Multiple sequence alignment - TraesCS5D01G179000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G179000 | chr5D | 100.000 | 5253 | 0 | 0 | 1 | 5253 | 278278465 | 278283717 | 0.000000e+00 | 9701.0 |
1 | TraesCS5D01G179000 | chr5D | 90.385 | 260 | 23 | 1 | 1854 | 2113 | 278280187 | 278280444 | 1.810000e-89 | 340.0 |
2 | TraesCS5D01G179000 | chr5D | 90.385 | 260 | 23 | 1 | 1723 | 1980 | 278280318 | 278280577 | 1.810000e-89 | 340.0 |
3 | TraesCS5D01G179000 | chr5D | 87.786 | 131 | 13 | 2 | 1983 | 2113 | 278280184 | 278280311 | 3.280000e-32 | 150.0 |
4 | TraesCS5D01G179000 | chr5D | 87.786 | 131 | 13 | 2 | 1720 | 1847 | 278280447 | 278280577 | 3.280000e-32 | 150.0 |
5 | TraesCS5D01G179000 | chr5B | 95.285 | 5133 | 160 | 35 | 1 | 5088 | 316368123 | 316373218 | 0.000000e+00 | 8063.0 |
6 | TraesCS5D01G179000 | chr5B | 88.593 | 263 | 23 | 2 | 1851 | 2113 | 316369842 | 316370097 | 3.950000e-81 | 313.0 |
7 | TraesCS5D01G179000 | chr5B | 87.266 | 267 | 23 | 4 | 1720 | 1980 | 316369972 | 316370233 | 1.430000e-75 | 294.0 |
8 | TraesCS5D01G179000 | chr5B | 88.618 | 123 | 12 | 1 | 1982 | 2104 | 316369840 | 316369960 | 1.180000e-31 | 148.0 |
9 | TraesCS5D01G179000 | chr5B | 83.544 | 158 | 24 | 2 | 5091 | 5247 | 340615302 | 340615458 | 4.240000e-31 | 147.0 |
10 | TraesCS5D01G179000 | chr5A | 94.611 | 5066 | 156 | 57 | 1 | 4997 | 367598046 | 367603063 | 0.000000e+00 | 7734.0 |
11 | TraesCS5D01G179000 | chr5A | 90.875 | 263 | 22 | 1 | 1851 | 2113 | 367599760 | 367600020 | 8.370000e-93 | 351.0 |
12 | TraesCS5D01G179000 | chr5A | 90.698 | 258 | 22 | 1 | 1725 | 1980 | 367599896 | 367600153 | 5.040000e-90 | 342.0 |
13 | TraesCS5D01G179000 | chr5A | 87.879 | 132 | 14 | 1 | 1982 | 2113 | 367599758 | 367599887 | 2.530000e-33 | 154.0 |
14 | TraesCS5D01G179000 | chr5A | 87.786 | 131 | 13 | 2 | 1720 | 1847 | 367600023 | 367600153 | 3.280000e-32 | 150.0 |
15 | TraesCS5D01G179000 | chr7D | 86.986 | 146 | 18 | 1 | 5091 | 5236 | 155265112 | 155265256 | 4.210000e-36 | 163.0 |
16 | TraesCS5D01G179000 | chr7D | 82.822 | 163 | 25 | 2 | 5091 | 5253 | 540626757 | 540626598 | 5.480000e-30 | 143.0 |
17 | TraesCS5D01G179000 | chr7D | 81.875 | 160 | 26 | 3 | 5091 | 5249 | 11679942 | 11680099 | 1.190000e-26 | 132.0 |
18 | TraesCS5D01G179000 | chr4B | 81.731 | 208 | 25 | 8 | 4688 | 4882 | 237949932 | 237949725 | 1.510000e-35 | 161.0 |
19 | TraesCS5D01G179000 | chr4D | 84.049 | 163 | 25 | 1 | 5091 | 5253 | 327379518 | 327379679 | 7.040000e-34 | 156.0 |
20 | TraesCS5D01G179000 | chr2A | 78.099 | 242 | 39 | 9 | 4688 | 4915 | 161631232 | 161631473 | 1.970000e-29 | 141.0 |
21 | TraesCS5D01G179000 | chr2A | 78.099 | 242 | 37 | 10 | 4688 | 4914 | 379152244 | 379152484 | 7.090000e-29 | 139.0 |
22 | TraesCS5D01G179000 | chr2A | 76.613 | 248 | 43 | 10 | 4683 | 4916 | 660500108 | 660499862 | 7.140000e-24 | 122.0 |
23 | TraesCS5D01G179000 | chr3B | 82.609 | 161 | 20 | 7 | 5093 | 5248 | 616887695 | 616887538 | 9.180000e-28 | 135.0 |
24 | TraesCS5D01G179000 | chr1D | 83.007 | 153 | 23 | 3 | 5091 | 5242 | 475955264 | 475955114 | 9.180000e-28 | 135.0 |
25 | TraesCS5D01G179000 | chr1D | 87.356 | 87 | 10 | 1 | 4808 | 4893 | 7983522 | 7983436 | 1.200000e-16 | 99.0 |
26 | TraesCS5D01G179000 | chr4A | 81.595 | 163 | 29 | 1 | 5091 | 5253 | 143701499 | 143701338 | 3.300000e-27 | 134.0 |
27 | TraesCS5D01G179000 | chr2D | 81.707 | 164 | 27 | 3 | 5091 | 5253 | 134636438 | 134636599 | 3.300000e-27 | 134.0 |
28 | TraesCS5D01G179000 | chr2B | 77.778 | 225 | 36 | 9 | 4704 | 4915 | 755063241 | 755063018 | 5.520000e-25 | 126.0 |
29 | TraesCS5D01G179000 | chr2B | 80.672 | 119 | 22 | 1 | 4797 | 4914 | 357919814 | 357919932 | 2.010000e-14 | 91.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G179000 | chr5D | 278278465 | 278283717 | 5252 | False | 2136.2 | 9701 | 91.2684 | 1 | 5253 | 5 | chr5D.!!$F1 | 5252 |
1 | TraesCS5D01G179000 | chr5B | 316368123 | 316373218 | 5095 | False | 2204.5 | 8063 | 89.9405 | 1 | 5088 | 4 | chr5B.!!$F2 | 5087 |
2 | TraesCS5D01G179000 | chr5A | 367598046 | 367603063 | 5017 | False | 1746.2 | 7734 | 90.3698 | 1 | 4997 | 5 | chr5A.!!$F1 | 4996 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
429 | 432 | 0.040692 | GTCGGTTTCGGTTTGCTTCC | 60.041 | 55.000 | 0.00 | 0.00 | 36.95 | 3.46 | F |
481 | 485 | 0.324645 | CCTGCCTACAAATTGGGCCT | 60.325 | 55.000 | 4.53 | 0.00 | 44.71 | 5.19 | F |
482 | 486 | 0.819582 | CTGCCTACAAATTGGGCCTG | 59.180 | 55.000 | 4.53 | 0.00 | 44.71 | 4.85 | F |
1892 | 1925 | 1.134250 | TGCACAGCACCAGTGAAACTA | 60.134 | 47.619 | 0.99 | 0.00 | 38.58 | 2.24 | F |
2432 | 2469 | 0.937304 | CCATTCAAGTATGACGGCCG | 59.063 | 55.000 | 26.86 | 26.86 | 34.61 | 6.13 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1329 | 1356 | 0.314935 | CAATGGACTTGTGCCGCTTT | 59.685 | 50.000 | 0.00 | 0.0 | 0.0 | 3.51 | R |
1892 | 1925 | 2.658285 | TGCATAGCTAGGCAAAAGCAT | 58.342 | 42.857 | 29.27 | 0.0 | 40.3 | 3.79 | R |
2376 | 2413 | 3.004419 | TCTTCTGGCGTGTAATATCCTCG | 59.996 | 47.826 | 0.00 | 0.0 | 0.0 | 4.63 | R |
2964 | 3007 | 1.089112 | GTAACATGCGTACCCAACCC | 58.911 | 55.000 | 0.00 | 0.0 | 0.0 | 4.11 | R |
4271 | 4328 | 1.273759 | GGTTTCTTACGTCTCCCCCT | 58.726 | 55.000 | 0.00 | 0.0 | 0.0 | 4.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
61 | 62 | 2.591715 | GGCCGGCAGCGTGATAAT | 60.592 | 61.111 | 30.85 | 0.00 | 45.17 | 1.28 |
76 | 77 | 5.123344 | GCGTGATAATGGAAAACCTAGTGTT | 59.877 | 40.000 | 0.00 | 0.00 | 39.43 | 3.32 |
94 | 95 | 3.057946 | GTGTTGGAAGGAAGATTCACAGC | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
127 | 128 | 4.773149 | ACCGACTTCTCCAATCTAAGACTT | 59.227 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
137 | 138 | 7.836685 | TCTCCAATCTAAGACTTCTCAGTGTAT | 59.163 | 37.037 | 0.00 | 0.00 | 31.22 | 2.29 |
145 | 146 | 6.287589 | AGACTTCTCAGTGTATAACCCAAG | 57.712 | 41.667 | 0.00 | 0.00 | 31.22 | 3.61 |
155 | 156 | 1.477553 | ATAACCCAAGTACCTCGCGA | 58.522 | 50.000 | 9.26 | 9.26 | 0.00 | 5.87 |
166 | 167 | 4.521062 | CTCGCGAGCAAGAGGGGG | 62.521 | 72.222 | 25.07 | 0.00 | 0.00 | 5.40 |
171 | 172 | 2.959484 | CGAGCAAGAGGGGGCTTCA | 61.959 | 63.158 | 0.00 | 0.00 | 41.22 | 3.02 |
227 | 228 | 3.427425 | CGACCAAATTCGGCGGCA | 61.427 | 61.111 | 10.53 | 0.00 | 35.26 | 5.69 |
229 | 230 | 1.154035 | GACCAAATTCGGCGGCAAG | 60.154 | 57.895 | 10.53 | 0.00 | 0.00 | 4.01 |
256 | 257 | 1.466186 | AAGGCTGAAGGAAGGGGGT | 60.466 | 57.895 | 0.00 | 0.00 | 0.00 | 4.95 |
259 | 261 | 3.090765 | CTGAAGGAAGGGGGTGGG | 58.909 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
429 | 432 | 0.040692 | GTCGGTTTCGGTTTGCTTCC | 60.041 | 55.000 | 0.00 | 0.00 | 36.95 | 3.46 |
444 | 447 | 3.881019 | TTCCAGACGAGGCGAGGGT | 62.881 | 63.158 | 0.00 | 0.00 | 0.00 | 4.34 |
480 | 484 | 1.960040 | GCCTGCCTACAAATTGGGCC | 61.960 | 60.000 | 10.08 | 0.00 | 44.71 | 5.80 |
481 | 485 | 0.324645 | CCTGCCTACAAATTGGGCCT | 60.325 | 55.000 | 4.53 | 0.00 | 44.71 | 5.19 |
482 | 486 | 0.819582 | CTGCCTACAAATTGGGCCTG | 59.180 | 55.000 | 4.53 | 0.00 | 44.71 | 4.85 |
886 | 910 | 7.606456 | GGAAGTAAATAAATAGGGATGATCGCA | 59.394 | 37.037 | 12.18 | 0.00 | 0.00 | 5.10 |
930 | 954 | 8.013378 | GGTTTATTTCGGTGGATTATATGTTCG | 58.987 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
1088 | 1112 | 1.536662 | AGGACAAGGAGAAGCCCGT | 60.537 | 57.895 | 0.00 | 0.00 | 37.37 | 5.28 |
1089 | 1113 | 1.376037 | GGACAAGGAGAAGCCCGTG | 60.376 | 63.158 | 0.00 | 0.00 | 40.74 | 4.94 |
1152 | 1179 | 2.397413 | CTGTCAACCCCAAGACGCCT | 62.397 | 60.000 | 0.00 | 0.00 | 37.58 | 5.52 |
1173 | 1200 | 2.159184 | TCTTGTCATTGCGGCAAACAAA | 60.159 | 40.909 | 24.79 | 16.56 | 28.21 | 2.83 |
1215 | 1242 | 3.692406 | GGCTCGGTCTTGTCGGGT | 61.692 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
1281 | 1308 | 1.611673 | CCTGTCAAGTTTGGAGCCGAT | 60.612 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
1293 | 1320 | 1.989966 | GAGCCGATGAGGACGACGAA | 61.990 | 60.000 | 0.00 | 0.00 | 45.00 | 3.85 |
1305 | 1332 | 4.223514 | GACGAAGACGACGTTGCT | 57.776 | 55.556 | 0.13 | 0.00 | 43.97 | 3.91 |
1485 | 1512 | 4.563782 | TGGGTAGTAGCTATAAGGGCTTT | 58.436 | 43.478 | 0.00 | 0.00 | 40.74 | 3.51 |
1666 | 1694 | 8.840833 | TTGCAATACTTACAAAGATACACTGA | 57.159 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
1880 | 1913 | 8.774890 | ATAAAATCAATTTACATTGCACAGCA | 57.225 | 26.923 | 0.00 | 0.00 | 39.90 | 4.41 |
1881 | 1914 | 6.470557 | AAATCAATTTACATTGCACAGCAC | 57.529 | 33.333 | 0.00 | 0.00 | 39.90 | 4.40 |
1892 | 1925 | 1.134250 | TGCACAGCACCAGTGAAACTA | 60.134 | 47.619 | 0.99 | 0.00 | 38.58 | 2.24 |
2049 | 2085 | 3.825328 | CTTTTGCCTAGCCATCCATACT | 58.175 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
2376 | 2413 | 2.627699 | TGCCAAAAATGGGAGACAGTTC | 59.372 | 45.455 | 0.00 | 0.00 | 36.16 | 3.01 |
2432 | 2469 | 0.937304 | CCATTCAAGTATGACGGCCG | 59.063 | 55.000 | 26.86 | 26.86 | 34.61 | 6.13 |
2622 | 2659 | 1.888512 | GAGGAAAAGGTGCATGCTCAA | 59.111 | 47.619 | 20.33 | 0.00 | 32.47 | 3.02 |
2658 | 2695 | 2.220824 | GGCTTCAAAAATTGGTTCGTGC | 59.779 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
2799 | 2840 | 5.009410 | ACAGAGAAGCTCATTTGAACAAAGG | 59.991 | 40.000 | 5.73 | 5.73 | 33.32 | 3.11 |
2823 | 2864 | 6.166982 | GTCTAACTATCAAACACCTGCTTCT | 58.833 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2910 | 2953 | 2.300152 | TGAGGTGTCTGTGGATCACTTC | 59.700 | 50.000 | 0.00 | 0.00 | 38.22 | 3.01 |
2934 | 2977 | 4.398247 | CTTTTCTTAAGCTTGCGTGCTAG | 58.602 | 43.478 | 9.86 | 0.00 | 43.24 | 3.42 |
2964 | 3007 | 4.264253 | TGATTGCTTCCACACTATTCCAG | 58.736 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3033 | 3076 | 2.276201 | TCCGCCAGTTAATTGTCATCG | 58.724 | 47.619 | 0.00 | 0.00 | 0.00 | 3.84 |
3116 | 3160 | 9.743581 | TGCATAGAATGGACATATTATGATGTT | 57.256 | 29.630 | 10.62 | 0.59 | 40.18 | 2.71 |
3137 | 3181 | 7.581213 | TGTTCCTTTATGTGAACAACTGAAT | 57.419 | 32.000 | 2.82 | 0.00 | 45.64 | 2.57 |
3141 | 3185 | 7.874940 | TCCTTTATGTGAACAACTGAATTCTG | 58.125 | 34.615 | 10.51 | 10.51 | 0.00 | 3.02 |
3151 | 3195 | 6.808008 | ACAACTGAATTCTGTATCCTGTTG | 57.192 | 37.500 | 17.16 | 12.32 | 36.25 | 3.33 |
3527 | 3578 | 1.005805 | CACATGGGGGACTTCATTCCA | 59.994 | 52.381 | 0.00 | 0.00 | 37.40 | 3.53 |
3700 | 3751 | 7.969314 | TCAAATTGAAAACTAAACACCAAAGC | 58.031 | 30.769 | 0.00 | 0.00 | 0.00 | 3.51 |
3858 | 3910 | 2.401583 | TTACGTCTGCATGCATTCCT | 57.598 | 45.000 | 22.97 | 7.06 | 0.00 | 3.36 |
3912 | 3964 | 6.876257 | GCTCAGTGACCTAATTAATCCTATGG | 59.124 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
3914 | 3966 | 9.090103 | CTCAGTGACCTAATTAATCCTATGGTA | 57.910 | 37.037 | 0.00 | 0.00 | 0.00 | 3.25 |
4183 | 4238 | 7.343833 | AGCCATGACCTTCTTTAATGAATGATT | 59.656 | 33.333 | 11.60 | 0.00 | 0.00 | 2.57 |
4254 | 4311 | 6.180472 | ACCCAAGGAAACAATACTACTGATG | 58.820 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4271 | 4328 | 3.650950 | GCAAGGGGAGGTCAGCCA | 61.651 | 66.667 | 0.00 | 0.00 | 37.19 | 4.75 |
4472 | 4529 | 5.072040 | AGCTTTGCTGTTTTAGTGTTTGT | 57.928 | 34.783 | 0.00 | 0.00 | 37.57 | 2.83 |
4513 | 4570 | 0.390124 | TGTGTCCTACGGTGGTGTTC | 59.610 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4722 | 4781 | 3.014623 | GTGGTTTATTAGGCACCCTCAC | 58.985 | 50.000 | 0.00 | 0.00 | 34.61 | 3.51 |
4791 | 4853 | 5.182487 | ACTGTGTCACAAACATTACACTGA | 58.818 | 37.500 | 7.18 | 0.00 | 41.54 | 3.41 |
4792 | 4854 | 5.822519 | ACTGTGTCACAAACATTACACTGAT | 59.177 | 36.000 | 7.18 | 1.47 | 41.54 | 2.90 |
4917 | 5004 | 2.755655 | ACTCAGACGGATGGAGTAACTG | 59.244 | 50.000 | 0.00 | 0.00 | 39.95 | 3.16 |
4988 | 5079 | 2.355197 | TGGGCACTACGATGAATTGTG | 58.645 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
4999 | 5090 | 7.817478 | ACTACGATGAATTGTGTTGATGACTTA | 59.183 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
5017 | 5108 | 7.055667 | TGACTTACTGAAGAGACAAGTCATT | 57.944 | 36.000 | 10.51 | 0.00 | 42.84 | 2.57 |
5025 | 5116 | 2.307098 | AGAGACAAGTCATTTGAGGGGG | 59.693 | 50.000 | 2.72 | 0.00 | 39.21 | 5.40 |
5088 | 5179 | 5.129815 | TGTTACCTTAACCAGCCTATAGTGG | 59.870 | 44.000 | 7.66 | 7.66 | 37.88 | 4.00 |
5090 | 5181 | 4.887367 | ACCTTAACCAGCCTATAGTGGTA | 58.113 | 43.478 | 13.83 | 1.38 | 46.82 | 3.25 |
5091 | 5182 | 4.900054 | ACCTTAACCAGCCTATAGTGGTAG | 59.100 | 45.833 | 13.83 | 9.40 | 46.82 | 3.18 |
5092 | 5183 | 4.283722 | CCTTAACCAGCCTATAGTGGTAGG | 59.716 | 50.000 | 13.83 | 13.51 | 46.82 | 3.18 |
5093 | 5184 | 3.700863 | AACCAGCCTATAGTGGTAGGA | 57.299 | 47.619 | 13.83 | 0.00 | 46.82 | 2.94 |
5094 | 5185 | 3.246416 | ACCAGCCTATAGTGGTAGGAG | 57.754 | 52.381 | 12.24 | 0.00 | 45.62 | 3.69 |
5095 | 5186 | 1.896465 | CCAGCCTATAGTGGTAGGAGC | 59.104 | 57.143 | 4.21 | 0.00 | 43.27 | 4.70 |
5096 | 5187 | 2.491825 | CCAGCCTATAGTGGTAGGAGCT | 60.492 | 54.545 | 4.21 | 0.00 | 43.27 | 4.09 |
5097 | 5188 | 2.823154 | CAGCCTATAGTGGTAGGAGCTC | 59.177 | 54.545 | 4.71 | 4.71 | 43.27 | 4.09 |
5098 | 5189 | 2.719705 | AGCCTATAGTGGTAGGAGCTCT | 59.280 | 50.000 | 14.64 | 2.18 | 43.27 | 4.09 |
5099 | 5190 | 3.141272 | AGCCTATAGTGGTAGGAGCTCTT | 59.859 | 47.826 | 14.64 | 8.96 | 43.27 | 2.85 |
5100 | 5191 | 3.257127 | GCCTATAGTGGTAGGAGCTCTTG | 59.743 | 52.174 | 14.64 | 0.00 | 43.27 | 3.02 |
5101 | 5192 | 3.829601 | CCTATAGTGGTAGGAGCTCTTGG | 59.170 | 52.174 | 14.64 | 0.00 | 43.27 | 3.61 |
5102 | 5193 | 2.160721 | TAGTGGTAGGAGCTCTTGGG | 57.839 | 55.000 | 14.64 | 0.00 | 0.00 | 4.12 |
5103 | 5194 | 0.117340 | AGTGGTAGGAGCTCTTGGGT | 59.883 | 55.000 | 14.64 | 0.00 | 0.00 | 4.51 |
5104 | 5195 | 0.250513 | GTGGTAGGAGCTCTTGGGTG | 59.749 | 60.000 | 14.64 | 0.00 | 0.00 | 4.61 |
5105 | 5196 | 1.222113 | GGTAGGAGCTCTTGGGTGC | 59.778 | 63.158 | 14.64 | 0.00 | 0.00 | 5.01 |
5106 | 5197 | 1.268283 | GGTAGGAGCTCTTGGGTGCT | 61.268 | 60.000 | 14.64 | 2.54 | 45.61 | 4.40 |
5109 | 5200 | 3.072476 | GAGCTCTTGGGTGCTCCA | 58.928 | 61.111 | 6.43 | 0.85 | 46.93 | 3.86 |
5121 | 5212 | 2.550830 | GTGCTCCACACCCCTATATG | 57.449 | 55.000 | 0.00 | 0.00 | 44.02 | 1.78 |
5122 | 5213 | 2.047061 | GTGCTCCACACCCCTATATGA | 58.953 | 52.381 | 0.00 | 0.00 | 44.02 | 2.15 |
5123 | 5214 | 2.438021 | GTGCTCCACACCCCTATATGAA | 59.562 | 50.000 | 0.00 | 0.00 | 44.02 | 2.57 |
5124 | 5215 | 3.073062 | GTGCTCCACACCCCTATATGAAT | 59.927 | 47.826 | 0.00 | 0.00 | 44.02 | 2.57 |
5125 | 5216 | 4.286032 | GTGCTCCACACCCCTATATGAATA | 59.714 | 45.833 | 0.00 | 0.00 | 44.02 | 1.75 |
5126 | 5217 | 5.045578 | GTGCTCCACACCCCTATATGAATAT | 60.046 | 44.000 | 0.00 | 0.00 | 44.02 | 1.28 |
5127 | 5218 | 5.551583 | TGCTCCACACCCCTATATGAATATT | 59.448 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
5128 | 5219 | 6.733334 | TGCTCCACACCCCTATATGAATATTA | 59.267 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
5129 | 5220 | 7.238723 | TGCTCCACACCCCTATATGAATATTAA | 59.761 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
5130 | 5221 | 8.107095 | GCTCCACACCCCTATATGAATATTAAA | 58.893 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
5132 | 5223 | 9.973661 | TCCACACCCCTATATGAATATTAAATG | 57.026 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
5133 | 5224 | 9.753674 | CCACACCCCTATATGAATATTAAATGT | 57.246 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
5194 | 5285 | 6.834168 | TGAAGATATCAAACCTGGGTTTTC | 57.166 | 37.500 | 14.27 | 9.95 | 44.84 | 2.29 |
5195 | 5286 | 6.310941 | TGAAGATATCAAACCTGGGTTTTCA | 58.689 | 36.000 | 14.27 | 10.99 | 44.84 | 2.69 |
5196 | 5287 | 6.780031 | TGAAGATATCAAACCTGGGTTTTCAA | 59.220 | 34.615 | 14.27 | 4.96 | 44.84 | 2.69 |
5197 | 5288 | 7.454380 | TGAAGATATCAAACCTGGGTTTTCAAT | 59.546 | 33.333 | 14.27 | 10.86 | 44.84 | 2.57 |
5198 | 5289 | 7.174107 | AGATATCAAACCTGGGTTTTCAATG | 57.826 | 36.000 | 14.27 | 5.14 | 44.84 | 2.82 |
5199 | 5290 | 6.725834 | AGATATCAAACCTGGGTTTTCAATGT | 59.274 | 34.615 | 14.27 | 7.66 | 44.84 | 2.71 |
5200 | 5291 | 7.893302 | AGATATCAAACCTGGGTTTTCAATGTA | 59.107 | 33.333 | 14.27 | 3.73 | 44.84 | 2.29 |
5201 | 5292 | 6.933514 | ATCAAACCTGGGTTTTCAATGTAT | 57.066 | 33.333 | 14.27 | 0.00 | 44.84 | 2.29 |
5202 | 5293 | 6.739331 | TCAAACCTGGGTTTTCAATGTATT | 57.261 | 33.333 | 14.27 | 0.00 | 44.84 | 1.89 |
5203 | 5294 | 6.754193 | TCAAACCTGGGTTTTCAATGTATTC | 58.246 | 36.000 | 14.27 | 0.00 | 44.84 | 1.75 |
5204 | 5295 | 5.738619 | AACCTGGGTTTTCAATGTATTCC | 57.261 | 39.130 | 0.00 | 0.00 | 34.22 | 3.01 |
5205 | 5296 | 4.093743 | ACCTGGGTTTTCAATGTATTCCC | 58.906 | 43.478 | 0.00 | 0.00 | 0.00 | 3.97 |
5206 | 5297 | 4.093011 | CCTGGGTTTTCAATGTATTCCCA | 58.907 | 43.478 | 0.00 | 0.00 | 40.70 | 4.37 |
5207 | 5298 | 4.716287 | CCTGGGTTTTCAATGTATTCCCAT | 59.284 | 41.667 | 0.00 | 0.00 | 41.82 | 4.00 |
5208 | 5299 | 5.395546 | CCTGGGTTTTCAATGTATTCCCATG | 60.396 | 44.000 | 0.00 | 0.00 | 41.82 | 3.66 |
5209 | 5300 | 5.090139 | TGGGTTTTCAATGTATTCCCATGT | 58.910 | 37.500 | 0.00 | 0.00 | 38.51 | 3.21 |
5210 | 5301 | 5.046735 | TGGGTTTTCAATGTATTCCCATGTG | 60.047 | 40.000 | 0.00 | 0.00 | 38.51 | 3.21 |
5211 | 5302 | 5.186797 | GGGTTTTCAATGTATTCCCATGTGA | 59.813 | 40.000 | 0.00 | 0.00 | 34.20 | 3.58 |
5212 | 5303 | 6.295575 | GGGTTTTCAATGTATTCCCATGTGAA | 60.296 | 38.462 | 0.00 | 0.00 | 34.20 | 3.18 |
5213 | 5304 | 7.158021 | GGTTTTCAATGTATTCCCATGTGAAA | 58.842 | 34.615 | 0.00 | 0.00 | 34.21 | 2.69 |
5214 | 5305 | 7.823799 | GGTTTTCAATGTATTCCCATGTGAAAT | 59.176 | 33.333 | 0.00 | 0.00 | 35.00 | 2.17 |
5215 | 5306 | 9.218440 | GTTTTCAATGTATTCCCATGTGAAATT | 57.782 | 29.630 | 0.00 | 0.00 | 35.00 | 1.82 |
5216 | 5307 | 9.790344 | TTTTCAATGTATTCCCATGTGAAATTT | 57.210 | 25.926 | 0.00 | 0.00 | 35.00 | 1.82 |
5217 | 5308 | 9.790344 | TTTCAATGTATTCCCATGTGAAATTTT | 57.210 | 25.926 | 0.00 | 0.00 | 32.86 | 1.82 |
5218 | 5309 | 8.774890 | TCAATGTATTCCCATGTGAAATTTTG | 57.225 | 30.769 | 0.00 | 0.00 | 0.00 | 2.44 |
5219 | 5310 | 8.373981 | TCAATGTATTCCCATGTGAAATTTTGT | 58.626 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
5220 | 5311 | 8.444715 | CAATGTATTCCCATGTGAAATTTTGTG | 58.555 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
5221 | 5312 | 7.060383 | TGTATTCCCATGTGAAATTTTGTGT | 57.940 | 32.000 | 0.00 | 0.00 | 0.00 | 3.72 |
5222 | 5313 | 8.183104 | TGTATTCCCATGTGAAATTTTGTGTA | 57.817 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
5223 | 5314 | 8.642432 | TGTATTCCCATGTGAAATTTTGTGTAA | 58.358 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
5224 | 5315 | 9.482627 | GTATTCCCATGTGAAATTTTGTGTAAA | 57.517 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
5225 | 5316 | 8.970859 | ATTCCCATGTGAAATTTTGTGTAAAA | 57.029 | 26.923 | 0.00 | 0.00 | 39.86 | 1.52 |
5226 | 5317 | 8.792830 | TTCCCATGTGAAATTTTGTGTAAAAA | 57.207 | 26.923 | 0.00 | 0.00 | 39.09 | 1.94 |
5227 | 5318 | 8.970859 | TCCCATGTGAAATTTTGTGTAAAAAT | 57.029 | 26.923 | 0.00 | 0.00 | 39.09 | 1.82 |
5248 | 5339 | 6.560253 | AATATCAGAAAACATATCGGTGGC | 57.440 | 37.500 | 0.00 | 0.00 | 0.00 | 5.01 |
5249 | 5340 | 3.342377 | TCAGAAAACATATCGGTGGCA | 57.658 | 42.857 | 0.00 | 0.00 | 0.00 | 4.92 |
5250 | 5341 | 3.680490 | TCAGAAAACATATCGGTGGCAA | 58.320 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
5251 | 5342 | 4.075682 | TCAGAAAACATATCGGTGGCAAA | 58.924 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
5252 | 5343 | 4.155826 | TCAGAAAACATATCGGTGGCAAAG | 59.844 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
35 | 36 | 2.896801 | GCTGCCGGCCATCGTATTG | 61.897 | 63.158 | 26.77 | 3.67 | 37.11 | 1.90 |
61 | 62 | 3.460340 | TCCTTCCAACACTAGGTTTTCCA | 59.540 | 43.478 | 0.00 | 0.00 | 43.73 | 3.53 |
76 | 77 | 1.004745 | GGGCTGTGAATCTTCCTTCCA | 59.995 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
94 | 95 | 2.537401 | GAGAAGTCGGTACATTTCGGG | 58.463 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
127 | 128 | 5.586877 | AGGTACTTGGGTTATACACTGAGA | 58.413 | 41.667 | 0.00 | 0.00 | 27.25 | 3.27 |
145 | 146 | 1.226717 | CCTCTTGCTCGCGAGGTAC | 60.227 | 63.158 | 35.10 | 20.30 | 41.49 | 3.34 |
155 | 156 | 1.430369 | AAGTGAAGCCCCCTCTTGCT | 61.430 | 55.000 | 0.00 | 0.00 | 40.17 | 3.91 |
201 | 202 | 3.521765 | AATTTGGTCGGGGCAGCCA | 62.522 | 57.895 | 15.19 | 0.00 | 0.00 | 4.75 |
227 | 228 | 3.289834 | CAGCCTTGCGCACCACTT | 61.290 | 61.111 | 11.12 | 0.00 | 41.38 | 3.16 |
229 | 230 | 3.259425 | CTTCAGCCTTGCGCACCAC | 62.259 | 63.158 | 11.12 | 1.16 | 41.38 | 4.16 |
256 | 257 | 0.481128 | GGTGAGTTCCTTTTCCCCCA | 59.519 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
259 | 261 | 2.171003 | CCATGGTGAGTTCCTTTTCCC | 58.829 | 52.381 | 2.57 | 0.00 | 0.00 | 3.97 |
429 | 432 | 4.803426 | GCACCCTCGCCTCGTCTG | 62.803 | 72.222 | 0.00 | 0.00 | 0.00 | 3.51 |
444 | 447 | 4.958897 | CCGGGGGTCCAAAACGCA | 62.959 | 66.667 | 0.00 | 0.00 | 42.43 | 5.24 |
470 | 474 | 2.983791 | CCCAGCAGGCCCAATTTG | 59.016 | 61.111 | 0.00 | 0.00 | 0.00 | 2.32 |
518 | 522 | 0.679505 | CAGAGACAAGTCGGGTTCCA | 59.320 | 55.000 | 0.00 | 0.00 | 34.09 | 3.53 |
828 | 852 | 0.189822 | ATCTAGCCTCCCCCTCAGAC | 59.810 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
930 | 954 | 4.213482 | CACACAAAAGCTAACAGGTCTACC | 59.787 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
1152 | 1179 | 1.028130 | TGTTTGCCGCAATGACAAGA | 58.972 | 45.000 | 6.64 | 0.00 | 0.00 | 3.02 |
1173 | 1200 | 3.302347 | CTTCACCTCGAGCGGCCTT | 62.302 | 63.158 | 6.99 | 0.00 | 0.00 | 4.35 |
1215 | 1242 | 1.000896 | GCTAAAGGCCAGCTTCCCA | 60.001 | 57.895 | 5.01 | 0.00 | 36.07 | 4.37 |
1281 | 1308 | 1.864862 | GTCGTCTTCGTCGTCCTCA | 59.135 | 57.895 | 0.00 | 0.00 | 38.33 | 3.86 |
1293 | 1320 | 1.591594 | CACACCAGCAACGTCGTCT | 60.592 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
1329 | 1356 | 0.314935 | CAATGGACTTGTGCCGCTTT | 59.685 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1877 | 1910 | 2.867109 | AGCATAGTTTCACTGGTGCT | 57.133 | 45.000 | 10.92 | 10.92 | 42.56 | 4.40 |
1878 | 1911 | 3.923017 | AAAGCATAGTTTCACTGGTGC | 57.077 | 42.857 | 7.60 | 7.60 | 39.71 | 5.01 |
1879 | 1912 | 3.983344 | GCAAAAGCATAGTTTCACTGGTG | 59.017 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
1880 | 1913 | 3.005791 | GGCAAAAGCATAGTTTCACTGGT | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1881 | 1914 | 3.256631 | AGGCAAAAGCATAGTTTCACTGG | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1892 | 1925 | 2.658285 | TGCATAGCTAGGCAAAAGCAT | 58.342 | 42.857 | 29.27 | 0.00 | 40.30 | 3.79 |
2049 | 2085 | 9.982651 | GATGTCCATATTAGACAAGCTACTAAA | 57.017 | 33.333 | 8.93 | 3.85 | 46.67 | 1.85 |
2376 | 2413 | 3.004419 | TCTTCTGGCGTGTAATATCCTCG | 59.996 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
2583 | 2620 | 1.075425 | CTTCAGCAAGCCGAGTCTCG | 61.075 | 60.000 | 15.53 | 15.53 | 40.07 | 4.04 |
2622 | 2659 | 2.165998 | GAAGCCTGAGCATCCTTTGTT | 58.834 | 47.619 | 0.00 | 0.00 | 43.56 | 2.83 |
2799 | 2840 | 6.091441 | CAGAAGCAGGTGTTTGATAGTTAGAC | 59.909 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
2823 | 2864 | 6.306199 | ACCTTCATATGCACCATATAAAGCA | 58.694 | 36.000 | 0.00 | 0.00 | 33.17 | 3.91 |
2910 | 2953 | 2.922335 | GCACGCAAGCTTAAGAAAAGGG | 60.922 | 50.000 | 6.67 | 3.68 | 45.62 | 3.95 |
2934 | 2977 | 2.622942 | TGTGGAAGCAATCAAACCAGAC | 59.377 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
2964 | 3007 | 1.089112 | GTAACATGCGTACCCAACCC | 58.911 | 55.000 | 0.00 | 0.00 | 0.00 | 4.11 |
3033 | 3076 | 5.923114 | GCCAAAAACTCAGAGAAGAAAATCC | 59.077 | 40.000 | 3.79 | 0.00 | 0.00 | 3.01 |
3116 | 3160 | 7.502226 | ACAGAATTCAGTTGTTCACATAAAGGA | 59.498 | 33.333 | 8.44 | 0.00 | 0.00 | 3.36 |
3137 | 3181 | 5.719563 | TGTAGGATGACAACAGGATACAGAA | 59.280 | 40.000 | 0.00 | 0.00 | 41.41 | 3.02 |
3141 | 3185 | 9.862371 | CTATAATGTAGGATGACAACAGGATAC | 57.138 | 37.037 | 0.00 | 0.00 | 31.83 | 2.24 |
3700 | 3751 | 5.091261 | ACAGGCATTTACTAGAACTGGAG | 57.909 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3775 | 3826 | 9.859427 | GAATACAGGATTCATTGTTTCATTTGA | 57.141 | 29.630 | 0.00 | 0.00 | 43.16 | 2.69 |
3820 | 3872 | 5.529800 | ACGTAAACTTAACAATTCACCAGCT | 59.470 | 36.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3886 | 3938 | 5.957771 | AGGATTAATTAGGTCACTGAGCA | 57.042 | 39.130 | 10.78 | 0.00 | 31.89 | 4.26 |
4254 | 4311 | 3.635268 | CTGGCTGACCTCCCCTTGC | 62.635 | 68.421 | 0.00 | 0.00 | 36.63 | 4.01 |
4271 | 4328 | 1.273759 | GGTTTCTTACGTCTCCCCCT | 58.726 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4513 | 4570 | 7.148540 | CCATTTGAAACATCAACTTTGGCATAG | 60.149 | 37.037 | 3.24 | 3.24 | 0.00 | 2.23 |
4629 | 4688 | 1.678627 | TCGCTTTGCACTAGCCAAAAA | 59.321 | 42.857 | 12.95 | 0.00 | 41.13 | 1.94 |
4722 | 4781 | 8.364142 | TCTATGGTCAAACTTTAACCCAAAATG | 58.636 | 33.333 | 0.00 | 0.00 | 31.78 | 2.32 |
4882 | 4969 | 4.389077 | CCGTCTGAGTTTATTGTGTCTTCC | 59.611 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
4988 | 5079 | 6.926272 | ACTTGTCTCTTCAGTAAGTCATCAAC | 59.074 | 38.462 | 0.00 | 0.00 | 34.13 | 3.18 |
4999 | 5090 | 5.303971 | CCTCAAATGACTTGTCTCTTCAGT | 58.696 | 41.667 | 2.35 | 0.00 | 36.34 | 3.41 |
5025 | 5116 | 4.830826 | AAAGAAAAACCTCGACATCACC | 57.169 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
5033 | 5124 | 9.900264 | CAAGTTTCATTAAAAAGAAAAACCTCG | 57.100 | 29.630 | 0.00 | 0.00 | 35.71 | 4.63 |
5070 | 5161 | 5.145564 | TCCTACCACTATAGGCTGGTTAAG | 58.854 | 45.833 | 17.57 | 11.15 | 41.51 | 1.85 |
5078 | 5169 | 3.163616 | AGAGCTCCTACCACTATAGGC | 57.836 | 52.381 | 10.93 | 0.00 | 41.51 | 3.93 |
5088 | 5179 | 2.291856 | AGCACCCAAGAGCTCCTAC | 58.708 | 57.895 | 10.93 | 0.00 | 34.53 | 3.18 |
5089 | 5180 | 4.896979 | AGCACCCAAGAGCTCCTA | 57.103 | 55.556 | 10.93 | 0.00 | 34.53 | 2.94 |
5102 | 5193 | 2.047061 | TCATATAGGGGTGTGGAGCAC | 58.953 | 52.381 | 0.00 | 0.00 | 46.97 | 4.40 |
5103 | 5194 | 2.487746 | TCATATAGGGGTGTGGAGCA | 57.512 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5104 | 5195 | 5.700402 | ATATTCATATAGGGGTGTGGAGC | 57.300 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
5106 | 5197 | 9.973661 | CATTTAATATTCATATAGGGGTGTGGA | 57.026 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
5107 | 5198 | 9.753674 | ACATTTAATATTCATATAGGGGTGTGG | 57.246 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
5170 | 5261 | 6.780031 | TGAAAACCCAGGTTTGATATCTTCAA | 59.220 | 34.615 | 15.33 | 0.00 | 46.22 | 2.69 |
5171 | 5262 | 6.310941 | TGAAAACCCAGGTTTGATATCTTCA | 58.689 | 36.000 | 15.33 | 10.31 | 46.22 | 3.02 |
5172 | 5263 | 6.834168 | TGAAAACCCAGGTTTGATATCTTC | 57.166 | 37.500 | 15.33 | 8.01 | 46.22 | 2.87 |
5173 | 5264 | 7.235399 | ACATTGAAAACCCAGGTTTGATATCTT | 59.765 | 33.333 | 15.33 | 0.00 | 46.22 | 2.40 |
5174 | 5265 | 6.725834 | ACATTGAAAACCCAGGTTTGATATCT | 59.274 | 34.615 | 15.33 | 0.00 | 46.22 | 1.98 |
5175 | 5266 | 6.935167 | ACATTGAAAACCCAGGTTTGATATC | 58.065 | 36.000 | 15.33 | 9.64 | 46.22 | 1.63 |
5176 | 5267 | 6.933514 | ACATTGAAAACCCAGGTTTGATAT | 57.066 | 33.333 | 15.33 | 6.54 | 46.22 | 1.63 |
5177 | 5268 | 8.429237 | AATACATTGAAAACCCAGGTTTGATA | 57.571 | 30.769 | 15.33 | 4.59 | 46.22 | 2.15 |
5178 | 5269 | 6.933514 | ATACATTGAAAACCCAGGTTTGAT | 57.066 | 33.333 | 15.33 | 7.68 | 46.22 | 2.57 |
5179 | 5270 | 6.239458 | GGAATACATTGAAAACCCAGGTTTGA | 60.239 | 38.462 | 15.33 | 5.79 | 46.22 | 2.69 |
5180 | 5271 | 5.931724 | GGAATACATTGAAAACCCAGGTTTG | 59.068 | 40.000 | 15.33 | 6.15 | 46.22 | 2.93 |
5182 | 5273 | 4.530553 | GGGAATACATTGAAAACCCAGGTT | 59.469 | 41.667 | 0.00 | 0.00 | 40.45 | 3.50 |
5183 | 5274 | 4.093743 | GGGAATACATTGAAAACCCAGGT | 58.906 | 43.478 | 0.00 | 0.00 | 36.27 | 4.00 |
5184 | 5275 | 4.093011 | TGGGAATACATTGAAAACCCAGG | 58.907 | 43.478 | 0.00 | 0.00 | 40.52 | 4.45 |
5185 | 5276 | 5.187576 | ACATGGGAATACATTGAAAACCCAG | 59.812 | 40.000 | 0.00 | 0.00 | 46.86 | 4.45 |
5187 | 5278 | 5.186797 | TCACATGGGAATACATTGAAAACCC | 59.813 | 40.000 | 0.00 | 0.00 | 36.72 | 4.11 |
5188 | 5279 | 6.279513 | TCACATGGGAATACATTGAAAACC | 57.720 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
5189 | 5280 | 8.776376 | ATTTCACATGGGAATACATTGAAAAC | 57.224 | 30.769 | 12.06 | 0.00 | 39.00 | 2.43 |
5190 | 5281 | 9.790344 | AAATTTCACATGGGAATACATTGAAAA | 57.210 | 25.926 | 12.06 | 0.00 | 39.00 | 2.29 |
5191 | 5282 | 9.790344 | AAAATTTCACATGGGAATACATTGAAA | 57.210 | 25.926 | 12.06 | 7.91 | 39.36 | 2.69 |
5192 | 5283 | 9.217278 | CAAAATTTCACATGGGAATACATTGAA | 57.783 | 29.630 | 12.06 | 0.00 | 31.94 | 2.69 |
5193 | 5284 | 8.373981 | ACAAAATTTCACATGGGAATACATTGA | 58.626 | 29.630 | 22.33 | 5.92 | 0.00 | 2.57 |
5194 | 5285 | 8.444715 | CACAAAATTTCACATGGGAATACATTG | 58.555 | 33.333 | 12.06 | 15.62 | 0.00 | 2.82 |
5195 | 5286 | 8.156165 | ACACAAAATTTCACATGGGAATACATT | 58.844 | 29.630 | 12.06 | 5.74 | 0.00 | 2.71 |
5196 | 5287 | 7.678837 | ACACAAAATTTCACATGGGAATACAT | 58.321 | 30.769 | 12.06 | 0.00 | 0.00 | 2.29 |
5197 | 5288 | 7.060383 | ACACAAAATTTCACATGGGAATACA | 57.940 | 32.000 | 12.06 | 0.00 | 0.00 | 2.29 |
5198 | 5289 | 9.482627 | TTTACACAAAATTTCACATGGGAATAC | 57.517 | 29.630 | 12.06 | 0.00 | 0.00 | 1.89 |
5200 | 5291 | 8.970859 | TTTTACACAAAATTTCACATGGGAAT | 57.029 | 26.923 | 12.06 | 0.00 | 0.00 | 3.01 |
5201 | 5292 | 8.792830 | TTTTTACACAAAATTTCACATGGGAA | 57.207 | 26.923 | 6.21 | 6.21 | 33.72 | 3.97 |
5202 | 5293 | 8.970859 | ATTTTTACACAAAATTTCACATGGGA | 57.029 | 26.923 | 0.00 | 0.00 | 33.72 | 4.37 |
5222 | 5313 | 7.920682 | GCCACCGATATGTTTTCTGATATTTTT | 59.079 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
5223 | 5314 | 7.068103 | TGCCACCGATATGTTTTCTGATATTTT | 59.932 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
5224 | 5315 | 6.545666 | TGCCACCGATATGTTTTCTGATATTT | 59.454 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
5225 | 5316 | 6.061441 | TGCCACCGATATGTTTTCTGATATT | 58.939 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
5226 | 5317 | 5.620206 | TGCCACCGATATGTTTTCTGATAT | 58.380 | 37.500 | 0.00 | 0.00 | 0.00 | 1.63 |
5227 | 5318 | 5.029807 | TGCCACCGATATGTTTTCTGATA | 57.970 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
5228 | 5319 | 3.884895 | TGCCACCGATATGTTTTCTGAT | 58.115 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
5229 | 5320 | 3.342377 | TGCCACCGATATGTTTTCTGA | 57.658 | 42.857 | 0.00 | 0.00 | 0.00 | 3.27 |
5230 | 5321 | 4.414852 | CTTTGCCACCGATATGTTTTCTG | 58.585 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
5231 | 5322 | 4.701956 | CTTTGCCACCGATATGTTTTCT | 57.298 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.