Multiple sequence alignment - TraesCS5D01G178700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G178700 chr5D 100.000 2141 0 0 1 2141 278219099 278221239 0.000000e+00 3954
1 TraesCS5D01G178700 chr5D 96.047 936 30 5 1213 2141 509183610 509184545 0.000000e+00 1517
2 TraesCS5D01G178700 chr1D 96.559 930 28 4 1216 2141 183092253 183091324 0.000000e+00 1537
3 TraesCS5D01G178700 chr1D 96.348 931 29 5 1216 2141 419392431 419391501 0.000000e+00 1526
4 TraesCS5D01G178700 chr1D 95.168 952 35 7 1 942 360232315 360233265 0.000000e+00 1493
5 TraesCS5D01G178700 chr6D 96.249 933 31 4 1213 2141 86485185 86486117 0.000000e+00 1526
6 TraesCS5D01G178700 chr6D 96.249 933 29 6 1213 2141 123722078 123723008 0.000000e+00 1524
7 TraesCS5D01G178700 chr6D 95.450 945 40 3 1 942 346048755 346049699 0.000000e+00 1504
8 TraesCS5D01G178700 chr6D 95.339 944 40 4 1 942 345816769 345815828 0.000000e+00 1496
9 TraesCS5D01G178700 chr3D 96.344 930 29 5 1216 2141 103198487 103197559 0.000000e+00 1524
10 TraesCS5D01G178700 chr3D 95.864 943 32 7 1204 2141 502877555 502878495 0.000000e+00 1519
11 TraesCS5D01G178700 chr3D 96.129 930 32 4 1216 2141 86754902 86753973 0.000000e+00 1515
12 TraesCS5D01G178700 chr3D 95.178 954 34 7 1 942 612967487 612966534 0.000000e+00 1496
13 TraesCS5D01G178700 chr3D 95.238 945 41 4 1 942 547602645 547603588 0.000000e+00 1493
14 TraesCS5D01G178700 chr2D 96.245 932 31 4 1213 2141 49763470 49764400 0.000000e+00 1524
15 TraesCS5D01G178700 chr2D 95.238 945 42 3 1 942 140880186 140881130 0.000000e+00 1493
16 TraesCS5D01G178700 chr2D 95.137 946 40 5 1 942 201229667 201228724 0.000000e+00 1487
17 TraesCS5D01G178700 chr2D 100.000 274 0 0 943 1216 272792730 272792457 6.820000e-140 507
18 TraesCS5D01G178700 chr4D 95.551 944 37 5 1 942 308710617 308709677 0.000000e+00 1506
19 TraesCS5D01G178700 chr4D 100.000 274 0 0 943 1216 30386815 30386542 6.820000e-140 507
20 TraesCS5D01G178700 chr7D 95.349 946 40 3 1 942 193130931 193129986 0.000000e+00 1500
21 TraesCS5D01G178700 chrUn 100.000 274 0 0 943 1216 93408449 93408176 6.820000e-140 507
22 TraesCS5D01G178700 chrUn 100.000 274 0 0 943 1216 444245249 444244976 6.820000e-140 507
23 TraesCS5D01G178700 chrUn 99.635 274 1 0 943 1216 389360318 389360591 3.170000e-138 501
24 TraesCS5D01G178700 chr4A 100.000 274 0 0 943 1216 73811654 73811927 6.820000e-140 507
25 TraesCS5D01G178700 chr3B 100.000 274 0 0 943 1216 101912358 101912631 6.820000e-140 507
26 TraesCS5D01G178700 chr3A 100.000 274 0 0 943 1216 594898441 594898168 6.820000e-140 507
27 TraesCS5D01G178700 chr1A 99.635 274 1 0 943 1216 554513431 554513704 3.170000e-138 501


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G178700 chr5D 278219099 278221239 2140 False 3954 3954 100.000 1 2141 1 chr5D.!!$F1 2140
1 TraesCS5D01G178700 chr5D 509183610 509184545 935 False 1517 1517 96.047 1213 2141 1 chr5D.!!$F2 928
2 TraesCS5D01G178700 chr1D 183091324 183092253 929 True 1537 1537 96.559 1216 2141 1 chr1D.!!$R1 925
3 TraesCS5D01G178700 chr1D 419391501 419392431 930 True 1526 1526 96.348 1216 2141 1 chr1D.!!$R2 925
4 TraesCS5D01G178700 chr1D 360232315 360233265 950 False 1493 1493 95.168 1 942 1 chr1D.!!$F1 941
5 TraesCS5D01G178700 chr6D 86485185 86486117 932 False 1526 1526 96.249 1213 2141 1 chr6D.!!$F1 928
6 TraesCS5D01G178700 chr6D 123722078 123723008 930 False 1524 1524 96.249 1213 2141 1 chr6D.!!$F2 928
7 TraesCS5D01G178700 chr6D 346048755 346049699 944 False 1504 1504 95.450 1 942 1 chr6D.!!$F3 941
8 TraesCS5D01G178700 chr6D 345815828 345816769 941 True 1496 1496 95.339 1 942 1 chr6D.!!$R1 941
9 TraesCS5D01G178700 chr3D 103197559 103198487 928 True 1524 1524 96.344 1216 2141 1 chr3D.!!$R2 925
10 TraesCS5D01G178700 chr3D 502877555 502878495 940 False 1519 1519 95.864 1204 2141 1 chr3D.!!$F1 937
11 TraesCS5D01G178700 chr3D 86753973 86754902 929 True 1515 1515 96.129 1216 2141 1 chr3D.!!$R1 925
12 TraesCS5D01G178700 chr3D 612966534 612967487 953 True 1496 1496 95.178 1 942 1 chr3D.!!$R3 941
13 TraesCS5D01G178700 chr3D 547602645 547603588 943 False 1493 1493 95.238 1 942 1 chr3D.!!$F2 941
14 TraesCS5D01G178700 chr2D 49763470 49764400 930 False 1524 1524 96.245 1213 2141 1 chr2D.!!$F1 928
15 TraesCS5D01G178700 chr2D 140880186 140881130 944 False 1493 1493 95.238 1 942 1 chr2D.!!$F2 941
16 TraesCS5D01G178700 chr2D 201228724 201229667 943 True 1487 1487 95.137 1 942 1 chr2D.!!$R1 941
17 TraesCS5D01G178700 chr4D 308709677 308710617 940 True 1506 1506 95.551 1 942 1 chr4D.!!$R2 941
18 TraesCS5D01G178700 chr7D 193129986 193130931 945 True 1500 1500 95.349 1 942 1 chr7D.!!$R1 941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 963 0.108329 GTCAACGTGGTCGGGATCAT 60.108 55.0 0.0 0.0 41.85 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 2384 0.616891 GCCTAGGAAGGGGACGAAAA 59.383 55.0 14.75 0.0 43.87 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.537889 CACTCACCCACACCCCCTA 60.538 63.158 0.00 0.00 0.00 3.53
54 55 2.201830 CTCACCCACACCCCCTATTAA 58.798 52.381 0.00 0.00 0.00 1.40
96 97 3.114616 CGCAGCCGAACCAGTGAG 61.115 66.667 0.00 0.00 36.29 3.51
115 116 1.224039 CCCTCGTACTCCTCTCCGT 59.776 63.158 0.00 0.00 0.00 4.69
143 144 2.925170 ACTGCTGCGTCTTCCCCT 60.925 61.111 0.00 0.00 0.00 4.79
149 150 1.304962 TGCGTCTTCCCCTGCTCTA 60.305 57.895 0.00 0.00 0.00 2.43
172 173 1.003051 GTCCCCTTCCTAGGCCTCA 59.997 63.158 9.68 0.00 40.50 3.86
264 274 1.228988 TGGAGAGGCTGACAGCTGA 60.229 57.895 25.92 0.00 41.99 4.26
320 331 5.751243 ACGCGCAAAATAATTATTCCTCT 57.249 34.783 5.73 0.00 0.00 3.69
400 412 3.249189 GACTGCTGGGACCCACCA 61.249 66.667 9.95 9.00 41.20 4.17
421 434 3.569690 GGGCCACCGTATTTCGCG 61.570 66.667 4.39 0.00 38.35 5.87
507 520 0.263765 TGAATACTCCCCCGGCTAGT 59.736 55.000 0.00 0.80 0.00 2.57
682 696 4.365111 TCCAGCCGCCCAAAGCAT 62.365 61.111 0.00 0.00 44.04 3.79
683 697 3.830192 CCAGCCGCCCAAAGCATC 61.830 66.667 0.00 0.00 44.04 3.91
684 698 4.183686 CAGCCGCCCAAAGCATCG 62.184 66.667 0.00 0.00 44.04 3.84
685 699 4.722700 AGCCGCCCAAAGCATCGT 62.723 61.111 0.00 0.00 44.04 3.73
686 700 4.179579 GCCGCCCAAAGCATCGTC 62.180 66.667 0.00 0.00 44.04 4.20
687 701 3.864686 CCGCCCAAAGCATCGTCG 61.865 66.667 0.00 0.00 44.04 5.12
688 702 3.864686 CGCCCAAAGCATCGTCGG 61.865 66.667 0.00 0.00 44.04 4.79
689 703 2.746277 GCCCAAAGCATCGTCGGT 60.746 61.111 0.00 0.00 42.97 4.69
690 704 2.750888 GCCCAAAGCATCGTCGGTC 61.751 63.158 0.00 0.00 42.97 4.79
691 705 1.375396 CCCAAAGCATCGTCGGTCA 60.375 57.895 0.00 0.00 0.00 4.02
692 706 0.744414 CCCAAAGCATCGTCGGTCAT 60.744 55.000 0.00 0.00 0.00 3.06
693 707 0.374758 CCAAAGCATCGTCGGTCATG 59.625 55.000 0.00 0.00 0.00 3.07
694 708 0.247814 CAAAGCATCGTCGGTCATGC 60.248 55.000 8.85 8.85 44.96 4.06
695 709 1.369091 AAAGCATCGTCGGTCATGCC 61.369 55.000 12.31 0.00 45.63 4.40
704 718 3.589881 GGTCATGCCGCATGCTCC 61.590 66.667 25.75 23.73 41.18 4.70
705 719 2.515523 GTCATGCCGCATGCTCCT 60.516 61.111 25.75 0.00 41.18 3.69
706 720 2.515290 TCATGCCGCATGCTCCTG 60.515 61.111 25.75 10.42 41.18 3.86
707 721 4.266070 CATGCCGCATGCTCCTGC 62.266 66.667 20.03 13.10 42.00 4.85
714 728 3.790437 CATGCTCCTGCCTCCCGT 61.790 66.667 0.00 0.00 38.71 5.28
715 729 3.790437 ATGCTCCTGCCTCCCGTG 61.790 66.667 0.00 0.00 38.71 4.94
755 769 2.281091 CCTCACCGCCCCCTACTA 59.719 66.667 0.00 0.00 0.00 1.82
756 770 1.152312 CCTCACCGCCCCCTACTAT 60.152 63.158 0.00 0.00 0.00 2.12
757 771 0.763223 CCTCACCGCCCCCTACTATT 60.763 60.000 0.00 0.00 0.00 1.73
758 772 0.680061 CTCACCGCCCCCTACTATTC 59.320 60.000 0.00 0.00 0.00 1.75
759 773 0.761702 TCACCGCCCCCTACTATTCC 60.762 60.000 0.00 0.00 0.00 3.01
760 774 1.460882 ACCGCCCCCTACTATTCCC 60.461 63.158 0.00 0.00 0.00 3.97
761 775 1.460689 CCGCCCCCTACTATTCCCA 60.461 63.158 0.00 0.00 0.00 4.37
762 776 1.752833 CGCCCCCTACTATTCCCAC 59.247 63.158 0.00 0.00 0.00 4.61
763 777 1.765597 CGCCCCCTACTATTCCCACC 61.766 65.000 0.00 0.00 0.00 4.61
764 778 1.765597 GCCCCCTACTATTCCCACCG 61.766 65.000 0.00 0.00 0.00 4.94
765 779 0.399519 CCCCCTACTATTCCCACCGT 60.400 60.000 0.00 0.00 0.00 4.83
766 780 1.503800 CCCCTACTATTCCCACCGTT 58.496 55.000 0.00 0.00 0.00 4.44
767 781 1.140252 CCCCTACTATTCCCACCGTTG 59.860 57.143 0.00 0.00 0.00 4.10
768 782 1.140252 CCCTACTATTCCCACCGTTGG 59.860 57.143 0.00 0.00 43.50 3.77
769 783 1.474498 CCTACTATTCCCACCGTTGGC 60.474 57.143 0.00 0.00 42.35 4.52
770 784 0.542805 TACTATTCCCACCGTTGGCC 59.457 55.000 0.00 0.00 42.35 5.36
771 785 1.301623 CTATTCCCACCGTTGGCCA 59.698 57.895 0.00 0.00 42.35 5.36
772 786 0.748005 CTATTCCCACCGTTGGCCAG 60.748 60.000 5.11 0.00 42.35 4.85
773 787 2.204865 TATTCCCACCGTTGGCCAGG 62.205 60.000 5.11 7.66 42.35 4.45
800 814 4.314440 GACGGCAGCCTCACACCA 62.314 66.667 10.54 0.00 0.00 4.17
801 815 4.626081 ACGGCAGCCTCACACCAC 62.626 66.667 10.54 0.00 0.00 4.16
802 816 4.624364 CGGCAGCCTCACACCACA 62.624 66.667 10.54 0.00 0.00 4.17
803 817 2.670934 GGCAGCCTCACACCACAG 60.671 66.667 3.29 0.00 0.00 3.66
804 818 3.360340 GCAGCCTCACACCACAGC 61.360 66.667 0.00 0.00 0.00 4.40
805 819 2.670934 CAGCCTCACACCACAGCC 60.671 66.667 0.00 0.00 0.00 4.85
806 820 4.320456 AGCCTCACACCACAGCCG 62.320 66.667 0.00 0.00 0.00 5.52
807 821 4.314440 GCCTCACACCACAGCCGA 62.314 66.667 0.00 0.00 0.00 5.54
808 822 2.425592 CCTCACACCACAGCCGAA 59.574 61.111 0.00 0.00 0.00 4.30
809 823 1.961277 CCTCACACCACAGCCGAAC 60.961 63.158 0.00 0.00 0.00 3.95
810 824 1.961277 CTCACACCACAGCCGAACC 60.961 63.158 0.00 0.00 0.00 3.62
811 825 2.203139 CACACCACAGCCGAACCA 60.203 61.111 0.00 0.00 0.00 3.67
812 826 2.111043 ACACCACAGCCGAACCAG 59.889 61.111 0.00 0.00 0.00 4.00
813 827 2.111043 CACCACAGCCGAACCAGT 59.889 61.111 0.00 0.00 0.00 4.00
814 828 2.111043 ACCACAGCCGAACCAGTG 59.889 61.111 0.00 0.00 0.00 3.66
815 829 2.425592 CCACAGCCGAACCAGTGA 59.574 61.111 0.00 0.00 33.99 3.41
816 830 1.227823 CCACAGCCGAACCAGTGAA 60.228 57.895 0.00 0.00 33.99 3.18
817 831 1.507141 CCACAGCCGAACCAGTGAAC 61.507 60.000 0.00 0.00 33.99 3.18
818 832 1.227853 ACAGCCGAACCAGTGAACC 60.228 57.895 0.00 0.00 0.00 3.62
819 833 1.966451 CAGCCGAACCAGTGAACCC 60.966 63.158 0.00 0.00 0.00 4.11
820 834 2.147387 AGCCGAACCAGTGAACCCT 61.147 57.895 0.00 0.00 0.00 4.34
821 835 1.671379 GCCGAACCAGTGAACCCTC 60.671 63.158 0.00 0.00 0.00 4.30
822 836 1.374252 CCGAACCAGTGAACCCTCG 60.374 63.158 0.00 0.00 0.00 4.63
823 837 1.366366 CGAACCAGTGAACCCTCGT 59.634 57.895 0.00 0.00 0.00 4.18
824 838 0.599558 CGAACCAGTGAACCCTCGTA 59.400 55.000 0.00 0.00 0.00 3.43
825 839 1.668047 CGAACCAGTGAACCCTCGTAC 60.668 57.143 0.00 0.00 0.00 3.67
826 840 1.617357 GAACCAGTGAACCCTCGTACT 59.383 52.381 0.00 0.00 0.00 2.73
827 841 1.254954 ACCAGTGAACCCTCGTACTC 58.745 55.000 0.00 0.00 0.00 2.59
828 842 0.531200 CCAGTGAACCCTCGTACTCC 59.469 60.000 0.00 0.00 0.00 3.85
829 843 1.546961 CAGTGAACCCTCGTACTCCT 58.453 55.000 0.00 0.00 0.00 3.69
830 844 1.473278 CAGTGAACCCTCGTACTCCTC 59.527 57.143 0.00 0.00 0.00 3.71
831 845 1.355043 AGTGAACCCTCGTACTCCTCT 59.645 52.381 0.00 0.00 0.00 3.69
832 846 1.744522 GTGAACCCTCGTACTCCTCTC 59.255 57.143 0.00 0.00 0.00 3.20
833 847 1.340795 TGAACCCTCGTACTCCTCTCC 60.341 57.143 0.00 0.00 0.00 3.71
834 848 0.394080 AACCCTCGTACTCCTCTCCG 60.394 60.000 0.00 0.00 0.00 4.63
835 849 2.188161 CCCTCGTACTCCTCTCCGC 61.188 68.421 0.00 0.00 0.00 5.54
836 850 2.535788 CCTCGTACTCCTCTCCGCG 61.536 68.421 0.00 0.00 0.00 6.46
837 851 3.170810 CTCGTACTCCTCTCCGCGC 62.171 68.421 0.00 0.00 0.00 6.86
838 852 4.592936 CGTACTCCTCTCCGCGCG 62.593 72.222 25.67 25.67 0.00 6.86
839 853 4.253257 GTACTCCTCTCCGCGCGG 62.253 72.222 42.13 42.13 0.00 6.46
857 871 2.031163 GCTTCCACTGCCACGTCT 59.969 61.111 0.00 0.00 0.00 4.18
858 872 1.598130 GCTTCCACTGCCACGTCTT 60.598 57.895 0.00 0.00 0.00 3.01
859 873 1.569479 GCTTCCACTGCCACGTCTTC 61.569 60.000 0.00 0.00 0.00 2.87
860 874 0.951040 CTTCCACTGCCACGTCTTCC 60.951 60.000 0.00 0.00 0.00 3.46
861 875 2.358737 CCACTGCCACGTCTTCCC 60.359 66.667 0.00 0.00 0.00 3.97
862 876 2.358737 CACTGCCACGTCTTCCCC 60.359 66.667 0.00 0.00 0.00 4.81
863 877 4.003788 ACTGCCACGTCTTCCCCG 62.004 66.667 0.00 0.00 0.00 5.73
864 878 4.760047 CTGCCACGTCTTCCCCGG 62.760 72.222 0.00 0.00 0.00 5.73
867 881 4.452733 CCACGTCTTCCCCGGCTC 62.453 72.222 0.00 0.00 0.00 4.70
868 882 4.452733 CACGTCTTCCCCGGCTCC 62.453 72.222 0.00 0.00 0.00 4.70
882 896 4.493747 CTCCGCGTCGTCCCCTTC 62.494 72.222 4.92 0.00 0.00 3.46
885 899 3.136123 CGCGTCGTCCCCTTCCTA 61.136 66.667 0.00 0.00 0.00 2.94
886 900 2.806237 GCGTCGTCCCCTTCCTAG 59.194 66.667 0.00 0.00 0.00 3.02
887 901 2.783288 GCGTCGTCCCCTTCCTAGG 61.783 68.421 0.82 0.82 41.60 3.02
888 902 2.783288 CGTCGTCCCCTTCCTAGGC 61.783 68.421 2.96 0.00 40.50 3.93
889 903 2.042230 TCGTCCCCTTCCTAGGCC 60.042 66.667 2.96 0.00 40.50 5.19
890 904 2.041819 CGTCCCCTTCCTAGGCCT 60.042 66.667 11.78 11.78 40.50 5.19
891 905 2.134933 CGTCCCCTTCCTAGGCCTC 61.135 68.421 9.68 0.00 40.50 4.70
892 906 2.134933 GTCCCCTTCCTAGGCCTCG 61.135 68.421 9.68 1.43 40.50 4.63
893 907 3.551407 CCCCTTCCTAGGCCTCGC 61.551 72.222 9.68 0.00 40.50 5.03
944 958 2.663852 GTGGTCAACGTGGTCGGG 60.664 66.667 0.00 0.00 41.85 5.14
945 959 2.838693 TGGTCAACGTGGTCGGGA 60.839 61.111 0.00 0.00 41.85 5.14
946 960 2.211410 TGGTCAACGTGGTCGGGAT 61.211 57.895 0.00 0.00 41.85 3.85
947 961 1.447314 GGTCAACGTGGTCGGGATC 60.447 63.158 0.00 0.00 41.85 3.36
948 962 1.290955 GTCAACGTGGTCGGGATCA 59.709 57.895 0.00 0.00 41.85 2.92
949 963 0.108329 GTCAACGTGGTCGGGATCAT 60.108 55.000 0.00 0.00 41.85 2.45
950 964 0.174845 TCAACGTGGTCGGGATCATC 59.825 55.000 0.00 0.00 41.85 2.92
951 965 1.141019 AACGTGGTCGGGATCATCG 59.859 57.895 0.00 0.00 41.85 3.84
952 966 1.601419 AACGTGGTCGGGATCATCGT 61.601 55.000 0.00 4.51 41.85 3.73
953 967 0.749091 ACGTGGTCGGGATCATCGTA 60.749 55.000 7.46 0.00 41.85 3.43
954 968 0.317603 CGTGGTCGGGATCATCGTAC 60.318 60.000 7.42 5.23 0.00 3.67
955 969 0.742505 GTGGTCGGGATCATCGTACA 59.257 55.000 7.42 5.65 0.00 2.90
956 970 1.340248 GTGGTCGGGATCATCGTACAT 59.660 52.381 7.42 0.00 0.00 2.29
957 971 1.611977 TGGTCGGGATCATCGTACATC 59.388 52.381 7.42 0.00 0.00 3.06
958 972 1.401148 GGTCGGGATCATCGTACATCG 60.401 57.143 7.42 0.00 41.41 3.84
959 973 1.266175 GTCGGGATCATCGTACATCGT 59.734 52.381 7.42 0.00 40.80 3.73
960 974 2.481568 GTCGGGATCATCGTACATCGTA 59.518 50.000 7.42 0.00 40.80 3.43
961 975 3.058708 GTCGGGATCATCGTACATCGTAA 60.059 47.826 7.42 0.00 40.80 3.18
962 976 3.565063 TCGGGATCATCGTACATCGTAAA 59.435 43.478 7.42 0.00 40.80 2.01
963 977 4.216902 TCGGGATCATCGTACATCGTAAAT 59.783 41.667 7.42 0.00 40.80 1.40
964 978 5.412286 TCGGGATCATCGTACATCGTAAATA 59.588 40.000 7.42 0.00 40.80 1.40
965 979 6.072563 TCGGGATCATCGTACATCGTAAATAA 60.073 38.462 7.42 0.00 40.80 1.40
966 980 6.033196 CGGGATCATCGTACATCGTAAATAAC 59.967 42.308 0.00 0.00 40.80 1.89
967 981 6.309737 GGGATCATCGTACATCGTAAATAACC 59.690 42.308 0.00 0.00 40.80 2.85
968 982 6.864685 GGATCATCGTACATCGTAAATAACCA 59.135 38.462 0.00 0.00 40.80 3.67
969 983 7.383029 GGATCATCGTACATCGTAAATAACCAA 59.617 37.037 0.00 0.00 40.80 3.67
970 984 8.827177 ATCATCGTACATCGTAAATAACCAAT 57.173 30.769 0.00 0.00 40.80 3.16
971 985 8.651391 TCATCGTACATCGTAAATAACCAATT 57.349 30.769 0.00 0.00 40.80 2.32
972 986 9.100554 TCATCGTACATCGTAAATAACCAATTT 57.899 29.630 0.00 0.00 38.60 1.82
973 987 9.710979 CATCGTACATCGTAAATAACCAATTTT 57.289 29.630 0.00 0.00 37.36 1.82
974 988 9.925268 ATCGTACATCGTAAATAACCAATTTTC 57.075 29.630 0.00 0.00 37.36 2.29
975 989 8.933807 TCGTACATCGTAAATAACCAATTTTCA 58.066 29.630 0.00 0.00 37.36 2.69
976 990 9.710979 CGTACATCGTAAATAACCAATTTTCAT 57.289 29.630 0.00 0.00 38.71 2.57
1024 1038 9.669353 AAATGAAATCGAAAATATTCCGAGATG 57.331 29.630 15.09 0.00 31.52 2.90
1025 1039 7.189693 TGAAATCGAAAATATTCCGAGATGG 57.810 36.000 15.09 0.00 40.09 3.51
1026 1040 5.613358 AATCGAAAATATTCCGAGATGGC 57.387 39.130 15.09 0.00 37.80 4.40
1027 1041 4.066646 TCGAAAATATTCCGAGATGGCA 57.933 40.909 8.31 0.00 37.80 4.92
1028 1042 4.447290 TCGAAAATATTCCGAGATGGCAA 58.553 39.130 8.31 0.00 37.80 4.52
1029 1043 4.878971 TCGAAAATATTCCGAGATGGCAAA 59.121 37.500 8.31 0.00 37.80 3.68
1030 1044 5.530915 TCGAAAATATTCCGAGATGGCAAAT 59.469 36.000 8.31 0.00 37.80 2.32
1031 1045 6.708502 TCGAAAATATTCCGAGATGGCAAATA 59.291 34.615 8.31 0.00 37.80 1.40
1032 1046 7.390440 TCGAAAATATTCCGAGATGGCAAATAT 59.610 33.333 8.31 0.00 37.80 1.28
1033 1047 8.023128 CGAAAATATTCCGAGATGGCAAATATT 58.977 33.333 6.72 6.72 38.12 1.28
1034 1048 9.346725 GAAAATATTCCGAGATGGCAAATATTC 57.653 33.333 11.12 0.00 36.68 1.75
1035 1049 6.668541 ATATTCCGAGATGGCAAATATTCG 57.331 37.500 0.00 0.00 37.80 3.34
1036 1050 2.766313 TCCGAGATGGCAAATATTCGG 58.234 47.619 16.95 16.95 46.55 4.30
1039 1053 3.653344 CGAGATGGCAAATATTCGGAGA 58.347 45.455 0.00 0.00 0.00 3.71
1040 1054 4.248859 CGAGATGGCAAATATTCGGAGAT 58.751 43.478 0.00 0.00 35.04 2.75
1041 1055 4.092529 CGAGATGGCAAATATTCGGAGATG 59.907 45.833 0.00 0.00 35.04 2.90
1042 1056 5.233083 AGATGGCAAATATTCGGAGATGA 57.767 39.130 0.00 0.00 35.04 2.92
1043 1057 4.999950 AGATGGCAAATATTCGGAGATGAC 59.000 41.667 0.00 0.00 35.04 3.06
1044 1058 4.422073 TGGCAAATATTCGGAGATGACT 57.578 40.909 0.00 0.00 35.04 3.41
1045 1059 5.545063 TGGCAAATATTCGGAGATGACTA 57.455 39.130 0.00 0.00 35.04 2.59
1046 1060 6.114187 TGGCAAATATTCGGAGATGACTAT 57.886 37.500 0.00 0.00 35.04 2.12
1047 1061 5.934043 TGGCAAATATTCGGAGATGACTATG 59.066 40.000 0.00 0.00 35.04 2.23
1048 1062 6.166279 GGCAAATATTCGGAGATGACTATGA 58.834 40.000 0.00 0.00 35.04 2.15
1049 1063 6.650807 GGCAAATATTCGGAGATGACTATGAA 59.349 38.462 0.00 0.00 35.04 2.57
1050 1064 7.173218 GGCAAATATTCGGAGATGACTATGAAA 59.827 37.037 0.00 0.00 35.04 2.69
1051 1065 8.559536 GCAAATATTCGGAGATGACTATGAAAA 58.440 33.333 0.00 0.00 35.04 2.29
1052 1066 9.869844 CAAATATTCGGAGATGACTATGAAAAC 57.130 33.333 0.00 0.00 35.04 2.43
1053 1067 9.613428 AAATATTCGGAGATGACTATGAAAACA 57.387 29.630 0.00 0.00 35.04 2.83
1054 1068 6.910536 ATTCGGAGATGACTATGAAAACAC 57.089 37.500 0.00 0.00 35.04 3.32
1055 1069 4.755411 TCGGAGATGACTATGAAAACACC 58.245 43.478 0.00 0.00 0.00 4.16
1056 1070 4.466370 TCGGAGATGACTATGAAAACACCT 59.534 41.667 0.00 0.00 0.00 4.00
1057 1071 4.806247 CGGAGATGACTATGAAAACACCTC 59.194 45.833 0.00 0.00 0.00 3.85
1058 1072 5.394663 CGGAGATGACTATGAAAACACCTCT 60.395 44.000 0.00 0.00 0.00 3.69
1059 1073 6.045955 GGAGATGACTATGAAAACACCTCTC 58.954 44.000 0.00 0.00 0.00 3.20
1060 1074 6.127196 GGAGATGACTATGAAAACACCTCTCT 60.127 42.308 0.00 0.00 0.00 3.10
1061 1075 6.638610 AGATGACTATGAAAACACCTCTCTG 58.361 40.000 0.00 0.00 0.00 3.35
1062 1076 5.152623 TGACTATGAAAACACCTCTCTGG 57.847 43.478 0.00 0.00 42.93 3.86
1063 1077 4.838423 TGACTATGAAAACACCTCTCTGGA 59.162 41.667 0.00 0.00 39.71 3.86
1064 1078 5.485353 TGACTATGAAAACACCTCTCTGGAT 59.515 40.000 0.00 0.00 39.71 3.41
1065 1079 5.983540 ACTATGAAAACACCTCTCTGGATC 58.016 41.667 0.00 0.00 39.71 3.36
1066 1080 3.703001 TGAAAACACCTCTCTGGATCC 57.297 47.619 4.20 4.20 39.71 3.36
1067 1081 3.251484 TGAAAACACCTCTCTGGATCCT 58.749 45.455 14.23 0.00 39.71 3.24
1068 1082 3.261897 TGAAAACACCTCTCTGGATCCTC 59.738 47.826 14.23 0.00 39.71 3.71
1069 1083 1.479709 AACACCTCTCTGGATCCTCG 58.520 55.000 14.23 4.22 39.71 4.63
1070 1084 0.626382 ACACCTCTCTGGATCCTCGA 59.374 55.000 14.23 8.63 39.71 4.04
1071 1085 1.006043 ACACCTCTCTGGATCCTCGAA 59.994 52.381 14.23 0.00 39.71 3.71
1072 1086 2.315176 CACCTCTCTGGATCCTCGAAT 58.685 52.381 14.23 0.00 39.71 3.34
1073 1087 2.697751 CACCTCTCTGGATCCTCGAATT 59.302 50.000 14.23 0.00 39.71 2.17
1074 1088 2.697751 ACCTCTCTGGATCCTCGAATTG 59.302 50.000 14.23 3.49 39.71 2.32
1075 1089 2.961741 CCTCTCTGGATCCTCGAATTGA 59.038 50.000 14.23 3.15 38.35 2.57
1076 1090 3.386078 CCTCTCTGGATCCTCGAATTGAA 59.614 47.826 14.23 0.00 38.35 2.69
1077 1091 4.141846 CCTCTCTGGATCCTCGAATTGAAA 60.142 45.833 14.23 0.00 38.35 2.69
1078 1092 5.016051 TCTCTGGATCCTCGAATTGAAAG 57.984 43.478 14.23 0.00 0.00 2.62
1079 1093 4.711846 TCTCTGGATCCTCGAATTGAAAGA 59.288 41.667 14.23 2.13 0.00 2.52
1080 1094 5.016051 TCTGGATCCTCGAATTGAAAGAG 57.984 43.478 14.23 0.00 0.00 2.85
1081 1095 4.711846 TCTGGATCCTCGAATTGAAAGAGA 59.288 41.667 14.23 0.00 34.13 3.10
1082 1096 5.016051 TGGATCCTCGAATTGAAAGAGAG 57.984 43.478 14.23 0.00 34.13 3.20
1083 1097 4.711846 TGGATCCTCGAATTGAAAGAGAGA 59.288 41.667 14.23 0.00 34.13 3.10
1084 1098 5.365025 TGGATCCTCGAATTGAAAGAGAGAT 59.635 40.000 14.23 0.00 34.13 2.75
1085 1099 6.126940 TGGATCCTCGAATTGAAAGAGAGATT 60.127 38.462 14.23 0.00 34.13 2.40
1086 1100 6.202570 GGATCCTCGAATTGAAAGAGAGATTG 59.797 42.308 3.84 0.00 34.13 2.67
1087 1101 6.286240 TCCTCGAATTGAAAGAGAGATTGA 57.714 37.500 0.00 0.00 34.13 2.57
1088 1102 6.336566 TCCTCGAATTGAAAGAGAGATTGAG 58.663 40.000 0.00 0.00 34.13 3.02
1089 1103 6.153510 TCCTCGAATTGAAAGAGAGATTGAGA 59.846 38.462 0.00 0.00 34.13 3.27
1090 1104 6.476380 CCTCGAATTGAAAGAGAGATTGAGAG 59.524 42.308 0.00 0.00 34.13 3.20
1091 1105 6.336566 TCGAATTGAAAGAGAGATTGAGAGG 58.663 40.000 0.00 0.00 0.00 3.69
1092 1106 5.523188 CGAATTGAAAGAGAGATTGAGAGGG 59.477 44.000 0.00 0.00 0.00 4.30
1093 1107 6.629068 CGAATTGAAAGAGAGATTGAGAGGGA 60.629 42.308 0.00 0.00 0.00 4.20
1094 1108 6.828307 ATTGAAAGAGAGATTGAGAGGGAT 57.172 37.500 0.00 0.00 0.00 3.85
1095 1109 5.867903 TGAAAGAGAGATTGAGAGGGATC 57.132 43.478 0.00 0.00 0.00 3.36
1096 1110 5.275630 TGAAAGAGAGATTGAGAGGGATCA 58.724 41.667 0.00 0.00 0.00 2.92
1097 1111 5.723405 TGAAAGAGAGATTGAGAGGGATCAA 59.277 40.000 0.00 0.00 43.04 2.57
1098 1112 5.874897 AAGAGAGATTGAGAGGGATCAAG 57.125 43.478 0.00 0.00 42.20 3.02
1099 1113 5.141455 AGAGAGATTGAGAGGGATCAAGA 57.859 43.478 0.00 0.00 42.20 3.02
1100 1114 5.527385 AGAGAGATTGAGAGGGATCAAGAA 58.473 41.667 0.00 0.00 42.20 2.52
1101 1115 6.145336 AGAGAGATTGAGAGGGATCAAGAAT 58.855 40.000 0.00 0.00 42.20 2.40
1102 1116 6.268387 AGAGAGATTGAGAGGGATCAAGAATC 59.732 42.308 0.00 0.00 42.20 2.52
1122 1136 7.730364 GAATCCTAATTCTCGCTATTTGGAA 57.270 36.000 9.67 0.00 39.28 3.53
1123 1137 8.329203 GAATCCTAATTCTCGCTATTTGGAAT 57.671 34.615 9.67 4.15 39.28 3.01
1124 1138 7.678947 ATCCTAATTCTCGCTATTTGGAATG 57.321 36.000 9.67 0.00 39.28 2.67
1125 1139 5.997746 TCCTAATTCTCGCTATTTGGAATGG 59.002 40.000 0.00 0.00 35.13 3.16
1126 1140 5.997746 CCTAATTCTCGCTATTTGGAATGGA 59.002 40.000 0.00 0.00 31.99 3.41
1127 1141 6.656693 CCTAATTCTCGCTATTTGGAATGGAT 59.343 38.462 0.00 0.00 31.99 3.41
1128 1142 6.566197 AATTCTCGCTATTTGGAATGGATC 57.434 37.500 0.00 0.00 0.00 3.36
1145 1159 8.097078 GAATGGATCCAATTCTATTGAGTCTG 57.903 38.462 20.67 0.00 28.21 3.51
1146 1160 6.813293 TGGATCCAATTCTATTGAGTCTGA 57.187 37.500 13.46 0.00 0.00 3.27
1147 1161 6.586344 TGGATCCAATTCTATTGAGTCTGAC 58.414 40.000 13.46 0.00 0.00 3.51
1148 1162 6.385176 TGGATCCAATTCTATTGAGTCTGACT 59.615 38.462 13.46 10.66 0.00 3.41
1149 1163 6.928492 GGATCCAATTCTATTGAGTCTGACTC 59.072 42.308 26.86 26.86 45.26 3.36
1163 1177 7.928908 GAGTCTGACTCATAGTGATCATTTC 57.071 40.000 28.18 0.47 44.45 2.17
1164 1178 7.658525 AGTCTGACTCATAGTGATCATTTCT 57.341 36.000 4.06 0.00 0.00 2.52
1165 1179 7.715657 AGTCTGACTCATAGTGATCATTTCTC 58.284 38.462 4.06 0.00 0.00 2.87
1166 1180 7.560991 AGTCTGACTCATAGTGATCATTTCTCT 59.439 37.037 4.06 0.00 33.00 3.10
1167 1181 8.196771 GTCTGACTCATAGTGATCATTTCTCTT 58.803 37.037 0.00 0.00 30.95 2.85
1168 1182 8.756927 TCTGACTCATAGTGATCATTTCTCTTT 58.243 33.333 0.00 0.00 30.95 2.52
1171 1185 8.885494 ACTCATAGTGATCATTTCTCTTTAGC 57.115 34.615 0.00 0.00 30.95 3.09
1172 1186 8.481314 ACTCATAGTGATCATTTCTCTTTAGCA 58.519 33.333 0.00 0.00 30.95 3.49
1173 1187 9.322773 CTCATAGTGATCATTTCTCTTTAGCAA 57.677 33.333 0.00 0.00 30.95 3.91
1174 1188 9.671279 TCATAGTGATCATTTCTCTTTAGCAAA 57.329 29.630 0.00 0.00 30.95 3.68
1175 1189 9.932699 CATAGTGATCATTTCTCTTTAGCAAAG 57.067 33.333 0.00 3.17 39.88 2.77
1176 1190 9.896645 ATAGTGATCATTTCTCTTTAGCAAAGA 57.103 29.630 0.00 9.84 44.82 2.52
1177 1191 8.627208 AGTGATCATTTCTCTTTAGCAAAGAA 57.373 30.769 0.00 0.00 46.13 2.52
1178 1192 9.240734 AGTGATCATTTCTCTTTAGCAAAGAAT 57.759 29.630 0.00 3.33 46.13 2.40
1179 1193 9.286946 GTGATCATTTCTCTTTAGCAAAGAATG 57.713 33.333 0.00 11.28 46.13 2.67
1180 1194 9.234827 TGATCATTTCTCTTTAGCAAAGAATGA 57.765 29.630 17.29 17.29 46.13 2.57
1181 1195 9.500864 GATCATTTCTCTTTAGCAAAGAATGAC 57.499 33.333 17.30 12.01 46.13 3.06
1182 1196 7.820648 TCATTTCTCTTTAGCAAAGAATGACC 58.179 34.615 14.10 0.00 46.13 4.02
1183 1197 7.667219 TCATTTCTCTTTAGCAAAGAATGACCT 59.333 33.333 14.10 0.00 46.13 3.85
1184 1198 7.823745 TTTCTCTTTAGCAAAGAATGACCTT 57.176 32.000 10.97 0.00 46.13 3.50
1185 1199 6.808008 TCTCTTTAGCAAAGAATGACCTTG 57.192 37.500 10.97 0.00 46.13 3.61
1186 1200 5.707298 TCTCTTTAGCAAAGAATGACCTTGG 59.293 40.000 10.97 0.00 46.13 3.61
1187 1201 5.385198 TCTTTAGCAAAGAATGACCTTGGT 58.615 37.500 8.34 0.00 44.10 3.67
1188 1202 5.833131 TCTTTAGCAAAGAATGACCTTGGTT 59.167 36.000 8.34 0.00 44.10 3.67
1189 1203 7.001674 TCTTTAGCAAAGAATGACCTTGGTTA 58.998 34.615 8.34 0.00 44.10 2.85
1190 1204 7.669722 TCTTTAGCAAAGAATGACCTTGGTTAT 59.330 33.333 8.34 0.00 44.10 1.89
1191 1205 5.904362 AGCAAAGAATGACCTTGGTTATC 57.096 39.130 0.00 0.00 0.00 1.75
1192 1206 5.324409 AGCAAAGAATGACCTTGGTTATCA 58.676 37.500 0.00 0.00 0.00 2.15
1193 1207 5.774690 AGCAAAGAATGACCTTGGTTATCAA 59.225 36.000 0.00 0.00 0.00 2.57
1194 1208 6.267471 AGCAAAGAATGACCTTGGTTATCAAA 59.733 34.615 0.00 0.00 34.56 2.69
1195 1209 6.587608 GCAAAGAATGACCTTGGTTATCAAAG 59.412 38.462 0.00 0.00 34.56 2.77
1196 1210 6.840780 AAGAATGACCTTGGTTATCAAAGG 57.159 37.500 5.52 5.52 34.56 3.11
1197 1211 6.139679 AGAATGACCTTGGTTATCAAAGGA 57.860 37.500 13.12 0.00 34.56 3.36
1198 1212 6.735556 AGAATGACCTTGGTTATCAAAGGAT 58.264 36.000 13.12 0.00 34.56 3.24
1199 1213 7.184862 AGAATGACCTTGGTTATCAAAGGATT 58.815 34.615 13.12 4.29 34.56 3.01
1200 1214 6.780457 ATGACCTTGGTTATCAAAGGATTG 57.220 37.500 13.12 0.00 37.92 2.67
1214 1228 1.064685 AGGATTGAACAACCGGGATCC 60.065 52.381 6.32 1.92 34.62 3.36
1409 1704 4.922206 TCAGTAATGAGAAATGGGCTGTT 58.078 39.130 0.00 0.00 0.00 3.16
1430 1725 9.934190 GCTGTTCATTTTTAAAACACATCAAAT 57.066 25.926 0.00 0.00 0.00 2.32
1611 1910 4.800993 CCGCACCGAAATATGCAAAATTTA 59.199 37.500 9.62 0.00 42.17 1.40
1653 1953 2.957680 CCACAATATGGGCTGTAATGCA 59.042 45.455 0.00 0.00 45.95 3.96
1671 1971 8.370940 TGTAATGCAAACAAAAAGAATATGGGA 58.629 29.630 2.95 0.00 0.00 4.37
2001 2306 0.459585 GCTGTTATTCTCCGGCGACA 60.460 55.000 9.30 1.08 0.00 4.35
2079 2384 0.259356 CCGAGTCTTCCCTACCTCCT 59.741 60.000 0.00 0.00 0.00 3.69
2081 2386 2.458620 CGAGTCTTCCCTACCTCCTTT 58.541 52.381 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.244651 GCCGTCGCCGCAGATTAAT 61.245 57.895 0.00 0.00 0.00 1.40
96 97 2.188161 CGGAGAGGAGTACGAGGGC 61.188 68.421 0.00 0.00 0.00 5.19
143 144 1.112113 GAAGGGGACGATGTAGAGCA 58.888 55.000 0.00 0.00 0.00 4.26
149 150 1.049289 GCCTAGGAAGGGGACGATGT 61.049 60.000 14.75 0.00 43.87 3.06
236 246 1.402259 CAGCCTCTCCACGTACAGTAG 59.598 57.143 0.00 0.00 0.00 2.57
320 331 2.682494 GGTCCCCGCTGTCAGGTA 60.682 66.667 1.14 0.00 0.00 3.08
342 353 0.696501 AAAATACTGGTGGCCCGTCT 59.303 50.000 0.00 0.00 0.00 4.18
507 520 2.931107 CACCAAGGTGGGTCCCAA 59.069 61.111 13.78 0.00 43.37 4.12
528 541 0.838122 AGTAGGCCCACAAGTCAGCT 60.838 55.000 3.54 0.00 0.00 4.24
697 711 3.790437 ACGGGAGGCAGGAGCATG 61.790 66.667 0.00 0.00 44.61 4.06
698 712 3.790437 CACGGGAGGCAGGAGCAT 61.790 66.667 0.00 0.00 44.61 3.79
738 752 0.763223 AATAGTAGGGGGCGGTGAGG 60.763 60.000 0.00 0.00 0.00 3.86
739 753 0.680061 GAATAGTAGGGGGCGGTGAG 59.320 60.000 0.00 0.00 0.00 3.51
740 754 0.761702 GGAATAGTAGGGGGCGGTGA 60.762 60.000 0.00 0.00 0.00 4.02
741 755 1.752833 GGAATAGTAGGGGGCGGTG 59.247 63.158 0.00 0.00 0.00 4.94
742 756 1.460882 GGGAATAGTAGGGGGCGGT 60.461 63.158 0.00 0.00 0.00 5.68
743 757 1.460689 TGGGAATAGTAGGGGGCGG 60.461 63.158 0.00 0.00 0.00 6.13
744 758 1.752833 GTGGGAATAGTAGGGGGCG 59.247 63.158 0.00 0.00 0.00 6.13
745 759 1.765597 CGGTGGGAATAGTAGGGGGC 61.766 65.000 0.00 0.00 0.00 5.80
746 760 0.399519 ACGGTGGGAATAGTAGGGGG 60.400 60.000 0.00 0.00 0.00 5.40
747 761 1.140252 CAACGGTGGGAATAGTAGGGG 59.860 57.143 0.00 0.00 0.00 4.79
748 762 1.140252 CCAACGGTGGGAATAGTAGGG 59.860 57.143 13.17 0.00 41.77 3.53
749 763 1.474498 GCCAACGGTGGGAATAGTAGG 60.474 57.143 23.69 0.00 46.09 3.18
750 764 1.474498 GGCCAACGGTGGGAATAGTAG 60.474 57.143 23.69 0.00 46.09 2.57
751 765 0.542805 GGCCAACGGTGGGAATAGTA 59.457 55.000 23.69 0.00 46.09 1.82
752 766 1.301954 GGCCAACGGTGGGAATAGT 59.698 57.895 23.69 0.00 46.09 2.12
753 767 0.748005 CTGGCCAACGGTGGGAATAG 60.748 60.000 23.69 0.00 46.09 1.73
754 768 1.301623 CTGGCCAACGGTGGGAATA 59.698 57.895 23.69 0.00 46.09 1.75
755 769 2.035626 CTGGCCAACGGTGGGAAT 59.964 61.111 23.69 0.00 46.09 3.01
756 770 4.278513 CCTGGCCAACGGTGGGAA 62.279 66.667 23.69 0.00 46.09 3.97
783 797 4.314440 TGGTGTGAGGCTGCCGTC 62.314 66.667 13.96 11.66 0.00 4.79
784 798 4.626081 GTGGTGTGAGGCTGCCGT 62.626 66.667 13.96 1.21 0.00 5.68
785 799 4.624364 TGTGGTGTGAGGCTGCCG 62.624 66.667 13.96 0.00 0.00 5.69
786 800 2.670934 CTGTGGTGTGAGGCTGCC 60.671 66.667 11.65 11.65 0.00 4.85
787 801 3.360340 GCTGTGGTGTGAGGCTGC 61.360 66.667 0.00 0.00 0.00 5.25
788 802 2.670934 GGCTGTGGTGTGAGGCTG 60.671 66.667 0.00 0.00 0.00 4.85
789 803 4.320456 CGGCTGTGGTGTGAGGCT 62.320 66.667 0.00 0.00 32.68 4.58
790 804 3.825160 TTCGGCTGTGGTGTGAGGC 62.825 63.158 0.00 0.00 0.00 4.70
791 805 1.961277 GTTCGGCTGTGGTGTGAGG 60.961 63.158 0.00 0.00 0.00 3.86
792 806 1.961277 GGTTCGGCTGTGGTGTGAG 60.961 63.158 0.00 0.00 0.00 3.51
793 807 2.110213 GGTTCGGCTGTGGTGTGA 59.890 61.111 0.00 0.00 0.00 3.58
794 808 2.203139 TGGTTCGGCTGTGGTGTG 60.203 61.111 0.00 0.00 0.00 3.82
795 809 2.111043 CTGGTTCGGCTGTGGTGT 59.889 61.111 0.00 0.00 0.00 4.16
796 810 2.111043 ACTGGTTCGGCTGTGGTG 59.889 61.111 0.00 0.00 0.00 4.17
797 811 1.978455 TTCACTGGTTCGGCTGTGGT 61.978 55.000 0.00 0.00 0.00 4.16
798 812 1.227823 TTCACTGGTTCGGCTGTGG 60.228 57.895 0.00 0.00 0.00 4.17
799 813 1.507141 GGTTCACTGGTTCGGCTGTG 61.507 60.000 0.00 0.00 0.00 3.66
800 814 1.227853 GGTTCACTGGTTCGGCTGT 60.228 57.895 0.00 0.00 0.00 4.40
801 815 1.966451 GGGTTCACTGGTTCGGCTG 60.966 63.158 0.00 0.00 0.00 4.85
802 816 2.113243 GAGGGTTCACTGGTTCGGCT 62.113 60.000 0.00 0.00 0.00 5.52
803 817 1.671379 GAGGGTTCACTGGTTCGGC 60.671 63.158 0.00 0.00 0.00 5.54
804 818 1.374252 CGAGGGTTCACTGGTTCGG 60.374 63.158 0.00 0.00 0.00 4.30
805 819 0.599558 TACGAGGGTTCACTGGTTCG 59.400 55.000 0.00 0.00 31.65 3.95
806 820 1.617357 AGTACGAGGGTTCACTGGTTC 59.383 52.381 0.00 0.00 31.65 3.62
807 821 1.617357 GAGTACGAGGGTTCACTGGTT 59.383 52.381 0.00 0.00 31.65 3.67
808 822 1.254954 GAGTACGAGGGTTCACTGGT 58.745 55.000 0.00 0.00 33.82 4.00
809 823 0.531200 GGAGTACGAGGGTTCACTGG 59.469 60.000 0.00 0.00 0.00 4.00
810 824 1.473278 GAGGAGTACGAGGGTTCACTG 59.527 57.143 0.00 0.00 0.00 3.66
811 825 1.355043 AGAGGAGTACGAGGGTTCACT 59.645 52.381 0.00 0.00 0.00 3.41
812 826 1.744522 GAGAGGAGTACGAGGGTTCAC 59.255 57.143 0.00 0.00 0.00 3.18
813 827 1.340795 GGAGAGGAGTACGAGGGTTCA 60.341 57.143 0.00 0.00 0.00 3.18
814 828 1.391577 GGAGAGGAGTACGAGGGTTC 58.608 60.000 0.00 0.00 0.00 3.62
815 829 0.394080 CGGAGAGGAGTACGAGGGTT 60.394 60.000 0.00 0.00 0.00 4.11
816 830 1.224039 CGGAGAGGAGTACGAGGGT 59.776 63.158 0.00 0.00 0.00 4.34
817 831 2.188161 GCGGAGAGGAGTACGAGGG 61.188 68.421 0.00 0.00 0.00 4.30
818 832 2.535788 CGCGGAGAGGAGTACGAGG 61.536 68.421 0.00 0.00 0.00 4.63
819 833 3.015677 CGCGGAGAGGAGTACGAG 58.984 66.667 0.00 0.00 0.00 4.18
820 834 3.200593 GCGCGGAGAGGAGTACGA 61.201 66.667 8.83 0.00 0.00 3.43
821 835 4.592936 CGCGCGGAGAGGAGTACG 62.593 72.222 24.84 0.00 0.00 3.67
822 836 4.253257 CCGCGCGGAGAGGAGTAC 62.253 72.222 44.86 0.00 43.02 2.73
840 854 1.569479 GAAGACGTGGCAGTGGAAGC 61.569 60.000 0.00 0.00 0.00 3.86
841 855 0.951040 GGAAGACGTGGCAGTGGAAG 60.951 60.000 0.00 0.00 0.00 3.46
842 856 1.070786 GGAAGACGTGGCAGTGGAA 59.929 57.895 0.00 0.00 0.00 3.53
843 857 2.741092 GGAAGACGTGGCAGTGGA 59.259 61.111 0.00 0.00 0.00 4.02
844 858 2.358737 GGGAAGACGTGGCAGTGG 60.359 66.667 0.00 0.00 0.00 4.00
845 859 2.358737 GGGGAAGACGTGGCAGTG 60.359 66.667 0.00 0.00 0.00 3.66
846 860 4.003788 CGGGGAAGACGTGGCAGT 62.004 66.667 0.00 0.00 0.00 4.40
847 861 4.760047 CCGGGGAAGACGTGGCAG 62.760 72.222 0.00 0.00 0.00 4.85
850 864 4.452733 GAGCCGGGGAAGACGTGG 62.453 72.222 2.18 0.00 0.00 4.94
851 865 4.452733 GGAGCCGGGGAAGACGTG 62.453 72.222 2.18 0.00 0.00 4.49
865 879 4.493747 GAAGGGGACGACGCGGAG 62.494 72.222 12.47 6.26 37.07 4.63
868 882 3.122250 CTAGGAAGGGGACGACGCG 62.122 68.421 3.53 3.53 37.07 6.01
869 883 2.783288 CCTAGGAAGGGGACGACGC 61.783 68.421 1.05 0.00 39.48 5.19
870 884 2.783288 GCCTAGGAAGGGGACGACG 61.783 68.421 14.75 0.00 43.87 5.12
871 885 2.433146 GGCCTAGGAAGGGGACGAC 61.433 68.421 14.75 0.00 43.87 4.34
872 886 2.042230 GGCCTAGGAAGGGGACGA 60.042 66.667 14.75 0.00 43.87 4.20
873 887 2.041819 AGGCCTAGGAAGGGGACG 60.042 66.667 14.75 0.00 43.87 4.79
874 888 2.134933 CGAGGCCTAGGAAGGGGAC 61.135 68.421 14.75 0.00 43.87 4.46
875 889 2.282446 CGAGGCCTAGGAAGGGGA 59.718 66.667 14.75 0.00 43.87 4.81
876 890 3.551407 GCGAGGCCTAGGAAGGGG 61.551 72.222 14.75 0.00 43.87 4.79
877 891 3.551407 GGCGAGGCCTAGGAAGGG 61.551 72.222 14.75 0.00 46.69 3.95
927 941 2.444700 ATCCCGACCACGTTGACCAC 62.445 60.000 0.00 0.00 37.88 4.16
928 942 2.162338 GATCCCGACCACGTTGACCA 62.162 60.000 0.00 0.00 37.88 4.02
929 943 1.447314 GATCCCGACCACGTTGACC 60.447 63.158 0.00 0.00 37.88 4.02
930 944 0.108329 ATGATCCCGACCACGTTGAC 60.108 55.000 0.00 0.00 37.88 3.18
931 945 0.174845 GATGATCCCGACCACGTTGA 59.825 55.000 0.00 0.00 37.88 3.18
932 946 1.145759 CGATGATCCCGACCACGTTG 61.146 60.000 0.00 0.00 37.88 4.10
933 947 1.141019 CGATGATCCCGACCACGTT 59.859 57.895 0.00 0.00 37.88 3.99
934 948 0.749091 TACGATGATCCCGACCACGT 60.749 55.000 10.92 0.00 37.88 4.49
935 949 0.317603 GTACGATGATCCCGACCACG 60.318 60.000 10.92 0.00 39.43 4.94
936 950 0.742505 TGTACGATGATCCCGACCAC 59.257 55.000 10.92 6.68 0.00 4.16
937 951 1.611977 GATGTACGATGATCCCGACCA 59.388 52.381 10.92 7.28 0.00 4.02
938 952 1.401148 CGATGTACGATGATCCCGACC 60.401 57.143 10.92 2.69 45.77 4.79
939 953 1.266175 ACGATGTACGATGATCCCGAC 59.734 52.381 10.92 6.11 45.77 4.79
940 954 1.601166 ACGATGTACGATGATCCCGA 58.399 50.000 10.92 0.00 45.77 5.14
941 955 3.547649 TTACGATGTACGATGATCCCG 57.452 47.619 0.00 3.46 45.77 5.14
942 956 6.309737 GGTTATTTACGATGTACGATGATCCC 59.690 42.308 0.00 0.00 45.77 3.85
943 957 6.864685 TGGTTATTTACGATGTACGATGATCC 59.135 38.462 0.00 0.00 45.77 3.36
944 958 7.862741 TGGTTATTTACGATGTACGATGATC 57.137 36.000 0.00 0.00 45.77 2.92
945 959 8.827177 ATTGGTTATTTACGATGTACGATGAT 57.173 30.769 0.00 0.00 45.77 2.45
946 960 8.651391 AATTGGTTATTTACGATGTACGATGA 57.349 30.769 0.00 0.00 45.77 2.92
947 961 9.710979 AAAATTGGTTATTTACGATGTACGATG 57.289 29.630 0.00 0.00 38.67 3.84
948 962 9.925268 GAAAATTGGTTATTTACGATGTACGAT 57.075 29.630 0.00 0.00 38.67 3.73
949 963 8.933807 TGAAAATTGGTTATTTACGATGTACGA 58.066 29.630 0.00 0.00 38.67 3.43
950 964 9.710979 ATGAAAATTGGTTATTTACGATGTACG 57.289 29.630 0.00 0.00 40.55 3.67
998 1012 9.669353 CATCTCGGAATATTTTCGATTTCATTT 57.331 29.630 12.88 0.00 32.28 2.32
999 1013 8.292448 CCATCTCGGAATATTTTCGATTTCATT 58.708 33.333 12.88 0.00 36.56 2.57
1000 1014 7.573843 GCCATCTCGGAATATTTTCGATTTCAT 60.574 37.037 12.88 4.13 36.56 2.57
1001 1015 6.293407 GCCATCTCGGAATATTTTCGATTTCA 60.293 38.462 12.88 2.52 36.56 2.69
1002 1016 6.080406 GCCATCTCGGAATATTTTCGATTTC 58.920 40.000 12.88 0.00 36.56 2.17
1003 1017 5.530915 TGCCATCTCGGAATATTTTCGATTT 59.469 36.000 12.88 4.30 36.56 2.17
1004 1018 5.063204 TGCCATCTCGGAATATTTTCGATT 58.937 37.500 12.88 4.56 36.56 3.34
1005 1019 4.641396 TGCCATCTCGGAATATTTTCGAT 58.359 39.130 12.88 1.61 36.56 3.59
1006 1020 4.066646 TGCCATCTCGGAATATTTTCGA 57.933 40.909 12.20 12.20 36.56 3.71
1007 1021 4.811555 TTGCCATCTCGGAATATTTTCG 57.188 40.909 5.99 5.99 36.56 3.46
1008 1022 9.346725 GAATATTTGCCATCTCGGAATATTTTC 57.653 33.333 0.00 0.00 36.56 2.29
1009 1023 8.023128 CGAATATTTGCCATCTCGGAATATTTT 58.977 33.333 0.00 0.00 36.56 1.82
1010 1024 7.362056 CCGAATATTTGCCATCTCGGAATATTT 60.362 37.037 2.19 0.00 46.83 1.40
1011 1025 6.094048 CCGAATATTTGCCATCTCGGAATATT 59.906 38.462 2.19 0.00 46.83 1.28
1012 1026 5.586243 CCGAATATTTGCCATCTCGGAATAT 59.414 40.000 2.19 0.00 46.83 1.28
1013 1027 4.935205 CCGAATATTTGCCATCTCGGAATA 59.065 41.667 2.19 0.00 46.83 1.75
1014 1028 3.753272 CCGAATATTTGCCATCTCGGAAT 59.247 43.478 2.19 0.00 46.83 3.01
1015 1029 3.138304 CCGAATATTTGCCATCTCGGAA 58.862 45.455 2.19 0.00 46.83 4.30
1016 1030 2.766313 CCGAATATTTGCCATCTCGGA 58.234 47.619 2.19 0.00 46.83 4.55
1017 1031 2.738846 CTCCGAATATTTGCCATCTCGG 59.261 50.000 1.95 1.95 45.59 4.63
1018 1032 3.653344 TCTCCGAATATTTGCCATCTCG 58.347 45.455 0.00 0.00 0.00 4.04
1019 1033 5.121454 GTCATCTCCGAATATTTGCCATCTC 59.879 44.000 0.00 0.00 0.00 2.75
1020 1034 4.999950 GTCATCTCCGAATATTTGCCATCT 59.000 41.667 0.00 0.00 0.00 2.90
1021 1035 4.999950 AGTCATCTCCGAATATTTGCCATC 59.000 41.667 0.00 0.00 0.00 3.51
1022 1036 4.978099 AGTCATCTCCGAATATTTGCCAT 58.022 39.130 0.00 0.00 0.00 4.40
1023 1037 4.422073 AGTCATCTCCGAATATTTGCCA 57.578 40.909 0.00 0.00 0.00 4.92
1024 1038 6.166279 TCATAGTCATCTCCGAATATTTGCC 58.834 40.000 0.00 0.00 0.00 4.52
1025 1039 7.658179 TTCATAGTCATCTCCGAATATTTGC 57.342 36.000 0.00 0.00 0.00 3.68
1026 1040 9.869844 GTTTTCATAGTCATCTCCGAATATTTG 57.130 33.333 0.00 0.00 0.00 2.32
1027 1041 9.613428 TGTTTTCATAGTCATCTCCGAATATTT 57.387 29.630 0.00 0.00 0.00 1.40
1028 1042 9.046296 GTGTTTTCATAGTCATCTCCGAATATT 57.954 33.333 0.00 0.00 0.00 1.28
1029 1043 7.657761 GGTGTTTTCATAGTCATCTCCGAATAT 59.342 37.037 0.00 0.00 0.00 1.28
1030 1044 6.984474 GGTGTTTTCATAGTCATCTCCGAATA 59.016 38.462 0.00 0.00 0.00 1.75
1031 1045 5.817816 GGTGTTTTCATAGTCATCTCCGAAT 59.182 40.000 0.00 0.00 0.00 3.34
1032 1046 5.046591 AGGTGTTTTCATAGTCATCTCCGAA 60.047 40.000 0.00 0.00 0.00 4.30
1033 1047 4.466370 AGGTGTTTTCATAGTCATCTCCGA 59.534 41.667 0.00 0.00 0.00 4.55
1034 1048 4.759782 AGGTGTTTTCATAGTCATCTCCG 58.240 43.478 0.00 0.00 0.00 4.63
1035 1049 5.983540 AGAGGTGTTTTCATAGTCATCTCC 58.016 41.667 0.00 0.00 38.39 3.71
1036 1050 6.756074 CAGAGAGGTGTTTTCATAGTCATCTC 59.244 42.308 0.00 0.00 38.05 2.75
1037 1051 6.351711 CCAGAGAGGTGTTTTCATAGTCATCT 60.352 42.308 0.00 0.00 0.00 2.90
1038 1052 5.814705 CCAGAGAGGTGTTTTCATAGTCATC 59.185 44.000 0.00 0.00 0.00 2.92
1039 1053 5.485353 TCCAGAGAGGTGTTTTCATAGTCAT 59.515 40.000 0.00 0.00 39.02 3.06
1040 1054 4.838423 TCCAGAGAGGTGTTTTCATAGTCA 59.162 41.667 0.00 0.00 39.02 3.41
1041 1055 5.407407 TCCAGAGAGGTGTTTTCATAGTC 57.593 43.478 0.00 0.00 39.02 2.59
1042 1056 5.104735 GGATCCAGAGAGGTGTTTTCATAGT 60.105 44.000 6.95 0.00 39.02 2.12
1043 1057 5.130145 AGGATCCAGAGAGGTGTTTTCATAG 59.870 44.000 15.82 0.00 39.02 2.23
1044 1058 5.032846 AGGATCCAGAGAGGTGTTTTCATA 58.967 41.667 15.82 0.00 39.02 2.15
1045 1059 3.848975 AGGATCCAGAGAGGTGTTTTCAT 59.151 43.478 15.82 0.00 39.02 2.57
1046 1060 3.251484 AGGATCCAGAGAGGTGTTTTCA 58.749 45.455 15.82 0.00 39.02 2.69
1047 1061 3.677424 CGAGGATCCAGAGAGGTGTTTTC 60.677 52.174 15.82 0.00 39.02 2.29
1048 1062 2.234908 CGAGGATCCAGAGAGGTGTTTT 59.765 50.000 15.82 0.00 39.02 2.43
1049 1063 1.827969 CGAGGATCCAGAGAGGTGTTT 59.172 52.381 15.82 0.00 39.02 2.83
1050 1064 1.006043 TCGAGGATCCAGAGAGGTGTT 59.994 52.381 15.82 0.00 39.02 3.32
1051 1065 0.626382 TCGAGGATCCAGAGAGGTGT 59.374 55.000 15.82 0.00 39.02 4.16
1052 1066 1.769026 TTCGAGGATCCAGAGAGGTG 58.231 55.000 15.82 0.00 39.02 4.00
1053 1067 2.697751 CAATTCGAGGATCCAGAGAGGT 59.302 50.000 15.82 0.00 39.02 3.85
1054 1068 2.961741 TCAATTCGAGGATCCAGAGAGG 59.038 50.000 15.82 6.22 39.47 3.69
1055 1069 4.662468 TTCAATTCGAGGATCCAGAGAG 57.338 45.455 15.82 6.87 0.00 3.20
1056 1070 4.711846 TCTTTCAATTCGAGGATCCAGAGA 59.288 41.667 15.82 7.13 0.00 3.10
1057 1071 5.016051 TCTTTCAATTCGAGGATCCAGAG 57.984 43.478 15.82 4.59 0.00 3.35
1058 1072 4.711846 TCTCTTTCAATTCGAGGATCCAGA 59.288 41.667 15.82 10.27 0.00 3.86
1059 1073 5.016051 TCTCTTTCAATTCGAGGATCCAG 57.984 43.478 15.82 7.77 0.00 3.86
1060 1074 4.711846 TCTCTCTTTCAATTCGAGGATCCA 59.288 41.667 15.82 0.00 0.00 3.41
1061 1075 5.269505 TCTCTCTTTCAATTCGAGGATCC 57.730 43.478 2.48 2.48 0.00 3.36
1062 1076 6.983307 TCAATCTCTCTTTCAATTCGAGGATC 59.017 38.462 0.00 0.00 0.00 3.36
1063 1077 6.882656 TCAATCTCTCTTTCAATTCGAGGAT 58.117 36.000 0.00 0.00 0.00 3.24
1064 1078 6.153510 TCTCAATCTCTCTTTCAATTCGAGGA 59.846 38.462 0.00 0.00 0.00 3.71
1065 1079 6.336566 TCTCAATCTCTCTTTCAATTCGAGG 58.663 40.000 0.00 0.00 0.00 4.63
1066 1080 6.476380 CCTCTCAATCTCTCTTTCAATTCGAG 59.524 42.308 0.00 0.00 0.00 4.04
1067 1081 6.336566 CCTCTCAATCTCTCTTTCAATTCGA 58.663 40.000 0.00 0.00 0.00 3.71
1068 1082 5.523188 CCCTCTCAATCTCTCTTTCAATTCG 59.477 44.000 0.00 0.00 0.00 3.34
1069 1083 6.648192 TCCCTCTCAATCTCTCTTTCAATTC 58.352 40.000 0.00 0.00 0.00 2.17
1070 1084 6.633325 TCCCTCTCAATCTCTCTTTCAATT 57.367 37.500 0.00 0.00 0.00 2.32
1071 1085 6.386342 TGATCCCTCTCAATCTCTCTTTCAAT 59.614 38.462 0.00 0.00 0.00 2.57
1072 1086 5.723405 TGATCCCTCTCAATCTCTCTTTCAA 59.277 40.000 0.00 0.00 0.00 2.69
1073 1087 5.275630 TGATCCCTCTCAATCTCTCTTTCA 58.724 41.667 0.00 0.00 0.00 2.69
1074 1088 5.867903 TGATCCCTCTCAATCTCTCTTTC 57.132 43.478 0.00 0.00 0.00 2.62
1075 1089 5.963253 TCTTGATCCCTCTCAATCTCTCTTT 59.037 40.000 0.00 0.00 34.76 2.52
1076 1090 5.527385 TCTTGATCCCTCTCAATCTCTCTT 58.473 41.667 0.00 0.00 34.76 2.85
1077 1091 5.141455 TCTTGATCCCTCTCAATCTCTCT 57.859 43.478 0.00 0.00 34.76 3.10
1078 1092 5.867903 TTCTTGATCCCTCTCAATCTCTC 57.132 43.478 0.00 0.00 34.76 3.20
1079 1093 6.423776 GATTCTTGATCCCTCTCAATCTCT 57.576 41.667 0.00 0.00 34.76 3.10
1098 1112 7.730364 TTCCAAATAGCGAGAATTAGGATTC 57.270 36.000 0.00 0.00 41.63 2.52
1099 1113 7.175641 CCATTCCAAATAGCGAGAATTAGGATT 59.824 37.037 0.00 0.00 0.00 3.01
1100 1114 6.656693 CCATTCCAAATAGCGAGAATTAGGAT 59.343 38.462 0.00 0.00 0.00 3.24
1101 1115 5.997746 CCATTCCAAATAGCGAGAATTAGGA 59.002 40.000 0.00 0.00 0.00 2.94
1102 1116 5.997746 TCCATTCCAAATAGCGAGAATTAGG 59.002 40.000 0.00 0.00 0.00 2.69
1103 1117 7.148340 GGATCCATTCCAAATAGCGAGAATTAG 60.148 40.741 6.95 0.00 44.74 1.73
1104 1118 6.655003 GGATCCATTCCAAATAGCGAGAATTA 59.345 38.462 6.95 0.00 44.74 1.40
1105 1119 5.474876 GGATCCATTCCAAATAGCGAGAATT 59.525 40.000 6.95 0.00 44.74 2.17
1106 1120 5.006386 GGATCCATTCCAAATAGCGAGAAT 58.994 41.667 6.95 0.00 44.74 2.40
1107 1121 4.389374 GGATCCATTCCAAATAGCGAGAA 58.611 43.478 6.95 0.00 44.74 2.87
1108 1122 4.008074 GGATCCATTCCAAATAGCGAGA 57.992 45.455 6.95 0.00 44.74 4.04
1119 1133 7.174599 CAGACTCAATAGAATTGGATCCATTCC 59.825 40.741 17.06 7.45 45.69 3.01
1120 1134 7.935755 TCAGACTCAATAGAATTGGATCCATTC 59.064 37.037 17.06 19.35 0.00 2.67
1121 1135 7.718753 GTCAGACTCAATAGAATTGGATCCATT 59.281 37.037 17.06 9.61 0.00 3.16
1122 1136 7.072202 AGTCAGACTCAATAGAATTGGATCCAT 59.928 37.037 17.06 0.06 0.00 3.41
1123 1137 6.385176 AGTCAGACTCAATAGAATTGGATCCA 59.615 38.462 11.44 11.44 0.00 3.41
1124 1138 6.825610 AGTCAGACTCAATAGAATTGGATCC 58.174 40.000 4.20 4.20 0.00 3.36
1125 1139 7.945033 GAGTCAGACTCAATAGAATTGGATC 57.055 40.000 23.62 0.00 44.45 3.36
1139 1153 7.715657 AGAAATGATCACTATGAGTCAGACTC 58.284 38.462 22.09 22.09 45.26 3.36
1140 1154 7.560991 AGAGAAATGATCACTATGAGTCAGACT 59.439 37.037 1.46 1.46 0.00 3.24
1141 1155 7.715657 AGAGAAATGATCACTATGAGTCAGAC 58.284 38.462 0.00 0.00 0.00 3.51
1142 1156 7.894753 AGAGAAATGATCACTATGAGTCAGA 57.105 36.000 0.00 0.00 0.00 3.27
1143 1157 8.945481 AAAGAGAAATGATCACTATGAGTCAG 57.055 34.615 0.00 0.00 0.00 3.51
1145 1159 8.977505 GCTAAAGAGAAATGATCACTATGAGTC 58.022 37.037 0.00 0.00 0.00 3.36
1146 1160 8.481314 TGCTAAAGAGAAATGATCACTATGAGT 58.519 33.333 0.00 0.00 0.00 3.41
1147 1161 8.883954 TGCTAAAGAGAAATGATCACTATGAG 57.116 34.615 0.00 0.00 0.00 2.90
1148 1162 9.671279 TTTGCTAAAGAGAAATGATCACTATGA 57.329 29.630 0.00 0.00 0.00 2.15
1149 1163 9.932699 CTTTGCTAAAGAGAAATGATCACTATG 57.067 33.333 0.00 0.00 41.02 2.23
1150 1164 9.896645 TCTTTGCTAAAGAGAAATGATCACTAT 57.103 29.630 0.00 0.00 42.31 2.12
1164 1178 5.385198 ACCAAGGTCATTCTTTGCTAAAGA 58.615 37.500 7.09 7.09 45.30 2.52
1165 1179 5.712152 ACCAAGGTCATTCTTTGCTAAAG 57.288 39.130 0.00 0.00 39.88 1.85
1166 1180 7.450014 TGATAACCAAGGTCATTCTTTGCTAAA 59.550 33.333 0.00 0.00 32.75 1.85
1167 1181 6.945435 TGATAACCAAGGTCATTCTTTGCTAA 59.055 34.615 0.00 0.00 32.75 3.09
1168 1182 6.480763 TGATAACCAAGGTCATTCTTTGCTA 58.519 36.000 0.00 0.00 32.75 3.49
1169 1183 5.324409 TGATAACCAAGGTCATTCTTTGCT 58.676 37.500 0.00 0.00 32.75 3.91
1170 1184 5.643379 TGATAACCAAGGTCATTCTTTGC 57.357 39.130 0.00 0.00 32.75 3.68
1171 1185 7.039784 TCCTTTGATAACCAAGGTCATTCTTTG 60.040 37.037 3.22 0.00 35.94 2.77
1172 1186 7.010160 TCCTTTGATAACCAAGGTCATTCTTT 58.990 34.615 3.22 0.00 35.94 2.52
1173 1187 6.552008 TCCTTTGATAACCAAGGTCATTCTT 58.448 36.000 3.22 0.00 35.94 2.52
1174 1188 6.139679 TCCTTTGATAACCAAGGTCATTCT 57.860 37.500 3.22 0.00 35.94 2.40
1175 1189 7.122650 TCAATCCTTTGATAACCAAGGTCATTC 59.877 37.037 3.22 0.00 36.94 2.67
1176 1190 6.953520 TCAATCCTTTGATAACCAAGGTCATT 59.046 34.615 3.22 0.00 36.94 2.57
1177 1191 6.493166 TCAATCCTTTGATAACCAAGGTCAT 58.507 36.000 3.22 0.00 36.94 3.06
1178 1192 5.886609 TCAATCCTTTGATAACCAAGGTCA 58.113 37.500 3.22 0.00 36.94 4.02
1179 1193 6.208599 TGTTCAATCCTTTGATAACCAAGGTC 59.791 38.462 3.22 0.00 41.38 3.85
1180 1194 6.074648 TGTTCAATCCTTTGATAACCAAGGT 58.925 36.000 3.22 0.00 41.38 3.50
1181 1195 6.588719 TGTTCAATCCTTTGATAACCAAGG 57.411 37.500 0.00 0.00 41.38 3.61
1182 1196 6.868339 GGTTGTTCAATCCTTTGATAACCAAG 59.132 38.462 19.64 0.00 46.24 3.61
1183 1197 6.515862 CGGTTGTTCAATCCTTTGATAACCAA 60.516 38.462 21.90 9.40 46.69 3.67
1184 1198 5.048364 CGGTTGTTCAATCCTTTGATAACCA 60.048 40.000 21.90 5.61 46.69 3.67
1185 1199 5.399013 CGGTTGTTCAATCCTTTGATAACC 58.601 41.667 17.03 17.03 45.11 2.85
1186 1200 5.399013 CCGGTTGTTCAATCCTTTGATAAC 58.601 41.667 0.00 0.00 41.38 1.89
1187 1201 4.461081 CCCGGTTGTTCAATCCTTTGATAA 59.539 41.667 0.00 0.00 41.38 1.75
1188 1202 4.013728 CCCGGTTGTTCAATCCTTTGATA 58.986 43.478 0.00 0.00 41.38 2.15
1189 1203 2.825532 CCCGGTTGTTCAATCCTTTGAT 59.174 45.455 0.00 0.00 41.38 2.57
1190 1204 2.158593 TCCCGGTTGTTCAATCCTTTGA 60.159 45.455 0.00 0.00 40.09 2.69
1191 1205 2.235016 TCCCGGTTGTTCAATCCTTTG 58.765 47.619 0.00 0.00 0.00 2.77
1192 1206 2.668144 TCCCGGTTGTTCAATCCTTT 57.332 45.000 0.00 0.00 0.00 3.11
1193 1207 2.620627 GGATCCCGGTTGTTCAATCCTT 60.621 50.000 0.00 0.00 31.87 3.36
1194 1208 1.064685 GGATCCCGGTTGTTCAATCCT 60.065 52.381 0.00 0.00 31.87 3.24
1195 1209 1.340600 TGGATCCCGGTTGTTCAATCC 60.341 52.381 9.90 1.89 34.54 3.01
1196 1210 2.017049 CTGGATCCCGGTTGTTCAATC 58.983 52.381 9.90 0.00 0.00 2.67
1197 1211 1.340991 CCTGGATCCCGGTTGTTCAAT 60.341 52.381 13.93 0.00 0.00 2.57
1198 1212 0.037590 CCTGGATCCCGGTTGTTCAA 59.962 55.000 13.93 0.00 0.00 2.69
1199 1213 0.838554 TCCTGGATCCCGGTTGTTCA 60.839 55.000 20.59 0.00 0.00 3.18
1200 1214 0.326927 TTCCTGGATCCCGGTTGTTC 59.673 55.000 20.59 0.00 0.00 3.18
1201 1215 0.037734 GTTCCTGGATCCCGGTTGTT 59.962 55.000 20.59 0.00 0.00 2.83
1202 1216 1.683441 GTTCCTGGATCCCGGTTGT 59.317 57.895 20.59 0.00 0.00 3.32
1203 1217 1.449601 CGTTCCTGGATCCCGGTTG 60.450 63.158 20.59 8.94 0.00 3.77
1204 1218 1.611261 TCGTTCCTGGATCCCGGTT 60.611 57.895 20.59 0.00 0.00 4.44
1205 1219 2.038329 TCGTTCCTGGATCCCGGT 59.962 61.111 20.59 0.00 0.00 5.28
1206 1220 1.614241 AAGTCGTTCCTGGATCCCGG 61.614 60.000 15.90 15.90 0.00 5.73
1207 1221 0.179108 GAAGTCGTTCCTGGATCCCG 60.179 60.000 9.90 1.92 0.00 5.14
1208 1222 3.762674 GAAGTCGTTCCTGGATCCC 57.237 57.895 9.90 0.00 0.00 3.85
1338 1632 2.243810 AGCTCTCCTCGTCTTGAAAGT 58.756 47.619 0.00 0.00 0.00 2.66
1409 1704 7.439356 TGCCGATTTGATGTGTTTTAAAAATGA 59.561 29.630 1.31 0.00 0.00 2.57
1430 1725 9.921637 AAAAAGATATTTGAAACTAATTGCCGA 57.078 25.926 0.00 0.00 0.00 5.54
1653 1953 9.859152 TTTTTGGATCCCATATTCTTTTTGTTT 57.141 25.926 9.90 0.00 31.53 2.83
2001 2306 1.270678 GGGTTTACTGGTTCGTCTGCT 60.271 52.381 0.00 0.00 0.00 4.24
2079 2384 0.616891 GCCTAGGAAGGGGACGAAAA 59.383 55.000 14.75 0.00 43.87 2.29
2081 2386 1.688187 GGCCTAGGAAGGGGACGAA 60.688 63.158 14.75 0.00 43.87 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.