Multiple sequence alignment - TraesCS5D01G181200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G181200 chr5D 100.000 3688 0 0 1 3688 281527972 281524285 0.000000e+00 6811.0
1 TraesCS5D01G181200 chr5D 89.139 2532 232 34 893 3408 281684418 281681914 0.000000e+00 3112.0
2 TraesCS5D01G181200 chr5D 81.234 778 143 1 1075 1849 348161290 348162067 3.130000e-175 625.0
3 TraesCS5D01G181200 chr5D 78.866 194 30 7 75 257 427372294 427372487 1.800000e-23 121.0
4 TraesCS5D01G181200 chr5B 88.723 2811 264 34 893 3686 319651325 319648551 0.000000e+00 3386.0
5 TraesCS5D01G181200 chr5B 80.977 778 145 1 1075 1849 408345055 408345832 6.770000e-172 614.0
6 TraesCS5D01G181200 chr5A 97.584 1076 20 5 799 1869 368133231 368132157 0.000000e+00 1838.0
7 TraesCS5D01G181200 chr5A 96.087 869 33 1 1988 2856 368132155 368131288 0.000000e+00 1415.0
8 TraesCS5D01G181200 chr5A 90.980 510 44 1 3007 3516 368129303 368128796 0.000000e+00 686.0
9 TraesCS5D01G181200 chr5A 81.043 786 144 3 1068 1849 448291427 448292211 4.050000e-174 621.0
10 TraesCS5D01G181200 chr5A 81.524 525 65 13 244 747 368134893 368134380 1.600000e-108 403.0
11 TraesCS5D01G181200 chr5A 93.443 183 12 0 2838 3020 368131242 368131060 4.690000e-69 272.0
12 TraesCS5D01G181200 chr2D 81.531 601 99 9 3032 3621 195425567 195424968 5.540000e-133 484.0
13 TraesCS5D01G181200 chr2B 80.033 601 110 7 3030 3621 251774176 251773577 1.570000e-118 436.0
14 TraesCS5D01G181200 chr4A 78.593 654 111 20 3044 3675 31784948 31785594 4.430000e-109 405.0
15 TraesCS5D01G181200 chr7D 78.547 578 117 6 3052 3623 363909844 363910420 1.250000e-99 374.0
16 TraesCS5D01G181200 chr7D 78.543 508 97 10 3110 3610 184995811 184996313 1.280000e-84 324.0
17 TraesCS5D01G181200 chr7D 78.539 219 38 5 31 241 142334927 142335144 6.420000e-28 135.0
18 TraesCS5D01G181200 chr7B 78.049 574 119 5 3052 3619 323485396 323485968 4.530000e-94 355.0
19 TraesCS5D01G181200 chr3D 76.804 388 60 22 20 383 330904965 330905346 1.350000e-44 191.0
20 TraesCS5D01G181200 chr4B 79.638 221 33 7 31 242 14648966 14649183 8.250000e-32 148.0
21 TraesCS5D01G181200 chr6D 77.169 219 39 7 31 241 5483529 5483744 2.330000e-22 117.0
22 TraesCS5D01G181200 chr2A 74.419 215 41 10 37 243 703677845 703677637 3.050000e-11 80.5
23 TraesCS5D01G181200 chr1B 94.118 34 2 0 129 162 308636330 308636297 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G181200 chr5D 281524285 281527972 3687 True 6811.0 6811 100.0000 1 3688 1 chr5D.!!$R1 3687
1 TraesCS5D01G181200 chr5D 281681914 281684418 2504 True 3112.0 3112 89.1390 893 3408 1 chr5D.!!$R2 2515
2 TraesCS5D01G181200 chr5D 348161290 348162067 777 False 625.0 625 81.2340 1075 1849 1 chr5D.!!$F1 774
3 TraesCS5D01G181200 chr5B 319648551 319651325 2774 True 3386.0 3386 88.7230 893 3686 1 chr5B.!!$R1 2793
4 TraesCS5D01G181200 chr5B 408345055 408345832 777 False 614.0 614 80.9770 1075 1849 1 chr5B.!!$F1 774
5 TraesCS5D01G181200 chr5A 368128796 368134893 6097 True 922.8 1838 91.9236 244 3516 5 chr5A.!!$R1 3272
6 TraesCS5D01G181200 chr5A 448291427 448292211 784 False 621.0 621 81.0430 1068 1849 1 chr5A.!!$F1 781
7 TraesCS5D01G181200 chr2D 195424968 195425567 599 True 484.0 484 81.5310 3032 3621 1 chr2D.!!$R1 589
8 TraesCS5D01G181200 chr2B 251773577 251774176 599 True 436.0 436 80.0330 3030 3621 1 chr2B.!!$R1 591
9 TraesCS5D01G181200 chr4A 31784948 31785594 646 False 405.0 405 78.5930 3044 3675 1 chr4A.!!$F1 631
10 TraesCS5D01G181200 chr7D 363909844 363910420 576 False 374.0 374 78.5470 3052 3623 1 chr7D.!!$F3 571
11 TraesCS5D01G181200 chr7D 184995811 184996313 502 False 324.0 324 78.5430 3110 3610 1 chr7D.!!$F2 500
12 TraesCS5D01G181200 chr7B 323485396 323485968 572 False 355.0 355 78.0490 3052 3619 1 chr7B.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.034186 TGATGCGGGAGAAAGCCATT 60.034 50.000 0.00 0.0 0.00 3.16 F
126 127 0.034186 ATGCGGGAGAAAGCCATTCA 60.034 50.000 3.03 0.0 40.72 2.57 F
678 697 0.040425 GCGTGCAATGAAACGACCTT 60.040 50.000 12.05 0.0 42.32 3.50 F
879 1999 0.519961 AAAATCGAAGAAACCCGCCG 59.480 50.000 0.00 0.0 43.58 6.46 F
2169 3299 1.599518 ATGTCAAAGGTTCGCGCCA 60.600 52.632 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1636 2762 1.183549 GAGAGCACGGGAAAGAGGTA 58.816 55.000 0.00 0.0 0.00 3.08 R
2108 3238 2.662596 GCCATCGTCCACTCCACA 59.337 61.111 0.00 0.0 0.00 4.17 R
2169 3299 1.302033 CGACCACTTCCTGCAGCTT 60.302 57.895 8.66 0.0 0.00 3.74 R
2193 3323 1.609555 AGATTCGTCGGGATACTGCTC 59.390 52.381 0.00 0.0 45.18 4.26 R
3411 6389 1.523938 GAATCCCCGGAAAGCCTCG 60.524 63.158 0.73 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.818869 CGGATTTACATGATCGATCTATGG 57.181 41.667 26.88 17.44 0.00 2.74
24 25 5.233050 CGGATTTACATGATCGATCTATGGC 59.767 44.000 26.88 16.67 0.00 4.40
25 26 6.344500 GGATTTACATGATCGATCTATGGCT 58.656 40.000 26.88 16.92 0.00 4.75
26 27 6.820656 GGATTTACATGATCGATCTATGGCTT 59.179 38.462 26.88 16.47 0.00 4.35
27 28 7.010923 GGATTTACATGATCGATCTATGGCTTC 59.989 40.741 26.88 20.26 0.00 3.86
28 29 6.596309 TTACATGATCGATCTATGGCTTCT 57.404 37.500 26.88 16.01 0.00 2.85
29 30 4.818642 ACATGATCGATCTATGGCTTCTG 58.181 43.478 26.88 14.73 0.00 3.02
30 31 4.525874 ACATGATCGATCTATGGCTTCTGA 59.474 41.667 26.88 8.70 0.00 3.27
31 32 4.780275 TGATCGATCTATGGCTTCTGAG 57.220 45.455 25.02 0.00 0.00 3.35
32 33 3.509184 TGATCGATCTATGGCTTCTGAGG 59.491 47.826 25.02 0.00 0.00 3.86
33 34 2.242926 TCGATCTATGGCTTCTGAGGG 58.757 52.381 0.00 0.00 0.00 4.30
34 35 1.337635 CGATCTATGGCTTCTGAGGGC 60.338 57.143 6.38 6.38 0.00 5.19
35 36 1.696336 GATCTATGGCTTCTGAGGGCA 59.304 52.381 17.92 17.92 43.10 5.36
37 38 1.696336 TCTATGGCTTCTGAGGGCATC 59.304 52.381 27.71 0.00 46.22 3.91
38 39 1.698532 CTATGGCTTCTGAGGGCATCT 59.301 52.381 27.71 12.42 46.22 2.90
39 40 0.473326 ATGGCTTCTGAGGGCATCTC 59.527 55.000 20.68 0.00 44.74 2.75
40 41 1.148048 GGCTTCTGAGGGCATCTCC 59.852 63.158 8.49 0.00 41.76 3.71
41 42 1.630126 GGCTTCTGAGGGCATCTCCA 61.630 60.000 8.49 0.00 41.76 3.86
42 43 0.254178 GCTTCTGAGGGCATCTCCAA 59.746 55.000 0.00 0.00 41.76 3.53
43 44 2.016096 GCTTCTGAGGGCATCTCCAAC 61.016 57.143 0.00 0.00 41.76 3.77
44 45 0.250234 TTCTGAGGGCATCTCCAACG 59.750 55.000 0.00 0.00 41.76 4.10
45 46 1.817099 CTGAGGGCATCTCCAACGC 60.817 63.158 0.00 0.00 41.76 4.84
46 47 2.268920 GAGGGCATCTCCAACGCA 59.731 61.111 0.00 0.00 36.52 5.24
47 48 1.817099 GAGGGCATCTCCAACGCAG 60.817 63.158 0.00 0.00 36.52 5.18
48 49 2.244117 GAGGGCATCTCCAACGCAGA 62.244 60.000 0.00 0.00 36.52 4.26
49 50 2.109126 GGGCATCTCCAACGCAGAC 61.109 63.158 0.00 0.00 36.21 3.51
50 51 2.109126 GGCATCTCCAACGCAGACC 61.109 63.158 0.00 0.00 34.01 3.85
51 52 2.109126 GCATCTCCAACGCAGACCC 61.109 63.158 0.00 0.00 0.00 4.46
52 53 1.811266 CATCTCCAACGCAGACCCG 60.811 63.158 0.00 0.00 0.00 5.28
53 54 3.665675 ATCTCCAACGCAGACCCGC 62.666 63.158 0.00 0.00 0.00 6.13
54 55 4.680237 CTCCAACGCAGACCCGCA 62.680 66.667 0.00 0.00 0.00 5.69
55 56 4.243008 TCCAACGCAGACCCGCAA 62.243 61.111 0.00 0.00 0.00 4.85
56 57 3.283684 CCAACGCAGACCCGCAAA 61.284 61.111 0.00 0.00 0.00 3.68
57 58 2.625823 CCAACGCAGACCCGCAAAT 61.626 57.895 0.00 0.00 0.00 2.32
58 59 1.302383 CCAACGCAGACCCGCAAATA 61.302 55.000 0.00 0.00 0.00 1.40
59 60 0.179200 CAACGCAGACCCGCAAATAC 60.179 55.000 0.00 0.00 0.00 1.89
60 61 1.303091 AACGCAGACCCGCAAATACC 61.303 55.000 0.00 0.00 0.00 2.73
61 62 1.449601 CGCAGACCCGCAAATACCT 60.450 57.895 0.00 0.00 0.00 3.08
62 63 1.024579 CGCAGACCCGCAAATACCTT 61.025 55.000 0.00 0.00 0.00 3.50
63 64 0.733150 GCAGACCCGCAAATACCTTC 59.267 55.000 0.00 0.00 0.00 3.46
64 65 1.006832 CAGACCCGCAAATACCTTCG 58.993 55.000 0.00 0.00 0.00 3.79
65 66 0.107848 AGACCCGCAAATACCTTCGG 60.108 55.000 0.00 0.00 41.41 4.30
66 67 0.392060 GACCCGCAAATACCTTCGGT 60.392 55.000 0.00 0.00 40.23 4.69
67 68 0.903942 ACCCGCAAATACCTTCGGTA 59.096 50.000 0.00 0.00 42.80 4.02
68 69 1.278699 ACCCGCAAATACCTTCGGTAA 59.721 47.619 0.00 0.00 41.85 2.85
69 70 2.290197 ACCCGCAAATACCTTCGGTAAA 60.290 45.455 0.00 0.00 41.85 2.01
70 71 2.946990 CCCGCAAATACCTTCGGTAAAT 59.053 45.455 0.00 0.00 41.85 1.40
71 72 3.242936 CCCGCAAATACCTTCGGTAAATG 60.243 47.826 0.00 1.36 41.85 2.32
72 73 3.375922 CCGCAAATACCTTCGGTAAATGT 59.624 43.478 0.00 0.00 41.85 2.71
73 74 4.495184 CCGCAAATACCTTCGGTAAATGTC 60.495 45.833 0.00 0.00 41.85 3.06
74 75 4.495184 CGCAAATACCTTCGGTAAATGTCC 60.495 45.833 0.00 0.00 41.85 4.02
76 77 4.476628 AATACCTTCGGTAAATGTCCGT 57.523 40.909 4.36 0.00 46.86 4.69
77 78 2.845363 ACCTTCGGTAAATGTCCGTT 57.155 45.000 4.36 0.00 46.86 4.44
78 79 3.130280 ACCTTCGGTAAATGTCCGTTT 57.870 42.857 4.36 0.00 46.86 3.60
79 80 3.479489 ACCTTCGGTAAATGTCCGTTTT 58.521 40.909 4.36 0.00 46.86 2.43
80 81 3.884693 ACCTTCGGTAAATGTCCGTTTTT 59.115 39.130 4.36 0.00 46.86 1.94
81 82 5.062528 ACCTTCGGTAAATGTCCGTTTTTA 58.937 37.500 4.36 0.00 46.86 1.52
82 83 5.706833 ACCTTCGGTAAATGTCCGTTTTTAT 59.293 36.000 4.36 0.00 46.86 1.40
83 84 6.207221 ACCTTCGGTAAATGTCCGTTTTTATT 59.793 34.615 4.36 0.00 46.86 1.40
84 85 6.744082 CCTTCGGTAAATGTCCGTTTTTATTC 59.256 38.462 4.36 0.00 46.86 1.75
85 86 6.180771 TCGGTAAATGTCCGTTTTTATTCC 57.819 37.500 4.36 0.00 46.86 3.01
86 87 5.123661 TCGGTAAATGTCCGTTTTTATTCCC 59.876 40.000 4.36 0.00 46.86 3.97
87 88 5.334319 GGTAAATGTCCGTTTTTATTCCCG 58.666 41.667 0.00 0.00 0.00 5.14
88 89 4.443913 AAATGTCCGTTTTTATTCCCGG 57.556 40.909 0.00 0.00 41.75 5.73
89 90 2.855209 TGTCCGTTTTTATTCCCGGA 57.145 45.000 0.73 0.00 46.44 5.14
91 92 1.724429 TCCGTTTTTATTCCCGGACG 58.276 50.000 0.73 1.15 43.99 4.79
92 93 1.001860 TCCGTTTTTATTCCCGGACGT 59.998 47.619 0.73 0.00 43.99 4.34
93 94 1.129064 CCGTTTTTATTCCCGGACGTG 59.871 52.381 0.73 0.00 43.01 4.49
94 95 1.129064 CGTTTTTATTCCCGGACGTGG 59.871 52.381 0.73 0.00 0.00 4.94
95 96 2.153645 GTTTTTATTCCCGGACGTGGT 58.846 47.619 0.73 0.00 0.00 4.16
96 97 2.097680 TTTTATTCCCGGACGTGGTC 57.902 50.000 0.73 0.00 0.00 4.02
115 116 2.969238 GCGGACATGATGCGGGAG 60.969 66.667 0.00 0.00 43.46 4.30
116 117 2.814604 CGGACATGATGCGGGAGA 59.185 61.111 0.00 0.00 38.73 3.71
117 118 1.143838 CGGACATGATGCGGGAGAA 59.856 57.895 0.00 0.00 38.73 2.87
118 119 0.461870 CGGACATGATGCGGGAGAAA 60.462 55.000 0.00 0.00 38.73 2.52
119 120 1.303309 GGACATGATGCGGGAGAAAG 58.697 55.000 0.00 0.00 0.00 2.62
120 121 0.659957 GACATGATGCGGGAGAAAGC 59.340 55.000 0.00 0.00 0.00 3.51
121 122 0.749454 ACATGATGCGGGAGAAAGCC 60.749 55.000 0.00 0.00 0.00 4.35
122 123 0.749091 CATGATGCGGGAGAAAGCCA 60.749 55.000 0.00 0.00 0.00 4.75
123 124 0.184451 ATGATGCGGGAGAAAGCCAT 59.816 50.000 0.00 0.00 0.00 4.40
124 125 0.034186 TGATGCGGGAGAAAGCCATT 60.034 50.000 0.00 0.00 0.00 3.16
125 126 0.665298 GATGCGGGAGAAAGCCATTC 59.335 55.000 0.00 0.00 38.39 2.67
126 127 0.034186 ATGCGGGAGAAAGCCATTCA 60.034 50.000 3.03 0.00 40.72 2.57
127 128 0.251121 TGCGGGAGAAAGCCATTCAA 60.251 50.000 3.03 0.00 40.72 2.69
128 129 1.106285 GCGGGAGAAAGCCATTCAAT 58.894 50.000 3.03 0.00 40.72 2.57
129 130 1.202336 GCGGGAGAAAGCCATTCAATG 60.202 52.381 3.03 0.00 40.72 2.82
141 142 2.618241 CCATTCAATGGTGTGGTATCCG 59.382 50.000 8.44 0.00 45.54 4.18
142 143 2.411628 TTCAATGGTGTGGTATCCGG 57.588 50.000 0.00 0.00 0.00 5.14
143 144 1.281419 TCAATGGTGTGGTATCCGGT 58.719 50.000 0.00 0.00 0.00 5.28
144 145 1.631388 TCAATGGTGTGGTATCCGGTT 59.369 47.619 0.00 0.00 0.00 4.44
145 146 1.742831 CAATGGTGTGGTATCCGGTTG 59.257 52.381 0.00 0.00 0.00 3.77
146 147 0.254747 ATGGTGTGGTATCCGGTTGG 59.745 55.000 0.00 0.00 0.00 3.77
147 148 1.078001 GGTGTGGTATCCGGTTGGG 60.078 63.158 0.00 0.00 35.24 4.12
155 156 3.187313 TCCGGTTGGGAGGAGAGA 58.813 61.111 0.00 0.00 40.94 3.10
156 157 1.467886 TCCGGTTGGGAGGAGAGAA 59.532 57.895 0.00 0.00 40.94 2.87
157 158 0.178915 TCCGGTTGGGAGGAGAGAAA 60.179 55.000 0.00 0.00 40.94 2.52
158 159 0.250513 CCGGTTGGGAGGAGAGAAAG 59.749 60.000 0.00 0.00 38.47 2.62
159 160 0.977395 CGGTTGGGAGGAGAGAAAGT 59.023 55.000 0.00 0.00 0.00 2.66
160 161 2.176889 CGGTTGGGAGGAGAGAAAGTA 58.823 52.381 0.00 0.00 0.00 2.24
161 162 2.166664 CGGTTGGGAGGAGAGAAAGTAG 59.833 54.545 0.00 0.00 0.00 2.57
162 163 2.502130 GGTTGGGAGGAGAGAAAGTAGG 59.498 54.545 0.00 0.00 0.00 3.18
163 164 3.174779 GTTGGGAGGAGAGAAAGTAGGT 58.825 50.000 0.00 0.00 0.00 3.08
164 165 2.821437 TGGGAGGAGAGAAAGTAGGTG 58.179 52.381 0.00 0.00 0.00 4.00
165 166 2.382305 TGGGAGGAGAGAAAGTAGGTGA 59.618 50.000 0.00 0.00 0.00 4.02
166 167 3.028130 GGGAGGAGAGAAAGTAGGTGAG 58.972 54.545 0.00 0.00 0.00 3.51
167 168 3.309265 GGGAGGAGAGAAAGTAGGTGAGA 60.309 52.174 0.00 0.00 0.00 3.27
168 169 3.697542 GGAGGAGAGAAAGTAGGTGAGAC 59.302 52.174 0.00 0.00 0.00 3.36
169 170 3.697542 GAGGAGAGAAAGTAGGTGAGACC 59.302 52.174 0.00 0.00 38.99 3.85
170 171 3.076182 AGGAGAGAAAGTAGGTGAGACCA 59.924 47.826 0.00 0.00 41.95 4.02
171 172 4.027437 GGAGAGAAAGTAGGTGAGACCAT 58.973 47.826 0.00 0.00 41.95 3.55
172 173 4.142049 GGAGAGAAAGTAGGTGAGACCATG 60.142 50.000 0.00 0.00 41.95 3.66
173 174 3.196685 AGAGAAAGTAGGTGAGACCATGC 59.803 47.826 0.00 0.00 41.95 4.06
174 175 2.906389 AGAAAGTAGGTGAGACCATGCA 59.094 45.455 0.00 0.00 41.95 3.96
175 176 3.521126 AGAAAGTAGGTGAGACCATGCAT 59.479 43.478 0.00 0.00 41.95 3.96
176 177 2.996249 AGTAGGTGAGACCATGCATG 57.004 50.000 20.19 20.19 41.95 4.06
177 178 2.191400 AGTAGGTGAGACCATGCATGT 58.809 47.619 24.58 13.09 41.95 3.21
178 179 2.169352 AGTAGGTGAGACCATGCATGTC 59.831 50.000 24.58 20.07 41.95 3.06
179 180 0.107993 AGGTGAGACCATGCATGTCG 60.108 55.000 24.58 13.14 41.95 4.35
180 181 0.391661 GGTGAGACCATGCATGTCGT 60.392 55.000 24.58 16.30 38.42 4.34
181 182 0.723414 GTGAGACCATGCATGTCGTG 59.277 55.000 24.58 12.07 0.00 4.35
185 186 4.565360 CCATGCATGTCGTGGGAT 57.435 55.556 24.58 0.00 46.05 3.85
186 187 3.704100 CCATGCATGTCGTGGGATA 57.296 52.632 24.58 0.00 46.05 2.59
187 188 2.189594 CCATGCATGTCGTGGGATAT 57.810 50.000 24.58 0.00 46.05 1.63
188 189 2.507484 CCATGCATGTCGTGGGATATT 58.493 47.619 24.58 0.00 46.05 1.28
189 190 3.673902 CCATGCATGTCGTGGGATATTA 58.326 45.455 24.58 0.00 46.05 0.98
190 191 4.264253 CCATGCATGTCGTGGGATATTAT 58.736 43.478 24.58 0.00 46.05 1.28
191 192 4.095334 CCATGCATGTCGTGGGATATTATG 59.905 45.833 24.58 0.22 46.05 1.90
192 193 3.673902 TGCATGTCGTGGGATATTATGG 58.326 45.455 0.00 0.00 0.00 2.74
193 194 3.072330 TGCATGTCGTGGGATATTATGGT 59.928 43.478 0.00 0.00 0.00 3.55
194 195 4.284746 TGCATGTCGTGGGATATTATGGTA 59.715 41.667 0.00 0.00 0.00 3.25
195 196 5.045942 TGCATGTCGTGGGATATTATGGTAT 60.046 40.000 0.00 0.00 0.00 2.73
196 197 5.294306 GCATGTCGTGGGATATTATGGTATG 59.706 44.000 0.00 0.00 0.00 2.39
197 198 5.414789 TGTCGTGGGATATTATGGTATGG 57.585 43.478 0.00 0.00 0.00 2.74
198 199 4.841813 TGTCGTGGGATATTATGGTATGGT 59.158 41.667 0.00 0.00 0.00 3.55
199 200 5.175859 GTCGTGGGATATTATGGTATGGTG 58.824 45.833 0.00 0.00 0.00 4.17
200 201 4.841813 TCGTGGGATATTATGGTATGGTGT 59.158 41.667 0.00 0.00 0.00 4.16
201 202 5.308497 TCGTGGGATATTATGGTATGGTGTT 59.692 40.000 0.00 0.00 0.00 3.32
202 203 5.642063 CGTGGGATATTATGGTATGGTGTTC 59.358 44.000 0.00 0.00 0.00 3.18
203 204 5.642063 GTGGGATATTATGGTATGGTGTTCG 59.358 44.000 0.00 0.00 0.00 3.95
204 205 5.183228 GGGATATTATGGTATGGTGTTCGG 58.817 45.833 0.00 0.00 0.00 4.30
205 206 5.280317 GGGATATTATGGTATGGTGTTCGGT 60.280 44.000 0.00 0.00 0.00 4.69
206 207 6.235664 GGATATTATGGTATGGTGTTCGGTT 58.764 40.000 0.00 0.00 0.00 4.44
207 208 6.148811 GGATATTATGGTATGGTGTTCGGTTG 59.851 42.308 0.00 0.00 0.00 3.77
208 209 4.554960 TTATGGTATGGTGTTCGGTTGA 57.445 40.909 0.00 0.00 0.00 3.18
209 210 2.465860 TGGTATGGTGTTCGGTTGAG 57.534 50.000 0.00 0.00 0.00 3.02
210 211 1.972075 TGGTATGGTGTTCGGTTGAGA 59.028 47.619 0.00 0.00 0.00 3.27
211 212 2.569853 TGGTATGGTGTTCGGTTGAGAT 59.430 45.455 0.00 0.00 0.00 2.75
212 213 2.936498 GGTATGGTGTTCGGTTGAGATG 59.064 50.000 0.00 0.00 0.00 2.90
213 214 3.369052 GGTATGGTGTTCGGTTGAGATGA 60.369 47.826 0.00 0.00 0.00 2.92
214 215 2.455674 TGGTGTTCGGTTGAGATGAG 57.544 50.000 0.00 0.00 0.00 2.90
215 216 1.967779 TGGTGTTCGGTTGAGATGAGA 59.032 47.619 0.00 0.00 0.00 3.27
216 217 2.029020 TGGTGTTCGGTTGAGATGAGAG 60.029 50.000 0.00 0.00 0.00 3.20
217 218 2.231478 GGTGTTCGGTTGAGATGAGAGA 59.769 50.000 0.00 0.00 0.00 3.10
218 219 3.506810 GTGTTCGGTTGAGATGAGAGAG 58.493 50.000 0.00 0.00 0.00 3.20
219 220 3.191581 GTGTTCGGTTGAGATGAGAGAGA 59.808 47.826 0.00 0.00 0.00 3.10
220 221 3.441922 TGTTCGGTTGAGATGAGAGAGAG 59.558 47.826 0.00 0.00 0.00 3.20
221 222 2.649190 TCGGTTGAGATGAGAGAGAGG 58.351 52.381 0.00 0.00 0.00 3.69
222 223 2.239907 TCGGTTGAGATGAGAGAGAGGA 59.760 50.000 0.00 0.00 0.00 3.71
223 224 2.618241 CGGTTGAGATGAGAGAGAGGAG 59.382 54.545 0.00 0.00 0.00 3.69
224 225 3.684130 CGGTTGAGATGAGAGAGAGGAGA 60.684 52.174 0.00 0.00 0.00 3.71
225 226 3.885297 GGTTGAGATGAGAGAGAGGAGAG 59.115 52.174 0.00 0.00 0.00 3.20
226 227 3.862877 TGAGATGAGAGAGAGGAGAGG 57.137 52.381 0.00 0.00 0.00 3.69
227 228 2.442878 TGAGATGAGAGAGAGGAGAGGG 59.557 54.545 0.00 0.00 0.00 4.30
228 229 1.145738 AGATGAGAGAGAGGAGAGGGC 59.854 57.143 0.00 0.00 0.00 5.19
229 230 0.178992 ATGAGAGAGAGGAGAGGGCG 60.179 60.000 0.00 0.00 0.00 6.13
230 231 1.275421 TGAGAGAGAGGAGAGGGCGA 61.275 60.000 0.00 0.00 0.00 5.54
231 232 0.818040 GAGAGAGAGGAGAGGGCGAC 60.818 65.000 0.00 0.00 0.00 5.19
255 256 3.743567 GCATGTGCAGAAAGAGAAGAG 57.256 47.619 0.00 0.00 41.59 2.85
258 259 3.674528 TGTGCAGAAAGAGAAGAGAGG 57.325 47.619 0.00 0.00 0.00 3.69
263 264 3.131046 GCAGAAAGAGAAGAGAGGAGGAG 59.869 52.174 0.00 0.00 0.00 3.69
269 270 1.203112 AGAAGAGAGGAGGAGCACACA 60.203 52.381 0.00 0.00 0.00 3.72
275 276 0.114168 AGGAGGAGCACACAGAGTCT 59.886 55.000 0.00 0.00 0.00 3.24
284 285 2.682856 GCACACAGAGTCTTTTGGTTGA 59.317 45.455 0.00 0.00 0.00 3.18
288 289 5.240183 CACACAGAGTCTTTTGGTTGATCAT 59.760 40.000 0.00 0.00 0.00 2.45
292 293 4.763793 AGAGTCTTTTGGTTGATCATGTGG 59.236 41.667 0.00 0.00 0.00 4.17
301 302 3.470709 GTTGATCATGTGGATGTCCGAT 58.529 45.455 0.00 0.00 36.00 4.18
330 331 8.943002 CCGGTATAGTTTTTCTACATTTGTCTT 58.057 33.333 0.00 0.00 0.00 3.01
341 342 9.672086 TTTCTACATTTGTCTTTATTTTGTCGG 57.328 29.630 0.00 0.00 0.00 4.79
346 347 8.813282 ACATTTGTCTTTATTTTGTCGGAAAAC 58.187 29.630 0.00 0.00 0.00 2.43
353 354 1.367659 TTTGTCGGAAAACGGACGTT 58.632 45.000 3.99 3.99 44.45 3.99
355 356 1.208009 TGTCGGAAAACGGACGTTCG 61.208 55.000 16.31 16.31 44.45 3.95
357 358 1.661197 CGGAAAACGGACGTTCGGA 60.661 57.895 22.31 0.00 37.35 4.55
364 365 1.731969 CGGACGTTCGGACCACTTC 60.732 63.158 8.83 0.00 0.00 3.01
368 369 3.110178 GTTCGGACCACTTCGCGG 61.110 66.667 6.13 0.00 0.00 6.46
370 371 3.562779 TTCGGACCACTTCGCGGAC 62.563 63.158 6.13 0.00 0.00 4.79
377 378 1.737735 CACTTCGCGGACTGATGCA 60.738 57.895 6.13 0.00 0.00 3.96
380 381 4.819761 TCGCGGACTGATGCAGGC 62.820 66.667 6.13 0.00 39.10 4.85
403 421 5.615984 GCCAATTACAAAAGTGTTCGATCGA 60.616 40.000 15.15 15.15 39.30 3.59
430 448 2.118403 TTGGAGGTTTGAGGGTCTCT 57.882 50.000 0.00 0.00 0.00 3.10
434 452 2.027653 GGAGGTTTGAGGGTCTCTCTTG 60.028 54.545 0.40 0.00 42.86 3.02
435 453 2.900546 GAGGTTTGAGGGTCTCTCTTGA 59.099 50.000 0.40 0.00 42.86 3.02
440 458 4.815533 TTGAGGGTCTCTCTTGAAGATG 57.184 45.455 0.40 0.00 42.86 2.90
447 465 4.080863 GGTCTCTCTTGAAGATGCCCTAAA 60.081 45.833 0.00 0.00 32.19 1.85
448 466 4.873259 GTCTCTCTTGAAGATGCCCTAAAC 59.127 45.833 0.00 0.00 32.19 2.01
454 472 7.942341 TCTCTTGAAGATGCCCTAAACTTTTTA 59.058 33.333 0.00 0.00 0.00 1.52
458 476 7.096551 TGAAGATGCCCTAAACTTTTTAATGC 58.903 34.615 0.00 0.00 0.00 3.56
472 490 6.198966 ACTTTTTAATGCAGAAAACTCGCTTG 59.801 34.615 8.42 0.00 0.00 4.01
485 503 1.470098 CTCGCTTGACCATCAAAAGGG 59.530 52.381 0.00 0.00 35.73 3.95
490 508 3.761897 CTTGACCATCAAAAGGGTACCA 58.238 45.455 15.35 0.00 44.11 3.25
519 537 9.994432 CTTTATTTCTCTAACAACATTGGCTAG 57.006 33.333 0.00 0.00 0.00 3.42
522 540 8.814038 ATTTCTCTAACAACATTGGCTAGATT 57.186 30.769 0.00 0.00 30.98 2.40
523 541 7.615582 TTCTCTAACAACATTGGCTAGATTG 57.384 36.000 0.00 0.00 30.98 2.67
524 542 6.115446 TCTCTAACAACATTGGCTAGATTGG 58.885 40.000 0.00 0.00 30.98 3.16
525 543 3.874392 AACAACATTGGCTAGATTGGC 57.126 42.857 0.00 0.00 0.00 4.52
526 544 3.091633 ACAACATTGGCTAGATTGGCT 57.908 42.857 0.00 0.00 0.00 4.75
527 545 4.235079 ACAACATTGGCTAGATTGGCTA 57.765 40.909 0.00 0.00 0.00 3.93
542 560 2.191400 TGGCTAGATGACTTTGGCTCT 58.809 47.619 0.00 0.00 0.00 4.09
574 592 4.201822 GGCTCCTTTAACACGATCATTGTC 60.202 45.833 0.00 0.00 0.00 3.18
584 602 2.196749 CGATCATTGTCCGAGTCCTTG 58.803 52.381 0.00 0.00 0.00 3.61
587 605 3.040147 TCATTGTCCGAGTCCTTGTTC 57.960 47.619 0.00 0.00 0.00 3.18
588 606 2.076863 CATTGTCCGAGTCCTTGTTCC 58.923 52.381 0.00 0.00 0.00 3.62
599 617 3.636764 AGTCCTTGTTCCGCAATTTCTTT 59.363 39.130 0.00 0.00 36.36 2.52
601 619 4.808895 GTCCTTGTTCCGCAATTTCTTTTT 59.191 37.500 0.00 0.00 36.36 1.94
625 643 1.109296 GCTAACGTGCAACACAAACG 58.891 50.000 0.00 0.00 42.82 3.60
627 645 2.624766 CTAACGTGCAACACAAACGAG 58.375 47.619 0.97 0.00 39.64 4.18
657 676 3.597377 AAAAGGACGACTACAAAACGC 57.403 42.857 0.00 0.00 0.00 4.84
660 679 0.163146 GGACGACTACAAAACGCTGC 59.837 55.000 0.00 0.00 0.00 5.25
678 697 0.040425 GCGTGCAATGAAACGACCTT 60.040 50.000 12.05 0.00 42.32 3.50
682 701 2.032377 GTGCAATGAAACGACCTTCGAA 60.032 45.455 1.94 0.00 43.74 3.71
705 724 4.533919 AAATCAATGCGGGATTTTGTGA 57.466 36.364 0.00 0.00 40.98 3.58
706 725 3.508744 ATCAATGCGGGATTTTGTGAC 57.491 42.857 0.00 0.00 0.00 3.67
707 726 2.513753 TCAATGCGGGATTTTGTGACT 58.486 42.857 0.00 0.00 0.00 3.41
709 728 4.075682 TCAATGCGGGATTTTGTGACTTA 58.924 39.130 0.00 0.00 0.00 2.24
717 739 4.340617 GGATTTTGTGACTTATGGGTGGA 58.659 43.478 0.00 0.00 0.00 4.02
724 746 8.514330 TTTGTGACTTATGGGTGGATAATTAC 57.486 34.615 0.00 0.00 0.00 1.89
747 769 2.920524 TCAACTTCGGGTGCAACTAAA 58.079 42.857 0.00 0.00 36.74 1.85
748 770 3.482436 TCAACTTCGGGTGCAACTAAAT 58.518 40.909 0.00 0.00 36.74 1.40
750 772 3.134574 ACTTCGGGTGCAACTAAATGA 57.865 42.857 0.00 0.00 36.74 2.57
751 773 2.812011 ACTTCGGGTGCAACTAAATGAC 59.188 45.455 0.00 0.00 36.74 3.06
752 774 1.816074 TCGGGTGCAACTAAATGACC 58.184 50.000 0.00 0.00 36.74 4.02
753 775 1.349688 TCGGGTGCAACTAAATGACCT 59.650 47.619 0.00 0.00 36.74 3.85
754 776 2.568062 TCGGGTGCAACTAAATGACCTA 59.432 45.455 0.00 0.00 36.74 3.08
756 778 2.676342 GGGTGCAACTAAATGACCTACG 59.324 50.000 0.00 0.00 36.74 3.51
759 781 4.453136 GGTGCAACTAAATGACCTACGAAA 59.547 41.667 0.00 0.00 36.74 3.46
784 806 9.581099 AAAAACGAATGAGTATTTTTGTGACTT 57.419 25.926 0.00 0.00 33.99 3.01
786 808 9.659830 AAACGAATGAGTATTTTTGTGACTTAC 57.340 29.630 0.00 0.00 0.00 2.34
791 1910 7.402811 TGAGTATTTTTGTGACTTACGACTG 57.597 36.000 0.00 0.00 0.00 3.51
792 1911 7.204604 TGAGTATTTTTGTGACTTACGACTGA 58.795 34.615 0.00 0.00 0.00 3.41
795 1914 6.861065 ATTTTTGTGACTTACGACTGACAT 57.139 33.333 0.00 0.00 0.00 3.06
797 1916 4.316205 TTGTGACTTACGACTGACATGT 57.684 40.909 0.00 0.00 0.00 3.21
809 1928 5.175859 CGACTGACATGTTGGGTAATTACT 58.824 41.667 15.05 0.00 0.00 2.24
879 1999 0.519961 AAAATCGAAGAAACCCGCCG 59.480 50.000 0.00 0.00 43.58 6.46
1002 2123 3.457234 TGGAAGCTTCGTACATGCTATG 58.543 45.455 19.91 0.00 34.39 2.23
1159 2282 4.176752 CCCTTACCAGGCTCGCCC 62.177 72.222 3.92 0.00 39.20 6.13
1748 2874 4.166523 CCGATTATTGAGCGTCGTATGAT 58.833 43.478 0.00 0.00 34.82 2.45
1867 2994 5.924356 TGGTATGTTTGACTCTGAACTGAA 58.076 37.500 0.00 0.00 0.00 3.02
1868 2995 5.991606 TGGTATGTTTGACTCTGAACTGAAG 59.008 40.000 0.00 0.00 0.00 3.02
1874 3001 6.127451 TGTTTGACTCTGAACTGAAGTGAGTA 60.127 38.462 2.83 0.00 38.00 2.59
1875 3002 5.440234 TGACTCTGAACTGAAGTGAGTAC 57.560 43.478 2.83 0.00 38.00 2.73
1876 3003 4.887655 TGACTCTGAACTGAAGTGAGTACA 59.112 41.667 0.00 1.92 38.00 2.90
1878 3005 5.777802 ACTCTGAACTGAAGTGAGTACATG 58.222 41.667 0.00 0.00 36.39 3.21
1879 3006 5.303078 ACTCTGAACTGAAGTGAGTACATGT 59.697 40.000 2.69 2.69 36.39 3.21
1881 3008 6.216569 TCTGAACTGAAGTGAGTACATGTTC 58.783 40.000 2.30 0.00 34.82 3.18
1882 3009 5.912892 TGAACTGAAGTGAGTACATGTTCA 58.087 37.500 2.30 0.00 39.73 3.18
1884 3011 6.992123 TGAACTGAAGTGAGTACATGTTCATT 59.008 34.615 2.30 0.00 37.97 2.57
1885 3012 7.171508 TGAACTGAAGTGAGTACATGTTCATTC 59.828 37.037 2.30 9.10 37.97 2.67
1886 3013 5.934625 ACTGAAGTGAGTACATGTTCATTCC 59.065 40.000 2.30 0.00 34.06 3.01
1887 3014 5.863965 TGAAGTGAGTACATGTTCATTCCA 58.136 37.500 2.30 0.00 31.50 3.53
1888 3015 6.295249 TGAAGTGAGTACATGTTCATTCCAA 58.705 36.000 2.30 0.00 31.50 3.53
1889 3016 6.204688 TGAAGTGAGTACATGTTCATTCCAAC 59.795 38.462 2.30 0.00 31.50 3.77
1890 3017 5.869579 AGTGAGTACATGTTCATTCCAACT 58.130 37.500 2.30 0.00 0.00 3.16
1891 3018 6.299141 AGTGAGTACATGTTCATTCCAACTT 58.701 36.000 2.30 0.00 0.00 2.66
1892 3019 6.205464 AGTGAGTACATGTTCATTCCAACTTG 59.795 38.462 2.30 0.00 37.42 3.16
1893 3020 5.473162 TGAGTACATGTTCATTCCAACTTGG 59.527 40.000 2.30 0.74 36.30 3.61
1894 3021 4.766891 AGTACATGTTCATTCCAACTTGGG 59.233 41.667 2.30 0.00 38.32 4.12
1895 3022 3.843422 ACATGTTCATTCCAACTTGGGA 58.157 40.909 8.01 0.00 38.32 4.37
1907 3034 7.906199 TTCCAACTTGGGAAAGAAAATCTAA 57.094 32.000 8.01 0.00 43.77 2.10
1908 3035 8.491045 TTCCAACTTGGGAAAGAAAATCTAAT 57.509 30.769 8.01 0.00 43.77 1.73
1909 3036 9.594936 TTCCAACTTGGGAAAGAAAATCTAATA 57.405 29.630 8.01 0.00 43.77 0.98
1910 3037 9.594936 TCCAACTTGGGAAAGAAAATCTAATAA 57.405 29.630 8.01 0.00 38.32 1.40
1935 3062 9.657419 AAACTTTCACAACATTCTTGAAGATTT 57.343 25.926 0.00 0.00 31.11 2.17
1936 3063 8.638685 ACTTTCACAACATTCTTGAAGATTTG 57.361 30.769 0.00 3.22 31.11 2.32
1938 3065 9.304731 CTTTCACAACATTCTTGAAGATTTGAA 57.695 29.630 14.78 7.76 31.11 2.69
1941 3068 9.304731 TCACAACATTCTTGAAGATTTGAAAAG 57.695 29.630 14.78 5.81 0.00 2.27
1942 3069 8.545420 CACAACATTCTTGAAGATTTGAAAAGG 58.455 33.333 14.78 0.00 0.00 3.11
1944 3071 8.545420 CAACATTCTTGAAGATTTGAAAAGGTG 58.455 33.333 11.23 0.00 0.00 4.00
1945 3072 8.010733 ACATTCTTGAAGATTTGAAAAGGTGA 57.989 30.769 11.23 0.00 0.00 4.02
1947 3074 8.758715 CATTCTTGAAGATTTGAAAAGGTGAAC 58.241 33.333 0.00 0.00 0.00 3.18
1948 3075 6.805713 TCTTGAAGATTTGAAAAGGTGAACC 58.194 36.000 0.00 0.00 0.00 3.62
1949 3076 6.379703 TCTTGAAGATTTGAAAAGGTGAACCA 59.620 34.615 1.62 0.00 38.89 3.67
1959 3086 6.525629 TGAAAAGGTGAACCAAAACTTGAAA 58.474 32.000 1.62 0.00 38.89 2.69
1960 3087 6.425417 TGAAAAGGTGAACCAAAACTTGAAAC 59.575 34.615 1.62 0.00 38.89 2.78
1964 3091 5.011635 AGGTGAACCAAAACTTGAAACTGTT 59.988 36.000 1.62 0.00 38.89 3.16
2018 3148 5.683876 TCTTTGAAGATCCGAGGAAATCT 57.316 39.130 0.00 0.00 33.67 2.40
2108 3238 1.683917 ACAGAGACAAACGCTCTCACT 59.316 47.619 3.10 0.00 40.60 3.41
2169 3299 1.599518 ATGTCAAAGGTTCGCGCCA 60.600 52.632 0.00 0.00 0.00 5.69
2193 3323 1.669115 CAGGAAGTGGTCGGTGCAG 60.669 63.158 0.00 0.00 0.00 4.41
2213 3343 1.609555 GAGCAGTATCCCGACGAATCT 59.390 52.381 0.00 0.00 0.00 2.40
2214 3344 2.812591 GAGCAGTATCCCGACGAATCTA 59.187 50.000 0.00 0.00 0.00 1.98
2264 3394 1.523258 GCTGATGGAGAGCATGCGT 60.523 57.895 13.01 3.22 36.40 5.24
2384 3514 2.438975 CTGTGGGCCATCATGCGT 60.439 61.111 10.70 0.00 0.00 5.24
2743 3873 1.523515 CACGCGTGCACTGTTAGTTTA 59.476 47.619 28.16 0.00 0.00 2.01
2924 4123 0.249398 TCTAAAGGAAGGAGCGGTGC 59.751 55.000 0.00 0.00 0.00 5.01
2963 4162 4.038402 CAGAAGAACAATTGTGGGCTTTCT 59.962 41.667 12.82 13.08 0.00 2.52
2965 4164 4.590850 AGAACAATTGTGGGCTTTCTTC 57.409 40.909 12.82 2.39 0.00 2.87
2985 4184 4.722526 TCTGGAATTGGAAGTTGAAGGA 57.277 40.909 0.00 0.00 0.00 3.36
3020 5989 1.202405 GCTTGTTGTGTTGGAGGGTTG 60.202 52.381 0.00 0.00 0.00 3.77
3084 6053 5.711506 TCACACAAATCCACTATTCAATGCT 59.288 36.000 0.00 0.00 0.00 3.79
3085 6054 6.032094 CACACAAATCCACTATTCAATGCTC 58.968 40.000 0.00 0.00 0.00 4.26
3105 6075 4.083271 GCTCAACTTTTCCGACTATGCTTT 60.083 41.667 0.00 0.00 0.00 3.51
3117 6087 4.526970 GACTATGCTTTTGGATGGGAAGA 58.473 43.478 0.00 0.00 33.25 2.87
3118 6088 5.134725 ACTATGCTTTTGGATGGGAAGAT 57.865 39.130 0.00 0.00 33.25 2.40
3154 6124 1.889530 CGAGAGGGAGTGGTGGGTTC 61.890 65.000 0.00 0.00 0.00 3.62
3237 6209 0.533755 ATGCACTTGAGCTATCCGGC 60.534 55.000 0.00 0.00 34.99 6.13
3275 6249 5.104527 AGTTCCCGGTGATCTAATTCATCAA 60.105 40.000 0.00 0.00 31.98 2.57
3411 6389 4.500477 GGTTGTTATTGATCAATGCTTCGC 59.500 41.667 27.59 14.15 32.50 4.70
3590 6574 4.734398 TTTCGGCATGGCAAATTCTTAT 57.266 36.364 20.37 0.00 0.00 1.73
3623 6607 1.055849 TGCTTTGGCAGTCTCCAGTA 58.944 50.000 0.00 0.00 44.28 2.74
3631 6626 1.202580 GCAGTCTCCAGTATGCGGAAT 60.203 52.381 0.00 0.00 31.97 3.01
3686 6681 9.051679 CAATAACGACCAATATGACAAGGAATA 57.948 33.333 0.00 0.00 0.00 1.75
3687 6682 6.920569 AACGACCAATATGACAAGGAATAC 57.079 37.500 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.233050 GCCATAGATCGATCATGTAAATCCG 59.767 44.000 26.47 13.12 0.00 4.18
1 2 6.344500 AGCCATAGATCGATCATGTAAATCC 58.656 40.000 26.47 6.29 0.00 3.01
3 4 7.548427 CAGAAGCCATAGATCGATCATGTAAAT 59.452 37.037 26.47 7.21 0.00 1.40
4 5 6.870439 CAGAAGCCATAGATCGATCATGTAAA 59.130 38.462 26.47 5.73 0.00 2.01
6 7 5.711976 TCAGAAGCCATAGATCGATCATGTA 59.288 40.000 26.47 11.35 0.00 2.29
7 8 4.525874 TCAGAAGCCATAGATCGATCATGT 59.474 41.667 26.47 9.41 0.00 3.21
8 9 5.069501 TCAGAAGCCATAGATCGATCATG 57.930 43.478 26.47 23.34 0.00 3.07
9 10 4.160065 CCTCAGAAGCCATAGATCGATCAT 59.840 45.833 26.47 14.81 0.00 2.45
10 11 3.509184 CCTCAGAAGCCATAGATCGATCA 59.491 47.826 26.47 13.23 0.00 2.92
11 12 3.119173 CCCTCAGAAGCCATAGATCGATC 60.119 52.174 17.91 17.91 0.00 3.69
12 13 2.830923 CCCTCAGAAGCCATAGATCGAT 59.169 50.000 0.00 0.00 0.00 3.59
13 14 2.242926 CCCTCAGAAGCCATAGATCGA 58.757 52.381 0.00 0.00 0.00 3.59
14 15 1.337635 GCCCTCAGAAGCCATAGATCG 60.338 57.143 0.00 0.00 0.00 3.69
15 16 1.696336 TGCCCTCAGAAGCCATAGATC 59.304 52.381 0.00 0.00 0.00 2.75
16 17 1.811778 TGCCCTCAGAAGCCATAGAT 58.188 50.000 0.00 0.00 0.00 1.98
17 18 1.696336 GATGCCCTCAGAAGCCATAGA 59.304 52.381 0.00 0.00 0.00 1.98
18 19 1.698532 AGATGCCCTCAGAAGCCATAG 59.301 52.381 0.00 0.00 0.00 2.23
19 20 1.696336 GAGATGCCCTCAGAAGCCATA 59.304 52.381 0.00 0.00 41.58 2.74
20 21 0.473326 GAGATGCCCTCAGAAGCCAT 59.527 55.000 0.00 0.00 41.58 4.40
21 22 1.630126 GGAGATGCCCTCAGAAGCCA 61.630 60.000 5.71 0.00 43.76 4.75
22 23 1.148048 GGAGATGCCCTCAGAAGCC 59.852 63.158 5.71 0.00 43.76 4.35
23 24 0.254178 TTGGAGATGCCCTCAGAAGC 59.746 55.000 5.71 0.00 43.76 3.86
24 25 1.741732 CGTTGGAGATGCCCTCAGAAG 60.742 57.143 5.71 0.00 43.76 2.85
25 26 0.250234 CGTTGGAGATGCCCTCAGAA 59.750 55.000 5.71 0.00 43.76 3.02
26 27 1.900351 CGTTGGAGATGCCCTCAGA 59.100 57.895 5.71 0.00 43.76 3.27
27 28 1.817099 GCGTTGGAGATGCCCTCAG 60.817 63.158 5.71 0.00 43.76 3.35
28 29 2.268920 GCGTTGGAGATGCCCTCA 59.731 61.111 5.71 0.00 43.76 3.86
29 30 1.817099 CTGCGTTGGAGATGCCCTC 60.817 63.158 0.00 0.00 39.64 4.30
30 31 2.270205 CTGCGTTGGAGATGCCCT 59.730 61.111 0.00 0.00 39.64 5.19
31 32 2.109126 GTCTGCGTTGGAGATGCCC 61.109 63.158 0.00 0.00 39.64 5.36
32 33 2.109126 GGTCTGCGTTGGAGATGCC 61.109 63.158 0.00 0.00 39.64 4.40
33 34 2.109126 GGGTCTGCGTTGGAGATGC 61.109 63.158 0.00 0.00 40.83 3.91
34 35 1.811266 CGGGTCTGCGTTGGAGATG 60.811 63.158 0.00 0.00 0.00 2.90
35 36 2.579201 CGGGTCTGCGTTGGAGAT 59.421 61.111 0.00 0.00 0.00 2.75
36 37 4.373116 GCGGGTCTGCGTTGGAGA 62.373 66.667 0.00 0.00 0.00 3.71
37 38 4.680237 TGCGGGTCTGCGTTGGAG 62.680 66.667 0.00 0.00 37.81 3.86
38 39 3.647709 TATTTGCGGGTCTGCGTTGGA 62.648 52.381 0.00 0.00 37.81 3.53
39 40 1.302383 TATTTGCGGGTCTGCGTTGG 61.302 55.000 0.00 0.00 37.81 3.77
40 41 0.179200 GTATTTGCGGGTCTGCGTTG 60.179 55.000 0.00 0.00 37.81 4.10
41 42 1.303091 GGTATTTGCGGGTCTGCGTT 61.303 55.000 0.00 0.00 37.81 4.84
42 43 1.743995 GGTATTTGCGGGTCTGCGT 60.744 57.895 0.00 0.00 37.81 5.24
43 44 1.024579 AAGGTATTTGCGGGTCTGCG 61.025 55.000 0.00 0.00 37.81 5.18
44 45 0.733150 GAAGGTATTTGCGGGTCTGC 59.267 55.000 0.00 0.00 0.00 4.26
45 46 1.006832 CGAAGGTATTTGCGGGTCTG 58.993 55.000 0.00 0.00 0.00 3.51
46 47 3.453559 CGAAGGTATTTGCGGGTCT 57.546 52.632 0.00 0.00 0.00 3.85
64 65 5.334319 CGGGAATAAAAACGGACATTTACC 58.666 41.667 0.00 0.00 0.00 2.85
74 75 1.129064 CCACGTCCGGGAATAAAAACG 59.871 52.381 0.00 3.71 36.29 3.60
75 76 2.153645 ACCACGTCCGGGAATAAAAAC 58.846 47.619 0.00 0.00 0.00 2.43
76 77 2.425539 GACCACGTCCGGGAATAAAAA 58.574 47.619 0.00 0.00 0.00 1.94
77 78 1.338960 GGACCACGTCCGGGAATAAAA 60.339 52.381 0.00 0.00 43.14 1.52
78 79 0.249955 GGACCACGTCCGGGAATAAA 59.750 55.000 0.00 0.00 43.14 1.40
79 80 1.899617 GGACCACGTCCGGGAATAA 59.100 57.895 0.00 0.00 43.14 1.40
80 81 3.619938 GGACCACGTCCGGGAATA 58.380 61.111 0.00 0.00 43.14 1.75
88 89 4.430765 ATGTCCGCGGACCACGTC 62.431 66.667 45.59 26.89 46.52 4.34
89 90 4.735132 CATGTCCGCGGACCACGT 62.735 66.667 45.59 29.67 46.52 4.49
90 91 3.716539 ATCATGTCCGCGGACCACG 62.717 63.158 45.59 34.59 43.97 4.94
91 92 2.173669 CATCATGTCCGCGGACCAC 61.174 63.158 45.59 28.83 43.97 4.16
92 93 2.186644 CATCATGTCCGCGGACCA 59.813 61.111 45.59 35.00 43.97 4.02
93 94 3.272334 GCATCATGTCCGCGGACC 61.272 66.667 45.59 31.25 43.97 4.46
94 95 3.630148 CGCATCATGTCCGCGGAC 61.630 66.667 43.88 43.88 45.08 4.79
98 99 2.923426 TTCTCCCGCATCATGTCCGC 62.923 60.000 0.00 0.00 0.00 5.54
99 100 0.461870 TTTCTCCCGCATCATGTCCG 60.462 55.000 0.00 0.00 0.00 4.79
100 101 1.303309 CTTTCTCCCGCATCATGTCC 58.697 55.000 0.00 0.00 0.00 4.02
101 102 0.659957 GCTTTCTCCCGCATCATGTC 59.340 55.000 0.00 0.00 0.00 3.06
102 103 0.749454 GGCTTTCTCCCGCATCATGT 60.749 55.000 0.00 0.00 0.00 3.21
103 104 0.749091 TGGCTTTCTCCCGCATCATG 60.749 55.000 0.00 0.00 0.00 3.07
104 105 0.184451 ATGGCTTTCTCCCGCATCAT 59.816 50.000 0.00 0.00 0.00 2.45
105 106 0.034186 AATGGCTTTCTCCCGCATCA 60.034 50.000 0.00 0.00 0.00 3.07
106 107 0.665298 GAATGGCTTTCTCCCGCATC 59.335 55.000 5.91 0.00 0.00 3.91
107 108 0.034186 TGAATGGCTTTCTCCCGCAT 60.034 50.000 13.47 0.00 35.23 4.73
108 109 0.251121 TTGAATGGCTTTCTCCCGCA 60.251 50.000 13.47 0.00 35.23 5.69
109 110 1.106285 ATTGAATGGCTTTCTCCCGC 58.894 50.000 13.47 0.00 35.23 6.13
110 111 1.406539 CCATTGAATGGCTTTCTCCCG 59.593 52.381 11.82 1.47 44.70 5.14
121 122 2.618241 CCGGATACCACACCATTGAATG 59.382 50.000 0.00 0.00 0.00 2.67
122 123 2.241176 ACCGGATACCACACCATTGAAT 59.759 45.455 9.46 0.00 0.00 2.57
123 124 1.631388 ACCGGATACCACACCATTGAA 59.369 47.619 9.46 0.00 0.00 2.69
124 125 1.281419 ACCGGATACCACACCATTGA 58.719 50.000 9.46 0.00 0.00 2.57
125 126 1.742831 CAACCGGATACCACACCATTG 59.257 52.381 9.46 0.00 0.00 2.82
126 127 1.340600 CCAACCGGATACCACACCATT 60.341 52.381 9.46 0.00 0.00 3.16
127 128 0.254747 CCAACCGGATACCACACCAT 59.745 55.000 9.46 0.00 0.00 3.55
128 129 1.680487 CCAACCGGATACCACACCA 59.320 57.895 9.46 0.00 0.00 4.17
129 130 1.078001 CCCAACCGGATACCACACC 60.078 63.158 9.46 0.00 0.00 4.16
130 131 0.107848 CTCCCAACCGGATACCACAC 60.108 60.000 9.46 0.00 41.00 3.82
131 132 1.268992 CCTCCCAACCGGATACCACA 61.269 60.000 9.46 0.00 41.00 4.17
132 133 0.979187 TCCTCCCAACCGGATACCAC 60.979 60.000 9.46 0.00 41.00 4.16
133 134 0.689745 CTCCTCCCAACCGGATACCA 60.690 60.000 9.46 0.00 41.00 3.25
134 135 0.398098 TCTCCTCCCAACCGGATACC 60.398 60.000 9.46 0.00 41.00 2.73
135 136 1.041437 CTCTCCTCCCAACCGGATAC 58.959 60.000 9.46 0.00 41.00 2.24
136 137 0.931468 TCTCTCCTCCCAACCGGATA 59.069 55.000 9.46 0.00 41.00 2.59
137 138 0.042731 TTCTCTCCTCCCAACCGGAT 59.957 55.000 9.46 0.00 41.00 4.18
138 139 0.178915 TTTCTCTCCTCCCAACCGGA 60.179 55.000 9.46 0.00 38.83 5.14
139 140 0.250513 CTTTCTCTCCTCCCAACCGG 59.749 60.000 0.00 0.00 0.00 5.28
140 141 0.977395 ACTTTCTCTCCTCCCAACCG 59.023 55.000 0.00 0.00 0.00 4.44
141 142 2.502130 CCTACTTTCTCTCCTCCCAACC 59.498 54.545 0.00 0.00 0.00 3.77
142 143 3.055747 CACCTACTTTCTCTCCTCCCAAC 60.056 52.174 0.00 0.00 0.00 3.77
143 144 3.173965 CACCTACTTTCTCTCCTCCCAA 58.826 50.000 0.00 0.00 0.00 4.12
144 145 2.382305 TCACCTACTTTCTCTCCTCCCA 59.618 50.000 0.00 0.00 0.00 4.37
145 146 3.028130 CTCACCTACTTTCTCTCCTCCC 58.972 54.545 0.00 0.00 0.00 4.30
146 147 3.697542 GTCTCACCTACTTTCTCTCCTCC 59.302 52.174 0.00 0.00 0.00 4.30
147 148 3.697542 GGTCTCACCTACTTTCTCTCCTC 59.302 52.174 0.00 0.00 34.73 3.71
148 149 3.076182 TGGTCTCACCTACTTTCTCTCCT 59.924 47.826 0.00 0.00 39.58 3.69
149 150 3.432378 TGGTCTCACCTACTTTCTCTCC 58.568 50.000 0.00 0.00 39.58 3.71
150 151 4.679372 GCATGGTCTCACCTACTTTCTCTC 60.679 50.000 0.00 0.00 39.58 3.20
151 152 3.196685 GCATGGTCTCACCTACTTTCTCT 59.803 47.826 0.00 0.00 39.58 3.10
152 153 3.055819 TGCATGGTCTCACCTACTTTCTC 60.056 47.826 0.00 0.00 39.58 2.87
153 154 2.906389 TGCATGGTCTCACCTACTTTCT 59.094 45.455 0.00 0.00 39.58 2.52
154 155 3.334583 TGCATGGTCTCACCTACTTTC 57.665 47.619 0.00 0.00 39.58 2.62
155 156 3.009473 ACATGCATGGTCTCACCTACTTT 59.991 43.478 29.41 1.17 39.58 2.66
156 157 2.573462 ACATGCATGGTCTCACCTACTT 59.427 45.455 29.41 1.63 39.58 2.24
157 158 2.169352 GACATGCATGGTCTCACCTACT 59.831 50.000 29.41 4.67 39.58 2.57
158 159 2.555199 GACATGCATGGTCTCACCTAC 58.445 52.381 29.41 5.13 39.58 3.18
159 160 1.136891 CGACATGCATGGTCTCACCTA 59.863 52.381 29.41 0.00 39.58 3.08
160 161 0.107993 CGACATGCATGGTCTCACCT 60.108 55.000 29.41 6.76 39.58 4.00
161 162 0.391661 ACGACATGCATGGTCTCACC 60.392 55.000 29.41 9.05 39.22 4.02
162 163 0.723414 CACGACATGCATGGTCTCAC 59.277 55.000 29.41 12.42 33.11 3.51
163 164 0.391528 CCACGACATGCATGGTCTCA 60.392 55.000 29.41 0.00 33.11 3.27
164 165 1.091771 CCCACGACATGCATGGTCTC 61.092 60.000 29.41 17.19 33.11 3.36
165 166 1.078214 CCCACGACATGCATGGTCT 60.078 57.895 29.41 9.91 33.11 3.85
166 167 0.464373 ATCCCACGACATGCATGGTC 60.464 55.000 29.41 21.34 0.00 4.02
167 168 0.836606 TATCCCACGACATGCATGGT 59.163 50.000 29.41 16.34 0.00 3.55
168 169 2.189594 ATATCCCACGACATGCATGG 57.810 50.000 29.41 15.68 0.00 3.66
169 170 4.095334 CCATAATATCCCACGACATGCATG 59.905 45.833 25.09 25.09 0.00 4.06
170 171 4.263462 ACCATAATATCCCACGACATGCAT 60.263 41.667 0.00 0.00 0.00 3.96
171 172 3.072330 ACCATAATATCCCACGACATGCA 59.928 43.478 0.00 0.00 0.00 3.96
172 173 3.674997 ACCATAATATCCCACGACATGC 58.325 45.455 0.00 0.00 0.00 4.06
173 174 5.817296 CCATACCATAATATCCCACGACATG 59.183 44.000 0.00 0.00 0.00 3.21
174 175 5.487488 ACCATACCATAATATCCCACGACAT 59.513 40.000 0.00 0.00 0.00 3.06
175 176 4.841813 ACCATACCATAATATCCCACGACA 59.158 41.667 0.00 0.00 0.00 4.35
176 177 5.175859 CACCATACCATAATATCCCACGAC 58.824 45.833 0.00 0.00 0.00 4.34
177 178 4.841813 ACACCATACCATAATATCCCACGA 59.158 41.667 0.00 0.00 0.00 4.35
178 179 5.160607 ACACCATACCATAATATCCCACG 57.839 43.478 0.00 0.00 0.00 4.94
179 180 5.642063 CGAACACCATACCATAATATCCCAC 59.358 44.000 0.00 0.00 0.00 4.61
180 181 5.280266 CCGAACACCATACCATAATATCCCA 60.280 44.000 0.00 0.00 0.00 4.37
181 182 5.183228 CCGAACACCATACCATAATATCCC 58.817 45.833 0.00 0.00 0.00 3.85
182 183 5.801380 ACCGAACACCATACCATAATATCC 58.199 41.667 0.00 0.00 0.00 2.59
183 184 6.932400 TCAACCGAACACCATACCATAATATC 59.068 38.462 0.00 0.00 0.00 1.63
184 185 6.833041 TCAACCGAACACCATACCATAATAT 58.167 36.000 0.00 0.00 0.00 1.28
185 186 6.098552 TCTCAACCGAACACCATACCATAATA 59.901 38.462 0.00 0.00 0.00 0.98
186 187 5.104693 TCTCAACCGAACACCATACCATAAT 60.105 40.000 0.00 0.00 0.00 1.28
187 188 4.223255 TCTCAACCGAACACCATACCATAA 59.777 41.667 0.00 0.00 0.00 1.90
188 189 3.770388 TCTCAACCGAACACCATACCATA 59.230 43.478 0.00 0.00 0.00 2.74
189 190 2.569853 TCTCAACCGAACACCATACCAT 59.430 45.455 0.00 0.00 0.00 3.55
190 191 1.972075 TCTCAACCGAACACCATACCA 59.028 47.619 0.00 0.00 0.00 3.25
191 192 2.754946 TCTCAACCGAACACCATACC 57.245 50.000 0.00 0.00 0.00 2.73
192 193 3.857052 TCATCTCAACCGAACACCATAC 58.143 45.455 0.00 0.00 0.00 2.39
193 194 3.767131 TCTCATCTCAACCGAACACCATA 59.233 43.478 0.00 0.00 0.00 2.74
194 195 2.567169 TCTCATCTCAACCGAACACCAT 59.433 45.455 0.00 0.00 0.00 3.55
195 196 1.967779 TCTCATCTCAACCGAACACCA 59.032 47.619 0.00 0.00 0.00 4.17
196 197 2.231478 TCTCTCATCTCAACCGAACACC 59.769 50.000 0.00 0.00 0.00 4.16
197 198 3.191581 TCTCTCTCATCTCAACCGAACAC 59.808 47.826 0.00 0.00 0.00 3.32
198 199 3.421844 TCTCTCTCATCTCAACCGAACA 58.578 45.455 0.00 0.00 0.00 3.18
199 200 3.181491 CCTCTCTCTCATCTCAACCGAAC 60.181 52.174 0.00 0.00 0.00 3.95
200 201 3.020274 CCTCTCTCTCATCTCAACCGAA 58.980 50.000 0.00 0.00 0.00 4.30
201 202 2.239907 TCCTCTCTCTCATCTCAACCGA 59.760 50.000 0.00 0.00 0.00 4.69
202 203 2.618241 CTCCTCTCTCTCATCTCAACCG 59.382 54.545 0.00 0.00 0.00 4.44
203 204 3.885297 CTCTCCTCTCTCTCATCTCAACC 59.115 52.174 0.00 0.00 0.00 3.77
204 205 3.885297 CCTCTCCTCTCTCTCATCTCAAC 59.115 52.174 0.00 0.00 0.00 3.18
205 206 3.117550 CCCTCTCCTCTCTCTCATCTCAA 60.118 52.174 0.00 0.00 0.00 3.02
206 207 2.442878 CCCTCTCCTCTCTCTCATCTCA 59.557 54.545 0.00 0.00 0.00 3.27
207 208 2.815589 GCCCTCTCCTCTCTCTCATCTC 60.816 59.091 0.00 0.00 0.00 2.75
208 209 1.145738 GCCCTCTCCTCTCTCTCATCT 59.854 57.143 0.00 0.00 0.00 2.90
209 210 1.620822 GCCCTCTCCTCTCTCTCATC 58.379 60.000 0.00 0.00 0.00 2.92
210 211 0.178992 CGCCCTCTCCTCTCTCTCAT 60.179 60.000 0.00 0.00 0.00 2.90
211 212 1.225983 CGCCCTCTCCTCTCTCTCA 59.774 63.158 0.00 0.00 0.00 3.27
212 213 0.818040 GTCGCCCTCTCCTCTCTCTC 60.818 65.000 0.00 0.00 0.00 3.20
213 214 1.226262 GTCGCCCTCTCCTCTCTCT 59.774 63.158 0.00 0.00 0.00 3.10
214 215 1.826487 GGTCGCCCTCTCCTCTCTC 60.826 68.421 0.00 0.00 0.00 3.20
215 216 1.943730 ATGGTCGCCCTCTCCTCTCT 61.944 60.000 0.00 0.00 0.00 3.10
216 217 1.456705 ATGGTCGCCCTCTCCTCTC 60.457 63.158 0.00 0.00 0.00 3.20
217 218 1.760086 CATGGTCGCCCTCTCCTCT 60.760 63.158 0.00 0.00 0.00 3.69
218 219 2.818132 CATGGTCGCCCTCTCCTC 59.182 66.667 0.00 0.00 0.00 3.71
219 220 3.474570 GCATGGTCGCCCTCTCCT 61.475 66.667 0.00 0.00 0.00 3.69
220 221 3.112205 ATGCATGGTCGCCCTCTCC 62.112 63.158 0.00 0.00 0.00 3.71
221 222 1.890979 CATGCATGGTCGCCCTCTC 60.891 63.158 19.40 0.00 0.00 3.20
222 223 2.191375 CATGCATGGTCGCCCTCT 59.809 61.111 19.40 0.00 0.00 3.69
223 224 2.124570 ACATGCATGGTCGCCCTC 60.125 61.111 29.41 0.00 0.00 4.30
224 225 2.438975 CACATGCATGGTCGCCCT 60.439 61.111 29.41 4.72 0.00 5.19
225 226 4.197498 GCACATGCATGGTCGCCC 62.197 66.667 29.41 7.98 41.59 6.13
235 236 3.332919 TCTCTTCTCTTTCTGCACATGC 58.667 45.455 0.00 0.00 42.50 4.06
236 237 3.933955 CCTCTCTTCTCTTTCTGCACATG 59.066 47.826 0.00 0.00 0.00 3.21
237 238 3.837146 TCCTCTCTTCTCTTTCTGCACAT 59.163 43.478 0.00 0.00 0.00 3.21
238 239 3.234353 TCCTCTCTTCTCTTTCTGCACA 58.766 45.455 0.00 0.00 0.00 4.57
239 240 3.368323 CCTCCTCTCTTCTCTTTCTGCAC 60.368 52.174 0.00 0.00 0.00 4.57
240 241 2.830923 CCTCCTCTCTTCTCTTTCTGCA 59.169 50.000 0.00 0.00 0.00 4.41
241 242 3.096092 TCCTCCTCTCTTCTCTTTCTGC 58.904 50.000 0.00 0.00 0.00 4.26
242 243 3.131046 GCTCCTCCTCTCTTCTCTTTCTG 59.869 52.174 0.00 0.00 0.00 3.02
248 249 1.476488 GTGTGCTCCTCCTCTCTTCTC 59.524 57.143 0.00 0.00 0.00 2.87
255 256 0.530288 GACTCTGTGTGCTCCTCCTC 59.470 60.000 0.00 0.00 0.00 3.71
258 259 2.805099 CAAAAGACTCTGTGTGCTCCTC 59.195 50.000 0.00 0.00 0.00 3.71
263 264 2.682856 TCAACCAAAAGACTCTGTGTGC 59.317 45.455 0.00 0.00 0.00 4.57
269 270 4.763793 CCACATGATCAACCAAAAGACTCT 59.236 41.667 0.00 0.00 0.00 3.24
275 276 4.220382 GGACATCCACATGATCAACCAAAA 59.780 41.667 0.00 0.00 33.72 2.44
284 285 3.118992 CGGATATCGGACATCCACATGAT 60.119 47.826 15.21 0.00 41.87 2.45
316 317 9.058174 TCCGACAAAATAAAGACAAATGTAGAA 57.942 29.630 0.00 0.00 0.00 2.10
317 318 8.610248 TCCGACAAAATAAAGACAAATGTAGA 57.390 30.769 0.00 0.00 0.00 2.59
321 322 7.995998 CGTTTTCCGACAAAATAAAGACAAATG 59.004 33.333 0.00 0.00 39.56 2.32
330 331 3.559242 ACGTCCGTTTTCCGACAAAATAA 59.441 39.130 0.00 0.00 39.56 1.40
338 339 1.661197 CCGAACGTCCGTTTTCCGA 60.661 57.895 6.52 0.00 38.60 4.55
341 342 0.875474 TGGTCCGAACGTCCGTTTTC 60.875 55.000 6.52 0.00 38.60 2.29
346 347 1.731969 GAAGTGGTCCGAACGTCCG 60.732 63.158 0.00 0.00 0.00 4.79
368 369 2.368439 TGTAATTGGCCTGCATCAGTC 58.632 47.619 3.32 0.00 0.00 3.51
370 371 3.872511 TTTGTAATTGGCCTGCATCAG 57.127 42.857 3.32 0.00 0.00 2.90
377 378 3.886505 TCGAACACTTTTGTAATTGGCCT 59.113 39.130 3.32 0.00 33.55 5.19
380 381 5.922546 TCGATCGAACACTTTTGTAATTGG 58.077 37.500 16.99 0.00 33.55 3.16
403 421 6.160459 AGACCCTCAAACCTCCAATATATGTT 59.840 38.462 0.00 0.00 0.00 2.71
411 429 1.978580 GAGAGACCCTCAAACCTCCAA 59.021 52.381 0.00 0.00 41.58 3.53
414 432 2.900546 TCAAGAGAGACCCTCAAACCTC 59.099 50.000 0.00 0.00 44.40 3.85
430 448 6.976934 AAAAAGTTTAGGGCATCTTCAAGA 57.023 33.333 0.00 0.00 0.00 3.02
434 452 7.096551 TGCATTAAAAAGTTTAGGGCATCTTC 58.903 34.615 0.00 0.00 0.00 2.87
435 453 7.003402 TGCATTAAAAAGTTTAGGGCATCTT 57.997 32.000 0.00 0.00 0.00 2.40
440 458 7.441157 AGTTTTCTGCATTAAAAAGTTTAGGGC 59.559 33.333 8.26 0.00 0.00 5.19
447 465 5.831997 AGCGAGTTTTCTGCATTAAAAAGT 58.168 33.333 8.26 8.33 32.21 2.66
448 466 6.417635 TCAAGCGAGTTTTCTGCATTAAAAAG 59.582 34.615 8.26 5.54 0.00 2.27
454 472 2.030805 GGTCAAGCGAGTTTTCTGCATT 60.031 45.455 0.00 0.00 0.00 3.56
458 476 2.807967 TGATGGTCAAGCGAGTTTTCTG 59.192 45.455 0.00 0.00 0.00 3.02
472 490 4.600062 AGAATGGTACCCTTTTGATGGTC 58.400 43.478 10.07 0.00 36.04 4.02
490 508 9.860898 GCCAATGTTGTTAGAGAAATAAAGAAT 57.139 29.630 0.00 0.00 0.00 2.40
503 521 4.641989 AGCCAATCTAGCCAATGTTGTTAG 59.358 41.667 0.00 0.00 0.00 2.34
519 537 3.549794 AGCCAAAGTCATCTAGCCAATC 58.450 45.455 0.00 0.00 0.00 2.67
522 540 2.191400 AGAGCCAAAGTCATCTAGCCA 58.809 47.619 0.00 0.00 0.00 4.75
523 541 2.941720 CAAGAGCCAAAGTCATCTAGCC 59.058 50.000 0.00 0.00 0.00 3.93
524 542 2.354199 GCAAGAGCCAAAGTCATCTAGC 59.646 50.000 0.00 0.00 33.58 3.42
525 543 3.603532 TGCAAGAGCCAAAGTCATCTAG 58.396 45.455 0.00 0.00 41.13 2.43
526 544 3.701205 TGCAAGAGCCAAAGTCATCTA 57.299 42.857 0.00 0.00 41.13 1.98
527 545 2.574006 TGCAAGAGCCAAAGTCATCT 57.426 45.000 0.00 0.00 41.13 2.90
528 546 2.734492 GCATGCAAGAGCCAAAGTCATC 60.734 50.000 14.21 0.00 41.13 2.92
529 547 1.203994 GCATGCAAGAGCCAAAGTCAT 59.796 47.619 14.21 0.00 41.13 3.06
530 548 0.599558 GCATGCAAGAGCCAAAGTCA 59.400 50.000 14.21 0.00 41.13 3.41
531 549 0.455633 CGCATGCAAGAGCCAAAGTC 60.456 55.000 19.57 0.00 41.13 3.01
532 550 1.582968 CGCATGCAAGAGCCAAAGT 59.417 52.632 19.57 0.00 41.13 2.66
533 551 1.153901 CCGCATGCAAGAGCCAAAG 60.154 57.895 19.57 0.00 41.13 2.77
534 552 2.638354 CCCGCATGCAAGAGCCAAA 61.638 57.895 19.57 0.00 41.13 3.28
542 560 0.610509 TTAAAGGAGCCCGCATGCAA 60.611 50.000 19.57 0.00 0.00 4.08
574 592 0.673644 ATTGCGGAACAAGGACTCGG 60.674 55.000 0.00 0.00 42.87 4.63
599 617 3.377485 TGTGTTGCACGTTAGCCTAAAAA 59.623 39.130 0.00 0.00 37.14 1.94
601 619 2.562635 TGTGTTGCACGTTAGCCTAAA 58.437 42.857 0.00 0.00 37.14 1.85
606 624 1.109296 CGTTTGTGTTGCACGTTAGC 58.891 50.000 0.00 0.00 37.14 3.09
611 629 0.522286 TTGCTCGTTTGTGTTGCACG 60.522 50.000 0.00 0.00 37.14 5.34
612 630 1.518102 CATTGCTCGTTTGTGTTGCAC 59.482 47.619 0.00 0.00 33.13 4.57
615 633 5.447478 TTTTTCATTGCTCGTTTGTGTTG 57.553 34.783 0.00 0.00 0.00 3.33
641 659 0.163146 GCAGCGTTTTGTAGTCGTCC 59.837 55.000 0.00 0.00 0.00 4.79
644 663 0.448861 CACGCAGCGTTTTGTAGTCG 60.449 55.000 20.29 0.00 38.32 4.18
656 675 1.082169 TCGTTTCATTGCACGCAGC 60.082 52.632 0.00 0.00 45.96 5.25
657 676 0.725784 GGTCGTTTCATTGCACGCAG 60.726 55.000 0.00 0.00 36.32 5.18
660 679 1.721489 CGAAGGTCGTTTCATTGCACG 60.721 52.381 0.00 2.73 34.72 5.34
682 701 5.179182 GTCACAAAATCCCGCATTGATTTTT 59.821 36.000 12.54 5.36 45.43 1.94
688 707 3.302365 AAGTCACAAAATCCCGCATTG 57.698 42.857 0.00 0.00 0.00 2.82
695 714 4.340617 TCCACCCATAAGTCACAAAATCC 58.659 43.478 0.00 0.00 0.00 3.01
702 721 9.654663 GATAGTAATTATCCACCCATAAGTCAC 57.345 37.037 0.00 0.00 33.42 3.67
703 722 9.387397 TGATAGTAATTATCCACCCATAAGTCA 57.613 33.333 0.00 0.00 37.89 3.41
709 728 7.878127 CGAAGTTGATAGTAATTATCCACCCAT 59.122 37.037 0.00 0.00 35.86 4.00
717 739 6.588204 TGCACCCGAAGTTGATAGTAATTAT 58.412 36.000 0.00 0.00 0.00 1.28
724 746 2.699954 AGTTGCACCCGAAGTTGATAG 58.300 47.619 0.00 0.00 0.00 2.08
762 784 7.383029 TCGTAAGTCACAAAAATACTCATTCGT 59.617 33.333 0.00 0.00 39.48 3.85
765 787 8.495949 CAGTCGTAAGTCACAAAAATACTCATT 58.504 33.333 0.00 0.00 39.48 2.57
766 788 7.870954 TCAGTCGTAAGTCACAAAAATACTCAT 59.129 33.333 0.00 0.00 39.48 2.90
767 789 7.168637 GTCAGTCGTAAGTCACAAAAATACTCA 59.831 37.037 0.00 0.00 39.48 3.41
768 790 7.168637 TGTCAGTCGTAAGTCACAAAAATACTC 59.831 37.037 0.00 0.00 39.48 2.59
770 792 7.169035 TGTCAGTCGTAAGTCACAAAAATAC 57.831 36.000 0.00 0.00 39.48 1.89
771 793 7.439955 ACATGTCAGTCGTAAGTCACAAAAATA 59.560 33.333 0.00 0.00 39.48 1.40
774 796 5.113383 ACATGTCAGTCGTAAGTCACAAAA 58.887 37.500 0.00 0.00 39.48 2.44
776 798 4.316205 ACATGTCAGTCGTAAGTCACAA 57.684 40.909 0.00 0.00 39.48 3.33
779 801 3.554129 CCCAACATGTCAGTCGTAAGTCA 60.554 47.826 0.00 0.00 39.48 3.41
781 803 2.367567 ACCCAACATGTCAGTCGTAAGT 59.632 45.455 0.00 0.00 39.48 2.24
782 804 3.040147 ACCCAACATGTCAGTCGTAAG 57.960 47.619 0.00 0.00 0.00 2.34
783 805 4.603989 TTACCCAACATGTCAGTCGTAA 57.396 40.909 0.00 0.00 0.00 3.18
784 806 4.811969 ATTACCCAACATGTCAGTCGTA 57.188 40.909 0.00 0.00 0.00 3.43
785 807 3.695830 ATTACCCAACATGTCAGTCGT 57.304 42.857 0.00 0.00 0.00 4.34
786 808 5.175859 AGTAATTACCCAACATGTCAGTCG 58.824 41.667 12.05 0.00 0.00 4.18
827 1946 5.041940 CCAGAAGTAGATAGTAAACCACGC 58.958 45.833 0.00 0.00 0.00 5.34
828 1947 6.446781 TCCAGAAGTAGATAGTAAACCACG 57.553 41.667 0.00 0.00 0.00 4.94
829 1948 7.069578 TCCATCCAGAAGTAGATAGTAAACCAC 59.930 40.741 0.00 0.00 0.00 4.16
876 1996 6.091437 ACTGCGATAGTAAAATCTATACGGC 58.909 40.000 0.00 0.00 38.04 5.68
1002 2123 1.529865 GAGTGAAACGTACACAAGCCC 59.470 52.381 21.72 7.19 45.86 5.19
1297 2420 4.988598 CTCGTGGTTGCCCAGCGT 62.989 66.667 0.00 0.00 42.94 5.07
1636 2762 1.183549 GAGAGCACGGGAAAGAGGTA 58.816 55.000 0.00 0.00 0.00 3.08
1748 2874 4.344865 GCCTTTCACCTCCGGCCA 62.345 66.667 2.24 0.00 36.56 5.36
1867 2994 5.869579 AGTTGGAATGAACATGTACTCACT 58.130 37.500 0.00 0.00 0.00 3.41
1868 2995 6.373779 CAAGTTGGAATGAACATGTACTCAC 58.626 40.000 0.00 0.00 0.00 3.51
1874 3001 3.843422 TCCCAAGTTGGAATGAACATGT 58.157 40.909 24.06 0.00 40.96 3.21
1875 3002 4.870123 TTCCCAAGTTGGAATGAACATG 57.130 40.909 24.06 3.08 40.96 3.21
1876 3003 5.147032 TCTTTCCCAAGTTGGAATGAACAT 58.853 37.500 24.06 0.00 43.72 2.71
1878 3005 5.529581 TTCTTTCCCAAGTTGGAATGAAC 57.470 39.130 24.06 0.00 45.87 3.18
1881 3008 6.762333 AGATTTTCTTTCCCAAGTTGGAATG 58.238 36.000 24.06 15.75 43.72 2.67
1882 3009 8.491045 TTAGATTTTCTTTCCCAAGTTGGAAT 57.509 30.769 24.06 12.47 43.72 3.01
1884 3011 9.594936 TTATTAGATTTTCTTTCCCAAGTTGGA 57.405 29.630 24.06 6.71 40.96 3.53
1909 3036 9.657419 AAATCTTCAAGAATGTTGTGAAAGTTT 57.343 25.926 0.00 0.00 31.21 2.66
1910 3037 9.090692 CAAATCTTCAAGAATGTTGTGAAAGTT 57.909 29.630 0.00 0.00 31.21 2.66
1914 3041 9.650539 TTTTCAAATCTTCAAGAATGTTGTGAA 57.349 25.926 0.00 0.00 0.00 3.18
1922 3049 7.928167 GGTTCACCTTTTCAAATCTTCAAGAAT 59.072 33.333 0.00 0.00 0.00 2.40
1923 3050 7.093552 TGGTTCACCTTTTCAAATCTTCAAGAA 60.094 33.333 0.00 0.00 36.82 2.52
1927 3054 6.537453 TTGGTTCACCTTTTCAAATCTTCA 57.463 33.333 0.00 0.00 36.82 3.02
1928 3055 7.549134 AGTTTTGGTTCACCTTTTCAAATCTTC 59.451 33.333 0.00 0.00 36.82 2.87
1930 3057 6.946340 AGTTTTGGTTCACCTTTTCAAATCT 58.054 32.000 0.00 0.00 36.82 2.40
1931 3058 7.333174 TCAAGTTTTGGTTCACCTTTTCAAATC 59.667 33.333 0.00 0.00 36.82 2.17
1932 3059 7.164803 TCAAGTTTTGGTTCACCTTTTCAAAT 58.835 30.769 0.00 0.00 36.82 2.32
1935 3062 5.730296 TCAAGTTTTGGTTCACCTTTTCA 57.270 34.783 0.00 0.00 36.82 2.69
1936 3063 6.649141 AGTTTCAAGTTTTGGTTCACCTTTTC 59.351 34.615 0.00 0.00 36.82 2.29
1938 3065 5.931724 CAGTTTCAAGTTTTGGTTCACCTTT 59.068 36.000 0.00 0.00 36.82 3.11
1941 3068 4.816392 ACAGTTTCAAGTTTTGGTTCACC 58.184 39.130 0.00 0.00 0.00 4.02
1942 3069 6.422400 TGAAACAGTTTCAAGTTTTGGTTCAC 59.578 34.615 23.82 0.00 45.94 3.18
2015 3145 5.491070 TCGGATTTCTCATTTGTGTCAGAT 58.509 37.500 0.00 0.00 0.00 2.90
2018 3148 3.436704 GCTCGGATTTCTCATTTGTGTCA 59.563 43.478 0.00 0.00 0.00 3.58
2108 3238 2.662596 GCCATCGTCCACTCCACA 59.337 61.111 0.00 0.00 0.00 4.17
2169 3299 1.302033 CGACCACTTCCTGCAGCTT 60.302 57.895 8.66 0.00 0.00 3.74
2193 3323 1.609555 AGATTCGTCGGGATACTGCTC 59.390 52.381 0.00 0.00 45.18 4.26
2213 3343 4.643795 GGCAGCCTGCTGATGTTA 57.356 55.556 22.64 0.00 46.30 2.41
2264 3394 3.712907 GGGCTTGGCGGGTGTAGA 61.713 66.667 0.00 0.00 0.00 2.59
2600 3730 2.444624 CCGAACATCCACGTCGCAG 61.445 63.158 0.00 0.00 0.00 5.18
2704 3834 3.782046 GTGCTACATCTACACGGACAAT 58.218 45.455 0.00 0.00 0.00 2.71
2743 3873 3.887621 AACTGCTGATACCACATACGT 57.112 42.857 0.00 0.00 0.00 3.57
2890 4089 0.240145 TTAGAGCGACGACACCACAG 59.760 55.000 0.00 0.00 0.00 3.66
2924 4123 0.107993 TCTGGCGATGAAGCTTCCAG 60.108 55.000 23.42 21.56 44.18 3.86
2963 4162 5.060427 TCCTTCAACTTCCAATTCCAGAA 57.940 39.130 0.00 0.00 0.00 3.02
2965 4164 3.760684 CCTCCTTCAACTTCCAATTCCAG 59.239 47.826 0.00 0.00 0.00 3.86
3020 5989 2.567615 ACCAGGACATGACTTCCAGTAC 59.432 50.000 0.00 0.00 35.33 2.73
3084 6053 5.278266 CCAAAAGCATAGTCGGAAAAGTTGA 60.278 40.000 0.00 0.00 0.00 3.18
3085 6054 4.917415 CCAAAAGCATAGTCGGAAAAGTTG 59.083 41.667 0.00 0.00 0.00 3.16
3105 6075 5.656416 GGTTGAACAATATCTTCCCATCCAA 59.344 40.000 0.00 0.00 0.00 3.53
3117 6087 5.983720 CCTCTCGAATACGGTTGAACAATAT 59.016 40.000 0.00 0.00 40.21 1.28
3118 6088 5.345702 CCTCTCGAATACGGTTGAACAATA 58.654 41.667 0.00 0.00 40.21 1.90
3154 6124 7.637519 CGTACTTGCATTTGAAGTAATCATCAG 59.362 37.037 0.00 0.00 37.59 2.90
3237 6209 1.952296 GGGAACTCCATATGCAAGCAG 59.048 52.381 0.00 0.00 37.91 4.24
3411 6389 1.523938 GAATCCCCGGAAAGCCTCG 60.524 63.158 0.73 0.00 0.00 4.63
3590 6574 3.365868 GCCAAAGCACGTTGATGTCATTA 60.366 43.478 0.00 0.00 39.53 1.90
3631 6626 2.158475 AGTTGACCTCTGGGAAATTGCA 60.158 45.455 0.00 0.00 36.25 4.08
3664 6659 6.920569 GTATTCCTTGTCATATTGGTCGTT 57.079 37.500 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.