGATGCTTAA 57.085 37.500 0.00 0.00 34.53 1.85
799 823 7.484993 AGAGATCTGCTAGATGATGCTTAAT 57.515 36.000 0.00 0.00 34.53 1.40
800 824 7.549839 AGAGATCTGCTAGATGATGCTTAATC 58.450 38.462 0.00 0.00 34.53 1.75
801 825 6.642430 AGATCTGCTAGATGATGCTTAATCC 58.358 40.000 0.00 0.00 34.53 3.01
802 826 5.157940 TCTGCTAGATGATGCTTAATCCC 57.842 43.478 0.00 0.00 34.00 3.85
803 827 4.842948 TCTGCTAGATGATGCTTAATCCCT 59.157 41.667 0.00 0.00 34.00 4.20
804 828 6.019108 TCTGCTAGATGATGCTTAATCCCTA 58.981 40.000 0.00 0.00 34.00 3.53
805 829 6.498303 TCTGCTAGATGATGCTTAATCCCTAA 59.502 38.462 0.00 0.00 34.00 2.69
806 830 7.016563 TCTGCTAGATGATGCTTAATCCCTAAA 59.983 37.037 0.00 0.00 34.00 1.85
807 831 7.517320 TGCTAGATGATGCTTAATCCCTAAAA 58.483 34.615 0.00 0.00 34.00 1.52
808 832 7.998383 TGCTAGATGATGCTTAATCCCTAAAAA 59.002 33.333 0.00 0.00 34.00 1.94
809 833 8.293157 GCTAGATGATGCTTAATCCCTAAAAAC 58.707 37.037 0.00 0.00 34.00 2.43
810 834 9.566432 CTAGATGATGCTTAATCCCTAAAAACT 57.434 33.333 0.00 0.00 34.00 2.66
811 835 8.829373 AGATGATGCTTAATCCCTAAAAACTT 57.171 30.769 0.00 0.00 34.00 2.66
915 940 1.536418 CATCCGGATCCCCTGCCTA 60.536 63.158 15.88 0.00 0.00 3.93
916 941 0.911525 CATCCGGATCCCCTGCCTAT 60.912 60.000 15.88 0.00 0.00 2.57
1134 1159 0.036732 TCTTCGCCACCTCAAGCAAT 59.963 50.000 0.00 0.00 0.00 3.56
1168 1193 3.071206 TCCGCCTGCTCCTCAGAC 61.071 66.667 0.00 0.00 45.72 3.51
1368 1393 0.737715 ACTTCACGCTCTCAATCGCC 60.738 55.000 0.00 0.00 0.00 5.54
1377 1402 3.605749 CTCAATCGCCCACCACGGT 62.606 63.158 0.00 0.00 0.00 4.83
1470 1495 1.583986 GCAGTGTGAGCTCTCTCGT 59.416 57.895 16.19 0.00 42.26 4.18
1620 1645 4.147449 TCGCCGGAGCATGTCAGG 62.147 66.667 5.05 9.12 43.18 3.86
1749 1774 4.631377 GTCGATGTCACATTCTTTGATCCA 59.369 41.667 0.00 0.00 0.00 3.41
1857 1882 5.186992 AGGCAAAGGTTTTGTGTTTCTTAGT 59.813 36.000 3.77 0.00 0.00 2.24
1941 1966 2.937149 CTCTGGAGCTGATGATGTTGTG 59.063 50.000 0.00 0.00 0.00 3.33
1959 1984 2.561419 TGTGCTCTACCTACTGACCAAC 59.439 50.000 0.00 0.00 0.00 3.77
1993 2018 4.144297 TGACACAGATTTTGGAGGGAAAG 58.856 43.478 0.00 0.00 0.00 2.62
1995 2020 4.546674 ACACAGATTTTGGAGGGAAAGTT 58.453 39.130 0.00 0.00 0.00 2.66
2301 2326 2.827921 GCCATTCAAGGGTCATTTCTGT 59.172 45.455 0.00 0.00 0.00 3.41
2567 2592 5.653769 TGTAGGTATGGTAAGCTCGTTAGTT 59.346 40.000 0.00 0.00 0.00 2.24
2574 2599 4.632688 TGGTAAGCTCGTTAGTTATTTGCC 59.367 41.667 0.00 0.00 0.00 4.52
2657 2682 3.962063 TCATGTGCCTTTATGCCATCATT 59.038 39.130 0.00 0.00 34.22 2.57
2763 2790 6.959639 ACAAACTAGTGAATGTGACCATTT 57.040 33.333 0.00 0.00 41.37 2.32
2807 2834 5.582665 TGTTTGCACCTTCCATTTTTGTTAC 59.417 36.000 0.00 0.00 0.00 2.50
2970 2997 2.232208 CTGGGCCAACAAAAGGAAGATC 59.768 50.000 8.04 0.00 0.00 2.75
3033 3060 5.578336 TCATCAGAAATCATCAACAGACGAC 59.422 40.000 0.00 0.00 0.00 4.34
3096 3123 6.823689 TCAATCCAGCCAGTTAAGTTATCTTC 59.176 38.462 0.00 0.00 35.36 2.87
3115 3142 2.503331 TCCGTTGTTGCATCAGTCAAT 58.497 42.857 0.00 0.00 0.00 2.57
3135 3162 8.375506 AGTCAATGAAACAATAGAAGAGGTGTA 58.624 33.333 0.00 0.00 0.00 2.90
3164 3191 2.602878 CACTTGATCAACCTTGCATGC 58.397 47.619 11.82 11.82 0.00 4.06
3211 3250 7.809331 TCTTTCTATGTTGTAGCATGCTTTTTG 59.191 33.333 28.02 8.49 0.00 2.44
3216 3255 4.565962 TGTTGTAGCATGCTTTTTGTTGTG 59.434 37.500 28.02 0.00 0.00 3.33
3218 3257 2.607631 AGCATGCTTTTTGTTGTGCT 57.392 40.000 16.30 0.00 38.03 4.40
3224 3263 5.392286 CATGCTTTTTGTTGTGCTTTTTGT 58.608 33.333 0.00 0.00 0.00 2.83
3249 3288 6.145209 TGTGACAAATTGTGTTGTTGAAACTG 59.855 34.615 2.20 0.00 41.78 3.16
3253 3292 5.659440 AATTGTGTTGTTGAAACTGGAGT 57.341 34.783 0.00 0.00 0.00 3.85
3274 3313 7.839705 TGGAGTTTAGAGTCAGGTTGTAGATAT 59.160 37.037 0.00 0.00 0.00 1.63
3315 3354 5.177327 CACAACACAGTTCTTGCAAAGTTTT 59.823 36.000 0.00 0.00 46.34 2.43
3317 3356 6.586082 ACAACACAGTTCTTGCAAAGTTTTAG 59.414 34.615 0.00 0.00 46.34 1.85
3375 3414 9.900264 CTTGCTGTTTGAAGTAAAACATAAAAC 57.100 29.630 3.21 0.00 46.12 2.43
3397 3440 6.062258 ACATAATGGCTAACTGTTACTGGT 57.938 37.500 0.00 0.00 0.00 4.00
3414 3457 4.469657 ACTGGTTTGCCAAGTCTGAATTA 58.530 39.130 0.00 0.00 45.51 1.40
3416 3459 3.252215 TGGTTTGCCAAGTCTGAATTACG 59.748 43.478 0.00 0.00 42.83 3.18
3417 3460 3.252458 GGTTTGCCAAGTCTGAATTACGT 59.748 43.478 0.00 0.00 34.09 3.57
3428 3473 5.405571 AGTCTGAATTACGTGCAACTGTAAG 59.594 40.000 0.00 1.34 38.47 2.34
3465 3511 7.446931 TGATACAAAAAGGAATAGTCAACTGCA 59.553 33.333 0.00 0.00 0.00 4.41
3507 3555 5.280654 ACAAAGCAATGATGTTTGTTCCT 57.719 34.783 3.86 0.00 37.43 3.36
3509 3557 6.815089 ACAAAGCAATGATGTTTGTTCCTTA 58.185 32.000 3.86 0.00 37.43 2.69
3517 3565 4.517075 TGATGTTTGTTCCTTATGTCGCAA 59.483 37.500 0.00 0.00 0.00 4.85
3584 3632 1.402968 CTGCACATCATTCCTTTCGGG 59.597 52.381 0.00 0.00 0.00 5.14
3606 3654 1.795768 TACAGTTCAGCCGAGCAAAG 58.204 50.000 0.00 0.00 0.00 2.77
3669 3717 6.898041 TCCATCTGTTCACAAATTTAAGACG 58.102 36.000 0.00 0.00 0.00 4.18
3673 3721 8.682016 CATCTGTTCACAAATTTAAGACGTTTC 58.318 33.333 0.00 0.00 0.00 2.78
3674 3722 7.753659 TCTGTTCACAAATTTAAGACGTTTCA 58.246 30.769 0.00 0.00 0.00 2.69
3678 3726 9.872757 GTTCACAAATTTAAGACGTTTCAGATA 57.127 29.630 0.00 0.00 0.00 1.98
3690 3738 7.936584 AGACGTTTCAGATATTTTTGTTTGGA 58.063 30.769 0.00 0.00 0.00 3.53
3691 3739 7.860872 AGACGTTTCAGATATTTTTGTTTGGAC 59.139 33.333 0.00 0.00 0.00 4.02
3693 3741 8.842280 ACGTTTCAGATATTTTTGTTTGGACTA 58.158 29.630 0.00 0.00 0.00 2.59
3694 3742 9.113876 CGTTTCAGATATTTTTGTTTGGACTAC 57.886 33.333 0.00 0.00 0.00 2.73
3695 3743 9.959749 GTTTCAGATATTTTTGTTTGGACTACA 57.040 29.630 0.00 0.00 0.00 2.74
3699 3747 9.702726 CAGATATTTTTGTTTGGACTACATACG 57.297 33.333 0.00 0.00 34.25 3.06
3700 3748 8.889717 AGATATTTTTGTTTGGACTACATACGG 58.110 33.333 0.00 0.00 34.25 4.02
3701 3749 8.795842 ATATTTTTGTTTGGACTACATACGGA 57.204 30.769 0.00 0.00 34.25 4.69
3702 3750 5.927954 TTTTGTTTGGACTACATACGGAC 57.072 39.130 0.00 0.00 34.25 4.79
3703 3751 4.877378 TTGTTTGGACTACATACGGACT 57.123 40.909 0.00 0.00 34.25 3.85
3704 3752 4.182693 TGTTTGGACTACATACGGACTG 57.817 45.455 0.00 0.00 34.25 3.51
3705 3753 3.827876 TGTTTGGACTACATACGGACTGA 59.172 43.478 0.00 0.00 34.25 3.41
3706 3754 4.281435 TGTTTGGACTACATACGGACTGAA 59.719 41.667 0.00 0.00 34.25 3.02
3707 3755 5.221481 TGTTTGGACTACATACGGACTGAAA 60.221 40.000 0.00 0.00 34.25 2.69
3708 3756 5.670792 TTGGACTACATACGGACTGAAAT 57.329 39.130 0.00 0.00 0.00 2.17
3709 3757 5.006153 TGGACTACATACGGACTGAAATG 57.994 43.478 0.00 0.00 0.00 2.32
3710 3758 4.707934 TGGACTACATACGGACTGAAATGA 59.292 41.667 7.93 0.00 0.00 2.57
3711 3759 5.163550 TGGACTACATACGGACTGAAATGAG 60.164 44.000 7.93 4.83 0.00 2.90
3712 3760 5.163540 GGACTACATACGGACTGAAATGAGT 60.164 44.000 7.93 7.04 0.00 3.41
3713 3761 5.651530 ACTACATACGGACTGAAATGAGTG 58.348 41.667 7.93 0.00 0.00 3.51
3714 3762 4.801330 ACATACGGACTGAAATGAGTGA 57.199 40.909 7.93 0.00 0.00 3.41
3715 3763 5.147330 ACATACGGACTGAAATGAGTGAA 57.853 39.130 7.93 0.00 0.00 3.18
3716 3764 4.929808 ACATACGGACTGAAATGAGTGAAC 59.070 41.667 7.93 0.00 0.00 3.18
3717 3765 3.469008 ACGGACTGAAATGAGTGAACA 57.531 42.857 0.00 0.00 0.00 3.18
3718 3766 3.804036 ACGGACTGAAATGAGTGAACAA 58.196 40.909 0.00 0.00 0.00 2.83
3719 3767 4.196193 ACGGACTGAAATGAGTGAACAAA 58.804 39.130 0.00 0.00 0.00 2.83
3720 3768 4.035208 ACGGACTGAAATGAGTGAACAAAC 59.965 41.667 0.00 0.00 0.00 2.93
3721 3769 4.035091 CGGACTGAAATGAGTGAACAAACA 59.965 41.667 0.00 0.00 0.00 2.83
3722 3770 5.273944 GGACTGAAATGAGTGAACAAACAC 58.726 41.667 0.00 0.00 40.60 3.32
3723 3771 5.163663 GGACTGAAATGAGTGAACAAACACA 60.164 40.000 0.00 0.00 42.45 3.72
3724 3772 6.455360 ACTGAAATGAGTGAACAAACACAT 57.545 33.333 0.00 0.00 42.45 3.21
3725 3773 6.866480 ACTGAAATGAGTGAACAAACACATT 58.134 32.000 0.00 0.00 41.29 2.71
3726 3774 7.995289 ACTGAAATGAGTGAACAAACACATTA 58.005 30.769 0.00 0.00 39.46 1.90
3727 3775 8.465999 ACTGAAATGAGTGAACAAACACATTAA 58.534 29.630 0.00 0.00 39.46 1.40
3728 3776 9.299963 CTGAAATGAGTGAACAAACACATTAAA 57.700 29.630 0.00 0.00 39.46 1.52
3729 3777 9.645059 TGAAATGAGTGAACAAACACATTAAAA 57.355 25.926 0.00 0.00 39.46 1.52
3730 3778 9.900264 GAAATGAGTGAACAAACACATTAAAAC 57.100 29.630 0.00 0.00 39.46 2.43
3731 3779 7.678194 ATGAGTGAACAAACACATTAAAACG 57.322 32.000 0.00 0.00 42.45 3.60
3732 3780 6.613233 TGAGTGAACAAACACATTAAAACGT 58.387 32.000 0.00 0.00 42.45 3.99
3733 3781 7.085116 TGAGTGAACAAACACATTAAAACGTT 58.915 30.769 0.00 0.00 42.45 3.99
3734 3782 7.595502 TGAGTGAACAAACACATTAAAACGTTT 59.404 29.630 7.96 7.96 42.45 3.60
3735 3783 7.944997 AGTGAACAAACACATTAAAACGTTTC 58.055 30.769 15.01 0.00 42.45 2.78
3736 3784 7.810759 AGTGAACAAACACATTAAAACGTTTCT 59.189 29.630 15.01 7.41 42.45 2.52
3737 3785 9.063739 GTGAACAAACACATTAAAACGTTTCTA 57.936 29.630 15.01 5.75 40.11 2.10
3738 3786 9.790389 TGAACAAACACATTAAAACGTTTCTAT 57.210 25.926 15.01 7.93 29.40 1.98
3752 3800 9.537192 AAAACGTTTCTATATACATCCGATTCA 57.463 29.630 15.01 0.00 0.00 2.57
3753 3801 8.516811 AACGTTTCTATATACATCCGATTCAC 57.483 34.615 0.00 0.00 0.00 3.18
3754 3802 7.654568 ACGTTTCTATATACATCCGATTCACA 58.345 34.615 0.00 0.00 0.00 3.58
3755 3803 8.139350 ACGTTTCTATATACATCCGATTCACAA 58.861 33.333 0.00 0.00 0.00 3.33
3756 3804 8.974408 CGTTTCTATATACATCCGATTCACAAA 58.026 33.333 0.00 0.00 0.00 2.83
3805 3853 9.504708 TTTAACAGAGGGAATATGTTTTAACGA 57.495 29.630 0.00 0.00 40.40 3.85
3841 3889 1.126488 TCCTTGCTAGGATGCAGAGG 58.874 55.000 13.28 0.00 45.82 3.69
3842 3890 1.126488 CCTTGCTAGGATGCAGAGGA 58.874 55.000 8.73 0.00 45.05 3.71
3843 3891 1.698532 CCTTGCTAGGATGCAGAGGAT 59.301 52.381 8.73 0.00 45.05 3.24
3844 3892 2.289569 CCTTGCTAGGATGCAGAGGATC 60.290 54.545 8.73 0.00 45.05 3.36
3845 3893 4.577729 CCTTGCTAGGATGCAGAGGATCT 61.578 52.174 8.73 0.00 46.78 2.75
3846 3894 6.364456 CCTTGCTAGGATGCAGAGGATCTC 62.364 54.167 8.73 0.00 43.57 2.75
3865 3913 2.593346 CCAGCTCATGGTCAGTACTC 57.407 55.000 0.00 0.00 44.91 2.59
3866 3914 1.137872 CCAGCTCATGGTCAGTACTCC 59.862 57.143 0.00 0.00 44.91 3.85
3867 3915 1.137872 CAGCTCATGGTCAGTACTCCC 59.862 57.143 0.00 0.00 0.00 4.30
3868 3916 1.007721 AGCTCATGGTCAGTACTCCCT 59.992 52.381 9.06 0.00 0.00 4.20
3869 3917 1.410882 GCTCATGGTCAGTACTCCCTC 59.589 57.143 9.06 0.00 0.00 4.30
3870 3918 2.035632 CTCATGGTCAGTACTCCCTCC 58.964 57.143 9.06 3.30 0.00 4.30
3871 3919 0.747255 CATGGTCAGTACTCCCTCCG 59.253 60.000 9.06 0.00 0.00 4.63
3872 3920 0.335361 ATGGTCAGTACTCCCTCCGT 59.665 55.000 9.06 1.65 0.00 4.69
3873 3921 0.323178 TGGTCAGTACTCCCTCCGTC 60.323 60.000 9.06 0.00 0.00 4.79
3874 3922 1.036481 GGTCAGTACTCCCTCCGTCC 61.036 65.000 0.00 0.00 0.00 4.79
3875 3923 1.077930 TCAGTACTCCCTCCGTCCG 60.078 63.158 0.00 0.00 0.00 4.79
3876 3924 2.119655 CAGTACTCCCTCCGTCCGG 61.120 68.421 0.00 0.00 0.00 5.14
3877 3925 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
3878 3926 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3879 3927 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
3880 3928 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
3881 3929 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
3882 3930 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
3883 3931 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
3884 3932 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
3885 3933 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3886 3934 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3887 3935 2.354403 CCTCCGTCCGGAATTACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
3888 3936 2.671396 CTCCGTCCGGAATTACTTGTTG 59.329 50.000 5.23 0.00 44.66 3.33
3889 3937 1.129811 CCGTCCGGAATTACTTGTTGC 59.870 52.381 5.23 0.00 37.50 4.17
3890 3938 1.201877 CGTCCGGAATTACTTGTTGCG 60.202 52.381 5.23 0.00 39.63 4.85
3894 3942 3.546002 CGGAATTACTTGTTGCGGAAA 57.454 42.857 0.00 0.00 36.87 3.13
3895 3943 4.091453 CGGAATTACTTGTTGCGGAAAT 57.909 40.909 0.00 0.00 36.87 2.17
3896 3944 3.851403 CGGAATTACTTGTTGCGGAAATG 59.149 43.478 0.00 0.00 36.87 2.32
3897 3945 4.173256 GGAATTACTTGTTGCGGAAATGG 58.827 43.478 0.00 0.00 0.00 3.16
3898 3946 4.082463 GGAATTACTTGTTGCGGAAATGGA 60.082 41.667 0.00 0.00 0.00 3.41
3899 3947 5.394115 GGAATTACTTGTTGCGGAAATGGAT 60.394 40.000 0.00 0.00 0.00 3.41
3900 3948 6.183360 GGAATTACTTGTTGCGGAAATGGATA 60.183 38.462 0.00 0.00 0.00 2.59
3901 3949 6.767524 ATTACTTGTTGCGGAAATGGATAA 57.232 33.333 0.00 0.00 0.00 1.75
3902 3950 6.576662 TTACTTGTTGCGGAAATGGATAAA 57.423 33.333 0.00 0.00 0.00 1.40
3903 3951 5.059404 ACTTGTTGCGGAAATGGATAAAG 57.941 39.130 0.00 0.00 0.00 1.85
3904 3952 4.764823 ACTTGTTGCGGAAATGGATAAAGA 59.235 37.500 0.00 0.00 0.00 2.52
3905 3953 5.418840 ACTTGTTGCGGAAATGGATAAAGAT 59.581 36.000 0.00 0.00 0.00 2.40
3906 3954 5.247507 TGTTGCGGAAATGGATAAAGATG 57.752 39.130 0.00 0.00 0.00 2.90
3907 3955 4.097741 TGTTGCGGAAATGGATAAAGATGG 59.902 41.667 0.00 0.00 0.00 3.51
3908 3956 4.163441 TGCGGAAATGGATAAAGATGGA 57.837 40.909 0.00 0.00 0.00 3.41
3909 3957 4.728772 TGCGGAAATGGATAAAGATGGAT 58.271 39.130 0.00 0.00 0.00 3.41
3910 3958 4.520111 TGCGGAAATGGATAAAGATGGATG 59.480 41.667 0.00 0.00 0.00 3.51
3911 3959 4.520492 GCGGAAATGGATAAAGATGGATGT 59.480 41.667 0.00 0.00 0.00 3.06
3912 3960 5.705441 GCGGAAATGGATAAAGATGGATGTA 59.295 40.000 0.00 0.00 0.00 2.29
3913 3961 6.375455 GCGGAAATGGATAAAGATGGATGTAT 59.625 38.462 0.00 0.00 0.00 2.29
3914 3962 7.414540 GCGGAAATGGATAAAGATGGATGTATC 60.415 40.741 0.00 0.00 0.00 2.24
3915 3963 7.826252 CGGAAATGGATAAAGATGGATGTATCT 59.174 37.037 0.00 0.00 39.03 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
380 398 1.420138 TGGAGGAGGAACCACACTTTC 59.580 52.381 0.00 0.00 42.04 2.62
509 532 3.921677 TCACTGTTGTTATTCTCCCGAC 58.078 45.455 0.00 0.00 0.00 4.79
591 615 3.897681 ATGGAAAACCCCACCCCGC 62.898 63.158 0.00 0.00 39.34 6.13
592 616 0.039911 TAATGGAAAACCCCACCCCG 59.960 55.000 0.00 0.00 39.34 5.73
593 617 2.115427 CATAATGGAAAACCCCACCCC 58.885 52.381 0.00 0.00 39.34 4.95
594 618 2.764010 GTCATAATGGAAAACCCCACCC 59.236 50.000 0.00 0.00 39.34 4.61
595 619 2.425668 CGTCATAATGGAAAACCCCACC 59.574 50.000 0.00 0.00 39.34 4.61
596 620 3.349022 TCGTCATAATGGAAAACCCCAC 58.651 45.455 0.00 0.00 39.34 4.61
597 621 3.722908 TCGTCATAATGGAAAACCCCA 57.277 42.857 0.00 0.00 41.05 4.96
598 622 4.204012 TGATCGTCATAATGGAAAACCCC 58.796 43.478 0.00 0.00 0.00 4.95
599 623 6.208644 CAATGATCGTCATAATGGAAAACCC 58.791 40.000 1.73 0.00 35.76 4.11
600 624 6.183360 ACCAATGATCGTCATAATGGAAAACC 60.183 38.462 17.92 0.00 37.07 3.27
601 625 6.795399 ACCAATGATCGTCATAATGGAAAAC 58.205 36.000 17.92 0.00 37.07 2.43
602 626 6.039270 GGACCAATGATCGTCATAATGGAAAA 59.961 38.462 17.92 0.00 37.07 2.29
603 627 5.530915 GGACCAATGATCGTCATAATGGAAA 59.469 40.000 17.92 0.00 37.07 3.13
604 628 5.063204 GGACCAATGATCGTCATAATGGAA 58.937 41.667 17.92 0.00 37.07 3.53
605 629 4.641396 GGACCAATGATCGTCATAATGGA 58.359 43.478 17.92 0.00 37.07 3.41
606 630 3.433274 CGGACCAATGATCGTCATAATGG 59.567 47.826 12.98 12.98 39.50 3.16
607 631 4.306600 TCGGACCAATGATCGTCATAATG 58.693 43.478 0.00 0.00 35.76 1.90
608 632 4.560128 CTCGGACCAATGATCGTCATAAT 58.440 43.478 0.00 0.00 35.76 1.28
609 633 3.243737 CCTCGGACCAATGATCGTCATAA 60.244 47.826 0.00 0.00 35.76 1.90
610 634 2.296190 CCTCGGACCAATGATCGTCATA 59.704 50.000 0.00 0.00 35.76 2.15
611 635 1.069204 CCTCGGACCAATGATCGTCAT 59.931 52.381 0.00 0.00 39.09 3.06
612 636 0.459899 CCTCGGACCAATGATCGTCA 59.540 55.000 0.00 0.00 0.00 4.35
613 637 0.744874 TCCTCGGACCAATGATCGTC 59.255 55.000 0.00 0.00 0.00 4.20
614 638 0.460311 GTCCTCGGACCAATGATCGT 59.540 55.000 4.73 0.00 39.08 3.73
615 639 0.595053 CGTCCTCGGACCAATGATCG 60.595 60.000 10.34 0.00 41.76 3.69
616 640 3.274393 CGTCCTCGGACCAATGATC 57.726 57.895 10.34 0.00 41.76 2.92
635 659 4.966787 TGGTCAAACCCCGCTGGC 62.967 66.667 0.00 0.00 37.50 4.85
636 660 1.395826 TTTTGGTCAAACCCCGCTGG 61.396 55.000 0.00 0.00 37.50 4.85
637 661 0.461961 TTTTTGGTCAAACCCCGCTG 59.538 50.000 0.00 0.00 37.50 5.18
638 662 0.750249 CTTTTTGGTCAAACCCCGCT 59.250 50.000 0.00 0.00 37.50 5.52
639 663 0.878523 GCTTTTTGGTCAAACCCCGC 60.879 55.000 0.00 0.00 37.50 6.13
640 664 0.750249 AGCTTTTTGGTCAAACCCCG 59.250 50.000 0.00 0.00 37.50 5.73
641 665 1.760029 TCAGCTTTTTGGTCAAACCCC 59.240 47.619 0.00 0.00 37.50 4.95
642 666 2.224042 CCTCAGCTTTTTGGTCAAACCC 60.224 50.000 0.00 0.00 37.50 4.11
643 667 2.224042 CCCTCAGCTTTTTGGTCAAACC 60.224 50.000 0.00 0.00 39.22 3.27
644 668 2.803133 GCCCTCAGCTTTTTGGTCAAAC 60.803 50.000 0.00 0.00 38.99 2.93
645 669 1.412343 GCCCTCAGCTTTTTGGTCAAA 59.588 47.619 0.00 0.00 38.99 2.69
646 670 1.039856 GCCCTCAGCTTTTTGGTCAA 58.960 50.000 0.00 0.00 38.99 3.18
647 671 1.172180 CGCCCTCAGCTTTTTGGTCA 61.172 55.000 0.00 0.00 40.39 4.02
648 672 1.581447 CGCCCTCAGCTTTTTGGTC 59.419 57.895 0.00 0.00 40.39 4.02
649 673 1.903404 CCGCCCTCAGCTTTTTGGT 60.903 57.895 0.00 0.00 40.39 3.67
650 674 2.639327 CCCGCCCTCAGCTTTTTGG 61.639 63.158 0.00 0.00 40.39 3.28
651 675 1.866853 GACCCGCCCTCAGCTTTTTG 61.867 60.000 0.00 0.00 40.39 2.44
652 676 1.603739 GACCCGCCCTCAGCTTTTT 60.604 57.895 0.00 0.00 40.39 1.94
653 677 2.034221 GACCCGCCCTCAGCTTTT 59.966 61.111 0.00 0.00 40.39 2.27
654 678 4.394712 CGACCCGCCCTCAGCTTT 62.395 66.667 0.00 0.00 40.39 3.51
658 682 4.148825 CTTCCGACCCGCCCTCAG 62.149 72.222 0.00 0.00 0.00 3.35
665 689 4.812476 TGCGATGCTTCCGACCCG 62.812 66.667 0.00 0.00 0.00 5.28
666 690 1.376609 AATTGCGATGCTTCCGACCC 61.377 55.000 0.00 0.00 0.00 4.46
667 691 0.028110 GAATTGCGATGCTTCCGACC 59.972 55.000 0.00 0.00 0.00 4.79
668 692 0.726827 TGAATTGCGATGCTTCCGAC 59.273 50.000 0.00 0.00 0.00 4.79
669 693 1.009078 CTGAATTGCGATGCTTCCGA 58.991 50.000 0.00 0.00 0.00 4.55
670 694 0.590732 GCTGAATTGCGATGCTTCCG 60.591 55.000 0.00 0.00 0.00 4.30
671 695 0.248784 GGCTGAATTGCGATGCTTCC 60.249 55.000 0.00 0.00 0.00 3.46
672 696 0.737219 AGGCTGAATTGCGATGCTTC 59.263 50.000 0.00 0.00 0.00 3.86
673 697 1.180029 AAGGCTGAATTGCGATGCTT 58.820 45.000 0.00 0.00 0.00 3.91
674 698 2.042686 TAAGGCTGAATTGCGATGCT 57.957 45.000 0.00 0.00 0.00 3.79
675 699 3.360249 AATAAGGCTGAATTGCGATGC 57.640 42.857 0.00 0.00 0.00 3.91
676 700 5.052172 CGAAAAATAAGGCTGAATTGCGATG 60.052 40.000 0.00 0.00 0.00 3.84
677 701 5.036737 CGAAAAATAAGGCTGAATTGCGAT 58.963 37.500 0.00 0.00 0.00 4.58
678 702 4.083003 ACGAAAAATAAGGCTGAATTGCGA 60.083 37.500 7.86 0.00 0.00 5.10
679 703 4.030529 CACGAAAAATAAGGCTGAATTGCG 59.969 41.667 0.00 0.00 0.00 4.85
680 704 5.160641 TCACGAAAAATAAGGCTGAATTGC 58.839 37.500 0.00 0.00 0.00 3.56
681 705 6.611381 TCTCACGAAAAATAAGGCTGAATTG 58.389 36.000 0.00 0.00 0.00 2.32
682 706 6.817765 TCTCACGAAAAATAAGGCTGAATT 57.182 33.333 0.00 0.00 0.00 2.17
683 707 6.817765 TTCTCACGAAAAATAAGGCTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
684 708 6.429692 TCATTCTCACGAAAAATAAGGCTGAA 59.570 34.615 0.00 0.00 31.91 3.02
685 709 5.937540 TCATTCTCACGAAAAATAAGGCTGA 59.062 36.000 0.00 0.00 31.91 4.26
686 710 6.024049 GTCATTCTCACGAAAAATAAGGCTG 58.976 40.000 0.00 0.00 31.91 4.85
687 711 5.940470 AGTCATTCTCACGAAAAATAAGGCT 59.060 36.000 0.00 0.00 31.91 4.58
688 712 6.183309 AGTCATTCTCACGAAAAATAAGGC 57.817 37.500 0.00 0.00 31.91 4.35
689 713 8.338259 CCATAGTCATTCTCACGAAAAATAAGG 58.662 37.037 0.00 0.00 31.91 2.69
690 714 7.852945 GCCATAGTCATTCTCACGAAAAATAAG 59.147 37.037 0.00 0.00 31.91 1.73
691 715 7.552687 AGCCATAGTCATTCTCACGAAAAATAA 59.447 33.333 0.00 0.00 31.91 1.40
692 716 7.011389 CAGCCATAGTCATTCTCACGAAAAATA 59.989 37.037 0.00 0.00 31.91 1.40
693 717 5.882557 AGCCATAGTCATTCTCACGAAAAAT 59.117 36.000 0.00 0.00 31.91 1.82
694 718 5.122239 CAGCCATAGTCATTCTCACGAAAAA 59.878 40.000 0.00 0.00 31.91 1.94
695 719 4.631377 CAGCCATAGTCATTCTCACGAAAA 59.369 41.667 0.00 0.00 31.91 2.29
696 720 4.183865 CAGCCATAGTCATTCTCACGAAA 58.816 43.478 0.00 0.00 31.91 3.46
697 721 3.430790 CCAGCCATAGTCATTCTCACGAA 60.431 47.826 0.00 0.00 0.00 3.85
698 722 2.101415 CCAGCCATAGTCATTCTCACGA 59.899 50.000 0.00 0.00 0.00 4.35
699 723 2.159043 ACCAGCCATAGTCATTCTCACG 60.159 50.000 0.00 0.00 0.00 4.35
700 724 3.201290 CACCAGCCATAGTCATTCTCAC 58.799 50.000 0.00 0.00 0.00 3.51
701 725 2.171237 CCACCAGCCATAGTCATTCTCA 59.829 50.000 0.00 0.00 0.00 3.27
702 726 2.435805 TCCACCAGCCATAGTCATTCTC 59.564 50.000 0.00 0.00 0.00 2.87
703 727 2.481441 TCCACCAGCCATAGTCATTCT 58.519 47.619 0.00 0.00 0.00 2.40
704 728 3.209410 CTTCCACCAGCCATAGTCATTC 58.791 50.000 0.00 0.00 0.00 2.67
705 729 2.092212 CCTTCCACCAGCCATAGTCATT 60.092 50.000 0.00 0.00 0.00 2.57
706 730 1.492176 CCTTCCACCAGCCATAGTCAT 59.508 52.381 0.00 0.00 0.00 3.06
707 731 0.911769 CCTTCCACCAGCCATAGTCA 59.088 55.000 0.00 0.00 0.00 3.41
708 732 0.912486 ACCTTCCACCAGCCATAGTC 59.088 55.000 0.00 0.00 0.00 2.59
709 733 1.372501 AACCTTCCACCAGCCATAGT 58.627 50.000 0.00 0.00 0.00 2.12
710 734 2.514458 AAACCTTCCACCAGCCATAG 57.486 50.000 0.00 0.00 0.00 2.23
711 735 2.990740 AAAACCTTCCACCAGCCATA 57.009 45.000 0.00 0.00 0.00 2.74
712 736 2.557452 CCTAAAACCTTCCACCAGCCAT 60.557 50.000 0.00 0.00 0.00 4.40
713 737 1.203001 CCTAAAACCTTCCACCAGCCA 60.203 52.381 0.00 0.00 0.00 4.75
714 738 1.545841 CCTAAAACCTTCCACCAGCC 58.454 55.000 0.00 0.00 0.00 4.85
715 739 1.545841 CCCTAAAACCTTCCACCAGC 58.454 55.000 0.00 0.00 0.00 4.85
716 740 1.272480 CCCCCTAAAACCTTCCACCAG 60.272 57.143 0.00 0.00 0.00 4.00
717 741 0.781278 CCCCCTAAAACCTTCCACCA 59.219 55.000 0.00 0.00 0.00 4.17
718 742 3.683885 CCCCCTAAAACCTTCCACC 57.316 57.895 0.00 0.00 0.00 4.61
734 758 2.159179 ACTTCCACAAATATGCCCCC 57.841 50.000 0.00 0.00 0.00 5.40
735 759 6.969993 TTATTACTTCCACAAATATGCCCC 57.030 37.500 0.00 0.00 0.00 5.80
736 760 8.007405 AGTTTATTACTTCCACAAATATGCCC 57.993 34.615 0.00 0.00 31.29 5.36
737 761 9.869757 AAAGTTTATTACTTCCACAAATATGCC 57.130 29.630 0.00 0.00 46.34 4.40
768 792 9.467258 GCATCATCTAGCAGATCTCTTATAATC 57.533 37.037 0.00 0.00 31.32 1.75
769 793 9.204337 AGCATCATCTAGCAGATCTCTTATAAT 57.796 33.333 0.00 0.00 31.32 1.28
770 794 8.592529 AGCATCATCTAGCAGATCTCTTATAA 57.407 34.615 0.00 0.00 31.32 0.98
771 795 8.592529 AAGCATCATCTAGCAGATCTCTTATA 57.407 34.615 0.00 0.00 31.32 0.98
772 796 7.484993 AAGCATCATCTAGCAGATCTCTTAT 57.515 36.000 0.00 0.00 31.32 1.73
773 797 6.914654 AAGCATCATCTAGCAGATCTCTTA 57.085 37.500 0.00 0.00 31.32 2.10
774 798 5.811796 AAGCATCATCTAGCAGATCTCTT 57.188 39.130 0.00 0.00 31.32 2.85
775 799 6.914654 TTAAGCATCATCTAGCAGATCTCT 57.085 37.500 0.00 0.00 31.32 3.10
776 800 6.757947 GGATTAAGCATCATCTAGCAGATCTC 59.242 42.308 0.00 0.00 31.32 2.75
777 801 6.352051 GGGATTAAGCATCATCTAGCAGATCT 60.352 42.308 0.00 0.00 31.32 2.75
778 802 5.816777 GGGATTAAGCATCATCTAGCAGATC 59.183 44.000 0.00 0.00 31.32 2.75
779 803 5.488203 AGGGATTAAGCATCATCTAGCAGAT 59.512 40.000 0.00 0.00 34.74 2.90
780 804 4.842948 AGGGATTAAGCATCATCTAGCAGA 59.157 41.667 0.00 0.00 32.79 4.26
781 805 5.163281 AGGGATTAAGCATCATCTAGCAG 57.837 43.478 0.00 0.00 32.79 4.24
782 806 6.686484 TTAGGGATTAAGCATCATCTAGCA 57.314 37.500 0.00 0.00 32.79 3.49
783 807 7.986085 TTTTAGGGATTAAGCATCATCTAGC 57.014 36.000 0.00 0.00 32.79 3.42
784 808 9.566432 AGTTTTTAGGGATTAAGCATCATCTAG 57.434 33.333 0.00 0.00 32.79 2.43
785 809 9.920946 AAGTTTTTAGGGATTAAGCATCATCTA 57.079 29.630 0.00 0.00 32.79 1.98
786 810 8.829373 AAGTTTTTAGGGATTAAGCATCATCT 57.171 30.769 0.00 0.00 32.79 2.90
787 811 8.138074 GGAAGTTTTTAGGGATTAAGCATCATC 58.862 37.037 0.00 0.00 32.79 2.92
788 812 7.069950 GGGAAGTTTTTAGGGATTAAGCATCAT 59.930 37.037 0.00 0.00 32.79 2.45
789 813 6.379988 GGGAAGTTTTTAGGGATTAAGCATCA 59.620 38.462 0.00 0.00 32.79 3.07
790 814 6.183360 GGGGAAGTTTTTAGGGATTAAGCATC 60.183 42.308 0.00 0.00 0.00 3.91
791 815 5.661312 GGGGAAGTTTTTAGGGATTAAGCAT 59.339 40.000 0.00 0.00 0.00 3.79
792 816 5.020795 GGGGAAGTTTTTAGGGATTAAGCA 58.979 41.667 0.00 0.00 0.00 3.91
793 817 5.269991 AGGGGAAGTTTTTAGGGATTAAGC 58.730 41.667 0.00 0.00 0.00 3.09
794 818 6.490492 TGAGGGGAAGTTTTTAGGGATTAAG 58.510 40.000 0.00 0.00 0.00 1.85
795 819 6.471942 TGAGGGGAAGTTTTTAGGGATTAA 57.528 37.500 0.00 0.00 0.00 1.40
796 820 6.471942 TTGAGGGGAAGTTTTTAGGGATTA 57.528 37.500 0.00 0.00 0.00 1.75
797 821 5.348259 TTGAGGGGAAGTTTTTAGGGATT 57.652 39.130 0.00 0.00 0.00 3.01
798 822 5.348259 TTTGAGGGGAAGTTTTTAGGGAT 57.652 39.130 0.00 0.00 0.00 3.85
799 823 4.817874 TTTGAGGGGAAGTTTTTAGGGA 57.182 40.909 0.00 0.00 0.00 4.20
800 824 6.724441 AGTTATTTGAGGGGAAGTTTTTAGGG 59.276 38.462 0.00 0.00 0.00 3.53
801 825 7.776618 AGTTATTTGAGGGGAAGTTTTTAGG 57.223 36.000 0.00 0.00 0.00 2.69
807 831 8.647796 CCTTAAAAAGTTATTTGAGGGGAAGTT 58.352 33.333 10.72 0.00 40.53 2.66
808 832 8.008332 TCCTTAAAAAGTTATTTGAGGGGAAGT 58.992 33.333 15.10 0.00 42.99 3.01
809 833 8.417273 TCCTTAAAAAGTTATTTGAGGGGAAG 57.583 34.615 15.10 0.00 42.99 3.46
810 834 8.785184 TTCCTTAAAAAGTTATTTGAGGGGAA 57.215 30.769 15.10 0.00 42.99 3.97
811 835 8.785184 TTTCCTTAAAAAGTTATTTGAGGGGA 57.215 30.769 15.10 0.00 42.99 4.81
842 866 8.736244 CCTTCCCTCGAATTTTTATTTAACTCA 58.264 33.333 0.00 0.00 0.00 3.41
915 940 2.907407 TCGGCGAGGCAGATCGAT 60.907 61.111 4.99 0.00 45.56 3.59
916 941 3.889044 GTCGGCGAGGCAGATCGA 61.889 66.667 11.20 0.00 45.56 3.59
1335 1360 1.805945 GAAGTTCGCATCGACGCCT 60.806 57.895 0.00 0.00 34.89 5.52
1368 1393 3.282745 CTCGAGGTCACCGTGGTGG 62.283 68.421 18.47 2.78 45.43 4.61
1377 1402 4.710167 TCCGGCGACTCGAGGTCA 62.710 66.667 18.41 0.00 44.70 4.02
1470 1495 4.840005 TGGCACACAACGACGGCA 62.840 61.111 0.00 0.00 0.00 5.69
1620 1645 0.940126 CATCCATCTGGTTACAGCGC 59.060 55.000 0.00 0.00 44.54 5.92
1749 1774 4.626081 AAGGCGACGTGCTTGGCT 62.626 61.111 0.00 0.00 45.43 4.75
1857 1882 2.507484 CTCTGCTCCCATTTGAACACA 58.493 47.619 0.00 0.00 0.00 3.72
1941 1966 1.469423 GCGTTGGTCAGTAGGTAGAGC 60.469 57.143 0.00 0.00 0.00 4.09
1959 1984 0.109086 CTGTGTCAGAGTGGTAGGCG 60.109 60.000 0.00 0.00 32.44 5.52
2013 2038 0.034767 CTGGCTCCTCAATGCTGGAA 60.035 55.000 0.00 0.00 31.23 3.53
2567 2592 3.343941 ACTCCTACAAAGCGGCAAATA 57.656 42.857 1.45 0.00 0.00 1.40
2574 2599 6.963049 ACTACAAATAACTCCTACAAAGCG 57.037 37.500 0.00 0.00 0.00 4.68
2748 2775 3.088532 TGGGCTAAATGGTCACATTCAC 58.911 45.455 0.00 0.00 46.25 3.18
2784 2811 5.815222 AGTAACAAAAATGGAAGGTGCAAAC 59.185 36.000 0.00 0.00 0.00 2.93
2807 2834 5.106157 CCAACCTAAGCAACCTTGAATGTAG 60.106 44.000 0.00 0.00 32.47 2.74
2865 2892 7.943079 TGTGGATATGAAAAGTGATGAACAT 57.057 32.000 0.00 0.00 0.00 2.71
3033 3060 5.032863 GCATCAACTTCTTCCATGAATTCG 58.967 41.667 0.04 0.00 0.00 3.34
3096 3123 2.226200 TCATTGACTGATGCAACAACGG 59.774 45.455 0.00 0.00 0.00 4.44
3115 3142 7.062749 ACTGTACACCTCTTCTATTGTTTCA 57.937 36.000 0.00 0.00 0.00 2.69
3135 3162 3.009473 AGGTTGATCAAGTGCCATACTGT 59.991 43.478 8.80 0.00 40.26 3.55
3211 3250 4.981389 TTTGTCACACAAAAAGCACAAC 57.019 36.364 0.00 0.00 44.23 3.32
3224 3263 6.145209 CAGTTTCAACAACACAATTTGTCACA 59.855 34.615 0.00 0.00 38.82 3.58
3249 3288 5.979288 TCTACAACCTGACTCTAAACTCC 57.021 43.478 0.00 0.00 0.00 3.85
3274 3313 7.548097 TGTGTTGTGCTGGAAAAGTAAATTAA 58.452 30.769 0.00 0.00 0.00 1.40
3375 3414 7.250569 CAAACCAGTAACAGTTAGCCATTATG 58.749 38.462 0.00 0.00 0.00 1.90
3397 3440 3.304391 GCACGTAATTCAGACTTGGCAAA 60.304 43.478 0.00 0.00 0.00 3.68
3414 3457 2.596904 ACTCACTTACAGTTGCACGT 57.403 45.000 0.00 0.00 0.00 4.49
3416 3459 4.809426 ACAGTAACTCACTTACAGTTGCAC 59.191 41.667 3.93 0.00 38.53 4.57
3417 3460 4.808895 CACAGTAACTCACTTACAGTTGCA 59.191 41.667 3.93 0.00 38.53 4.08
3428 3473 7.724305 TCCTTTTTGTATCACAGTAACTCAC 57.276 36.000 0.00 0.00 0.00 3.51
3465 3511 8.392612 GCTTTGTTGCATGATATAAAAAGCATT 58.607 29.630 13.99 0.00 44.68 3.56
3494 3542 4.068599 TGCGACATAAGGAACAAACATCA 58.931 39.130 0.00 0.00 0.00 3.07
3497 3545 4.130857 TCTTGCGACATAAGGAACAAACA 58.869 39.130 0.00 0.00 0.00 2.83
3507 3555 7.706159 AGCAATTTCAATATCTTGCGACATAA 58.294 30.769 0.00 0.00 46.51 1.90
3509 3557 6.140303 AGCAATTTCAATATCTTGCGACAT 57.860 33.333 0.00 0.00 46.51 3.06
3562 3610 3.837213 CGAAAGGAATGATGTGCAGTT 57.163 42.857 0.00 0.00 0.00 3.16
3584 3632 2.579207 TGCTCGGCTGAACTGTATAC 57.421 50.000 0.00 0.00 0.00 1.47
3606 3654 4.574828 TGGAAGAATATACTTTTCTGCGCC 59.425 41.667 4.18 0.00 33.79 6.53
3642 3690 8.999431 GTCTTAAATTTGTGAACAGATGGAGTA 58.001 33.333 0.00 0.00 0.00 2.59
3643 3691 7.307989 CGTCTTAAATTTGTGAACAGATGGAGT 60.308 37.037 0.00 0.00 0.00 3.85
3646 3694 6.668323 ACGTCTTAAATTTGTGAACAGATGG 58.332 36.000 0.00 0.00 0.00 3.51
3648 3696 8.402472 TGAAACGTCTTAAATTTGTGAACAGAT 58.598 29.630 0.00 0.00 0.00 2.90
3669 3717 9.959749 TGTAGTCCAAACAAAAATATCTGAAAC 57.040 29.630 0.00 0.00 0.00 2.78
3673 3721 9.702726 CGTATGTAGTCCAAACAAAAATATCTG 57.297 33.333 0.00 0.00 0.00 2.90
3674 3722 8.889717 CCGTATGTAGTCCAAACAAAAATATCT 58.110 33.333 0.00 0.00 0.00 1.98
3678 3726 6.713450 AGTCCGTATGTAGTCCAAACAAAAAT 59.287 34.615 0.00 0.00 0.00 1.82
3680 3728 5.467399 CAGTCCGTATGTAGTCCAAACAAAA 59.533 40.000 0.00 0.00 0.00 2.44
3681 3729 4.992319 CAGTCCGTATGTAGTCCAAACAAA 59.008 41.667 0.00 0.00 0.00 2.83
3682 3730 4.281435 TCAGTCCGTATGTAGTCCAAACAA 59.719 41.667 0.00 0.00 0.00 2.83
3683 3731 3.827876 TCAGTCCGTATGTAGTCCAAACA 59.172 43.478 0.00 0.00 0.00 2.83
3684 3732 4.445452 TCAGTCCGTATGTAGTCCAAAC 57.555 45.455 0.00 0.00 0.00 2.93
3685 3733 5.471556 TTTCAGTCCGTATGTAGTCCAAA 57.528 39.130 0.00 0.00 0.00 3.28
3686 3734 5.186215 TCATTTCAGTCCGTATGTAGTCCAA 59.814 40.000 0.00 0.00 0.00 3.53
3687 3735 4.707934 TCATTTCAGTCCGTATGTAGTCCA 59.292 41.667 0.00 0.00 0.00 4.02
3688 3736 5.163540 ACTCATTTCAGTCCGTATGTAGTCC 60.164 44.000 0.00 0.00 0.00 3.85
3690 3738 5.417894 TCACTCATTTCAGTCCGTATGTAGT 59.582 40.000 0.00 0.00 0.00 2.73
3691 3739 5.891451 TCACTCATTTCAGTCCGTATGTAG 58.109 41.667 0.00 0.00 0.00 2.74
3693 3741 4.801330 TCACTCATTTCAGTCCGTATGT 57.199 40.909 0.00 0.00 0.00 2.29
3694 3742 4.929211 TGTTCACTCATTTCAGTCCGTATG 59.071 41.667 0.00 0.00 0.00 2.39
3695 3743 5.147330 TGTTCACTCATTTCAGTCCGTAT 57.853 39.130 0.00 0.00 0.00 3.06
3697 3745 3.469008 TGTTCACTCATTTCAGTCCGT 57.531 42.857 0.00 0.00 0.00 4.69
3698 3746 4.035091 TGTTTGTTCACTCATTTCAGTCCG 59.965 41.667 0.00 0.00 0.00 4.79
3699 3747 5.163663 TGTGTTTGTTCACTCATTTCAGTCC 60.164 40.000 0.00 0.00 38.90 3.85
3700 3748 5.879237 TGTGTTTGTTCACTCATTTCAGTC 58.121 37.500 0.00 0.00 38.90 3.51
3701 3749 5.895636 TGTGTTTGTTCACTCATTTCAGT 57.104 34.783 0.00 0.00 38.90 3.41
3702 3750 8.854979 TTAATGTGTTTGTTCACTCATTTCAG 57.145 30.769 6.47 0.00 40.01 3.02
3703 3751 9.645059 TTTTAATGTGTTTGTTCACTCATTTCA 57.355 25.926 6.47 0.00 40.01 2.69
3704 3752 9.900264 GTTTTAATGTGTTTGTTCACTCATTTC 57.100 29.630 6.47 0.00 40.01 2.17
3705 3753 8.591312 CGTTTTAATGTGTTTGTTCACTCATTT 58.409 29.630 6.47 0.00 40.01 2.32
3706 3754 7.757624 ACGTTTTAATGTGTTTGTTCACTCATT 59.242 29.630 6.42 6.42 41.48 2.57
3707 3755 7.254852 ACGTTTTAATGTGTTTGTTCACTCAT 58.745 30.769 0.00 0.00 38.90 2.90
3708 3756 6.613233 ACGTTTTAATGTGTTTGTTCACTCA 58.387 32.000 0.00 0.00 38.90 3.41
3709 3757 7.500807 AACGTTTTAATGTGTTTGTTCACTC 57.499 32.000 0.00 0.00 38.90 3.51
3710 3758 7.810759 AGAAACGTTTTAATGTGTTTGTTCACT 59.189 29.630 15.89 0.00 38.90 3.41
3711 3759 7.944997 AGAAACGTTTTAATGTGTTTGTTCAC 58.055 30.769 15.89 0.00 34.89 3.18
3712 3760 9.790389 ATAGAAACGTTTTAATGTGTTTGTTCA 57.210 25.926 15.89 0.00 34.89 3.18
3726 3774 9.537192 TGAATCGGATGTATATAGAAACGTTTT 57.463 29.630 15.89 7.85 0.00 2.43
3727 3775 8.975439 GTGAATCGGATGTATATAGAAACGTTT 58.025 33.333 14.57 14.57 0.00 3.60
3728 3776 8.139350 TGTGAATCGGATGTATATAGAAACGTT 58.861 33.333 0.00 0.00 0.00 3.99
3729 3777 7.654568 TGTGAATCGGATGTATATAGAAACGT 58.345 34.615 0.00 0.00 0.00 3.99
3730 3778 8.515473 TTGTGAATCGGATGTATATAGAAACG 57.485 34.615 0.00 1.66 0.00 3.60
3779 3827 9.504708 TCGTTAAAACATATTCCCTCTGTTAAA 57.495 29.630 0.00 0.00 33.01 1.52
3780 3828 9.675464 ATCGTTAAAACATATTCCCTCTGTTAA 57.325 29.630 0.00 0.00 33.01 2.01
3781 3829 9.675464 AATCGTTAAAACATATTCCCTCTGTTA 57.325 29.630 0.00 0.00 33.01 2.41
3782 3830 8.575649 AATCGTTAAAACATATTCCCTCTGTT 57.424 30.769 0.00 0.00 34.71 3.16
3783 3831 8.575649 AAATCGTTAAAACATATTCCCTCTGT 57.424 30.769 0.00 0.00 0.00 3.41
3847 3895 1.137872 GGGAGTACTGACCATGAGCTG 59.862 57.143 0.00 0.00 0.00 4.24
3848 3896 1.007721 AGGGAGTACTGACCATGAGCT 59.992 52.381 13.99 0.00 0.00 4.09
3849 3897 1.410882 GAGGGAGTACTGACCATGAGC 59.589 57.143 13.99 0.00 0.00 4.26
3850 3898 2.035632 GGAGGGAGTACTGACCATGAG 58.964 57.143 13.99 0.00 0.00 2.90
3851 3899 1.685180 CGGAGGGAGTACTGACCATGA 60.685 57.143 13.99 0.00 0.00 3.07
3852 3900 0.747255 CGGAGGGAGTACTGACCATG 59.253 60.000 13.99 0.00 0.00 3.66
3853 3901 0.335361 ACGGAGGGAGTACTGACCAT 59.665 55.000 13.99 2.00 0.00 3.55
3854 3902 0.323178 GACGGAGGGAGTACTGACCA 60.323 60.000 13.99 0.00 0.00 4.02
3855 3903 1.036481 GGACGGAGGGAGTACTGACC 61.036 65.000 0.00 2.07 0.00 4.02
3856 3904 1.375098 CGGACGGAGGGAGTACTGAC 61.375 65.000 0.00 0.00 0.00 3.51
3857 3905 1.077930 CGGACGGAGGGAGTACTGA 60.078 63.158 0.00 0.00 0.00 3.41
3858 3906 2.119655 CCGGACGGAGGGAGTACTG 61.120 68.421 4.40 0.00 37.50 2.74
3859 3907 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
3860 3908 0.754587 ATTCCGGACGGAGGGAGTAC 60.755 60.000 13.64 0.00 46.06 2.73
3861 3909 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3862 3910 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
3863 3911 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3864 3912 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
3865 3913 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3866 3914 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3867 3915 2.667473 ACAAGTAATTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
3868 3916 2.690786 CAACAAGTAATTCCGGACGGA 58.309 47.619 1.83 9.76 43.52 4.69
3869 3917 1.129811 GCAACAAGTAATTCCGGACGG 59.870 52.381 1.83 3.96 0.00 4.79
3870 3918 1.201877 CGCAACAAGTAATTCCGGACG 60.202 52.381 1.83 0.00 0.00 4.79
3871 3919 1.129811 CCGCAACAAGTAATTCCGGAC 59.870 52.381 1.83 0.00 36.55 4.79
3872 3920 1.002201 TCCGCAACAAGTAATTCCGGA 59.998 47.619 0.00 0.00 40.62 5.14
3873 3921 1.444836 TCCGCAACAAGTAATTCCGG 58.555 50.000 0.00 0.00 35.83 5.14
3874 3922 3.546002 TTTCCGCAACAAGTAATTCCG 57.454 42.857 0.00 0.00 0.00 4.30
3875 3923 4.082463 TCCATTTCCGCAACAAGTAATTCC 60.082 41.667 0.00 0.00 0.00 3.01
3876 3924 5.054390 TCCATTTCCGCAACAAGTAATTC 57.946 39.130 0.00 0.00 0.00 2.17
3877 3925 5.659440 ATCCATTTCCGCAACAAGTAATT 57.341 34.783 0.00 0.00 0.00 1.40
3878 3926 6.767524 TTATCCATTTCCGCAACAAGTAAT 57.232 33.333 0.00 0.00 0.00 1.89
3879 3927 6.431543 TCTTTATCCATTTCCGCAACAAGTAA 59.568 34.615 0.00 0.00 0.00 2.24
3880 3928 5.941058 TCTTTATCCATTTCCGCAACAAGTA 59.059 36.000 0.00 0.00 0.00 2.24
3881 3929 4.764823 TCTTTATCCATTTCCGCAACAAGT 59.235 37.500 0.00 0.00 0.00 3.16
3882 3930 5.309323 TCTTTATCCATTTCCGCAACAAG 57.691 39.130 0.00 0.00 0.00 3.16
3883 3931 5.394005 CCATCTTTATCCATTTCCGCAACAA 60.394 40.000 0.00 0.00 0.00 2.83
3884 3932 4.097741 CCATCTTTATCCATTTCCGCAACA 59.902 41.667 0.00 0.00 0.00 3.33
3885 3933 4.338118 TCCATCTTTATCCATTTCCGCAAC 59.662 41.667 0.00 0.00 0.00 4.17
3886 3934 4.531854 TCCATCTTTATCCATTTCCGCAA 58.468 39.130 0.00 0.00 0.00 4.85
3887 3935 4.163441 TCCATCTTTATCCATTTCCGCA 57.837 40.909 0.00 0.00 0.00 5.69
3888 3936 4.520492 ACATCCATCTTTATCCATTTCCGC 59.480 41.667 0.00 0.00 0.00 5.54
3889 3937 7.826252 AGATACATCCATCTTTATCCATTTCCG 59.174 37.037 0.00 0.00 30.93 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.