Multiple sequence alignment - TraesCS5D01G180300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G180300 chr5D 100.000 4762 0 0 2029 6790 280779609 280774848 0.000000e+00 8794.0
1 TraesCS5D01G180300 chr5D 100.000 1705 0 0 1 1705 280781637 280779933 0.000000e+00 3149.0
2 TraesCS5D01G180300 chr5A 96.694 3267 68 20 2549 5793 371035890 371039138 0.000000e+00 5398.0
3 TraesCS5D01G180300 chr5A 88.921 1047 53 21 688 1703 371034222 371035236 0.000000e+00 1232.0
4 TraesCS5D01G180300 chr5A 96.378 497 15 2 2029 2525 371035265 371035758 0.000000e+00 815.0
5 TraesCS5D01G180300 chr5A 87.637 364 43 2 1 363 371033555 371033917 8.140000e-114 422.0
6 TraesCS5D01G180300 chr5A 94.505 182 8 2 5967 6147 371039224 371039404 5.190000e-71 279.0
7 TraesCS5D01G180300 chr5B 94.351 2390 95 22 2650 5022 318396406 318394040 0.000000e+00 3629.0
8 TraesCS5D01G180300 chr5B 88.964 1042 48 21 688 1702 318398223 318397222 0.000000e+00 1225.0
9 TraesCS5D01G180300 chr5B 94.171 772 12 7 5064 5824 318394040 318393291 0.000000e+00 1146.0
10 TraesCS5D01G180300 chr5B 87.122 629 31 19 2029 2633 318397192 318396590 0.000000e+00 667.0
11 TraesCS5D01G180300 chr5B 91.667 456 30 5 6338 6790 318392959 318392509 5.780000e-175 625.0
12 TraesCS5D01G180300 chr5B 89.556 383 40 0 1 383 318398999 318398617 2.850000e-133 486.0
13 TraesCS5D01G180300 chr5B 88.788 330 15 9 5967 6287 318393282 318392966 1.070000e-102 385.0
14 TraesCS5D01G180300 chr5B 82.069 290 41 5 338 616 318398618 318398329 3.170000e-58 237.0
15 TraesCS5D01G180300 chr5B 77.564 156 31 4 460 612 312019139 312018985 2.610000e-14 91.6
16 TraesCS5D01G180300 chr1D 94.737 152 7 1 5822 5973 469531460 469531610 1.140000e-57 235.0
17 TraesCS5D01G180300 chr3D 95.205 146 7 0 5826 5971 602554805 602554660 1.470000e-56 231.0
18 TraesCS5D01G180300 chr3D 95.205 146 7 0 5826 5971 602587132 602586987 1.470000e-56 231.0
19 TraesCS5D01G180300 chr2B 93.243 148 10 0 5822 5969 372508325 372508178 1.150000e-52 219.0
20 TraesCS5D01G180300 chr2B 77.143 140 23 8 440 576 560433594 560433727 9.450000e-09 73.1
21 TraesCS5D01G180300 chr3B 92.361 144 11 0 5826 5969 392812645 392812502 8.930000e-49 206.0
22 TraesCS5D01G180300 chr1A 90.789 152 13 1 5819 5970 492654071 492653921 1.150000e-47 202.0
23 TraesCS5D01G180300 chr3A 91.096 146 13 0 5826 5971 16637264 16637409 1.490000e-46 198.0
24 TraesCS5D01G180300 chr3A 91.096 146 13 0 5826 5971 16640263 16640408 1.490000e-46 198.0
25 TraesCS5D01G180300 chr3A 91.096 146 13 0 5826 5971 16643460 16643605 1.490000e-46 198.0
26 TraesCS5D01G180300 chr2D 84.397 141 20 2 468 607 130436885 130436746 3.300000e-28 137.0
27 TraesCS5D01G180300 chr2D 82.051 156 27 1 458 612 27000711 27000866 1.540000e-26 132.0
28 TraesCS5D01G180300 chr2D 80.488 123 19 4 459 579 22611178 22611059 9.380000e-14 89.8
29 TraesCS5D01G180300 chr4D 81.875 160 25 4 465 622 53227576 53227419 1.540000e-26 132.0
30 TraesCS5D01G180300 chr2A 85.366 123 17 1 458 579 694974337 694974459 7.150000e-25 126.0
31 TraesCS5D01G180300 chrUn 80.000 155 28 1 458 612 56777994 56778145 2.000000e-20 111.0
32 TraesCS5D01G180300 chr6A 78.169 142 26 3 472 611 455039534 455039396 1.210000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G180300 chr5D 280774848 280781637 6789 True 5971.5 8794 100.000 1 6790 2 chr5D.!!$R1 6789
1 TraesCS5D01G180300 chr5A 371033555 371039404 5849 False 1629.2 5398 92.827 1 6147 5 chr5A.!!$F1 6146
2 TraesCS5D01G180300 chr5B 318392509 318398999 6490 True 1050.0 3629 89.586 1 6790 8 chr5B.!!$R2 6789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 967 0.107654 GCGGCTCAGATAACCCAACT 60.108 55.000 0.00 0.0 0.00 3.16 F
1029 1166 0.173708 ACGTTTCGATCCCTCTCTGC 59.826 55.000 0.00 0.0 0.00 4.26 F
1285 1441 1.153127 ACGGCGGGTTTGAACTTCA 60.153 52.632 13.24 0.0 0.00 3.02 F
2541 2717 0.251077 CTGCAGCCTGGTTTCTCCTT 60.251 55.000 0.00 0.0 37.07 3.36 F
2963 3425 2.025321 TGGCTTTTCATCTTCTACCCCC 60.025 50.000 0.00 0.0 0.00 5.40 F
4127 4593 0.173935 TTATACAGCCACACCGGACG 59.826 55.000 9.46 0.0 36.56 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2438 2614 1.451028 GCCACATGCTGAGAGACCC 60.451 63.158 0.00 0.0 36.87 4.46 R
2484 2660 1.542108 GCAGCCGGAAAGATGCTCTAT 60.542 52.381 5.05 0.0 35.78 1.98 R
3081 3543 2.593026 CTCCTGATAGACTGGGGACTC 58.407 57.143 0.00 0.0 40.00 3.36 R
3573 4037 2.976185 TCATGTCAACACCCTCCAGTAA 59.024 45.455 0.00 0.0 0.00 2.24 R
4625 5092 2.139917 TCACAGTGCAAATCCGTACAC 58.860 47.619 0.00 0.0 0.00 2.90 R
5889 6422 0.036388 TCGGCCGCTCTGAATTTTCT 60.036 50.000 23.51 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.791204 CATTCATCCGTCGAGCATCAG 59.209 52.381 0.00 0.00 33.17 2.90
60 61 4.669809 ACGGCCGGCCATTTCCAA 62.670 61.111 42.78 0.00 35.37 3.53
81 82 6.822676 TCCAAATTTCTTGTTGCAACATCTTT 59.177 30.769 31.48 21.06 38.95 2.52
84 85 8.392612 CAAATTTCTTGTTGCAACATCTTTCTT 58.607 29.630 31.48 17.98 38.95 2.52
125 126 3.181445 TGGCCATCAACAGTTCTAGTTGT 60.181 43.478 0.00 0.00 44.97 3.32
131 132 3.607439 CAACAGTTCTAGTTGTTGCACG 58.393 45.455 17.75 0.00 45.09 5.34
156 158 0.392998 CTCCCGTCAATGACCCCTTG 60.393 60.000 7.91 0.00 0.00 3.61
160 162 1.544537 CCGTCAATGACCCCTTGAACA 60.545 52.381 7.91 0.00 34.59 3.18
184 186 2.356695 GAGACCTTCTCTCGGCTCTTAC 59.643 54.545 0.00 0.00 40.30 2.34
205 207 3.120792 CGTATCCATGACCGACGAATTT 58.879 45.455 0.00 0.00 35.59 1.82
218 220 4.267928 CCGACGAATTTGTATCAGGAGAAC 59.732 45.833 0.00 0.00 0.00 3.01
220 222 4.181578 ACGAATTTGTATCAGGAGAACCG 58.818 43.478 0.00 0.00 41.83 4.44
227 229 0.396435 ATCAGGAGAACCGTGCAACA 59.604 50.000 0.00 0.00 41.83 3.33
233 235 3.175976 GAACCGTGCAACACCACCG 62.176 63.158 0.00 0.00 35.74 4.94
234 236 3.980442 AACCGTGCAACACCACCGT 62.980 57.895 0.00 0.00 35.74 4.83
245 247 3.102052 ACACCACCGTTAGTTGTAGTG 57.898 47.619 0.00 0.00 0.00 2.74
282 284 2.114616 TGGATTGGTTGCCTTGTTTGT 58.885 42.857 0.00 0.00 0.00 2.83
296 298 4.515944 CCTTGTTTGTGTTACCATTACCGA 59.484 41.667 0.00 0.00 0.00 4.69
317 319 5.335348 CCGAAGATAACCAAACAAAACGGAT 60.335 40.000 0.00 0.00 38.09 4.18
336 338 8.743085 AACGGATAATAGTCTCACTACAGTTA 57.257 34.615 0.00 0.00 32.84 2.24
342 344 9.751542 ATAATAGTCTCACTACAGTTACAATGC 57.248 33.333 0.00 0.00 32.84 3.56
396 442 1.499056 GTGCACGAGCCATGAACTG 59.501 57.895 0.00 0.00 41.13 3.16
406 452 3.944015 GAGCCATGAACTGAGCATAACTT 59.056 43.478 0.00 0.00 0.00 2.66
454 500 1.608590 CAATGCACCGAGGTTCAAGTT 59.391 47.619 0.00 0.00 0.00 2.66
457 503 1.134220 TGCACCGAGGTTCAAGTTCTT 60.134 47.619 0.00 0.00 0.00 2.52
458 504 1.947456 GCACCGAGGTTCAAGTTCTTT 59.053 47.619 0.00 0.00 0.00 2.52
459 505 2.287009 GCACCGAGGTTCAAGTTCTTTG 60.287 50.000 0.00 0.00 38.17 2.77
460 506 2.290641 CACCGAGGTTCAAGTTCTTTGG 59.709 50.000 0.00 0.00 37.39 3.28
462 508 2.290641 CCGAGGTTCAAGTTCTTTGGTG 59.709 50.000 0.00 0.00 37.39 4.17
464 510 3.288092 GAGGTTCAAGTTCTTTGGTGGT 58.712 45.455 0.00 0.00 37.39 4.16
468 514 3.358111 TCAAGTTCTTTGGTGGTCACA 57.642 42.857 3.40 0.00 37.39 3.58
469 515 3.897239 TCAAGTTCTTTGGTGGTCACAT 58.103 40.909 3.40 0.00 37.39 3.21
479 536 5.667539 TTGGTGGTCACATTTTTCTGAAA 57.332 34.783 0.00 0.00 0.00 2.69
514 571 1.159285 CGGTGATGTGCATTCAGTGT 58.841 50.000 2.81 0.00 0.00 3.55
522 579 2.072298 GTGCATTCAGTGTGAGGAGAC 58.928 52.381 0.00 0.00 0.00 3.36
550 608 1.400846 TCGACTATGAAGCCGTCTGTC 59.599 52.381 0.00 0.00 29.74 3.51
580 638 5.482006 TCGTCAATCTCAAGATGATGTGTT 58.518 37.500 0.00 0.00 34.49 3.32
583 641 5.413833 GTCAATCTCAAGATGATGTGTTGGT 59.586 40.000 0.00 0.00 34.49 3.67
586 644 5.233083 TCTCAAGATGATGTGTTGGTTCT 57.767 39.130 0.00 0.00 32.25 3.01
597 655 4.191544 TGTGTTGGTTCTGTCTCTCAAAG 58.808 43.478 0.00 0.00 0.00 2.77
616 674 1.604378 GTGCTCATAGGGGTGTGCT 59.396 57.895 3.17 0.00 38.89 4.40
620 718 1.614317 GCTCATAGGGGTGTGCTTTGT 60.614 52.381 0.00 0.00 36.11 2.83
623 721 1.812571 CATAGGGGTGTGCTTTGTGTC 59.187 52.381 0.00 0.00 0.00 3.67
625 723 1.136828 AGGGGTGTGCTTTGTGTCTA 58.863 50.000 0.00 0.00 0.00 2.59
666 794 2.993937 TGGACGAACCAAACACTTTCT 58.006 42.857 3.90 0.00 46.75 2.52
667 795 2.940410 TGGACGAACCAAACACTTTCTC 59.060 45.455 3.90 0.00 46.75 2.87
668 796 2.940410 GGACGAACCAAACACTTTCTCA 59.060 45.455 0.00 0.00 38.79 3.27
669 797 3.375922 GGACGAACCAAACACTTTCTCAA 59.624 43.478 0.00 0.00 38.79 3.02
670 798 4.142556 GGACGAACCAAACACTTTCTCAAA 60.143 41.667 0.00 0.00 38.79 2.69
671 799 4.981794 ACGAACCAAACACTTTCTCAAAG 58.018 39.130 0.00 0.00 44.10 2.77
672 800 8.274259 GGACGAACCAAACACTTTCTCAAAGT 62.274 42.308 0.00 0.00 44.49 2.66
673 801 9.006939 GGACGAACCAAACACTTTCTCAAAGTA 62.007 40.741 1.37 0.00 43.11 2.24
791 919 3.299340 AAAGATACGACGTCAGCTGTT 57.701 42.857 17.16 0.00 0.00 3.16
832 967 0.107654 GCGGCTCAGATAACCCAACT 60.108 55.000 0.00 0.00 0.00 3.16
906 1043 4.021456 CCTTCAAAAGACACAAATACCCCC 60.021 45.833 0.00 0.00 0.00 5.40
1029 1166 0.173708 ACGTTTCGATCCCTCTCTGC 59.826 55.000 0.00 0.00 0.00 4.26
1266 1422 1.397343 GAGATTTTCTCGGCCGTTTCC 59.603 52.381 27.15 9.09 33.35 3.13
1280 1436 1.453379 TTTCCACGGCGGGTTTGAA 60.453 52.632 13.24 3.11 34.36 2.69
1285 1441 1.153127 ACGGCGGGTTTGAACTTCA 60.153 52.632 13.24 0.00 0.00 3.02
1311 1467 1.440938 TTCCAGTGTTTTGGGTCGCG 61.441 55.000 0.00 0.00 38.81 5.87
1312 1468 2.051345 CAGTGTTTTGGGTCGCGC 60.051 61.111 0.00 0.00 0.00 6.86
1344 1500 9.015146 AGGGGATTAGTAGAATTTTTAGGATGT 57.985 33.333 0.00 0.00 0.00 3.06
1411 1567 2.029964 TCCGTGGTTTCTGGTCGC 59.970 61.111 0.00 0.00 0.00 5.19
1436 1594 6.998673 CGGAATTCAGGGATTTATTCCTAGTT 59.001 38.462 7.93 0.00 44.75 2.24
1437 1595 7.041098 CGGAATTCAGGGATTTATTCCTAGTTG 60.041 40.741 7.93 0.00 44.75 3.16
1438 1596 7.998964 GGAATTCAGGGATTTATTCCTAGTTGA 59.001 37.037 7.93 0.00 44.75 3.18
1439 1597 8.753497 AATTCAGGGATTTATTCCTAGTTGAC 57.247 34.615 0.00 0.00 44.75 3.18
1440 1598 6.884472 TCAGGGATTTATTCCTAGTTGACA 57.116 37.500 0.00 0.00 44.75 3.58
1450 1608 3.042682 TCCTAGTTGACAGTTGGTGGAA 58.957 45.455 0.00 0.00 0.00 3.53
1462 1620 4.100189 CAGTTGGTGGAATTGTGGGTTTTA 59.900 41.667 0.00 0.00 0.00 1.52
1520 1678 6.798427 AGATCATGCTAAGTCTAGGTTTCA 57.202 37.500 0.00 0.00 0.00 2.69
1525 1683 2.165845 GCTAAGTCTAGGTTTCAGCGGA 59.834 50.000 0.00 0.00 0.00 5.54
1526 1684 3.735514 GCTAAGTCTAGGTTTCAGCGGAG 60.736 52.174 0.00 0.00 0.00 4.63
1527 1685 1.187087 AGTCTAGGTTTCAGCGGAGG 58.813 55.000 0.00 0.00 0.00 4.30
1528 1686 1.183549 GTCTAGGTTTCAGCGGAGGA 58.816 55.000 0.00 0.00 0.00 3.71
1529 1687 1.549170 GTCTAGGTTTCAGCGGAGGAA 59.451 52.381 0.00 0.00 0.00 3.36
1530 1688 2.168728 GTCTAGGTTTCAGCGGAGGAAT 59.831 50.000 0.00 0.00 0.00 3.01
1531 1689 2.838202 TCTAGGTTTCAGCGGAGGAATT 59.162 45.455 0.00 0.00 0.00 2.17
1532 1690 4.028131 TCTAGGTTTCAGCGGAGGAATTA 58.972 43.478 0.00 0.00 0.00 1.40
1533 1691 3.713826 AGGTTTCAGCGGAGGAATTAA 57.286 42.857 0.00 0.00 0.00 1.40
1534 1692 3.610911 AGGTTTCAGCGGAGGAATTAAG 58.389 45.455 0.00 0.00 0.00 1.85
1535 1693 3.009143 AGGTTTCAGCGGAGGAATTAAGT 59.991 43.478 0.00 0.00 0.00 2.24
1536 1694 3.127030 GGTTTCAGCGGAGGAATTAAGTG 59.873 47.826 0.00 0.00 0.00 3.16
1537 1695 3.695830 TTCAGCGGAGGAATTAAGTGT 57.304 42.857 0.00 0.00 0.00 3.55
1538 1696 4.811969 TTCAGCGGAGGAATTAAGTGTA 57.188 40.909 0.00 0.00 0.00 2.90
1539 1697 4.386867 TCAGCGGAGGAATTAAGTGTAG 57.613 45.455 0.00 0.00 0.00 2.74
1540 1698 3.132289 TCAGCGGAGGAATTAAGTGTAGG 59.868 47.826 0.00 0.00 0.00 3.18
1541 1699 2.158943 AGCGGAGGAATTAAGTGTAGGC 60.159 50.000 0.00 0.00 0.00 3.93
1567 1725 4.344679 TGTTGGGATTTTGGATATGATGGC 59.655 41.667 0.00 0.00 0.00 4.40
1577 1735 5.169992 TGGATATGATGGCCTATGAGTTG 57.830 43.478 3.32 0.00 0.00 3.16
1601 1760 2.754946 TCCGAGTGTTGGACCATAAC 57.245 50.000 0.00 0.00 0.00 1.89
1646 1805 9.829507 TTTGGATGTTGTCAGAATTGTTATTTT 57.170 25.926 0.00 0.00 0.00 1.82
1703 1862 7.600752 GCCTACCTTTCTACTATTAGAATGCAG 59.399 40.741 3.62 6.19 42.71 4.41
1704 1863 8.643324 CCTACCTTTCTACTATTAGAATGCAGT 58.357 37.037 3.62 0.00 42.71 4.40
2079 2238 6.267699 ACTTATGCCTGCAGTAGTATGATGTA 59.732 38.462 13.81 0.00 0.00 2.29
2159 2318 8.588290 TTGTTAGAAATTAACATGGCCTACAT 57.412 30.769 3.32 0.00 41.57 2.29
2228 2387 7.770801 TTATCGTGTCTATGAACAATCCAAG 57.229 36.000 0.00 0.00 0.00 3.61
2230 2389 3.935203 CGTGTCTATGAACAATCCAAGCT 59.065 43.478 0.00 0.00 0.00 3.74
2328 2487 9.305555 AGAATAAATCCATCATATCTTGGGTTG 57.694 33.333 0.69 0.00 36.46 3.77
2438 2614 2.924757 TAATCTGCTCATCTGCCAGG 57.075 50.000 0.00 0.00 0.00 4.45
2440 2616 1.706995 ATCTGCTCATCTGCCAGGGG 61.707 60.000 0.00 0.00 0.00 4.79
2484 2660 8.173542 TGTATACTGGCGTTCTTATATCTTGA 57.826 34.615 4.17 0.00 0.00 3.02
2541 2717 0.251077 CTGCAGCCTGGTTTCTCCTT 60.251 55.000 0.00 0.00 37.07 3.36
2549 2725 3.115390 CCTGGTTTCTCCTTCCCATCTA 58.885 50.000 0.00 0.00 37.07 1.98
2562 2844 9.750783 CTCCTTCCCATCTAATTATGAATGATT 57.249 33.333 4.89 0.00 0.00 2.57
2596 2885 7.813852 TTTTCTTACAGCTAGTCGAATCTTC 57.186 36.000 0.00 0.00 0.00 2.87
2740 3196 3.507411 TCCTAAACTGTCTGTAGGCACT 58.493 45.455 7.10 0.00 46.37 4.40
2830 3291 3.575687 CCAAATCTTCTGTCTTTGGGCTT 59.424 43.478 5.56 0.00 43.30 4.35
2909 3371 5.769662 GGTTCCATATATGTTGAATCAGCCA 59.230 40.000 11.73 0.00 0.00 4.75
2963 3425 2.025321 TGGCTTTTCATCTTCTACCCCC 60.025 50.000 0.00 0.00 0.00 5.40
3023 3485 4.696877 CAGGAAAGTACTGCACATGAATCA 59.303 41.667 0.00 0.00 0.00 2.57
3081 3543 6.017852 GTCTGGAAGTAGGTTTGAAAGACTTG 60.018 42.308 4.97 0.00 30.66 3.16
3489 3953 2.798976 TGTTGCTGACAATTTGGCTC 57.201 45.000 3.47 0.00 38.27 4.70
3573 4037 6.178324 GGAGCTGTACCATTACTAAAAACCT 58.822 40.000 0.00 0.00 0.00 3.50
3667 4131 8.899427 TCATCAGAATATGATTCTGTTTCCTC 57.101 34.615 22.32 0.00 46.97 3.71
3851 4317 6.816134 TTGATCCGTTGAATGAGAAATTCA 57.184 33.333 0.00 0.00 40.85 2.57
4037 4503 9.053840 AGTTTGATCTATTGCTGTATTCATCTG 57.946 33.333 0.00 0.00 0.00 2.90
4127 4593 0.173935 TTATACAGCCACACCGGACG 59.826 55.000 9.46 0.00 36.56 4.79
4168 4635 7.161404 TGCTCTTTTGTACTCATTGTAGATGT 58.839 34.615 0.00 0.00 0.00 3.06
4169 4636 8.311109 TGCTCTTTTGTACTCATTGTAGATGTA 58.689 33.333 0.00 0.00 0.00 2.29
4170 4637 8.812329 GCTCTTTTGTACTCATTGTAGATGTAG 58.188 37.037 0.00 0.00 0.00 2.74
4327 4794 3.193479 GGCTACTGGCTTTGCTTTGTAAT 59.807 43.478 0.00 0.00 41.46 1.89
4653 5120 4.651994 GGATTTGCACTGTGATAGTTTCG 58.348 43.478 12.86 0.00 37.60 3.46
4698 5165 3.374988 TCTCAAGTTGCAGCATAAATCGG 59.625 43.478 2.55 0.00 0.00 4.18
4865 5339 6.238484 GCTCAATAAATATTCACAGCCGTTCT 60.238 38.462 0.00 0.00 0.00 3.01
4973 5447 6.544197 TGCACAACACTAGAAATCCAGTAAAA 59.456 34.615 0.00 0.00 0.00 1.52
5022 5496 6.425114 CCATTAAGCTCAGATAGTTACGCATT 59.575 38.462 0.00 0.00 0.00 3.56
5148 5623 6.183360 TGGGCTATTTTCATGTGTCATGATTC 60.183 38.462 12.22 0.00 0.00 2.52
5219 5694 3.318839 GCATATTTATGTGGGCAGCTTGA 59.681 43.478 0.00 0.00 36.11 3.02
5221 5696 5.681954 GCATATTTATGTGGGCAGCTTGAAA 60.682 40.000 0.00 0.00 36.11 2.69
5222 5697 6.518493 CATATTTATGTGGGCAGCTTGAAAT 58.482 36.000 0.00 0.00 0.00 2.17
5223 5698 4.888326 TTTATGTGGGCAGCTTGAAATT 57.112 36.364 0.00 0.00 0.00 1.82
5224 5699 5.991933 TTTATGTGGGCAGCTTGAAATTA 57.008 34.783 0.00 0.00 0.00 1.40
5229 5709 4.955450 TGTGGGCAGCTTGAAATTATATGT 59.045 37.500 0.00 0.00 0.00 2.29
5433 5918 5.426504 TGCACATTTTTGTGATTTCAGGTT 58.573 33.333 10.14 0.00 42.02 3.50
5529 6014 3.102972 TGAGGAGAAATCAGGTGGAGAG 58.897 50.000 0.00 0.00 0.00 3.20
5688 6173 3.450457 ACAAGGTTGGCTTGTTGAAATCA 59.550 39.130 0.00 0.00 41.66 2.57
5829 6362 6.530019 AAAAGTGAATTAGGGCATGTAAGG 57.470 37.500 0.00 0.00 0.00 2.69
5832 6365 2.239400 GAATTAGGGCATGTAAGGGGC 58.761 52.381 0.00 0.00 0.00 5.80
5836 6369 2.044352 GGCATGTAAGGGGCCGTT 60.044 61.111 16.62 16.62 38.04 4.44
5837 6370 1.680989 GGCATGTAAGGGGCCGTTT 60.681 57.895 17.66 6.97 38.04 3.60
5838 6371 1.510844 GCATGTAAGGGGCCGTTTG 59.489 57.895 17.66 10.56 0.00 2.93
5839 6372 1.944234 GCATGTAAGGGGCCGTTTGG 61.944 60.000 17.66 5.74 38.77 3.28
5840 6373 0.322997 CATGTAAGGGGCCGTTTGGA 60.323 55.000 17.66 1.86 37.49 3.53
5841 6374 0.034477 ATGTAAGGGGCCGTTTGGAG 60.034 55.000 17.66 0.00 37.49 3.86
5842 6375 1.378119 GTAAGGGGCCGTTTGGAGG 60.378 63.158 17.66 0.00 37.49 4.30
5890 6423 4.208686 GGACGGACCTGCGGCTAG 62.209 72.222 0.00 0.00 35.41 3.42
5891 6424 3.138798 GACGGACCTGCGGCTAGA 61.139 66.667 0.00 0.00 0.00 2.43
5892 6425 2.678934 ACGGACCTGCGGCTAGAA 60.679 61.111 0.00 0.00 0.00 2.10
5893 6426 2.221906 GACGGACCTGCGGCTAGAAA 62.222 60.000 0.00 0.00 0.00 2.52
5894 6427 1.079405 CGGACCTGCGGCTAGAAAA 60.079 57.895 0.00 0.00 0.00 2.29
5895 6428 0.462047 CGGACCTGCGGCTAGAAAAT 60.462 55.000 0.00 0.00 0.00 1.82
5896 6429 1.751437 GGACCTGCGGCTAGAAAATT 58.249 50.000 0.00 0.00 0.00 1.82
5897 6430 1.671328 GGACCTGCGGCTAGAAAATTC 59.329 52.381 0.00 0.00 0.00 2.17
5898 6431 2.356135 GACCTGCGGCTAGAAAATTCA 58.644 47.619 0.00 0.00 0.00 2.57
5899 6432 2.352960 GACCTGCGGCTAGAAAATTCAG 59.647 50.000 0.00 0.00 0.00 3.02
5900 6433 2.027192 ACCTGCGGCTAGAAAATTCAGA 60.027 45.455 0.00 0.00 0.00 3.27
5901 6434 2.611292 CCTGCGGCTAGAAAATTCAGAG 59.389 50.000 0.00 0.00 0.00 3.35
5902 6435 2.009774 TGCGGCTAGAAAATTCAGAGC 58.990 47.619 0.00 10.11 37.56 4.09
5903 6436 1.004504 GCGGCTAGAAAATTCAGAGCG 60.005 52.381 11.56 9.16 38.54 5.03
5904 6437 1.594862 CGGCTAGAAAATTCAGAGCGG 59.405 52.381 11.56 11.18 38.54 5.52
5905 6438 1.332065 GGCTAGAAAATTCAGAGCGGC 59.668 52.381 11.56 0.00 38.54 6.53
5906 6439 1.332065 GCTAGAAAATTCAGAGCGGCC 59.668 52.381 0.00 0.00 31.65 6.13
5907 6440 1.594862 CTAGAAAATTCAGAGCGGCCG 59.405 52.381 24.05 24.05 0.00 6.13
5908 6441 0.036388 AGAAAATTCAGAGCGGCCGA 60.036 50.000 33.48 6.95 0.00 5.54
5909 6442 0.802494 GAAAATTCAGAGCGGCCGAA 59.198 50.000 33.48 14.93 0.00 4.30
5910 6443 1.199097 GAAAATTCAGAGCGGCCGAAA 59.801 47.619 33.48 14.37 0.00 3.46
5911 6444 0.521735 AAATTCAGAGCGGCCGAAAC 59.478 50.000 33.48 18.74 0.00 2.78
5912 6445 1.635663 AATTCAGAGCGGCCGAAACG 61.636 55.000 33.48 14.37 0.00 3.60
5922 6455 4.323477 CCGAAACGGTGCTCCCCA 62.323 66.667 0.00 0.00 42.73 4.96
5923 6456 2.742372 CGAAACGGTGCTCCCCAG 60.742 66.667 0.00 0.00 0.00 4.45
5932 6465 2.046314 GCTCCCCAGCTTTGCGTA 60.046 61.111 0.00 0.00 43.09 4.42
5933 6466 1.452108 GCTCCCCAGCTTTGCGTAT 60.452 57.895 0.00 0.00 43.09 3.06
5934 6467 1.032114 GCTCCCCAGCTTTGCGTATT 61.032 55.000 0.00 0.00 43.09 1.89
5935 6468 1.463674 CTCCCCAGCTTTGCGTATTT 58.536 50.000 0.00 0.00 0.00 1.40
5936 6469 1.818674 CTCCCCAGCTTTGCGTATTTT 59.181 47.619 0.00 0.00 0.00 1.82
5937 6470 1.543802 TCCCCAGCTTTGCGTATTTTG 59.456 47.619 0.00 0.00 0.00 2.44
5938 6471 1.543802 CCCCAGCTTTGCGTATTTTGA 59.456 47.619 0.00 0.00 0.00 2.69
5939 6472 2.415893 CCCCAGCTTTGCGTATTTTGAG 60.416 50.000 0.00 0.00 0.00 3.02
5940 6473 2.415893 CCCAGCTTTGCGTATTTTGAGG 60.416 50.000 0.00 0.00 0.00 3.86
5941 6474 2.487762 CCAGCTTTGCGTATTTTGAGGA 59.512 45.455 0.00 0.00 0.00 3.71
5942 6475 3.426695 CCAGCTTTGCGTATTTTGAGGAG 60.427 47.826 0.00 0.00 0.00 3.69
5943 6476 2.162408 AGCTTTGCGTATTTTGAGGAGC 59.838 45.455 0.00 0.00 0.00 4.70
5944 6477 2.162408 GCTTTGCGTATTTTGAGGAGCT 59.838 45.455 0.00 0.00 0.00 4.09
5945 6478 3.751621 CTTTGCGTATTTTGAGGAGCTG 58.248 45.455 0.00 0.00 0.00 4.24
5946 6479 1.737838 TGCGTATTTTGAGGAGCTGG 58.262 50.000 0.00 0.00 0.00 4.85
5947 6480 1.003118 TGCGTATTTTGAGGAGCTGGT 59.997 47.619 0.00 0.00 0.00 4.00
5948 6481 1.398390 GCGTATTTTGAGGAGCTGGTG 59.602 52.381 0.00 0.00 0.00 4.17
5949 6482 2.009774 CGTATTTTGAGGAGCTGGTGG 58.990 52.381 0.00 0.00 0.00 4.61
5950 6483 2.354704 CGTATTTTGAGGAGCTGGTGGA 60.355 50.000 0.00 0.00 0.00 4.02
5951 6484 3.682718 CGTATTTTGAGGAGCTGGTGGAT 60.683 47.826 0.00 0.00 0.00 3.41
5952 6485 2.496899 TTTTGAGGAGCTGGTGGATC 57.503 50.000 0.00 0.00 0.00 3.36
5956 6489 3.866582 GGAGCTGGTGGATCCCCG 61.867 72.222 9.90 7.80 44.19 5.73
5957 6490 2.764128 GAGCTGGTGGATCCCCGA 60.764 66.667 9.90 0.00 34.77 5.14
5958 6491 2.285368 AGCTGGTGGATCCCCGAA 60.285 61.111 9.90 0.00 34.77 4.30
5959 6492 2.124695 GCTGGTGGATCCCCGAAC 60.125 66.667 9.90 0.00 34.77 3.95
5960 6493 2.966732 GCTGGTGGATCCCCGAACA 61.967 63.158 9.90 0.00 34.77 3.18
5961 6494 1.221840 CTGGTGGATCCCCGAACAG 59.778 63.158 9.90 5.16 34.77 3.16
5962 6495 2.257409 CTGGTGGATCCCCGAACAGG 62.257 65.000 9.90 0.00 40.63 4.00
5963 6496 2.124695 GTGGATCCCCGAACAGGC 60.125 66.667 9.90 0.00 39.21 4.85
5964 6497 3.407967 TGGATCCCCGAACAGGCC 61.408 66.667 9.90 0.00 39.21 5.19
5965 6498 4.191015 GGATCCCCGAACAGGCCC 62.191 72.222 0.00 0.00 39.21 5.80
6105 6645 9.869757 AATAGCAACCCAAACATAATAAAGTTC 57.130 29.630 0.00 0.00 0.00 3.01
6162 6702 6.222038 TCTAGTTGTCCATATGAACTGTCC 57.778 41.667 15.17 0.00 32.27 4.02
6163 6703 4.908601 AGTTGTCCATATGAACTGTCCA 57.091 40.909 3.65 0.00 0.00 4.02
6184 6724 6.092259 GTCCACAAGTGCTTCGTTAGATTATT 59.908 38.462 0.00 0.00 0.00 1.40
6185 6725 6.312918 TCCACAAGTGCTTCGTTAGATTATTC 59.687 38.462 0.00 0.00 0.00 1.75
6186 6726 6.313905 CCACAAGTGCTTCGTTAGATTATTCT 59.686 38.462 0.00 0.00 35.90 2.40
6187 6727 7.176075 CACAAGTGCTTCGTTAGATTATTCTG 58.824 38.462 0.00 0.00 33.17 3.02
6188 6728 7.063426 CACAAGTGCTTCGTTAGATTATTCTGA 59.937 37.037 0.00 0.00 33.17 3.27
6189 6729 7.602644 ACAAGTGCTTCGTTAGATTATTCTGAA 59.397 33.333 0.00 0.00 33.17 3.02
6222 6762 4.563337 ATTGCTCGATTGTGAATGATGG 57.437 40.909 0.00 0.00 0.00 3.51
6223 6763 2.989909 TGCTCGATTGTGAATGATGGT 58.010 42.857 0.00 0.00 0.00 3.55
6224 6764 4.135747 TGCTCGATTGTGAATGATGGTA 57.864 40.909 0.00 0.00 0.00 3.25
6225 6765 3.871006 TGCTCGATTGTGAATGATGGTAC 59.129 43.478 0.00 0.00 0.00 3.34
6227 6767 4.572389 GCTCGATTGTGAATGATGGTACTT 59.428 41.667 0.00 0.00 0.00 2.24
6228 6768 5.503031 GCTCGATTGTGAATGATGGTACTTG 60.503 44.000 0.00 0.00 0.00 3.16
6229 6769 4.875536 TCGATTGTGAATGATGGTACTTGG 59.124 41.667 0.00 0.00 0.00 3.61
6230 6770 4.875536 CGATTGTGAATGATGGTACTTGGA 59.124 41.667 0.00 0.00 0.00 3.53
6231 6771 5.007039 CGATTGTGAATGATGGTACTTGGAG 59.993 44.000 0.00 0.00 0.00 3.86
6232 6772 5.497464 TTGTGAATGATGGTACTTGGAGA 57.503 39.130 0.00 0.00 0.00 3.71
6233 6773 5.089970 TGTGAATGATGGTACTTGGAGAG 57.910 43.478 0.00 0.00 0.00 3.20
6295 6838 9.213799 TCATATGTTTAAAATGAAAACCTTGGC 57.786 29.630 1.90 0.00 36.26 4.52
6296 6839 5.975410 TGTTTAAAATGAAAACCTTGGCG 57.025 34.783 0.00 0.00 36.26 5.69
6297 6840 5.661458 TGTTTAAAATGAAAACCTTGGCGA 58.339 33.333 0.00 0.00 36.26 5.54
6298 6841 6.106673 TGTTTAAAATGAAAACCTTGGCGAA 58.893 32.000 0.00 0.00 36.26 4.70
6299 6842 6.036191 TGTTTAAAATGAAAACCTTGGCGAAC 59.964 34.615 0.00 0.00 36.26 3.95
6300 6843 3.810310 AAATGAAAACCTTGGCGAACA 57.190 38.095 0.00 0.00 0.00 3.18
6301 6844 3.810310 AATGAAAACCTTGGCGAACAA 57.190 38.095 0.00 0.00 37.55 2.83
6302 6845 2.570442 TGAAAACCTTGGCGAACAAC 57.430 45.000 0.00 0.00 34.76 3.32
6303 6846 1.135333 TGAAAACCTTGGCGAACAACC 59.865 47.619 0.00 0.00 34.76 3.77
6304 6847 1.407618 GAAAACCTTGGCGAACAACCT 59.592 47.619 0.00 0.00 34.76 3.50
6305 6848 2.351706 AAACCTTGGCGAACAACCTA 57.648 45.000 0.00 0.00 34.76 3.08
6306 6849 2.351706 AACCTTGGCGAACAACCTAA 57.648 45.000 0.00 0.00 34.76 2.69
6307 6850 2.579410 ACCTTGGCGAACAACCTAAT 57.421 45.000 0.00 0.00 34.76 1.73
6308 6851 3.706600 ACCTTGGCGAACAACCTAATA 57.293 42.857 0.00 0.00 34.76 0.98
6309 6852 3.340928 ACCTTGGCGAACAACCTAATAC 58.659 45.455 0.00 0.00 34.76 1.89
6310 6853 3.008704 ACCTTGGCGAACAACCTAATACT 59.991 43.478 0.00 0.00 34.76 2.12
6311 6854 3.621715 CCTTGGCGAACAACCTAATACTC 59.378 47.826 0.00 0.00 34.76 2.59
6312 6855 3.965379 TGGCGAACAACCTAATACTCA 57.035 42.857 0.00 0.00 0.00 3.41
6313 6856 4.481368 TGGCGAACAACCTAATACTCAT 57.519 40.909 0.00 0.00 0.00 2.90
6314 6857 5.601583 TGGCGAACAACCTAATACTCATA 57.398 39.130 0.00 0.00 0.00 2.15
6315 6858 6.169557 TGGCGAACAACCTAATACTCATAT 57.830 37.500 0.00 0.00 0.00 1.78
6316 6859 6.588204 TGGCGAACAACCTAATACTCATATT 58.412 36.000 0.00 0.00 35.16 1.28
6317 6860 7.051623 TGGCGAACAACCTAATACTCATATTT 58.948 34.615 0.00 0.00 32.98 1.40
6318 6861 7.225931 TGGCGAACAACCTAATACTCATATTTC 59.774 37.037 0.00 0.00 32.98 2.17
6319 6862 7.225931 GGCGAACAACCTAATACTCATATTTCA 59.774 37.037 0.00 0.00 32.98 2.69
6320 6863 8.774586 GCGAACAACCTAATACTCATATTTCAT 58.225 33.333 0.00 0.00 32.98 2.57
6404 6947 7.531857 TTAAAATGAATAACCTGGCAGACAA 57.468 32.000 17.94 0.04 0.00 3.18
6405 6948 5.391312 AAATGAATAACCTGGCAGACAAC 57.609 39.130 17.94 2.95 0.00 3.32
6406 6949 3.500448 TGAATAACCTGGCAGACAACA 57.500 42.857 17.94 5.59 0.00 3.33
6410 6953 5.414454 TGAATAACCTGGCAGACAACATAAC 59.586 40.000 17.94 0.00 0.00 1.89
6412 6955 1.423541 ACCTGGCAGACAACATAACCA 59.576 47.619 17.94 0.00 0.00 3.67
6414 6957 2.424601 CCTGGCAGACAACATAACCATG 59.575 50.000 17.94 0.00 38.21 3.66
6459 7002 9.619316 GTGCATGATAATACAAACTACAAAACA 57.381 29.630 0.00 0.00 0.00 2.83
6488 7032 3.236632 GCACTTAAATGCCCTTTCTGG 57.763 47.619 0.00 0.00 39.86 3.86
6496 7040 0.625849 TGCCCTTTCTGGATTCCCTC 59.374 55.000 0.00 0.00 38.35 4.30
6524 7068 7.445402 AGTTCTTTTTATCTAGCAGCAAAGTGA 59.555 33.333 0.00 0.00 0.00 3.41
6564 7108 3.664107 TCGGAGATCAAAGGTTGTTCAG 58.336 45.455 0.00 0.00 32.98 3.02
6571 7115 1.338020 CAAAGGTTGTTCAGGGAGCAC 59.662 52.381 0.00 0.00 0.00 4.40
6616 7160 4.028852 TGTACTCAAAGTCCATCGATCG 57.971 45.455 9.36 9.36 0.00 3.69
6647 7193 1.868997 CGAGTTTCGCCTGCACATT 59.131 52.632 0.00 0.00 31.14 2.71
6703 7249 4.371624 TGATGTCATTTTGAGACCCTGT 57.628 40.909 0.00 0.00 35.15 4.00
6707 7253 5.241403 TGTCATTTTGAGACCCTGTATGT 57.759 39.130 0.00 0.00 35.15 2.29
6722 7268 7.633789 ACCCTGTATGTCAATGAAAAGAGTAT 58.366 34.615 0.00 0.00 0.00 2.12
6732 7278 9.565213 GTCAATGAAAAGAGTATCAAATTCAGG 57.435 33.333 0.00 0.00 36.90 3.86
6747 7293 0.325933 TCAGGGGTCTTGTGATGCAG 59.674 55.000 0.00 0.00 0.00 4.41
6750 7296 1.021390 GGGGTCTTGTGATGCAGTCG 61.021 60.000 0.00 0.00 0.00 4.18
6756 7302 3.186409 GTCTTGTGATGCAGTCGCTTAAA 59.814 43.478 0.00 0.00 39.64 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 6.347696 AGATGTTGCAACAAGAAATTTGGAA 58.652 32.000 34.06 8.09 43.03 3.53
56 57 5.916318 AGATGTTGCAACAAGAAATTTGGA 58.084 33.333 34.06 8.30 43.03 3.53
60 61 7.550196 ACAAGAAAGATGTTGCAACAAGAAATT 59.450 29.630 34.06 22.96 43.03 1.82
81 82 0.739462 CGTTGCCGGATGCTACAAGA 60.739 55.000 5.05 0.00 44.60 3.02
131 132 2.032634 TCATTGACGGGAGCAACGC 61.033 57.895 0.00 0.00 34.00 4.84
184 186 2.417339 ATTCGTCGGTCATGGATACG 57.583 50.000 0.00 0.00 42.51 3.06
205 207 1.262417 TGCACGGTTCTCCTGATACA 58.738 50.000 0.00 0.00 0.00 2.29
218 220 1.837538 CTAACGGTGGTGTTGCACGG 61.838 60.000 0.00 0.00 34.83 4.94
220 222 1.018910 AACTAACGGTGGTGTTGCAC 58.981 50.000 0.00 0.00 33.32 4.57
227 229 2.431782 ACACACTACAACTAACGGTGGT 59.568 45.455 0.00 0.00 35.94 4.16
245 247 7.886338 ACCAATCCAAAGAGATTAGAAAACAC 58.114 34.615 0.00 0.00 34.69 3.32
317 319 7.913821 CGCATTGTAACTGTAGTGAGACTATTA 59.086 37.037 0.00 0.00 32.65 0.98
336 338 4.127171 GGTATGAGAATACACCGCATTGT 58.873 43.478 0.00 0.00 0.00 2.71
367 369 1.407434 CTCGTGCACCGTTAACGTAA 58.593 50.000 25.15 6.20 38.43 3.18
396 442 8.639761 TGGAACCTAACTATCTAAGTTATGCTC 58.360 37.037 0.00 0.00 46.85 4.26
406 452 6.479972 CACCACATGGAACCTAACTATCTA 57.520 41.667 4.53 0.00 38.94 1.98
437 483 0.468226 AGAACTTGAACCTCGGTGCA 59.532 50.000 0.00 0.00 0.00 4.57
454 500 4.952957 TCAGAAAAATGTGACCACCAAAGA 59.047 37.500 0.00 0.00 0.00 2.52
457 503 5.667539 TTTCAGAAAAATGTGACCACCAA 57.332 34.783 0.00 0.00 0.00 3.67
458 504 5.867903 ATTTCAGAAAAATGTGACCACCA 57.132 34.783 0.00 0.00 0.00 4.17
459 505 8.831715 AATAATTTCAGAAAAATGTGACCACC 57.168 30.769 0.00 0.00 0.00 4.61
494 551 0.448990 CACTGAATGCACATCACCGG 59.551 55.000 0.00 0.00 0.00 5.28
522 579 2.102633 GCTTCATAGTCGACGAGAACG 58.897 52.381 10.46 10.13 45.75 3.95
550 608 1.253800 CTTGAGATTGACGATGTCGCG 59.746 52.381 0.00 0.00 44.43 5.87
580 638 2.485479 GCACCTTTGAGAGACAGAACCA 60.485 50.000 0.00 0.00 0.00 3.67
583 641 2.700371 TGAGCACCTTTGAGAGACAGAA 59.300 45.455 0.00 0.00 0.00 3.02
586 644 3.196469 CCTATGAGCACCTTTGAGAGACA 59.804 47.826 0.00 0.00 0.00 3.41
597 655 1.452108 GCACACCCCTATGAGCACC 60.452 63.158 0.00 0.00 36.34 5.01
678 806 5.722441 AGTTTACTTTGAGGAACCCCAAAAA 59.278 36.000 2.52 0.00 32.63 1.94
679 807 5.128008 CAGTTTACTTTGAGGAACCCCAAAA 59.872 40.000 2.52 0.00 32.63 2.44
680 808 4.647399 CAGTTTACTTTGAGGAACCCCAAA 59.353 41.667 1.04 1.04 33.88 3.28
681 809 4.211920 CAGTTTACTTTGAGGAACCCCAA 58.788 43.478 0.00 0.00 33.88 4.12
682 810 3.827722 CAGTTTACTTTGAGGAACCCCA 58.172 45.455 0.00 0.00 33.88 4.96
683 811 2.557056 GCAGTTTACTTTGAGGAACCCC 59.443 50.000 0.00 0.00 0.00 4.95
684 812 3.487372 AGCAGTTTACTTTGAGGAACCC 58.513 45.455 0.00 0.00 0.00 4.11
685 813 6.819397 ATTAGCAGTTTACTTTGAGGAACC 57.181 37.500 0.00 0.00 0.00 3.62
686 814 9.989869 GATTATTAGCAGTTTACTTTGAGGAAC 57.010 33.333 0.00 0.00 0.00 3.62
687 815 8.879759 CGATTATTAGCAGTTTACTTTGAGGAA 58.120 33.333 0.00 0.00 0.00 3.36
688 816 8.255206 TCGATTATTAGCAGTTTACTTTGAGGA 58.745 33.333 0.00 0.00 0.00 3.71
791 919 5.177511 CGCTGACATTCTTGAGAACAAACTA 59.822 40.000 0.00 0.00 36.80 2.24
832 967 3.117284 AGAAGGGTTTAAGGGTTTGAGCA 60.117 43.478 0.00 0.00 0.00 4.26
1266 1422 1.281656 GAAGTTCAAACCCGCCGTG 59.718 57.895 0.00 0.00 0.00 4.94
1280 1436 6.332630 CAAAACACTGGAAGAACATTGAAGT 58.667 36.000 0.00 0.00 37.43 3.01
1285 1441 4.030216 ACCCAAAACACTGGAAGAACATT 58.970 39.130 0.00 0.00 38.96 2.71
1311 1467 3.151912 TCTACTAATCCCCTACGAGGC 57.848 52.381 0.00 0.00 32.73 4.70
1312 1468 6.667558 AAATTCTACTAATCCCCTACGAGG 57.332 41.667 0.00 0.00 34.30 4.63
1326 1482 7.510675 TCCTCCACATCCTAAAAATTCTACT 57.489 36.000 0.00 0.00 0.00 2.57
1327 1483 8.624776 CAATCCTCCACATCCTAAAAATTCTAC 58.375 37.037 0.00 0.00 0.00 2.59
1361 1517 1.298859 GCAGCCGGAAACATCGAGTT 61.299 55.000 5.05 0.00 43.89 3.01
1362 1518 1.741770 GCAGCCGGAAACATCGAGT 60.742 57.895 5.05 0.00 0.00 4.18
1367 1523 2.418368 TAATCTGCAGCCGGAAACAT 57.582 45.000 9.47 0.00 0.00 2.71
1436 1594 2.305928 CCACAATTCCACCAACTGTCA 58.694 47.619 0.00 0.00 0.00 3.58
1437 1595 1.613437 CCCACAATTCCACCAACTGTC 59.387 52.381 0.00 0.00 0.00 3.51
1438 1596 1.063266 ACCCACAATTCCACCAACTGT 60.063 47.619 0.00 0.00 0.00 3.55
1439 1597 1.703411 ACCCACAATTCCACCAACTG 58.297 50.000 0.00 0.00 0.00 3.16
1440 1598 2.470057 AACCCACAATTCCACCAACT 57.530 45.000 0.00 0.00 0.00 3.16
1450 1608 5.074115 TCGATTTGGAGTAAAACCCACAAT 58.926 37.500 0.00 0.00 31.11 2.71
1520 1678 2.158943 GCCTACACTTAATTCCTCCGCT 60.159 50.000 0.00 0.00 0.00 5.52
1525 1683 4.910458 ACACTGCCTACACTTAATTCCT 57.090 40.909 0.00 0.00 0.00 3.36
1526 1684 4.156008 CCAACACTGCCTACACTTAATTCC 59.844 45.833 0.00 0.00 0.00 3.01
1527 1685 4.156008 CCCAACACTGCCTACACTTAATTC 59.844 45.833 0.00 0.00 0.00 2.17
1528 1686 4.079253 CCCAACACTGCCTACACTTAATT 58.921 43.478 0.00 0.00 0.00 1.40
1529 1687 3.329520 TCCCAACACTGCCTACACTTAAT 59.670 43.478 0.00 0.00 0.00 1.40
1530 1688 2.706723 TCCCAACACTGCCTACACTTAA 59.293 45.455 0.00 0.00 0.00 1.85
1531 1689 2.331166 TCCCAACACTGCCTACACTTA 58.669 47.619 0.00 0.00 0.00 2.24
1532 1690 1.136828 TCCCAACACTGCCTACACTT 58.863 50.000 0.00 0.00 0.00 3.16
1533 1691 1.362224 ATCCCAACACTGCCTACACT 58.638 50.000 0.00 0.00 0.00 3.55
1534 1692 2.200373 AATCCCAACACTGCCTACAC 57.800 50.000 0.00 0.00 0.00 2.90
1535 1693 2.890311 CAAAATCCCAACACTGCCTACA 59.110 45.455 0.00 0.00 0.00 2.74
1536 1694 2.231235 CCAAAATCCCAACACTGCCTAC 59.769 50.000 0.00 0.00 0.00 3.18
1537 1695 2.109128 TCCAAAATCCCAACACTGCCTA 59.891 45.455 0.00 0.00 0.00 3.93
1538 1696 1.133199 TCCAAAATCCCAACACTGCCT 60.133 47.619 0.00 0.00 0.00 4.75
1539 1697 1.337118 TCCAAAATCCCAACACTGCC 58.663 50.000 0.00 0.00 0.00 4.85
1540 1698 4.402155 TCATATCCAAAATCCCAACACTGC 59.598 41.667 0.00 0.00 0.00 4.40
1541 1699 6.461927 CCATCATATCCAAAATCCCAACACTG 60.462 42.308 0.00 0.00 0.00 3.66
1567 1725 3.679980 CACTCGGAAACACAACTCATAGG 59.320 47.826 0.00 0.00 0.00 2.57
1577 1735 0.942252 GGTCCAACACTCGGAAACAC 59.058 55.000 0.00 0.00 33.29 3.32
1646 1805 7.147213 TGCAGGAAAATCCCCAACTCTATATTA 60.147 37.037 0.00 0.00 37.19 0.98
2031 2190 7.328737 AGTACAAGTACATGATAAACTGGGAC 58.671 38.462 12.43 2.00 38.48 4.46
2105 2264 7.167968 CACAAACCAGAGTTAATTGACACAATG 59.832 37.037 2.93 0.00 34.19 2.82
2228 2387 4.456911 TCATTCTTTCATCCTGTTGACAGC 59.543 41.667 5.62 0.00 42.47 4.40
2230 2389 6.570957 GCAATCATTCTTTCATCCTGTTGACA 60.571 38.462 0.00 0.00 0.00 3.58
2438 2614 1.451028 GCCACATGCTGAGAGACCC 60.451 63.158 0.00 0.00 36.87 4.46
2468 2644 7.973388 AGATGCTCTATCAAGATATAAGAACGC 59.027 37.037 0.00 0.00 38.31 4.84
2484 2660 1.542108 GCAGCCGGAAAGATGCTCTAT 60.542 52.381 5.05 0.00 35.78 1.98
2596 2885 4.005650 ACCATCACAGCATTTGTAGTCTG 58.994 43.478 0.00 0.00 38.16 3.51
2710 3166 9.132923 CCTACAGACAGTTTAGGAGTCAATATA 57.867 37.037 0.00 0.00 35.28 0.86
2797 3253 3.056393 CAGAAGATTTGGCAATTCAGGCA 60.056 43.478 20.54 0.00 42.83 4.75
2866 3328 6.070251 TGGAACCTGCTTGTCAGAGAATATAA 60.070 38.462 0.00 0.00 45.72 0.98
2963 3425 6.403200 CGTGTACCTCCTTATCATTTTGTTGG 60.403 42.308 0.00 0.00 0.00 3.77
3023 3485 4.895297 TCTTCCTTTGAAGCTTCACCATTT 59.105 37.500 28.46 0.00 46.28 2.32
3081 3543 2.593026 CTCCTGATAGACTGGGGACTC 58.407 57.143 0.00 0.00 40.00 3.36
3489 3953 4.245660 TCCTTTACAACAGATGAAGCTCG 58.754 43.478 0.00 0.00 0.00 5.03
3573 4037 2.976185 TCATGTCAACACCCTCCAGTAA 59.024 45.455 0.00 0.00 0.00 2.24
3667 4131 5.291128 CAGGTACAGAAAAGCTACAATACGG 59.709 44.000 0.00 0.00 0.00 4.02
3851 4317 5.927281 AGTGCAAAATGCTTATCAGGATT 57.073 34.783 3.78 0.00 45.31 3.01
4046 4512 7.481798 GCCTAAAGAATACAAAACTGTCAATCG 59.518 37.037 0.00 0.00 0.00 3.34
4127 4593 7.491696 ACAAAAGAGCATATTTCTAGACGGTAC 59.508 37.037 0.00 0.00 0.00 3.34
4168 4635 5.661312 AGTTACCTAACAGCATGACCATCTA 59.339 40.000 0.00 0.00 39.69 1.98
4169 4636 4.471386 AGTTACCTAACAGCATGACCATCT 59.529 41.667 0.00 0.00 39.69 2.90
4170 4637 4.770795 AGTTACCTAACAGCATGACCATC 58.229 43.478 0.00 0.00 39.69 3.51
4171 4638 4.844349 AGTTACCTAACAGCATGACCAT 57.156 40.909 0.00 0.00 39.69 3.55
4172 4639 4.634012 AAGTTACCTAACAGCATGACCA 57.366 40.909 0.00 0.00 39.69 4.02
4173 4640 5.001232 TCAAAGTTACCTAACAGCATGACC 58.999 41.667 0.00 0.00 39.69 4.02
4625 5092 2.139917 TCACAGTGCAAATCCGTACAC 58.860 47.619 0.00 0.00 0.00 2.90
4865 5339 6.037830 CGGACTGGTTTTCAAAGTCTAAAAGA 59.962 38.462 0.00 0.00 40.18 2.52
4973 5447 0.403271 AGGGTTGAGCTTGAGCACAT 59.597 50.000 5.70 0.00 45.16 3.21
5022 5496 1.906574 AGTGAGACGGATAAAAGCCCA 59.093 47.619 0.00 0.00 0.00 5.36
5148 5623 3.941704 ATAGCCTCTGGGGAGAAAAAG 57.058 47.619 0.00 0.00 41.86 2.27
5241 5721 8.340618 TCCAAAACTCATCAAGAGATTTAAGG 57.659 34.615 0.00 0.00 44.55 2.69
5433 5918 3.462982 GCGATCATGTAACATGTACCCA 58.537 45.455 0.00 0.00 0.00 4.51
5688 6173 1.810151 GACGTGCACCCATACAAATGT 59.190 47.619 12.15 0.00 0.00 2.71
5824 6357 1.378119 CCTCCAAACGGCCCCTTAC 60.378 63.158 0.00 0.00 0.00 2.34
5826 6359 4.678743 GCCTCCAAACGGCCCCTT 62.679 66.667 0.00 0.00 41.73 3.95
5881 6414 2.031437 GCTCTGAATTTTCTAGCCGCAG 59.969 50.000 0.00 0.00 33.60 5.18
5882 6415 2.009774 GCTCTGAATTTTCTAGCCGCA 58.990 47.619 0.00 0.00 33.60 5.69
5883 6416 1.004504 CGCTCTGAATTTTCTAGCCGC 60.005 52.381 10.55 0.00 35.13 6.53
5884 6417 1.594862 CCGCTCTGAATTTTCTAGCCG 59.405 52.381 10.55 7.36 35.13 5.52
5885 6418 1.332065 GCCGCTCTGAATTTTCTAGCC 59.668 52.381 10.55 0.00 35.13 3.93
5886 6419 1.332065 GGCCGCTCTGAATTTTCTAGC 59.668 52.381 0.00 7.66 35.19 3.42
5887 6420 1.594862 CGGCCGCTCTGAATTTTCTAG 59.405 52.381 14.67 0.00 0.00 2.43
5888 6421 1.206132 TCGGCCGCTCTGAATTTTCTA 59.794 47.619 23.51 0.00 0.00 2.10
5889 6422 0.036388 TCGGCCGCTCTGAATTTTCT 60.036 50.000 23.51 0.00 0.00 2.52
5890 6423 0.802494 TTCGGCCGCTCTGAATTTTC 59.198 50.000 23.51 0.00 35.24 2.29
5891 6424 1.068541 GTTTCGGCCGCTCTGAATTTT 60.069 47.619 23.51 0.00 39.64 1.82
5892 6425 0.521735 GTTTCGGCCGCTCTGAATTT 59.478 50.000 23.51 0.00 39.64 1.82
5893 6426 1.635663 CGTTTCGGCCGCTCTGAATT 61.636 55.000 23.51 0.00 39.64 2.17
5894 6427 2.100631 CGTTTCGGCCGCTCTGAAT 61.101 57.895 23.51 0.00 39.64 2.57
5895 6428 2.736995 CGTTTCGGCCGCTCTGAA 60.737 61.111 23.51 6.11 38.26 3.02
5896 6429 4.735132 CCGTTTCGGCCGCTCTGA 62.735 66.667 23.51 0.00 41.17 3.27
5906 6439 2.742372 CTGGGGAGCACCGTTTCG 60.742 66.667 0.00 0.00 41.60 3.46
5907 6440 3.056328 GCTGGGGAGCACCGTTTC 61.056 66.667 0.00 0.00 41.60 2.78
5908 6441 2.640581 AAAGCTGGGGAGCACCGTTT 62.641 55.000 0.00 0.00 41.60 3.60
5909 6442 3.133365 AAAGCTGGGGAGCACCGTT 62.133 57.895 0.00 0.00 41.60 4.44
5910 6443 3.570212 AAAGCTGGGGAGCACCGT 61.570 61.111 0.00 0.00 41.60 4.83
5911 6444 3.058160 CAAAGCTGGGGAGCACCG 61.058 66.667 0.00 0.00 41.60 4.94
5912 6445 3.376918 GCAAAGCTGGGGAGCACC 61.377 66.667 0.00 0.00 37.25 5.01
5913 6446 3.741476 CGCAAAGCTGGGGAGCAC 61.741 66.667 0.00 0.00 37.25 4.40
5914 6447 2.196997 ATACGCAAAGCTGGGGAGCA 62.197 55.000 9.31 0.00 39.77 4.26
5915 6448 1.032114 AATACGCAAAGCTGGGGAGC 61.032 55.000 9.31 0.00 39.77 4.70
5916 6449 1.463674 AAATACGCAAAGCTGGGGAG 58.536 50.000 9.31 0.00 39.77 4.30
5917 6450 1.543802 CAAAATACGCAAAGCTGGGGA 59.456 47.619 9.31 0.00 39.77 4.81
5918 6451 1.543802 TCAAAATACGCAAAGCTGGGG 59.456 47.619 0.00 0.00 39.77 4.96
5919 6452 2.415893 CCTCAAAATACGCAAAGCTGGG 60.416 50.000 0.00 0.00 41.20 4.45
5920 6453 2.487762 TCCTCAAAATACGCAAAGCTGG 59.512 45.455 0.00 0.00 0.00 4.85
5921 6454 3.751621 CTCCTCAAAATACGCAAAGCTG 58.248 45.455 0.00 0.00 0.00 4.24
5922 6455 2.162408 GCTCCTCAAAATACGCAAAGCT 59.838 45.455 0.00 0.00 0.00 3.74
5923 6456 2.162408 AGCTCCTCAAAATACGCAAAGC 59.838 45.455 0.00 0.00 0.00 3.51
5924 6457 3.426695 CCAGCTCCTCAAAATACGCAAAG 60.427 47.826 0.00 0.00 0.00 2.77
5925 6458 2.487762 CCAGCTCCTCAAAATACGCAAA 59.512 45.455 0.00 0.00 0.00 3.68
5926 6459 2.083774 CCAGCTCCTCAAAATACGCAA 58.916 47.619 0.00 0.00 0.00 4.85
5927 6460 1.003118 ACCAGCTCCTCAAAATACGCA 59.997 47.619 0.00 0.00 0.00 5.24
5928 6461 1.398390 CACCAGCTCCTCAAAATACGC 59.602 52.381 0.00 0.00 0.00 4.42
5929 6462 2.009774 CCACCAGCTCCTCAAAATACG 58.990 52.381 0.00 0.00 0.00 3.06
5930 6463 3.350219 TCCACCAGCTCCTCAAAATAC 57.650 47.619 0.00 0.00 0.00 1.89
5931 6464 3.117888 GGATCCACCAGCTCCTCAAAATA 60.118 47.826 6.95 0.00 38.79 1.40
5932 6465 2.357569 GGATCCACCAGCTCCTCAAAAT 60.358 50.000 6.95 0.00 38.79 1.82
5933 6466 1.004745 GGATCCACCAGCTCCTCAAAA 59.995 52.381 6.95 0.00 38.79 2.44
5934 6467 0.620556 GGATCCACCAGCTCCTCAAA 59.379 55.000 6.95 0.00 38.79 2.69
5935 6468 1.274703 GGGATCCACCAGCTCCTCAA 61.275 60.000 15.23 0.00 41.20 3.02
5936 6469 1.690633 GGGATCCACCAGCTCCTCA 60.691 63.158 15.23 0.00 41.20 3.86
5937 6470 2.447714 GGGGATCCACCAGCTCCTC 61.448 68.421 15.23 0.00 41.20 3.71
5938 6471 2.367512 GGGGATCCACCAGCTCCT 60.368 66.667 15.23 0.00 41.20 3.69
5939 6472 3.866582 CGGGGATCCACCAGCTCC 61.867 72.222 15.23 2.23 41.20 4.70
5940 6473 2.367202 TTCGGGGATCCACCAGCTC 61.367 63.158 15.23 0.00 41.20 4.09
5941 6474 2.285368 TTCGGGGATCCACCAGCT 60.285 61.111 15.23 0.00 41.20 4.24
5942 6475 2.124695 GTTCGGGGATCCACCAGC 60.125 66.667 15.23 0.00 41.20 4.85
5943 6476 1.221840 CTGTTCGGGGATCCACCAG 59.778 63.158 15.23 9.26 41.20 4.00
5944 6477 2.297895 CCTGTTCGGGGATCCACCA 61.298 63.158 15.23 2.33 41.20 4.17
5945 6478 2.590092 CCTGTTCGGGGATCCACC 59.410 66.667 15.23 11.49 38.08 4.61
5946 6479 2.124695 GCCTGTTCGGGGATCCAC 60.125 66.667 15.23 9.60 0.00 4.02
5947 6480 3.407967 GGCCTGTTCGGGGATCCA 61.408 66.667 15.23 0.00 0.00 3.41
5948 6481 4.191015 GGGCCTGTTCGGGGATCC 62.191 72.222 1.92 1.92 0.00 3.36
5949 6482 1.342672 TTAGGGCCTGTTCGGGGATC 61.343 60.000 18.53 0.00 0.00 3.36
5950 6483 1.307517 TTAGGGCCTGTTCGGGGAT 60.308 57.895 18.53 0.00 0.00 3.85
5951 6484 1.993391 CTTAGGGCCTGTTCGGGGA 60.993 63.158 18.53 0.00 0.00 4.81
5952 6485 2.253403 GACTTAGGGCCTGTTCGGGG 62.253 65.000 18.53 0.64 0.00 5.73
5953 6486 1.221021 GACTTAGGGCCTGTTCGGG 59.779 63.158 18.53 2.10 0.00 5.14
5954 6487 0.391263 GTGACTTAGGGCCTGTTCGG 60.391 60.000 18.53 3.95 0.00 4.30
5955 6488 0.391263 GGTGACTTAGGGCCTGTTCG 60.391 60.000 18.53 3.92 0.00 3.95
5956 6489 0.690762 TGGTGACTTAGGGCCTGTTC 59.309 55.000 18.53 10.08 0.00 3.18
5957 6490 1.145571 TTGGTGACTTAGGGCCTGTT 58.854 50.000 18.53 0.00 0.00 3.16
5958 6491 1.145571 TTTGGTGACTTAGGGCCTGT 58.854 50.000 18.53 6.20 0.00 4.00
5959 6492 1.202879 TGTTTGGTGACTTAGGGCCTG 60.203 52.381 18.53 2.03 0.00 4.85
5960 6493 1.073923 CTGTTTGGTGACTTAGGGCCT 59.926 52.381 12.58 12.58 0.00 5.19
5961 6494 1.073284 TCTGTTTGGTGACTTAGGGCC 59.927 52.381 0.00 0.00 0.00 5.80
5962 6495 2.152016 GTCTGTTTGGTGACTTAGGGC 58.848 52.381 0.00 0.00 0.00 5.19
5963 6496 3.557264 GGAGTCTGTTTGGTGACTTAGGG 60.557 52.174 0.00 0.00 42.79 3.53
5964 6497 3.557264 GGGAGTCTGTTTGGTGACTTAGG 60.557 52.174 0.00 0.00 42.79 2.69
5965 6498 3.557264 GGGGAGTCTGTTTGGTGACTTAG 60.557 52.174 0.00 0.00 42.79 2.18
6119 6659 8.856490 ACTAGAACATGTGTGAAAAATTTGAC 57.144 30.769 0.00 0.00 0.00 3.18
6125 6665 6.375736 TGGACAACTAGAACATGTGTGAAAAA 59.624 34.615 0.00 0.00 0.00 1.94
6162 6702 7.063426 TCAGAATAATCTAACGAAGCACTTGTG 59.937 37.037 0.00 0.00 33.50 3.33
6163 6703 7.097192 TCAGAATAATCTAACGAAGCACTTGT 58.903 34.615 0.00 0.00 33.50 3.16
6184 6724 4.922206 AGCAATTCATACCCAACTTCAGA 58.078 39.130 0.00 0.00 0.00 3.27
6185 6725 4.201851 CGAGCAATTCATACCCAACTTCAG 60.202 45.833 0.00 0.00 0.00 3.02
6186 6726 3.689161 CGAGCAATTCATACCCAACTTCA 59.311 43.478 0.00 0.00 0.00 3.02
6187 6727 3.938963 TCGAGCAATTCATACCCAACTTC 59.061 43.478 0.00 0.00 0.00 3.01
6188 6728 3.950397 TCGAGCAATTCATACCCAACTT 58.050 40.909 0.00 0.00 0.00 2.66
6189 6729 3.627395 TCGAGCAATTCATACCCAACT 57.373 42.857 0.00 0.00 0.00 3.16
6201 6741 3.949754 ACCATCATTCACAATCGAGCAAT 59.050 39.130 0.00 0.00 0.00 3.56
6222 6762 5.614887 GCGTTTGAACAATCTCTCCAAGTAC 60.615 44.000 0.00 0.00 0.00 2.73
6223 6763 4.451096 GCGTTTGAACAATCTCTCCAAGTA 59.549 41.667 0.00 0.00 0.00 2.24
6224 6764 3.251004 GCGTTTGAACAATCTCTCCAAGT 59.749 43.478 0.00 0.00 0.00 3.16
6225 6765 3.499918 AGCGTTTGAACAATCTCTCCAAG 59.500 43.478 0.00 0.00 0.00 3.61
6227 6767 3.067106 GAGCGTTTGAACAATCTCTCCA 58.933 45.455 0.00 0.00 0.00 3.86
6228 6768 3.330267 AGAGCGTTTGAACAATCTCTCC 58.670 45.455 10.16 0.00 29.61 3.71
6229 6769 5.403246 TCTAGAGCGTTTGAACAATCTCTC 58.597 41.667 13.38 10.50 34.17 3.20
6230 6770 5.392767 TCTAGAGCGTTTGAACAATCTCT 57.607 39.130 14.01 14.01 35.45 3.10
6231 6771 5.445275 GCTTCTAGAGCGTTTGAACAATCTC 60.445 44.000 0.00 0.00 42.46 2.75
6232 6772 4.390297 GCTTCTAGAGCGTTTGAACAATCT 59.610 41.667 0.00 0.00 42.46 2.40
6233 6773 4.642953 GCTTCTAGAGCGTTTGAACAATC 58.357 43.478 0.00 0.00 42.46 2.67
6269 6812 9.213799 GCCAAGGTTTTCATTTTAAACATATGA 57.786 29.630 10.38 0.00 37.25 2.15
6287 6830 2.351706 TTAGGTTGTTCGCCAAGGTT 57.648 45.000 0.00 0.00 32.51 3.50
6289 6832 3.606687 AGTATTAGGTTGTTCGCCAAGG 58.393 45.455 0.00 0.00 32.51 3.61
6290 6833 4.250464 TGAGTATTAGGTTGTTCGCCAAG 58.750 43.478 0.00 0.00 32.51 3.61
6291 6834 4.274602 TGAGTATTAGGTTGTTCGCCAA 57.725 40.909 0.00 0.00 0.00 4.52
6293 6836 7.225931 TGAAATATGAGTATTAGGTTGTTCGCC 59.774 37.037 0.00 0.00 30.42 5.54
6294 6837 8.138365 TGAAATATGAGTATTAGGTTGTTCGC 57.862 34.615 0.00 0.00 30.42 4.70
6321 6864 8.850156 GGTTGTCTTATCCTGCACAATATAATT 58.150 33.333 0.00 0.00 31.65 1.40
6322 6865 7.173218 CGGTTGTCTTATCCTGCACAATATAAT 59.827 37.037 0.00 0.00 31.65 1.28
6323 6866 6.481976 CGGTTGTCTTATCCTGCACAATATAA 59.518 38.462 0.00 0.00 31.65 0.98
6324 6867 5.989168 CGGTTGTCTTATCCTGCACAATATA 59.011 40.000 0.00 0.00 31.65 0.86
6325 6868 4.816385 CGGTTGTCTTATCCTGCACAATAT 59.184 41.667 0.00 0.00 31.65 1.28
6326 6869 4.188462 CGGTTGTCTTATCCTGCACAATA 58.812 43.478 0.00 0.00 31.65 1.90
6327 6870 3.009723 CGGTTGTCTTATCCTGCACAAT 58.990 45.455 0.00 0.00 31.65 2.71
6328 6871 2.422597 CGGTTGTCTTATCCTGCACAA 58.577 47.619 0.00 0.00 0.00 3.33
6329 6872 1.943968 GCGGTTGTCTTATCCTGCACA 60.944 52.381 0.00 0.00 0.00 4.57
6330 6873 0.727398 GCGGTTGTCTTATCCTGCAC 59.273 55.000 0.00 0.00 0.00 4.57
6331 6874 0.323302 TGCGGTTGTCTTATCCTGCA 59.677 50.000 0.00 0.00 0.00 4.41
6332 6875 0.727398 GTGCGGTTGTCTTATCCTGC 59.273 55.000 0.00 0.00 0.00 4.85
6333 6876 2.386661 AGTGCGGTTGTCTTATCCTG 57.613 50.000 0.00 0.00 0.00 3.86
6334 6877 3.362706 TCTAGTGCGGTTGTCTTATCCT 58.637 45.455 0.00 0.00 0.00 3.24
6335 6878 3.795623 TCTAGTGCGGTTGTCTTATCC 57.204 47.619 0.00 0.00 0.00 2.59
6336 6879 3.552294 GCTTCTAGTGCGGTTGTCTTATC 59.448 47.826 0.00 0.00 0.00 1.75
6381 6924 6.491745 TGTTGTCTGCCAGGTTATTCATTTTA 59.508 34.615 0.00 0.00 0.00 1.52
6390 6933 3.073209 TGGTTATGTTGTCTGCCAGGTTA 59.927 43.478 0.00 0.00 0.00 2.85
6394 6937 3.346315 TCATGGTTATGTTGTCTGCCAG 58.654 45.455 0.00 0.00 35.73 4.85
6432 6975 9.619316 GTTTTGTAGTTTGTATTATCATGCACA 57.381 29.630 0.00 0.00 0.00 4.57
6447 6990 6.151144 AGTGCTTCAAGTCTGTTTTGTAGTTT 59.849 34.615 0.00 0.00 0.00 2.66
6459 7002 3.507622 GGGCATTTAAGTGCTTCAAGTCT 59.492 43.478 20.63 0.00 44.45 3.24
6462 7005 4.525912 AAGGGCATTTAAGTGCTTCAAG 57.474 40.909 20.63 0.00 44.45 3.02
6483 7027 6.704056 AAAAGAACTAGAGGGAATCCAGAA 57.296 37.500 0.09 0.00 34.83 3.02
6484 7028 6.704056 AAAAAGAACTAGAGGGAATCCAGA 57.296 37.500 0.09 0.00 34.83 3.86
6488 7032 9.483916 GCTAGATAAAAAGAACTAGAGGGAATC 57.516 37.037 0.00 0.00 35.69 2.52
6496 7040 8.940952 ACTTTGCTGCTAGATAAAAAGAACTAG 58.059 33.333 11.72 0.00 36.44 2.57
6535 7079 7.056635 ACAACCTTTGATCTCCGATCAAATAT 58.943 34.615 24.13 15.96 44.14 1.28
6540 7084 3.981071 ACAACCTTTGATCTCCGATCA 57.019 42.857 2.59 2.59 0.00 2.92
6564 7108 2.171448 ACTTGATGGTATCAGTGCTCCC 59.829 50.000 0.00 0.00 40.94 4.30
6571 7115 9.770097 ACAACATAAGATACTTGATGGTATCAG 57.230 33.333 14.38 6.29 46.08 2.90
6616 7160 2.284288 CGAAACTCGCGTGCAACTATAC 60.284 50.000 5.77 0.00 31.14 1.47
6642 7188 9.113838 AGTCTCTATTATTTGCAAGGTAATGTG 57.886 33.333 20.61 15.46 0.00 3.21
6647 7193 7.065803 GCAACAGTCTCTATTATTTGCAAGGTA 59.934 37.037 0.00 0.00 38.18 3.08
6658 7204 5.576447 TCGTGATGCAACAGTCTCTATTA 57.424 39.130 0.00 0.00 0.00 0.98
6707 7253 8.742777 CCCTGAATTTGATACTCTTTTCATTGA 58.257 33.333 0.00 0.00 0.00 2.57
6722 7268 3.874383 TCACAAGACCCCTGAATTTGA 57.126 42.857 0.00 0.00 0.00 2.69
6732 7278 1.639298 GCGACTGCATCACAAGACCC 61.639 60.000 0.00 0.00 42.15 4.46
6747 7293 7.061094 CACCATCATTCTTTTTCTTTAAGCGAC 59.939 37.037 0.00 0.00 0.00 5.19
6750 7296 6.591448 CCCACCATCATTCTTTTTCTTTAAGC 59.409 38.462 0.00 0.00 0.00 3.09
6756 7302 3.782992 AGCCCACCATCATTCTTTTTCT 58.217 40.909 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.