AutoCloner

Multiple sequence alignment - TraesCS5D01G180500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G180500	chr5D	100.000	9464	0	0	1	9464	280792843	280783380	0.000000e+00	17477.0
1	TraesCS5D01G180500	chr5B	97.047	4537	105	15	1939	6459	318408323	318403800	0.000000e+00	7609.0
2	TraesCS5D01G180500	chr5B	94.355	1683	40	17	7810	9464	318402361	318400706	0.000000e+00	2531.0
3	TraesCS5D01G180500	chr5B	98.186	1323	20	2	6458	7779	318403676	318402357	0.000000e+00	2307.0
4	TraesCS5D01G180500	chr5B	96.534	1385	20	11	516	1898	318409680	318408322	0.000000e+00	2266.0
5	TraesCS5D01G180500	chr5B	91.287	505	39	5	2	503	318410164	318409662	0.000000e+00	684.0
6	TraesCS5D01G180500	chr5A	97.193	2921	42	14	517	3429	371021577	371024465	0.000000e+00	4903.0
7	TraesCS5D01G180500	chr5A	97.547	2446	44	10	4167	6600	371025404	371027845	0.000000e+00	4170.0
8	TraesCS5D01G180500	chr5A	96.757	1912	28	10	7205	9112	371029264	371031145	0.000000e+00	3157.0
9	TraesCS5D01G180500	chr5A	98.492	663	9	1	3426	4088	371024721	371025382	0.000000e+00	1168.0
10	TraesCS5D01G180500	chr5A	98.451	581	9	0	6599	7179	371028006	371028586	0.000000e+00	1024.0
11	TraesCS5D01G180500	chr5A	92.144	471	34	3	1	470	371020915	371021383	0.000000e+00	662.0
12	TraesCS5D01G180500	chr5A	93.252	163	10	1	9301	9463	371031625	371031786	1.230000e-58	239.0
13	TraesCS5D01G180500	chr5A	97.872	47	1	0	7178	7224	371028669	371028715	2.190000e-11	82.4
14	TraesCS5D01G180500	chr7B	91.489	188	10	6	6915	7101	428829539	428829357	4.390000e-63	254.0
15	TraesCS5D01G180500	chr7B	92.683	41	2	1	403	443	692382723	692382762	3.690000e-04	58.4
16	TraesCS5D01G180500	chr7B	100.000	28	0	0	7858	7885	245595270	245595243	1.700000e-02	52.8
17	TraesCS5D01G180500	chr7A	91.534	189	9	7	6915	7101	476915815	476915632	4.390000e-63	254.0
18	TraesCS5D01G180500	chr7A	91.228	171	14	1	6914	7084	494786995	494786826	2.060000e-56	231.0
19	TraesCS5D01G180500	chr7A	92.857	42	3	0	399	440	696546807	696546766	2.850000e-05	62.1
20	TraesCS5D01G180500	chr7D	94.479	163	8	1	6919	7081	566026736	566026575	5.670000e-62	250.0
21	TraesCS5D01G180500	chr2D	93.293	164	9	2	6919	7082	318563734	318563895	3.420000e-59	241.0
22	TraesCS5D01G180500	chr2D	95.082	122	6	0	4375	4496	381869619	381869740	9.700000e-45	193.0
23	TraesCS5D01G180500	chr2D	95.798	119	5	0	4380	4498	572692618	572692736	9.700000e-45	193.0
24	TraesCS5D01G180500	chr3B	93.252	163	10	1	6919	7081	251650677	251650516	1.230000e-58	239.0
25	TraesCS5D01G180500	chr3B	92.969	128	8	1	4371	4498	637086321	637086447	1.620000e-42	185.0
26	TraesCS5D01G180500	chr3B	89.362	47	3	2	400	446	753679236	753679192	3.690000e-04	58.4
27	TraesCS5D01G180500	chr6A	89.831	177	16	2	6918	7094	442395554	442395728	9.560000e-55	226.0
28	TraesCS5D01G180500	chr1B	95.161	124	6	0	4376	4499	613245925	613246048	7.500000e-46	196.0
29	TraesCS5D01G180500	chr1B	95.082	122	4	2	4376	4496	63547324	63547444	3.490000e-44	191.0
30	TraesCS5D01G180500	chr1B	90.566	53	4	1	395	446	301756671	301756619	1.710000e-07	69.4
31	TraesCS5D01G180500	chr1B	90.909	44	4	0	395	438	612210193	612210236	1.030000e-04	60.2
32	TraesCS5D01G180500	chrUn	95.041	121	6	0	4376	4496	100620883	100620763	3.490000e-44	191.0
33	TraesCS5D01G180500	chr2B	91.111	135	11	1	4368	4502	146454517	146454384	2.100000e-41	182.0
34	TraesCS5D01G180500	chr6D	88.889	54	3	3	392	444	102427860	102427809	7.930000e-06	63.9
35	TraesCS5D01G180500	chr4B	94.872	39	2	0	398	436	60324331	60324369	2.850000e-05	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G180500	chr5D	280783380	280792843	9463	True	17477.000	17477	100.0000	1	9464	1	chr5D.!!$R1	9463
1	TraesCS5D01G180500	chr5B	318400706	318410164	9458	True	3079.400	7609	95.4818	2	9464	5	chr5B.!!$R1	9462
2	TraesCS5D01G180500	chr5A	371020915	371031786	10871	False	1925.675	4903	96.4635	1	9463	8	chr5A.!!$F1	9462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
693	877	0.253207	TTCCTTCCCTTCCCTCCCTC	60.253	60.000	0.00	0.00	0.00	4.30	F
1467	1651	0.979709	ATACTGCTGCTCTGGCCTCA	60.980	55.000	3.32	0.00	37.74	3.86	F
3168	3356	2.841881	GGTACTTGGTGGGAGTAATCCA	59.158	50.000	12.01	0.00	31.86	3.41	F
3536	3990	0.032416	AGCCCATAGTACACGGGTCT	60.032	55.000	13.89	9.54	42.44	3.85	F
5079	5557	0.627469	ATGGCCCCAACCTATCCACT	60.627	55.000	0.00	0.00	0.00	4.00	F
5636	6114	0.817654	GGGGAACAGCAATTACTGGC	59.182	55.000	10.43	2.01	42.21	4.85	F
6158	6637	2.028930	TGTTTTTGACGCCTGGTTTTGT	60.029	40.909	0.00	0.00	0.00	2.83	F
7887	9318	2.618709	CTCCCTCCGTTCCAAAATATGC	59.381	50.000	0.00	0.00	0.00	3.14	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1616	1800	0.963962	ACCTGCATTCACTGGCTTTG	59.036	50.000	0.00	0.00	32.15	2.77	R
3310	3503	3.934068	ACATTTACCCTCAGTACCAACG	58.066	45.455	0.00	0.00	0.00	4.10	R
4221	4695	0.035739	TTGCCACCGTTCCCTCTAAC	59.964	55.000	0.00	0.00	0.00	2.34	R
5262	5740	0.395312	CACTAAGGAACACCGGTGGT	59.605	55.000	36.47	33.27	35.62	4.16	R
7065	7842	2.038164	ACAAACTACTCCCTCCGTTTCC	59.962	50.000	0.00	0.00	0.00	3.13	R
7909	9340	3.629142	AATACTCCCTCCGTTCCAAAG	57.371	47.619	0.00	0.00	0.00	2.77	R
8173	9630	2.102925	TCGGGAAAACTGGTAAACGACT	59.897	45.455	0.00	0.00	0.00	4.18	R
9112	10569	0.332972	AGAATGGGGGCAGACCTTTC	59.667	55.000	0.00	10.65	40.53	2.62	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	6.053650	TCATGCAATTTTTCATTGACCAACA	58.946	32.000	0.00	0.00	0.00	3.33
49	50	6.198650	TCATTGACCAACAGCAGATAAATG	57.801	37.500	0.00	0.00	0.00	2.32
61	62	9.618890	AACAGCAGATAAATGAGAGCTAAATTA	57.381	29.630	0.00	0.00	0.00	1.40
90	91	4.263677	GCATGTGTATTGAGAATGTTTGCG	59.736	41.667	0.00	0.00	0.00	4.85
133	134	6.014898	GTGTTGTTGTTTTGCAAATGTTCTC	58.985	36.000	13.65	3.10	39.03	2.87
162	163	9.981460	ATTAGTTTGAAGTCTCCCATTAAGATT	57.019	29.630	0.00	0.00	0.00	2.40
197	199	1.354705	TCAGGAGAAGAGGAGAACGGA	59.645	52.381	0.00	0.00	0.00	4.69
221	223	1.686587	TCAAGCTCACGAGGAAGTTCA	59.313	47.619	5.01	0.00	0.00	3.18
238	240	6.142320	GGAAGTTCAGTTTTAAAGCGTGATTG	59.858	38.462	5.01	0.00	0.00	2.67
274	276	1.768275	ACGGTGATGGCTATGGAATGA	59.232	47.619	0.00	0.00	0.00	2.57
401	404	7.446931	TCAATAAACTGAGCCAAACTTATCACA	59.553	33.333	0.00	0.00	0.00	3.58
692	876	0.253394	CTTCCTTCCCTTCCCTCCCT	60.253	60.000	0.00	0.00	0.00	4.20
693	877	0.253207	TTCCTTCCCTTCCCTCCCTC	60.253	60.000	0.00	0.00	0.00	4.30
1373	1557	2.752903	TCGTGCTCTGCTTCTGTATGTA	59.247	45.455	0.00	0.00	0.00	2.29
1467	1651	0.979709	ATACTGCTGCTCTGGCCTCA	60.980	55.000	3.32	0.00	37.74	3.86
1644	1828	4.201812	CCAGTGAATGCAGGTTATGTTACG	60.202	45.833	0.00	0.00	0.00	3.18
1645	1829	4.391830	CAGTGAATGCAGGTTATGTTACGT	59.608	41.667	0.00	0.00	0.00	3.57
1792	1978	5.069648	TGCTGCTTTCTGTATATCAGCTACT	59.930	40.000	12.34	0.00	44.99	2.57
2898	3086	6.020599	CGTCGTTATTAACTCTGAGACATTGG	60.021	42.308	12.44	0.00	0.00	3.16
3168	3356	2.841881	GGTACTTGGTGGGAGTAATCCA	59.158	50.000	12.01	0.00	31.86	3.41
3310	3503	4.883083	TGTGTCCATCTCTGTTGTCTTAC	58.117	43.478	0.00	0.00	0.00	2.34
3392	3587	1.001520	TGCGCAGAAGCTAAGGTGTAA	59.998	47.619	5.66	0.00	39.10	2.41
3393	3588	1.661112	GCGCAGAAGCTAAGGTGTAAG	59.339	52.381	0.30	0.00	39.10	2.34
3394	3589	1.661112	CGCAGAAGCTAAGGTGTAAGC	59.339	52.381	0.00	0.00	39.10	3.09
3395	3590	2.699954	GCAGAAGCTAAGGTGTAAGCA	58.300	47.619	0.00	0.00	41.32	3.91
3396	3591	3.074412	GCAGAAGCTAAGGTGTAAGCAA	58.926	45.455	0.00	0.00	41.32	3.91
3397	3592	3.691609	GCAGAAGCTAAGGTGTAAGCAAT	59.308	43.478	0.00	0.00	41.32	3.56
3398	3593	4.156739	GCAGAAGCTAAGGTGTAAGCAATT	59.843	41.667	0.00	0.00	41.32	2.32
3422	3617	2.624316	ATGTCTGCTTGCATCGTTTG	57.376	45.000	0.00	0.00	0.00	2.93
3536	3990	0.032416	AGCCCATAGTACACGGGTCT	60.032	55.000	13.89	9.54	42.44	3.85
3786	4240	6.566141	TGTTTGGTTTAGGCTTTTGTCTTAC	58.434	36.000	0.00	0.00	35.19	2.34
4008	4462	8.768955	GCATATGGTCTTCTTAATACAAGACTG	58.231	37.037	16.06	10.59	45.38	3.51
4088	4562	9.739276	ATATCTGTCAAACCTTGTTTTCTCATA	57.261	29.630	0.00	0.00	0.00	2.15
4089	4563	7.496529	TCTGTCAAACCTTGTTTTCTCATAG	57.503	36.000	0.00	0.00	0.00	2.23
4090	4564	7.054124	TCTGTCAAACCTTGTTTTCTCATAGT	58.946	34.615	0.00	0.00	0.00	2.12
4091	4565	7.556275	TCTGTCAAACCTTGTTTTCTCATAGTT	59.444	33.333	0.00	0.00	0.00	2.24
4092	4566	8.062065	TGTCAAACCTTGTTTTCTCATAGTTT	57.938	30.769	0.00	0.00	0.00	2.66
4093	4567	9.179909	TGTCAAACCTTGTTTTCTCATAGTTTA	57.820	29.630	0.00	0.00	0.00	2.01
4195	4669	7.541783	TGTGACTTAATTATGTTTGCTGCATTC	59.458	33.333	1.84	0.08	0.00	2.67
4196	4670	7.009540	GTGACTTAATTATGTTTGCTGCATTCC	59.990	37.037	1.84	0.00	0.00	3.01
4221	4695	7.540055	CCTTATGCTTACTGCTTCTTTCTTTTG	59.460	37.037	0.00	0.00	43.37	2.44
4282	4756	8.231837	CGTTTGCAGGTTAGCTTACTTTATTTA	58.768	33.333	2.46	0.00	34.99	1.40
4357	4831	8.739972	GGTAGATTTTCTTTTGTATGTGGACAT	58.260	33.333	0.00	0.00	40.22	3.06
4811	5285	7.753309	TCTGAGGAGCTATTTCTACTACATC	57.247	40.000	0.00	0.00	0.00	3.06
5070	5548	2.037847	AAGCTGGATGGCCCCAAC	59.962	61.111	0.00	0.00	35.47	3.77
5079	5557	0.627469	ATGGCCCCAACCTATCCACT	60.627	55.000	0.00	0.00	0.00	4.00
5262	5740	4.727507	TCCTTGCACAACAAAGCTAAAA	57.272	36.364	0.00	0.00	37.96	1.52
5267	5745	2.863740	GCACAACAAAGCTAAAACCACC	59.136	45.455	0.00	0.00	0.00	4.61
5366	5844	7.772332	AGATTTATAGTTGGACTTGTAAGCG	57.228	36.000	0.00	0.00	0.00	4.68
5636	6114	0.817654	GGGGAACAGCAATTACTGGC	59.182	55.000	10.43	2.01	42.21	4.85
6138	6617	9.457110	TTTTATGTTAATGCAAACAGTACTGTG	57.543	29.630	28.55	17.93	44.13	3.66
6139	6618	6.633500	ATGTTAATGCAAACAGTACTGTGT	57.367	33.333	28.55	21.22	44.13	3.72
6158	6637	2.028930	TGTTTTTGACGCCTGGTTTTGT	60.029	40.909	0.00	0.00	0.00	2.83
7059	7836	8.604890	CCGTATTGAAATCTCTAAAAGGTCTTC	58.395	37.037	0.00	0.00	0.00	2.87
7158	7935	4.297299	CCATTTGCATCACATGGTAGTC	57.703	45.455	0.00	0.00	37.05	2.59
7837	9268	4.792068	TGGGATAGTTTTAAGCCTGATGG	58.208	43.478	0.00	0.00	0.00	3.51
7841	9272	6.183360	GGGATAGTTTTAAGCCTGATGGTTTC	60.183	42.308	0.00	0.00	37.87	2.78
7887	9318	2.618709	CTCCCTCCGTTCCAAAATATGC	59.381	50.000	0.00	0.00	0.00	3.14
8081	9514	8.582437	TCTATTCTTTTTAGTCTCGTTCCTGAA	58.418	33.333	0.00	0.00	0.00	3.02
8121	9554	2.656947	AACTTCAGCCTGCTTACCAA	57.343	45.000	0.00	0.00	0.00	3.67
8169	9626	3.375299	GCTTACCAGTTCCACTGCAATAG	59.625	47.826	0.00	0.00	44.63	1.73
8172	9629	3.679389	ACCAGTTCCACTGCAATAGAAG	58.321	45.455	0.00	0.00	44.63	2.85
8173	9630	3.327757	ACCAGTTCCACTGCAATAGAAGA	59.672	43.478	0.00	0.00	44.63	2.87
8537	9994	2.813754	AGCGCTCAAGCAATTGTTTCTA	59.186	40.909	2.64	0.00	42.21	2.10
8737	10194	8.439993	TGTCACAGCTGTTGTAAAATTACTAA	57.560	30.769	18.94	0.00	38.16	2.24
8889	10346	8.709646	ACGTTCTGTATAATCTTTTGACACTTC	58.290	33.333	0.00	0.00	0.00	3.01
9011	10468	6.403636	GGAATAGGTGTAGAACAATGTTGCTG	60.404	42.308	2.20	0.00	0.00	4.41
9112	10569	1.067354	GCCCAAAGCTGTTCTTCATGG	60.067	52.381	0.00	0.00	38.99	3.66
9119	10576	3.416156	AGCTGTTCTTCATGGAAAGGTC	58.584	45.455	0.00	0.00	0.00	3.85
9121	10578	3.190118	GCTGTTCTTCATGGAAAGGTCTG	59.810	47.826	0.00	0.00	0.00	3.51
9127	10584	1.856873	ATGGAAAGGTCTGCCCCCA	60.857	57.895	0.00	0.00	35.00	4.96
9159	10616	2.709475	GATTGTGTCCGCGGATGC	59.291	61.111	33.58	25.80	37.91	3.91
9214	10884	5.144100	TCTGAGAAAACAGAGAAGGAGTCT	58.856	41.667	0.00	0.00	41.21	3.24
9215	10885	5.010516	TCTGAGAAAACAGAGAAGGAGTCTG	59.989	44.000	0.00	0.00	45.94	3.51

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	6.703319	TGGTCAATGAAAAATTGCATGATCT	58.297	32.000	0.00	0.00	0.00	2.75
30	31	5.164620	TCTCATTTATCTGCTGTTGGTCA	57.835	39.130	0.00	0.00	0.00	4.02
90	91	7.538575	ACAACACATTCTTTAGGCAATCATAC	58.461	34.615	0.00	0.00	0.00	2.39
133	134	8.792830	TTAATGGGAGACTTCAAACTAATGAG	57.207	34.615	0.00	0.00	0.00	2.90
184	185	3.368948	GCTTGATTCTCCGTTCTCCTCTT	60.369	47.826	0.00	0.00	0.00	2.85
197	199	2.564947	ACTTCCTCGTGAGCTTGATTCT	59.435	45.455	0.00	0.00	0.00	2.40
221	223	4.618227	GCCCATCAATCACGCTTTAAAACT	60.618	41.667	0.00	0.00	0.00	2.66
238	240	2.699212	GTCGTTTACGCGCCCATC	59.301	61.111	5.73	0.00	39.60	3.51
257	259	4.392047	TCACATCATTCCATAGCCATCAC	58.608	43.478	0.00	0.00	0.00	3.06
274	276	8.663209	AGACTCTCATATATTTAGCCTCACAT	57.337	34.615	0.00	0.00	0.00	3.21
290	292	6.778069	TGATATTCCTAAACCGAGACTCTCAT	59.222	38.462	6.86	0.00	0.00	2.90
401	404	3.696051	GGATTGCTTACCACATGTGACAT	59.304	43.478	27.46	14.06	0.00	3.06
679	863	0.496382	TGAAAGAGGGAGGGAAGGGA	59.504	55.000	0.00	0.00	0.00	4.20
692	876	3.204382	AGGGTTTGAAAGGAGGTGAAAGA	59.796	43.478	0.00	0.00	0.00	2.52
693	877	3.566351	AGGGTTTGAAAGGAGGTGAAAG	58.434	45.455	0.00	0.00	0.00	2.62
1616	1800	0.963962	ACCTGCATTCACTGGCTTTG	59.036	50.000	0.00	0.00	32.15	2.77
3310	3503	3.934068	ACATTTACCCTCAGTACCAACG	58.066	45.455	0.00	0.00	0.00	4.10
3422	3617	9.028185	CCCGTACAAGAAGTAATTGATACTAAC	57.972	37.037	0.00	0.00	44.22	2.34
3536	3990	3.334691	CTTTTGCCTATCAGGTCAACGA	58.665	45.455	0.00	0.00	37.80	3.85
3648	4102	2.035066	ACAAGCAGGTTTCAGCAATCAC	59.965	45.455	0.00	0.00	0.00	3.06
3786	4240	0.331616	CCCCTTCCAGGTACCTTTGG	59.668	60.000	13.15	13.07	31.93	3.28
4008	4462	3.014604	AGGTATAAGTTGATCGCTCGC	57.985	47.619	0.00	0.00	0.00	5.03
4104	4578	9.453572	AGTACAAGAAAATCTCAGATATGCAAA	57.546	29.630	0.00	0.00	0.00	3.68
4169	4643	6.324561	TGCAGCAAACATAATTAAGTCACA	57.675	33.333	0.00	0.00	0.00	3.58
4221	4695	0.035739	TTGCCACCGTTCCCTCTAAC	59.964	55.000	0.00	0.00	0.00	2.34
4282	4756	4.821805	AGAAACATCACGGTCAATCACTTT	59.178	37.500	0.00	0.00	0.00	2.66
4357	4831	8.743085	AGTACTATATCAGTCGGTAGAAACAA	57.257	34.615	0.00	0.00	38.80	2.83
4699	5173	3.323691	TGCTACTGCACCAAGAAGAACTA	59.676	43.478	0.00	0.00	45.31	2.24
4811	5285	5.995897	TCATTCTGAGAGTATGCATGAATGG	59.004	40.000	23.00	11.82	39.48	3.16
5070	5548	4.301072	TGGAGGAACAAAAGTGGATAGG	57.699	45.455	0.00	0.00	0.00	2.57
5079	5557	3.090037	TCGTTTGGTTGGAGGAACAAAA	58.910	40.909	0.00	0.00	35.44	2.44
5172	5650	4.622701	AAGTCAAAGACACAGCAAACTC	57.377	40.909	0.00	0.00	34.60	3.01
5262	5740	0.395312	CACTAAGGAACACCGGTGGT	59.605	55.000	36.47	33.27	35.62	4.16
5267	5745	5.934935	ACAAATTACACTAAGGAACACCG	57.065	39.130	0.00	0.00	0.00	4.94
5366	5844	2.032981	CACACTTGTTGGGCTGGTC	58.967	57.895	0.00	0.00	0.00	4.02
5654	6133	0.107456	ATTGCAGGGAGGTGCTATCG	59.893	55.000	0.00	0.00	44.32	2.92
6138	6617	2.347150	CACAAAACCAGGCGTCAAAAAC	59.653	45.455	0.00	0.00	0.00	2.43
6139	6618	2.231478	TCACAAAACCAGGCGTCAAAAA	59.769	40.909	0.00	0.00	0.00	1.94
6158	6637	7.907841	ATCATCCCATCATTTCAATTTCTCA	57.092	32.000	0.00	0.00	0.00	3.27
6855	7632	6.942005	CCCATACCTTATATTGCATCTGAACA	59.058	38.462	0.00	0.00	0.00	3.18
7009	7786	7.306457	CGGACTACATACGGATGTATATAGACG	60.306	44.444	20.64	15.48	45.42	4.18
7059	7836	3.629142	ACTCCCTCCGTTTCCAAATAG	57.371	47.619	0.00	0.00	0.00	1.73
7065	7842	2.038164	ACAAACTACTCCCTCCGTTTCC	59.962	50.000	0.00	0.00	0.00	3.13
7909	9340	3.629142	AATACTCCCTCCGTTCCAAAG	57.371	47.619	0.00	0.00	0.00	2.77
7997	9428	5.071923	AGCTGGAAGTATCATAAAGTACCCC	59.928	44.000	0.00	0.00	35.30	4.95
8169	9626	4.212847	GGGAAAACTGGTAAACGACTCTTC	59.787	45.833	0.00	0.00	0.00	2.87
8172	9629	2.477754	CGGGAAAACTGGTAAACGACTC	59.522	50.000	0.00	0.00	0.00	3.36
8173	9630	2.102925	TCGGGAAAACTGGTAAACGACT	59.897	45.455	0.00	0.00	0.00	4.18
8352	9809	2.159037	CCATCGATCAAAGATGATGCGG	59.841	50.000	9.81	0.00	46.30	5.69
8737	10194	3.077088	TCTCTACCCCTTCACCTACACTT	59.923	47.826	0.00	0.00	0.00	3.16
9011	10468	9.553064	AGATACAATCACTTTAATGACAGATCC	57.447	33.333	0.00	0.00	0.00	3.36
9112	10569	0.332972	AGAATGGGGGCAGACCTTTC	59.667	55.000	0.00	10.65	40.53	2.62
9119	10576	2.091665	AGGTGAAATAGAATGGGGGCAG	60.092	50.000	0.00	0.00	0.00	4.85
9121	10578	2.310538	CAGGTGAAATAGAATGGGGGC	58.689	52.381	0.00	0.00	0.00	5.80
9214	10884	3.000825	GTCATATGAACGCATGTAACGCA	59.999	43.478	7.07	0.00	35.94	5.24
9215	10885	3.245284	AGTCATATGAACGCATGTAACGC	59.755	43.478	7.07	0.00	35.94	4.84

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.