Multiple sequence alignment - TraesCS5D01G179300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G179300 chr5D 100.000 2498 0 0 1 2498 278440355 278442852 0.000000e+00 4614.0
1 TraesCS5D01G179300 chr5D 90.741 1998 108 32 512 2498 278357881 278359812 0.000000e+00 2593.0
2 TraesCS5D01G179300 chr5D 93.469 245 13 2 1 243 278351823 278352066 6.570000e-96 361.0
3 TraesCS5D01G179300 chr5D 90.357 280 11 7 235 514 278357479 278357742 1.100000e-93 353.0
4 TraesCS5D01G179300 chr5D 100.000 28 0 0 1772 1799 6385594 6385621 4.000000e-03 52.8
5 TraesCS5D01G179300 chr5A 88.721 2119 102 47 161 2260 370107865 370105865 0.000000e+00 2462.0
6 TraesCS5D01G179300 chr5A 87.975 158 18 1 1 157 600357375 600357532 4.240000e-43 185.0
7 TraesCS5D01G179300 chr5A 92.857 42 3 0 2272 2313 370105870 370105829 7.460000e-06 62.1
8 TraesCS5D01G179300 chr5A 100.000 28 0 0 1772 1799 3286476 3286449 4.000000e-03 52.8
9 TraesCS5D01G179300 chr5B 85.180 2328 189 70 215 2490 316530966 316533189 0.000000e+00 2244.0
10 TraesCS5D01G179300 chr5B 88.854 1588 92 40 388 1962 316561032 316562547 0.000000e+00 1873.0
11 TraesCS5D01G179300 chr5B 90.094 212 14 4 1 212 316530674 316530878 4.100000e-68 268.0
12 TraesCS5D01G179300 chr5B 85.714 217 25 3 1 212 316558638 316558853 8.990000e-55 224.0
13 TraesCS5D01G179300 chr5B 88.701 177 19 1 215 391 316558941 316559116 5.410000e-52 215.0
14 TraesCS5D01G179300 chr5B 77.391 115 15 9 1772 1883 545190513 545190407 9.650000e-05 58.4
15 TraesCS5D01G179300 chr3D 90.741 162 13 2 1 160 90830708 90830547 5.410000e-52 215.0
16 TraesCS5D01G179300 chr6D 89.873 158 15 1 1 157 292863549 292863706 4.210000e-48 202.0
17 TraesCS5D01G179300 chr2D 89.873 158 15 1 1 157 588178074 588178231 4.210000e-48 202.0
18 TraesCS5D01G179300 chr2B 92.143 140 10 1 1 139 487238474 487238335 1.960000e-46 196.0
19 TraesCS5D01G179300 chr3B 87.654 162 15 3 1 157 235971801 235971962 1.530000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G179300 chr5D 278440355 278442852 2497 False 4614.000000 4614 100.000000 1 2498 1 chr5D.!!$F3 2497
1 TraesCS5D01G179300 chr5D 278357479 278359812 2333 False 1473.000000 2593 90.549000 235 2498 2 chr5D.!!$F4 2263
2 TraesCS5D01G179300 chr5A 370105829 370107865 2036 True 1262.050000 2462 90.789000 161 2313 2 chr5A.!!$R2 2152
3 TraesCS5D01G179300 chr5B 316530674 316533189 2515 False 1256.000000 2244 87.637000 1 2490 2 chr5B.!!$F1 2489
4 TraesCS5D01G179300 chr5B 316558638 316562547 3909 False 770.666667 1873 87.756333 1 1962 3 chr5B.!!$F2 1961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 452 0.164647 GCACATGCGTCTGTTCACTC 59.835 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 4342 0.24445 TGACACGACGATAACCCCAC 59.756 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 89 4.772231 TTAGCCCGGTCGCCTCCT 62.772 66.667 0.00 0.00 0.00 3.69
94 97 2.413765 GTCGCCTCCTCCGATGAC 59.586 66.667 0.00 0.00 37.04 3.06
95 98 2.044352 TCGCCTCCTCCGATGACA 60.044 61.111 0.00 0.00 0.00 3.58
100 103 1.459455 CCTCCTCCGATGACAGCGAT 61.459 60.000 15.87 0.00 0.00 4.58
106 109 2.796193 CGATGACAGCGATGGGGGA 61.796 63.158 7.46 0.00 0.00 4.81
114 117 3.252284 CGATGGGGGATGGAGGGG 61.252 72.222 0.00 0.00 0.00 4.79
122 125 3.493303 GATGGAGGGGTGGGGCTC 61.493 72.222 0.00 0.00 0.00 4.70
258 350 5.411053 GCATCTTTTCACTAGTCTTGCTCTT 59.589 40.000 0.00 0.00 0.00 2.85
305 397 1.312884 AATCAGAGATTTGGGGCCCT 58.687 50.000 25.93 2.38 0.00 5.19
330 422 0.385751 CGACACCTCACTGTCACTGT 59.614 55.000 0.63 0.00 40.67 3.55
360 452 0.164647 GCACATGCGTCTGTTCACTC 59.835 55.000 0.00 0.00 0.00 3.51
437 2448 6.209192 TGCAATCACCAGACAAATTACTGAAT 59.791 34.615 0.00 0.00 36.38 2.57
516 2668 5.389516 GCCACGAACATCTTACAAGTTACAG 60.390 44.000 0.00 0.00 0.00 2.74
536 2688 6.360370 ACAGTCACATCATATGTATACCCC 57.640 41.667 1.90 0.00 42.70 4.95
550 2702 6.147437 TGTATACCCCTTTTGTTGGAGATT 57.853 37.500 0.00 0.00 0.00 2.40
551 2703 7.273457 TGTATACCCCTTTTGTTGGAGATTA 57.727 36.000 0.00 0.00 0.00 1.75
1499 3666 2.832129 ACATCTACGTCAACCCATGAGT 59.168 45.455 0.00 0.00 39.19 3.41
1596 3768 4.028648 CGCGTGGTCGTTCAAAATAAAATC 59.971 41.667 0.00 0.00 39.49 2.17
1630 3803 1.788308 GTGTTACAAAGCGCTACGTGA 59.212 47.619 12.05 4.72 0.00 4.35
1651 3827 9.737427 ACGTGAATGTTTGTGATATTGTTTTTA 57.263 25.926 0.00 0.00 0.00 1.52
1696 3872 4.544001 TTTTTCGCGGGTGAGTGT 57.456 50.000 6.13 0.00 0.00 3.55
1697 3873 2.313267 TTTTTCGCGGGTGAGTGTC 58.687 52.632 6.13 0.00 0.00 3.67
1698 3874 0.462225 TTTTTCGCGGGTGAGTGTCA 60.462 50.000 6.13 0.00 0.00 3.58
1699 3875 0.250124 TTTTCGCGGGTGAGTGTCAT 60.250 50.000 6.13 0.00 0.00 3.06
1700 3876 0.250124 TTTCGCGGGTGAGTGTCATT 60.250 50.000 6.13 0.00 0.00 2.57
1701 3877 0.604073 TTCGCGGGTGAGTGTCATTA 59.396 50.000 6.13 0.00 0.00 1.90
1702 3878 0.821517 TCGCGGGTGAGTGTCATTAT 59.178 50.000 6.13 0.00 0.00 1.28
1705 3881 2.418628 CGCGGGTGAGTGTCATTATTTT 59.581 45.455 0.00 0.00 0.00 1.82
1885 4064 9.246670 TGTTTCATCCAATCAAATCTCATTACT 57.753 29.630 0.00 0.00 0.00 2.24
1888 4067 9.690913 TTCATCCAATCAAATCTCATTACTTCT 57.309 29.630 0.00 0.00 0.00 2.85
1947 4131 2.485582 CGCGAGAGTGACATCCGT 59.514 61.111 0.00 0.00 46.66 4.69
1963 4147 0.812412 CCGTGTTGTCCGTTTCACCT 60.812 55.000 0.00 0.00 0.00 4.00
1973 4166 2.202946 TTTCACCTGCGCGTCACA 60.203 55.556 8.43 0.00 0.00 3.58
1974 4167 1.596752 TTTCACCTGCGCGTCACAT 60.597 52.632 8.43 0.00 0.00 3.21
1997 4190 1.142097 GTCTCCTAGGCACGCTTCC 59.858 63.158 2.96 0.00 0.00 3.46
2040 4238 2.345991 CCGGCTGGTTTTCCTCGA 59.654 61.111 2.29 0.00 41.38 4.04
2071 4270 2.038426 ACTCGGTGACATGATTGTGGAA 59.962 45.455 0.00 0.00 35.79 3.53
2073 4272 1.468520 CGGTGACATGATTGTGGAACC 59.531 52.381 0.00 0.00 35.79 3.62
2088 4306 7.938140 TTGTGGAACCTATTTCTATTCCTTG 57.062 36.000 3.70 0.00 41.11 3.61
2097 4315 2.974285 TCTATTCCTTGGGGTGGGTA 57.026 50.000 0.00 0.00 0.00 3.69
2106 4324 2.219164 GGGGTGGGTAGTGGACGTT 61.219 63.158 0.00 0.00 0.00 3.99
2124 4342 4.052518 CCTGGGGCCACCTTCCTG 62.053 72.222 0.20 0.00 41.11 3.86
2125 4343 3.260100 CTGGGGCCACCTTCCTGT 61.260 66.667 0.20 0.00 41.11 4.00
2126 4344 3.574074 CTGGGGCCACCTTCCTGTG 62.574 68.421 0.20 0.00 41.11 3.66
2134 4352 2.420058 CACCTTCCTGTGGGGTTATC 57.580 55.000 0.00 0.00 36.25 1.75
2135 4353 0.909623 ACCTTCCTGTGGGGTTATCG 59.090 55.000 0.00 0.00 36.25 2.92
2136 4354 0.909623 CCTTCCTGTGGGGTTATCGT 59.090 55.000 0.00 0.00 36.25 3.73
2137 4355 1.134491 CCTTCCTGTGGGGTTATCGTC 60.134 57.143 0.00 0.00 36.25 4.20
2138 4356 0.533491 TTCCTGTGGGGTTATCGTCG 59.467 55.000 0.00 0.00 36.25 5.12
2139 4357 0.612732 TCCTGTGGGGTTATCGTCGT 60.613 55.000 0.00 0.00 36.25 4.34
2140 4358 0.459585 CCTGTGGGGTTATCGTCGTG 60.460 60.000 0.00 0.00 0.00 4.35
2141 4359 0.245539 CTGTGGGGTTATCGTCGTGT 59.754 55.000 0.00 0.00 0.00 4.49
2142 4360 0.244450 TGTGGGGTTATCGTCGTGTC 59.756 55.000 0.00 0.00 0.00 3.67
2143 4361 0.244450 GTGGGGTTATCGTCGTGTCA 59.756 55.000 0.00 0.00 0.00 3.58
2180 4398 1.825191 CAGTGGGCGCCATATTGCT 60.825 57.895 30.85 12.95 35.28 3.91
2181 4399 1.825191 AGTGGGCGCCATATTGCTG 60.825 57.895 30.85 0.00 35.28 4.41
2182 4400 3.218470 TGGGCGCCATATTGCTGC 61.218 61.111 30.85 7.78 0.00 5.25
2187 4405 2.827051 CGCCATATTGCTGCGCACT 61.827 57.895 5.66 1.22 41.95 4.40
2188 4406 1.298863 GCCATATTGCTGCGCACTG 60.299 57.895 5.66 0.00 38.71 3.66
2189 4407 1.717791 GCCATATTGCTGCGCACTGA 61.718 55.000 5.66 0.00 38.71 3.41
2191 4409 0.316772 CATATTGCTGCGCACTGAGC 60.317 55.000 5.66 9.63 38.71 4.26
2192 4410 1.442526 ATATTGCTGCGCACTGAGCC 61.443 55.000 5.66 0.00 38.71 4.70
2232 4450 2.280797 GCCAGGTTGTCAGCGTCA 60.281 61.111 0.00 0.00 0.00 4.35
2321 4539 3.706373 TTCACCTCCTGCCGAGCC 61.706 66.667 0.00 0.00 37.27 4.70
2330 4548 1.586154 CCTGCCGAGCCATTTCGTTT 61.586 55.000 0.00 0.00 38.88 3.60
2331 4549 0.240945 CTGCCGAGCCATTTCGTTTT 59.759 50.000 0.00 0.00 38.88 2.43
2341 4559 1.000717 CATTTCGTTTTGCCCGACCTT 60.001 47.619 0.00 0.00 33.41 3.50
2347 4565 0.183014 TTTTGCCCGACCTTGGTACA 59.817 50.000 0.00 0.00 0.00 2.90
2348 4566 0.402504 TTTGCCCGACCTTGGTACAT 59.597 50.000 0.00 0.00 39.30 2.29
2374 4592 2.347150 GGTGCAACTTTGTTTGTTTCCG 59.653 45.455 0.00 0.00 36.74 4.30
2382 4600 0.741915 TGTTTGTTTCCGGCTTGGTC 59.258 50.000 0.00 0.00 39.52 4.02
2388 4606 0.464013 TTTCCGGCTTGGTCGTTTCA 60.464 50.000 0.00 0.00 39.52 2.69
2393 4611 0.872388 GGCTTGGTCGTTTCATTCGT 59.128 50.000 0.00 0.00 0.00 3.85
2405 4623 2.046892 ATTCGTGCGAGCTGGCTT 60.047 55.556 21.84 0.00 0.00 4.35
2407 4625 0.391130 ATTCGTGCGAGCTGGCTTAA 60.391 50.000 21.84 12.81 0.00 1.85
2411 4629 0.955919 GTGCGAGCTGGCTTAAGGTT 60.956 55.000 21.84 0.00 0.00 3.50
2419 4637 2.608016 GCTGGCTTAAGGTTTGAGCAAC 60.608 50.000 4.29 0.00 38.14 4.17
2421 4639 1.877443 GGCTTAAGGTTTGAGCAACGA 59.123 47.619 4.29 0.00 38.14 3.85
2444 4662 4.329545 GTCGTCAAGGCTGCCCCA 62.330 66.667 16.57 0.00 35.39 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 89 2.796193 CCCCATCGCTGTCATCGGA 61.796 63.158 0.00 0.00 0.00 4.55
87 90 2.280389 CCCCATCGCTGTCATCGG 60.280 66.667 0.00 0.00 0.00 4.18
94 97 2.429058 CTCCATCCCCCATCGCTG 59.571 66.667 0.00 0.00 0.00 5.18
95 98 2.851102 CCTCCATCCCCCATCGCT 60.851 66.667 0.00 0.00 0.00 4.93
100 103 4.777546 CCACCCCTCCATCCCCCA 62.778 72.222 0.00 0.00 0.00 4.96
149 155 1.869574 CATGGACTCGAGCGACACG 60.870 63.158 13.61 0.00 0.00 4.49
150 156 1.517257 CCATGGACTCGAGCGACAC 60.517 63.158 13.61 0.00 0.00 3.67
157 163 0.327924 AATTGTGGCCATGGACTCGA 59.672 50.000 21.02 16.27 0.00 4.04
258 350 3.629855 TGCTGTTTTCTGGATCGAAACAA 59.370 39.130 12.94 2.18 32.99 2.83
305 397 1.227527 CAGTGAGGTGTCGTGCCAA 60.228 57.895 0.00 0.00 0.00 4.52
360 452 3.617531 GCTATTGTACCATGGGAGGATCG 60.618 52.174 18.09 1.78 34.37 3.69
437 2448 4.036498 GCGAGTACAGTTGCTCCTAATCTA 59.964 45.833 0.00 0.00 30.95 1.98
516 2668 7.719633 ACAAAAGGGGTATACATATGATGTGAC 59.280 37.037 10.38 0.05 44.60 3.67
550 2702 9.791801 ACAGCCATACATCATTTACATGTTATA 57.208 29.630 2.30 0.00 35.95 0.98
551 2703 8.696043 ACAGCCATACATCATTTACATGTTAT 57.304 30.769 2.30 0.00 35.95 1.89
597 2751 7.434897 GTCTTGTCAGTATTGTCTCTCATGATC 59.565 40.741 0.00 0.00 0.00 2.92
808 2971 0.726827 TTGTCGATCCAATTGCGCTC 59.273 50.000 9.73 0.00 0.00 5.03
1596 3768 2.421775 TGTAACACAAGGTGCAACACTG 59.578 45.455 3.64 2.96 39.98 3.66
1680 3856 0.250124 ATGACACTCACCCGCGAAAA 60.250 50.000 8.23 0.00 0.00 2.29
1683 3859 0.821517 ATAATGACACTCACCCGCGA 59.178 50.000 8.23 0.00 0.00 5.87
1684 3860 1.651987 AATAATGACACTCACCCGCG 58.348 50.000 0.00 0.00 0.00 6.46
1685 3861 4.165779 CAAAAATAATGACACTCACCCGC 58.834 43.478 0.00 0.00 0.00 6.13
1687 3863 5.925969 CCAACAAAAATAATGACACTCACCC 59.074 40.000 0.00 0.00 0.00 4.61
1688 3864 6.512297 ACCAACAAAAATAATGACACTCACC 58.488 36.000 0.00 0.00 0.00 4.02
1689 3865 7.425606 AGACCAACAAAAATAATGACACTCAC 58.574 34.615 0.00 0.00 0.00 3.51
1690 3866 7.581213 AGACCAACAAAAATAATGACACTCA 57.419 32.000 0.00 0.00 0.00 3.41
1691 3867 9.612620 CTTAGACCAACAAAAATAATGACACTC 57.387 33.333 0.00 0.00 0.00 3.51
1692 3868 9.131791 ACTTAGACCAACAAAAATAATGACACT 57.868 29.630 0.00 0.00 0.00 3.55
1693 3869 9.180678 CACTTAGACCAACAAAAATAATGACAC 57.819 33.333 0.00 0.00 0.00 3.67
1694 3870 7.865385 GCACTTAGACCAACAAAAATAATGACA 59.135 33.333 0.00 0.00 0.00 3.58
1695 3871 7.865385 TGCACTTAGACCAACAAAAATAATGAC 59.135 33.333 0.00 0.00 0.00 3.06
1696 3872 7.946207 TGCACTTAGACCAACAAAAATAATGA 58.054 30.769 0.00 0.00 0.00 2.57
1697 3873 8.487176 GTTGCACTTAGACCAACAAAAATAATG 58.513 33.333 12.17 0.00 38.85 1.90
1698 3874 7.381139 CGTTGCACTTAGACCAACAAAAATAAT 59.619 33.333 15.40 0.00 38.92 1.28
1699 3875 6.693545 CGTTGCACTTAGACCAACAAAAATAA 59.306 34.615 15.40 0.00 38.92 1.40
1700 3876 6.202937 CGTTGCACTTAGACCAACAAAAATA 58.797 36.000 15.40 0.00 38.92 1.40
1701 3877 5.040635 CGTTGCACTTAGACCAACAAAAAT 58.959 37.500 15.40 0.00 38.92 1.82
1702 3878 4.416620 CGTTGCACTTAGACCAACAAAAA 58.583 39.130 15.40 0.00 38.92 1.94
1705 3881 1.944024 CCGTTGCACTTAGACCAACAA 59.056 47.619 15.40 0.00 38.92 2.83
1848 4027 7.709947 TGATTGGATGAAACATGAATTAGAGC 58.290 34.615 0.00 0.00 0.00 4.09
1883 4062 9.134055 GTACTCACCATCCTTTATACTAGAAGT 57.866 37.037 0.00 0.00 0.00 3.01
1885 4064 8.474710 GGTACTCACCATCCTTTATACTAGAA 57.525 38.462 0.00 0.00 45.04 2.10
1947 4131 1.433053 CGCAGGTGAAACGGACAACA 61.433 55.000 0.00 0.00 38.12 3.33
1963 4147 2.126110 ACATCGATGTGACGCGCA 60.126 55.556 29.49 1.71 40.03 6.09
1973 4166 0.955178 CGTGCCTAGGAGACATCGAT 59.045 55.000 14.75 0.00 0.00 3.59
1974 4167 1.725557 GCGTGCCTAGGAGACATCGA 61.726 60.000 14.75 0.00 0.00 3.59
2040 4238 0.608640 GTCACCGAGTTGTGGATCCT 59.391 55.000 14.23 0.00 36.87 3.24
2071 4270 4.168088 CCACCCCAAGGAATAGAAATAGGT 59.832 45.833 0.00 0.00 36.73 3.08
2073 4272 4.168088 ACCCACCCCAAGGAATAGAAATAG 59.832 45.833 0.00 0.00 36.73 1.73
2088 4306 2.176314 GAACGTCCACTACCCACCCC 62.176 65.000 0.00 0.00 0.00 4.95
2097 4315 3.637273 GCCCCAGGAACGTCCACT 61.637 66.667 6.78 0.00 39.61 4.00
2106 4324 4.285790 AGGAAGGTGGCCCCAGGA 62.286 66.667 12.24 0.00 34.66 3.86
2124 4342 0.244450 TGACACGACGATAACCCCAC 59.756 55.000 0.00 0.00 0.00 4.61
2125 4343 0.528924 CTGACACGACGATAACCCCA 59.471 55.000 0.00 0.00 0.00 4.96
2126 4344 0.529378 ACTGACACGACGATAACCCC 59.471 55.000 0.00 0.00 0.00 4.95
2127 4345 1.625616 CACTGACACGACGATAACCC 58.374 55.000 0.00 0.00 0.00 4.11
2128 4346 1.625616 CCACTGACACGACGATAACC 58.374 55.000 0.00 0.00 0.00 2.85
2129 4347 1.625616 CCCACTGACACGACGATAAC 58.374 55.000 0.00 0.00 0.00 1.89
2130 4348 0.528924 CCCCACTGACACGACGATAA 59.471 55.000 0.00 0.00 0.00 1.75
2131 4349 0.609957 ACCCCACTGACACGACGATA 60.610 55.000 0.00 0.00 0.00 2.92
2132 4350 1.469335 AACCCCACTGACACGACGAT 61.469 55.000 0.00 0.00 0.00 3.73
2133 4351 0.822944 TAACCCCACTGACACGACGA 60.823 55.000 0.00 0.00 0.00 4.20
2134 4352 0.245539 ATAACCCCACTGACACGACG 59.754 55.000 0.00 0.00 0.00 5.12
2135 4353 1.734707 CGATAACCCCACTGACACGAC 60.735 57.143 0.00 0.00 0.00 4.34
2136 4354 0.528924 CGATAACCCCACTGACACGA 59.471 55.000 0.00 0.00 0.00 4.35
2137 4355 0.245539 ACGATAACCCCACTGACACG 59.754 55.000 0.00 0.00 0.00 4.49
2138 4356 1.274167 TGACGATAACCCCACTGACAC 59.726 52.381 0.00 0.00 0.00 3.67
2139 4357 1.634960 TGACGATAACCCCACTGACA 58.365 50.000 0.00 0.00 0.00 3.58
2140 4358 2.093658 ACATGACGATAACCCCACTGAC 60.094 50.000 0.00 0.00 0.00 3.51
2141 4359 2.167693 GACATGACGATAACCCCACTGA 59.832 50.000 0.00 0.00 0.00 3.41
2142 4360 2.093711 TGACATGACGATAACCCCACTG 60.094 50.000 0.00 0.00 0.00 3.66
2143 4361 2.168521 CTGACATGACGATAACCCCACT 59.831 50.000 0.00 0.00 0.00 4.00
2321 4539 0.596082 AGGTCGGGCAAAACGAAATG 59.404 50.000 0.00 0.00 42.55 2.32
2322 4540 1.000717 CAAGGTCGGGCAAAACGAAAT 60.001 47.619 0.00 0.00 42.55 2.17
2330 4548 0.322098 CATGTACCAAGGTCGGGCAA 60.322 55.000 0.00 0.00 0.00 4.52
2331 4549 1.298340 CATGTACCAAGGTCGGGCA 59.702 57.895 0.00 0.00 0.00 5.36
2359 4577 2.418060 CCAAGCCGGAAACAAACAAAGT 60.418 45.455 5.05 0.00 36.56 2.66
2361 4579 1.550976 ACCAAGCCGGAAACAAACAAA 59.449 42.857 5.05 0.00 38.63 2.83
2374 4592 0.872388 ACGAATGAAACGACCAAGCC 59.128 50.000 0.00 0.00 34.70 4.35
2382 4600 0.517132 CAGCTCGCACGAATGAAACG 60.517 55.000 0.00 0.00 0.00 3.60
2388 4606 0.391130 TTAAGCCAGCTCGCACGAAT 60.391 50.000 5.98 0.00 0.00 3.34
2393 4611 0.250727 AAACCTTAAGCCAGCTCGCA 60.251 50.000 5.98 0.00 0.00 5.10
2405 4623 2.288458 CGGTTTCGTTGCTCAAACCTTA 59.712 45.455 11.15 0.00 46.51 2.69
2407 4625 0.661020 CGGTTTCGTTGCTCAAACCT 59.339 50.000 11.15 0.00 46.51 3.50
2411 4629 1.492319 CGACCGGTTTCGTTGCTCAA 61.492 55.000 9.42 0.00 34.16 3.02
2419 4637 2.664436 GCCTTGACGACCGGTTTCG 61.664 63.158 9.42 11.98 44.87 3.46
2421 4639 1.597027 CAGCCTTGACGACCGGTTT 60.597 57.895 9.42 0.00 0.00 3.27
2444 4662 0.896019 CGCCTCGTCTATCCCCTCAT 60.896 60.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.