Multiple sequence alignment - TraesCS5D01G178400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G178400 chr5D 100.000 7448 0 0 1655 9102 277816069 277823516 0.000000e+00 13754.0
1 TraesCS5D01G178400 chr5D 100.000 1146 0 0 1 1146 277814415 277815560 0.000000e+00 2117.0
2 TraesCS5D01G178400 chr5D 94.220 173 10 0 644 816 321902080 321901908 1.950000e-66 265.0
3 TraesCS5D01G178400 chr5D 100.000 85 0 0 1972 2056 79602488 79602572 3.400000e-34 158.0
4 TraesCS5D01G178400 chr5D 85.417 96 10 1 7696 7787 332041786 332041691 7.520000e-16 97.1
5 TraesCS5D01G178400 chr5D 82.474 97 13 1 7689 7781 34445613 34445517 2.110000e-11 82.4
6 TraesCS5D01G178400 chr5D 87.324 71 2 6 7712 7781 319372109 319372173 3.520000e-09 75.0
7 TraesCS5D01G178400 chr5B 95.502 5602 182 32 2055 7625 315923201 315928763 0.000000e+00 8885.0
8 TraesCS5D01G178400 chr5B 93.841 828 37 5 7626 8444 315928791 315929613 0.000000e+00 1234.0
9 TraesCS5D01G178400 chr5B 88.312 539 51 7 3 541 315921918 315922444 3.580000e-178 636.0
10 TraesCS5D01G178400 chr5B 96.188 341 12 1 807 1146 315922495 315922835 2.870000e-154 556.0
11 TraesCS5D01G178400 chr5B 94.953 317 14 2 1657 1973 315922888 315923202 6.350000e-136 496.0
12 TraesCS5D01G178400 chr5B 92.857 266 19 0 8577 8842 315934104 315934369 3.990000e-103 387.0
13 TraesCS5D01G178400 chr5B 95.475 221 9 1 8369 8589 315929576 315929795 1.450000e-92 351.0
14 TraesCS5D01G178400 chr5B 88.797 241 20 2 8869 9102 315941405 315941645 1.160000e-73 289.0
15 TraesCS5D01G178400 chr5A 96.494 3794 92 18 2055 5833 367127540 367131307 0.000000e+00 6231.0
16 TraesCS5D01G178400 chr5A 94.921 1575 45 14 6056 7625 367131528 367133072 0.000000e+00 2433.0
17 TraesCS5D01G178400 chr5A 95.839 697 21 3 8407 9102 367133868 367134557 0.000000e+00 1120.0
18 TraesCS5D01G178400 chr5A 93.363 663 27 6 7747 8406 367133257 367133905 0.000000e+00 965.0
19 TraesCS5D01G178400 chr5A 83.714 657 63 17 4 649 367126221 367126844 1.700000e-161 580.0
20 TraesCS5D01G178400 chr5A 96.450 338 7 2 809 1146 367126841 367127173 3.710000e-153 553.0
21 TraesCS5D01G178400 chr5A 94.637 317 16 1 1657 1973 367127226 367127541 2.950000e-134 490.0
22 TraesCS5D01G178400 chr5A 93.714 175 9 2 636 810 623489312 623489140 2.520000e-65 261.0
23 TraesCS5D01G178400 chr5A 94.631 149 8 0 5909 6057 367131298 367131446 1.980000e-56 231.0
24 TraesCS5D01G178400 chr5A 91.057 123 11 0 7626 7748 367133101 367133223 5.650000e-37 167.0
25 TraesCS5D01G178400 chr5A 98.876 89 0 1 1969 2056 326533290 326533378 3.400000e-34 158.0
26 TraesCS5D01G178400 chr3D 94.828 174 8 1 645 817 217587559 217587732 4.190000e-68 270.0
27 TraesCS5D01G178400 chr3D 100.000 87 0 0 1972 2058 517884818 517884732 2.630000e-35 161.0
28 TraesCS5D01G178400 chr3D 85.366 82 11 1 7677 7758 563835250 563835170 5.860000e-12 84.2
29 TraesCS5D01G178400 chr3D 95.455 44 2 0 9059 9102 600600273 600600230 4.560000e-08 71.3
30 TraesCS5D01G178400 chr2A 93.407 182 9 3 643 822 158458811 158458631 5.420000e-67 267.0
31 TraesCS5D01G178400 chr2A 83.333 96 11 4 7685 7779 52122933 52122842 5.860000e-12 84.2
32 TraesCS5D01G178400 chr2A 83.333 96 11 1 7692 7782 684265810 684265715 5.860000e-12 84.2
33 TraesCS5D01G178400 chr3B 94.186 172 10 0 639 810 342882171 342882342 7.010000e-66 263.0
34 TraesCS5D01G178400 chr2B 92.147 191 8 6 632 815 404425934 404425744 7.010000e-66 263.0
35 TraesCS5D01G178400 chr2B 93.258 178 9 3 634 811 28427164 28427338 9.070000e-65 259.0
36 TraesCS5D01G178400 chr2D 93.714 175 9 2 644 818 620615644 620615816 2.520000e-65 261.0
37 TraesCS5D01G178400 chr2D 84.706 85 7 5 7697 7781 79445897 79445975 7.580000e-11 80.5
38 TraesCS5D01G178400 chr2D 95.455 44 2 0 9059 9102 102275201 102275244 4.560000e-08 71.3
39 TraesCS5D01G178400 chr7D 92.697 178 11 2 642 818 513817906 513817730 1.170000e-63 255.0
40 TraesCS5D01G178400 chr7D 85.714 91 13 0 7692 7782 227169125 227169215 7.520000e-16 97.1
41 TraesCS5D01G178400 chr6D 97.895 95 0 2 1969 2061 414526169 414526263 7.310000e-36 163.0
42 TraesCS5D01G178400 chr6D 98.889 90 0 1 1968 2056 29740992 29741081 9.460000e-35 159.0
43 TraesCS5D01G178400 chr6D 100.000 85 0 0 1972 2056 101445600 101445684 3.400000e-34 158.0
44 TraesCS5D01G178400 chr6D 100.000 85 0 0 1972 2056 142577112 142577028 3.400000e-34 158.0
45 TraesCS5D01G178400 chr6D 87.143 70 7 2 7692 7761 327006603 327006536 2.720000e-10 78.7
46 TraesCS5D01G178400 chr6D 90.164 61 2 4 7692 7748 427972629 427972689 9.800000e-10 76.8
47 TraesCS5D01G178400 chr6D 95.556 45 1 1 7711 7754 85656719 85656675 4.560000e-08 71.3
48 TraesCS5D01G178400 chr6D 90.385 52 5 0 7703 7754 25090771 25090720 1.640000e-07 69.4
49 TraesCS5D01G178400 chr6D 93.617 47 2 1 7712 7757 81770364 81770318 1.640000e-07 69.4
50 TraesCS5D01G178400 chr6D 87.931 58 7 0 7691 7748 107464410 107464467 1.640000e-07 69.4
51 TraesCS5D01G178400 chr6D 87.097 62 7 1 7697 7758 234467856 234467796 1.640000e-07 69.4
52 TraesCS5D01G178400 chr6D 93.617 47 2 1 7711 7756 370645625 370645671 1.640000e-07 69.4
53 TraesCS5D01G178400 chr6D 87.931 58 7 0 7697 7754 390974258 390974201 1.640000e-07 69.4
54 TraesCS5D01G178400 chr6D 90.385 52 5 0 7703 7754 413420043 413419992 1.640000e-07 69.4
55 TraesCS5D01G178400 chr6D 84.848 66 10 0 7689 7754 193682584 193682519 5.900000e-07 67.6
56 TraesCS5D01G178400 chr6D 83.333 78 8 4 7715 7792 405585496 405585568 5.900000e-07 67.6
57 TraesCS5D01G178400 chr6D 97.059 34 1 0 7747 7780 469578451 469578418 3.550000e-04 58.4
58 TraesCS5D01G178400 chr1A 100.000 85 0 0 1972 2056 338153245 338153329 3.400000e-34 158.0
59 TraesCS5D01G178400 chr1A 100.000 85 0 0 1972 2056 493138006 493137922 3.400000e-34 158.0
60 TraesCS5D01G178400 chr1A 87.143 70 6 2 7715 7781 436253377 436253446 9.800000e-10 76.8
61 TraesCS5D01G178400 chr1A 86.364 66 9 0 7689 7754 22295358 22295293 1.270000e-08 73.1
62 TraesCS5D01G178400 chr1A 97.222 36 1 0 7747 7782 537892412 537892447 2.740000e-05 62.1
63 TraesCS5D01G178400 chr7B 86.813 91 12 0 7692 7782 198935020 198935110 1.620000e-17 102.0
64 TraesCS5D01G178400 chr7B 88.372 86 4 4 7711 7794 622580749 622580830 2.090000e-16 99.0
65 TraesCS5D01G178400 chr1B 88.235 85 6 2 7711 7794 655433711 655433792 2.090000e-16 99.0
66 TraesCS5D01G178400 chrUn 85.897 78 6 2 7712 7784 41677594 41677517 2.720000e-10 78.7
67 TraesCS5D01G178400 chrUn 87.143 70 7 2 7692 7761 476757106 476757039 2.720000e-10 78.7
68 TraesCS5D01G178400 chrUn 97.727 44 1 0 9059 9102 18809031 18808988 9.800000e-10 76.8
69 TraesCS5D01G178400 chr7A 84.706 85 5 4 7711 7794 489229872 489229795 2.720000e-10 78.7
70 TraesCS5D01G178400 chr6A 87.143 70 7 2 7692 7761 465607791 465607724 2.720000e-10 78.7
71 TraesCS5D01G178400 chr3A 84.146 82 12 1 7677 7758 698516520 698516440 2.720000e-10 78.7
72 TraesCS5D01G178400 chr4B 92.308 52 4 0 7703 7754 265994330 265994279 3.520000e-09 75.0
73 TraesCS5D01G178400 chr4B 85.714 70 10 0 7688 7757 371292946 371292877 3.520000e-09 75.0
74 TraesCS5D01G178400 chr4B 87.302 63 4 3 7703 7765 207332538 207332480 1.640000e-07 69.4
75 TraesCS5D01G178400 chr4B 90.385 52 4 1 9049 9099 366946235 366946286 5.900000e-07 67.6
76 TraesCS5D01G178400 chr4A 95.455 44 2 0 9059 9102 591452558 591452601 4.560000e-08 71.3
77 TraesCS5D01G178400 chr4A 95.455 44 2 0 9059 9102 592264874 592264831 4.560000e-08 71.3
78 TraesCS5D01G178400 chr4A 95.455 44 2 0 9059 9102 592602292 592602249 4.560000e-08 71.3
79 TraesCS5D01G178400 chr4A 95.455 44 2 0 9059 9102 592891412 592891369 4.560000e-08 71.3
80 TraesCS5D01G178400 chr1D 95.455 44 2 0 9059 9102 468029976 468029933 4.560000e-08 71.3
81 TraesCS5D01G178400 chr1D 87.931 58 7 0 7691 7748 28425618 28425675 1.640000e-07 69.4
82 TraesCS5D01G178400 chr1D 90.909 44 4 0 9059 9102 46338352 46338309 9.870000e-05 60.2
83 TraesCS5D01G178400 chr1D 97.143 35 1 0 7747 7781 122550512 122550478 9.870000e-05 60.2
84 TraesCS5D01G178400 chr4D 86.667 60 8 0 7689 7748 149761069 149761128 5.900000e-07 67.6
85 TraesCS5D01G178400 chr4D 86.667 60 8 0 7689 7748 149794437 149794496 5.900000e-07 67.6
86 TraesCS5D01G178400 chr4D 86.667 60 8 0 7689 7748 149828554 149828613 5.900000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G178400 chr5D 277814415 277823516 9101 False 7935.500000 13754 100.000000 1 9102 2 chr5D.!!$F3 9101
1 TraesCS5D01G178400 chr5B 315921918 315929795 7877 False 2026.333333 8885 94.045167 3 8589 6 chr5B.!!$F3 8586
2 TraesCS5D01G178400 chr5A 367126221 367134557 8336 False 1418.888889 6231 93.456222 4 9102 9 chr5A.!!$F2 9098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.246757 CGAAAGATTTGGCGTCGTCG 60.247 55.000 0.00 0.00 40.37 5.12 F
1697 1710 0.039035 TGAATCGGGTCCTTTTGGGG 59.961 55.000 0.00 0.00 40.87 4.96 F
1989 2002 0.042131 ATACTCCCTCCGTCCCACAA 59.958 55.000 0.00 0.00 0.00 3.33 F
1990 2003 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71 F
1993 2006 0.252330 TCCCTCCGTCCCACAATGTA 60.252 55.000 0.00 0.00 0.00 2.29 F
2153 2166 0.321298 GTACACCACAATGCGGGAGT 60.321 55.000 0.00 0.00 0.00 3.85 F
2862 2883 2.708861 TGTTTGGGAGAGGTAAGCAAGA 59.291 45.455 0.00 0.00 0.00 3.02 F
4407 4430 1.668826 TATGCCTCCTGTCCCACTTT 58.331 50.000 0.00 0.00 0.00 2.66 F
5890 6012 0.392193 CTTCCACGATCTGCTTGGCT 60.392 55.000 0.00 0.00 35.93 4.75 F
6261 6472 0.100503 ACTTGCAGACCACAAAACGC 59.899 50.000 0.00 0.00 0.00 4.84 F
7993 8290 0.179037 TGGAGTATGCCATGCAGAGC 60.179 55.000 3.84 3.84 43.65 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 1987 0.252330 TACATTGTGGGACGGAGGGA 60.252 55.000 0.00 0.00 0.00 4.20 R
3069 3090 0.580104 GGGTCGTTCGTGACAAACAG 59.420 55.000 7.33 0.00 40.72 3.16 R
3547 3568 2.008242 ACTCTCACTCAACTGAGGCT 57.992 50.000 11.31 0.00 46.13 4.58 R
3561 3582 4.356289 GCTTACTGCAGCTAGTTACTCTC 58.644 47.826 15.27 0.00 42.31 3.20 R
3577 3598 5.239525 GTCCAATGTTCAAAGTCTGCTTACT 59.760 40.000 0.00 0.00 33.95 2.24 R
3940 3961 5.631119 AGGTAAACTGCAGAGGTTAACAAT 58.369 37.500 23.35 1.18 41.04 2.71 R
4578 4605 2.128507 GCCACCACGAAAACCCCAA 61.129 57.895 0.00 0.00 0.00 4.12 R
5892 6014 0.111253 AAGAACAGCAAGGAGGGTGG 59.889 55.000 0.00 0.00 40.47 4.61 R
7848 8139 0.759346 ATGCCGGGATTCAGGACTAC 59.241 55.000 0.92 0.00 0.00 2.73 R
8059 8356 1.130054 AAGCAGGGCTCTGGAAGTCA 61.130 55.000 17.16 0.00 38.25 3.41 R
8811 9152 0.874390 GTTTCACATCAAGAGCCGCA 59.126 50.000 0.00 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.220724 TGAGTGTGTACTGTTTAGGAGGT 58.779 43.478 0.00 0.00 37.25 3.85
28 29 3.064931 GTGTGTACTGTTTAGGAGGTGC 58.935 50.000 0.00 0.00 0.00 5.01
47 48 3.003378 GTGCACACCCTCAAGAGTAAAAC 59.997 47.826 13.17 0.00 0.00 2.43
62 63 8.808529 CAAGAGTAAAACATAAGACATAGTCGG 58.191 37.037 0.00 0.00 37.67 4.79
64 65 8.529476 AGAGTAAAACATAAGACATAGTCGGTT 58.471 33.333 0.00 0.00 37.67 4.44
65 66 9.793252 GAGTAAAACATAAGACATAGTCGGTTA 57.207 33.333 0.00 0.00 37.67 2.85
73 74 9.448294 CATAAGACATAGTCGGTTAGTAGAAAC 57.552 37.037 0.00 0.00 37.67 2.78
76 77 7.111466 AGACATAGTCGGTTAGTAGAAACTCT 58.889 38.462 0.00 0.00 37.67 3.24
93 94 4.213564 ACTCTGCAAAGGATCTTTCGAT 57.786 40.909 0.00 0.00 0.00 3.59
95 96 5.734720 ACTCTGCAAAGGATCTTTCGATAA 58.265 37.500 0.00 0.00 0.00 1.75
100 101 5.885352 TGCAAAGGATCTTTCGATAATGGAA 59.115 36.000 0.00 0.00 0.00 3.53
132 133 2.093921 GTGTTGGTCCTCTAGCTCCTTC 60.094 54.545 0.00 0.00 0.00 3.46
156 157 1.265905 GACCAACGAAAGATTTGGCGT 59.734 47.619 0.16 0.00 45.44 5.68
161 162 0.246757 CGAAAGATTTGGCGTCGTCG 60.247 55.000 0.00 0.00 40.37 5.12
189 190 1.272816 TGTGAGGTTATGTCTCCCCGA 60.273 52.381 0.00 0.00 0.00 5.14
193 194 2.037381 GAGGTTATGTCTCCCCGAATCC 59.963 54.545 0.00 0.00 0.00 3.01
207 208 0.541863 GAATCCATGGTGGTCGTCCT 59.458 55.000 12.58 0.00 39.03 3.85
230 231 3.263425 ACCCTTTTCATCGCCTTCTTCTA 59.737 43.478 0.00 0.00 0.00 2.10
244 245 2.673258 TCTTCTATGGACGGTGGCATA 58.327 47.619 0.00 0.00 0.00 3.14
254 255 3.391049 GACGGTGGCATATTTCCTAGAC 58.609 50.000 0.00 0.00 0.00 2.59
262 263 4.439057 GCATATTTCCTAGACCGTTGTCA 58.561 43.478 0.00 0.00 44.33 3.58
275 276 1.986378 CGTTGTCACCGACATCTTCTC 59.014 52.381 0.00 0.00 42.40 2.87
281 282 0.965866 ACCGACATCTTCTCGCTCCA 60.966 55.000 0.00 0.00 0.00 3.86
344 345 0.666374 GTCTCCAACGGTGTTTTGGG 59.334 55.000 0.00 0.00 43.38 4.12
345 346 0.256464 TCTCCAACGGTGTTTTGGGT 59.744 50.000 0.00 0.00 43.38 4.51
379 380 1.295792 TCAACTTTGCTCACGACACC 58.704 50.000 0.00 0.00 0.00 4.16
384 385 2.363711 TTTGCTCACGACACCTCGCT 62.364 55.000 0.00 0.00 44.33 4.93
418 419 2.884639 AGGAAGGTGGTGTTGATTTTCG 59.115 45.455 0.00 0.00 0.00 3.46
419 420 2.621526 GGAAGGTGGTGTTGATTTTCGT 59.378 45.455 0.00 0.00 0.00 3.85
420 421 3.550030 GGAAGGTGGTGTTGATTTTCGTG 60.550 47.826 0.00 0.00 0.00 4.35
446 447 5.815740 AGACCAGTGTGTAACTTAGTTGTTG 59.184 40.000 8.00 0.00 36.83 3.33
447 448 5.493809 ACCAGTGTGTAACTTAGTTGTTGT 58.506 37.500 8.00 0.00 36.83 3.32
449 450 6.431852 ACCAGTGTGTAACTTAGTTGTTGTTT 59.568 34.615 8.00 0.00 36.83 2.83
484 494 8.788325 AAAATATTACGTTAGTCAGAAAGCCT 57.212 30.769 0.00 0.00 0.00 4.58
506 516 7.499232 AGCCTGCGAAGACATAATTAAGTAAAT 59.501 33.333 0.00 0.00 0.00 1.40
544 556 0.954452 AAAGAGTTTTGGGCAGCGAG 59.046 50.000 0.00 0.00 0.00 5.03
562 574 3.064207 CGAGAACCCGAAAAAGTCATGA 58.936 45.455 0.00 0.00 0.00 3.07
574 586 8.082242 CCGAAAAAGTCATGAAACCTAAGATTT 58.918 33.333 0.00 0.00 0.00 2.17
599 611 4.156477 CAAGGTTCCCATAAGTTTTCCCA 58.844 43.478 0.00 0.00 0.00 4.37
600 612 4.692523 AGGTTCCCATAAGTTTTCCCAT 57.307 40.909 0.00 0.00 0.00 4.00
601 613 5.806955 AGGTTCCCATAAGTTTTCCCATA 57.193 39.130 0.00 0.00 0.00 2.74
630 642 8.601845 ATTGAACTTAAGGTTTGTATTTTGCC 57.398 30.769 7.53 0.00 38.41 4.52
660 672 6.854091 AAAAATACTACTCTCTCCGTTCCT 57.146 37.500 0.00 0.00 0.00 3.36
661 673 7.951347 AAAAATACTACTCTCTCCGTTCCTA 57.049 36.000 0.00 0.00 0.00 2.94
662 674 7.951347 AAAATACTACTCTCTCCGTTCCTAA 57.049 36.000 0.00 0.00 0.00 2.69
663 675 7.951347 AAATACTACTCTCTCCGTTCCTAAA 57.049 36.000 0.00 0.00 0.00 1.85
664 676 8.536340 AAATACTACTCTCTCCGTTCCTAAAT 57.464 34.615 0.00 0.00 0.00 1.40
665 677 9.638176 AAATACTACTCTCTCCGTTCCTAAATA 57.362 33.333 0.00 0.00 0.00 1.40
666 678 9.810870 AATACTACTCTCTCCGTTCCTAAATAT 57.189 33.333 0.00 0.00 0.00 1.28
667 679 9.810870 ATACTACTCTCTCCGTTCCTAAATATT 57.189 33.333 0.00 0.00 0.00 1.28
668 680 8.536340 ACTACTCTCTCCGTTCCTAAATATTT 57.464 34.615 5.89 5.89 0.00 1.40
669 681 8.414778 ACTACTCTCTCCGTTCCTAAATATTTG 58.585 37.037 11.05 1.40 0.00 2.32
670 682 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
671 683 7.266400 ACTCTCTCCGTTCCTAAATATTTGTC 58.734 38.462 11.05 0.00 0.00 3.18
672 684 7.124448 ACTCTCTCCGTTCCTAAATATTTGTCT 59.876 37.037 11.05 0.00 0.00 3.41
673 685 7.848128 TCTCTCCGTTCCTAAATATTTGTCTT 58.152 34.615 11.05 0.00 0.00 3.01
674 686 8.319146 TCTCTCCGTTCCTAAATATTTGTCTTT 58.681 33.333 11.05 0.00 0.00 2.52
675 687 8.857694 TCTCCGTTCCTAAATATTTGTCTTTT 57.142 30.769 11.05 0.00 0.00 2.27
676 688 9.292195 TCTCCGTTCCTAAATATTTGTCTTTTT 57.708 29.630 11.05 0.00 0.00 1.94
693 705 9.787532 TTGTCTTTTTAGAGATTTCAACAAGTG 57.212 29.630 0.00 0.00 0.00 3.16
694 706 9.173021 TGTCTTTTTAGAGATTTCAACAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
695 707 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
696 708 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
703 715 9.737427 AGAGATTTCAACAAGTGACTATATACG 57.263 33.333 0.00 0.00 35.39 3.06
704 716 8.873215 AGATTTCAACAAGTGACTATATACGG 57.127 34.615 0.00 0.00 35.39 4.02
705 717 8.692710 AGATTTCAACAAGTGACTATATACGGA 58.307 33.333 0.00 0.00 35.39 4.69
706 718 8.873215 ATTTCAACAAGTGACTATATACGGAG 57.127 34.615 0.00 0.00 35.39 4.63
707 719 5.828747 TCAACAAGTGACTATATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
708 720 5.358725 TCAACAAGTGACTATATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
709 721 5.847111 ACAAGTGACTATATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
710 722 6.216801 ACAAGTGACTATATACGGAGCAAA 57.783 37.500 0.00 0.00 0.00 3.68
711 723 6.636705 ACAAGTGACTATATACGGAGCAAAA 58.363 36.000 0.00 0.00 0.00 2.44
712 724 7.272978 ACAAGTGACTATATACGGAGCAAAAT 58.727 34.615 0.00 0.00 0.00 1.82
713 725 7.224753 ACAAGTGACTATATACGGAGCAAAATG 59.775 37.037 0.00 0.00 0.00 2.32
714 726 7.050970 AGTGACTATATACGGAGCAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
715 727 7.148641 AGTGACTATATACGGAGCAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
716 728 6.924060 GTGACTATATACGGAGCAAAATGAGT 59.076 38.462 0.00 0.00 0.00 3.41
717 729 6.923508 TGACTATATACGGAGCAAAATGAGTG 59.076 38.462 0.00 0.00 0.00 3.51
718 730 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
719 731 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
720 732 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
721 733 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
722 734 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
723 735 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
724 736 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
725 737 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
726 738 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
764 776 5.437289 CATACATCCGTATGTGGCAATTT 57.563 39.130 3.56 0.00 46.70 1.82
765 777 6.552859 CATACATCCGTATGTGGCAATTTA 57.447 37.500 3.56 0.00 46.70 1.40
766 778 7.144722 CATACATCCGTATGTGGCAATTTAT 57.855 36.000 3.56 0.00 46.70 1.40
767 779 7.592938 CATACATCCGTATGTGGCAATTTATT 58.407 34.615 3.56 0.00 46.70 1.40
768 780 6.463995 ACATCCGTATGTGGCAATTTATTT 57.536 33.333 0.00 0.00 44.79 1.40
769 781 6.272318 ACATCCGTATGTGGCAATTTATTTG 58.728 36.000 0.00 0.00 44.79 2.32
770 782 6.096141 ACATCCGTATGTGGCAATTTATTTGA 59.904 34.615 0.00 0.00 44.79 2.69
771 783 6.516739 TCCGTATGTGGCAATTTATTTGAA 57.483 33.333 0.00 0.00 37.53 2.69
772 784 6.925211 TCCGTATGTGGCAATTTATTTGAAA 58.075 32.000 0.00 0.00 37.53 2.69
773 785 7.551585 TCCGTATGTGGCAATTTATTTGAAAT 58.448 30.769 0.00 0.00 37.53 2.17
774 786 8.687242 TCCGTATGTGGCAATTTATTTGAAATA 58.313 29.630 0.00 0.00 37.53 1.40
775 787 9.474920 CCGTATGTGGCAATTTATTTGAAATAT 57.525 29.630 0.00 0.00 37.53 1.28
804 816 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
805 817 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
813 825 4.591321 TTAGGAACGGAGGGAGTACTAA 57.409 45.455 0.00 0.00 0.00 2.24
842 854 7.334421 TGCTCAACTTTGTACTGAGATTTATCC 59.666 37.037 12.01 0.00 39.15 2.59
844 856 6.816640 TCAACTTTGTACTGAGATTTATCCGG 59.183 38.462 0.00 0.00 0.00 5.14
895 907 2.742053 TCGACTTACTTTCATTGCCAGC 59.258 45.455 0.00 0.00 0.00 4.85
1697 1710 0.039035 TGAATCGGGTCCTTTTGGGG 59.961 55.000 0.00 0.00 40.87 4.96
1698 1711 0.683179 GAATCGGGTCCTTTTGGGGG 60.683 60.000 0.00 0.00 40.87 5.40
1776 1789 4.504097 GGTTTTGACAATGTGAGCTTGTTC 59.496 41.667 0.00 0.00 36.98 3.18
1785 1798 1.599542 GTGAGCTTGTTCAACTCGCTT 59.400 47.619 5.75 0.00 37.82 4.68
1802 1815 3.942748 TCGCTTTTTGTGTTTACTCTGGT 59.057 39.130 0.00 0.00 0.00 4.00
1824 1837 1.741770 GTGGTCGACATCACTGCCC 60.742 63.158 18.91 0.00 0.00 5.36
1826 1839 1.448540 GGTCGACATCACTGCCCTG 60.449 63.158 18.91 0.00 0.00 4.45
1841 1854 2.435805 TGCCCTGTGAAGCTTAGATAGG 59.564 50.000 0.00 6.36 0.00 2.57
1849 1862 3.711190 TGAAGCTTAGATAGGTGCCATGA 59.289 43.478 0.00 0.00 34.09 3.07
1976 1989 9.950496 AATGATGGATGAACAGTAATATACTCC 57.050 33.333 0.00 0.00 36.76 3.85
1977 1990 7.907389 TGATGGATGAACAGTAATATACTCCC 58.093 38.462 0.00 0.00 36.76 4.30
1978 1991 7.734865 TGATGGATGAACAGTAATATACTCCCT 59.265 37.037 0.00 0.00 36.76 4.20
1979 1992 7.540474 TGGATGAACAGTAATATACTCCCTC 57.460 40.000 0.00 0.00 36.76 4.30
1980 1993 6.497259 TGGATGAACAGTAATATACTCCCTCC 59.503 42.308 0.00 0.00 36.76 4.30
1981 1994 6.350277 GGATGAACAGTAATATACTCCCTCCG 60.350 46.154 0.00 0.00 36.76 4.63
1982 1995 5.452255 TGAACAGTAATATACTCCCTCCGT 58.548 41.667 0.00 0.00 36.76 4.69
1983 1996 5.533903 TGAACAGTAATATACTCCCTCCGTC 59.466 44.000 0.00 0.00 36.76 4.79
1984 1997 4.405548 ACAGTAATATACTCCCTCCGTCC 58.594 47.826 0.00 0.00 36.76 4.79
1985 1998 3.762823 CAGTAATATACTCCCTCCGTCCC 59.237 52.174 0.00 0.00 36.76 4.46
1986 1999 3.400322 AGTAATATACTCCCTCCGTCCCA 59.600 47.826 0.00 0.00 32.47 4.37
1987 2000 2.305858 ATATACTCCCTCCGTCCCAC 57.694 55.000 0.00 0.00 0.00 4.61
1988 2001 0.928505 TATACTCCCTCCGTCCCACA 59.071 55.000 0.00 0.00 0.00 4.17
1989 2002 0.042131 ATACTCCCTCCGTCCCACAA 59.958 55.000 0.00 0.00 0.00 3.33
1990 2003 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
1991 2004 1.221840 CTCCCTCCGTCCCACAATG 59.778 63.158 0.00 0.00 0.00 2.82
1992 2005 1.537889 TCCCTCCGTCCCACAATGT 60.538 57.895 0.00 0.00 0.00 2.71
1993 2006 0.252330 TCCCTCCGTCCCACAATGTA 60.252 55.000 0.00 0.00 0.00 2.29
1994 2007 0.616371 CCCTCCGTCCCACAATGTAA 59.384 55.000 0.00 0.00 0.00 2.41
1995 2008 1.406887 CCCTCCGTCCCACAATGTAAG 60.407 57.143 0.00 0.00 0.00 2.34
1996 2009 1.553248 CCTCCGTCCCACAATGTAAGA 59.447 52.381 0.00 0.00 0.00 2.10
1997 2010 2.618053 CTCCGTCCCACAATGTAAGAC 58.382 52.381 5.24 5.24 0.00 3.01
1999 2012 1.337447 CCGTCCCACAATGTAAGACGT 60.337 52.381 25.28 0.00 46.62 4.34
2000 2013 2.409975 CGTCCCACAATGTAAGACGTT 58.590 47.619 21.67 0.00 43.89 3.99
2001 2014 2.803956 CGTCCCACAATGTAAGACGTTT 59.196 45.455 21.67 0.00 43.89 3.60
2002 2015 3.249080 CGTCCCACAATGTAAGACGTTTT 59.751 43.478 21.67 0.00 43.89 2.43
2003 2016 4.260866 CGTCCCACAATGTAAGACGTTTTT 60.261 41.667 21.67 0.00 43.89 1.94
2004 2017 4.973663 GTCCCACAATGTAAGACGTTTTTG 59.026 41.667 0.00 0.00 0.00 2.44
2005 2018 3.733727 CCCACAATGTAAGACGTTTTTGC 59.266 43.478 0.00 0.00 0.00 3.68
2006 2019 4.355437 CCACAATGTAAGACGTTTTTGCA 58.645 39.130 0.00 1.87 0.00 4.08
2007 2020 4.800993 CCACAATGTAAGACGTTTTTGCAA 59.199 37.500 0.00 0.00 0.00 4.08
2008 2021 5.051774 CCACAATGTAAGACGTTTTTGCAAG 60.052 40.000 0.00 2.28 0.00 4.01
2009 2022 4.502645 ACAATGTAAGACGTTTTTGCAAGC 59.497 37.500 0.00 0.00 0.00 4.01
2010 2023 4.568152 ATGTAAGACGTTTTTGCAAGCT 57.432 36.364 0.00 0.00 0.00 3.74
2011 2024 5.682943 ATGTAAGACGTTTTTGCAAGCTA 57.317 34.783 0.00 0.00 0.00 3.32
2012 2025 5.090652 TGTAAGACGTTTTTGCAAGCTAG 57.909 39.130 0.00 0.00 0.00 3.42
2013 2026 4.573201 TGTAAGACGTTTTTGCAAGCTAGT 59.427 37.500 0.00 0.00 0.00 2.57
2014 2027 4.632538 AAGACGTTTTTGCAAGCTAGTT 57.367 36.364 0.00 0.00 0.00 2.24
2015 2028 4.632538 AGACGTTTTTGCAAGCTAGTTT 57.367 36.364 0.00 0.00 0.00 2.66
2016 2029 5.744666 AGACGTTTTTGCAAGCTAGTTTA 57.255 34.783 0.00 0.00 0.00 2.01
2017 2030 5.748592 AGACGTTTTTGCAAGCTAGTTTAG 58.251 37.500 0.00 0.00 0.00 1.85
2035 2048 9.846248 CTAGTTTAGCTTGCAAAAACATCTTAT 57.154 29.630 21.30 7.46 35.93 1.73
2042 2055 9.754382 AGCTTGCAAAAACATCTTATATTATGG 57.246 29.630 0.00 0.00 0.00 2.74
2043 2056 8.981647 GCTTGCAAAAACATCTTATATTATGGG 58.018 33.333 0.00 0.00 0.00 4.00
2065 2078 4.563786 GGACAGAGGGAGTAGTTTTGAAGG 60.564 50.000 0.00 0.00 0.00 3.46
2153 2166 0.321298 GTACACCACAATGCGGGAGT 60.321 55.000 0.00 0.00 0.00 3.85
2248 2261 8.284945 TGCTCTTCAACAGCATTTCTATTATT 57.715 30.769 0.00 0.00 42.09 1.40
2366 2379 7.285629 ACAATGATAGGACTAGTTGATCGAGAA 59.714 37.037 0.00 0.00 0.00 2.87
2540 2559 5.195940 ACACCCATTTATCTGTCTGGATTG 58.804 41.667 0.00 0.00 0.00 2.67
2793 2814 9.645059 TCTTGTGAACAATTTGAATGTTTTGTA 57.355 25.926 2.79 0.00 40.90 2.41
2862 2883 2.708861 TGTTTGGGAGAGGTAAGCAAGA 59.291 45.455 0.00 0.00 0.00 3.02
3069 3090 8.161699 TCACACAATTAAGTAGGAAACCTTTC 57.838 34.615 0.00 0.00 34.61 2.62
3101 3122 4.159879 ACGAACGACCCTCTCATAAGAATT 59.840 41.667 0.14 0.00 0.00 2.17
3117 3138 9.466497 TCATAAGAATTTATAGCATCCATTCCC 57.534 33.333 0.00 0.00 0.00 3.97
3143 3164 6.684897 TGAAAGAAACAATGGGATCCAAAT 57.315 33.333 15.23 3.49 36.95 2.32
3436 3457 6.051179 AGGGTTGTCCTATTTTCTCACTAC 57.949 41.667 0.00 0.00 45.98 2.73
3561 3582 4.153117 GTGACATTTAGCCTCAGTTGAGTG 59.847 45.833 8.23 1.86 40.48 3.51
3577 3598 3.421844 TGAGTGAGAGTAACTAGCTGCA 58.578 45.455 1.02 0.00 0.00 4.41
3876 3897 9.698309 GATATTCATAAGTAAGTGCTGCTTCTA 57.302 33.333 0.00 0.00 38.57 2.10
3973 3994 6.758886 CCTCTGCAGTTTACCTTGACTAATAG 59.241 42.308 14.67 0.00 0.00 1.73
4303 4324 3.909430 TGGTACTTCGTGTTCTGCTAAG 58.091 45.455 0.00 0.00 0.00 2.18
4310 4331 9.298774 GTACTTCGTGTTCTGCTAAGTTAATAT 57.701 33.333 0.00 0.00 32.85 1.28
4407 4430 1.668826 TATGCCTCCTGTCCCACTTT 58.331 50.000 0.00 0.00 0.00 2.66
4578 4605 3.743521 AGTTGTGTGATATGCAGTGTGT 58.256 40.909 0.00 0.00 0.00 3.72
4725 4753 8.507524 AGATTTGGAGTAACAATACCTTTAGC 57.492 34.615 0.00 0.00 32.08 3.09
4946 4977 3.172339 CAATTTGACAGGGGAAATGGGA 58.828 45.455 0.00 0.00 0.00 4.37
5048 5079 2.814805 AGTTTGATGATCCCAGTGGG 57.185 50.000 23.57 23.57 46.11 4.61
5392 5423 4.414852 CATTTATTGTTGAAGCCGGAGTG 58.585 43.478 5.05 0.00 0.00 3.51
5425 5456 7.381408 GGTGGAAAAGATGTTAAACAAGTAAGC 59.619 37.037 0.00 0.00 0.00 3.09
5433 5465 8.466798 AGATGTTAAACAAGTAAGCAACTGTTT 58.533 29.630 16.25 16.25 39.98 2.83
5434 5466 7.804614 TGTTAAACAAGTAAGCAACTGTTTG 57.195 32.000 18.69 8.09 38.61 2.93
5438 5470 7.722795 AAACAAGTAAGCAACTGTTTGTTTT 57.277 28.000 10.01 0.00 40.97 2.43
5439 5471 6.704512 ACAAGTAAGCAACTGTTTGTTTTG 57.295 33.333 0.00 0.00 38.88 2.44
5440 5472 6.220201 ACAAGTAAGCAACTGTTTGTTTTGT 58.780 32.000 0.00 0.00 38.88 2.83
5441 5473 7.371936 ACAAGTAAGCAACTGTTTGTTTTGTA 58.628 30.769 0.00 0.00 38.88 2.41
5442 5474 7.327518 ACAAGTAAGCAACTGTTTGTTTTGTAC 59.672 33.333 0.00 0.00 38.88 2.90
5481 5513 9.442047 AGTATTTCCTGTCTTTGTCATCTTAAG 57.558 33.333 0.00 0.00 0.00 1.85
5544 5576 2.158943 GGTCTGGATAAAGGAGGAACCG 60.159 54.545 0.00 0.00 44.74 4.44
5634 5666 2.368875 TCCTTTTGAAGAGAGAAGCCGT 59.631 45.455 0.00 0.00 0.00 5.68
5664 5696 1.262417 TTGTGATGTAGTCGGCTCCA 58.738 50.000 0.00 0.00 0.00 3.86
5678 5710 2.225019 CGGCTCCAATAAGATGACATGC 59.775 50.000 0.00 0.00 0.00 4.06
5700 5732 9.294030 CATGCTTTTGGAAATTTACTATCACTC 57.706 33.333 1.27 0.00 0.00 3.51
5729 5761 7.233757 AGTTAGTGATCTAGGTGGATTGGATAC 59.766 40.741 0.00 0.00 0.00 2.24
5824 5946 4.404073 GTGCCCTATCCCAGTCTATATCTG 59.596 50.000 0.00 0.00 0.00 2.90
5825 5947 4.045974 TGCCCTATCCCAGTCTATATCTGT 59.954 45.833 4.96 0.00 0.00 3.41
5826 5948 5.255443 TGCCCTATCCCAGTCTATATCTGTA 59.745 44.000 4.96 0.00 0.00 2.74
5827 5949 6.068200 TGCCCTATCCCAGTCTATATCTGTAT 60.068 42.308 4.96 2.20 0.00 2.29
5828 5950 7.130442 TGCCCTATCCCAGTCTATATCTGTATA 59.870 40.741 4.96 2.95 0.00 1.47
5829 5951 7.449086 GCCCTATCCCAGTCTATATCTGTATAC 59.551 44.444 0.00 0.00 0.00 1.47
5830 5952 7.945664 CCCTATCCCAGTCTATATCTGTATACC 59.054 44.444 0.00 0.00 0.00 2.73
5831 5953 8.729047 CCTATCCCAGTCTATATCTGTATACCT 58.271 40.741 0.00 0.00 0.00 3.08
5832 5954 9.787435 CTATCCCAGTCTATATCTGTATACCTC 57.213 40.741 0.00 0.00 0.00 3.85
5833 5955 7.832473 TCCCAGTCTATATCTGTATACCTCT 57.168 40.000 0.00 0.00 0.00 3.69
5834 5956 8.233349 TCCCAGTCTATATCTGTATACCTCTT 57.767 38.462 0.00 0.00 0.00 2.85
5835 5957 8.330247 TCCCAGTCTATATCTGTATACCTCTTC 58.670 40.741 0.00 0.00 0.00 2.87
5836 5958 8.110271 CCCAGTCTATATCTGTATACCTCTTCA 58.890 40.741 0.00 0.00 0.00 3.02
5837 5959 8.952278 CCAGTCTATATCTGTATACCTCTTCAC 58.048 40.741 0.00 0.00 0.00 3.18
5838 5960 9.733556 CAGTCTATATCTGTATACCTCTTCACT 57.266 37.037 0.00 0.00 0.00 3.41
5839 5961 9.733556 AGTCTATATCTGTATACCTCTTCACTG 57.266 37.037 0.00 0.00 0.00 3.66
5840 5962 9.509956 GTCTATATCTGTATACCTCTTCACTGT 57.490 37.037 0.00 0.00 0.00 3.55
5844 5966 9.815306 ATATCTGTATACCTCTTCACTGTATGT 57.185 33.333 0.00 0.00 0.00 2.29
5845 5967 7.569639 TCTGTATACCTCTTCACTGTATGTC 57.430 40.000 0.00 0.00 0.00 3.06
5846 5968 7.347252 TCTGTATACCTCTTCACTGTATGTCT 58.653 38.462 0.00 0.00 0.00 3.41
5847 5969 8.491958 TCTGTATACCTCTTCACTGTATGTCTA 58.508 37.037 0.00 0.00 0.00 2.59
5848 5970 8.447924 TGTATACCTCTTCACTGTATGTCTAC 57.552 38.462 0.00 0.00 0.00 2.59
5849 5971 6.963083 ATACCTCTTCACTGTATGTCTACC 57.037 41.667 0.00 0.00 0.00 3.18
5850 5972 4.024670 ACCTCTTCACTGTATGTCTACCC 58.975 47.826 0.00 0.00 0.00 3.69
5851 5973 3.385111 CCTCTTCACTGTATGTCTACCCC 59.615 52.174 0.00 0.00 0.00 4.95
5852 5974 4.023980 CTCTTCACTGTATGTCTACCCCA 58.976 47.826 0.00 0.00 0.00 4.96
5853 5975 3.767673 TCTTCACTGTATGTCTACCCCAC 59.232 47.826 0.00 0.00 0.00 4.61
5854 5976 3.468071 TCACTGTATGTCTACCCCACT 57.532 47.619 0.00 0.00 0.00 4.00
5855 5977 3.096852 TCACTGTATGTCTACCCCACTG 58.903 50.000 0.00 0.00 0.00 3.66
5856 5978 2.168521 CACTGTATGTCTACCCCACTGG 59.831 54.545 0.00 0.00 41.37 4.00
5867 5989 2.591915 CCCACTGGGTCACGTATCT 58.408 57.895 5.85 0.00 38.25 1.98
5868 5990 1.771565 CCCACTGGGTCACGTATCTA 58.228 55.000 5.85 0.00 38.25 1.98
5869 5991 2.317040 CCCACTGGGTCACGTATCTAT 58.683 52.381 5.85 0.00 38.25 1.98
5870 5992 3.493334 CCCACTGGGTCACGTATCTATA 58.507 50.000 5.85 0.00 38.25 1.31
5871 5993 3.255149 CCCACTGGGTCACGTATCTATAC 59.745 52.174 5.85 0.00 38.25 1.47
5872 5994 4.142790 CCACTGGGTCACGTATCTATACT 58.857 47.826 0.00 0.00 0.00 2.12
5873 5995 4.583489 CCACTGGGTCACGTATCTATACTT 59.417 45.833 0.00 0.00 0.00 2.24
5874 5996 5.278364 CCACTGGGTCACGTATCTATACTTC 60.278 48.000 0.00 0.00 0.00 3.01
5875 5997 4.826183 ACTGGGTCACGTATCTATACTTCC 59.174 45.833 0.00 0.00 0.00 3.46
5876 5998 4.795469 TGGGTCACGTATCTATACTTCCA 58.205 43.478 0.00 0.00 0.00 3.53
5877 5999 4.581824 TGGGTCACGTATCTATACTTCCAC 59.418 45.833 0.00 0.00 0.00 4.02
5878 6000 4.320057 GGGTCACGTATCTATACTTCCACG 60.320 50.000 0.00 0.00 35.62 4.94
5879 6001 4.512944 GGTCACGTATCTATACTTCCACGA 59.487 45.833 0.00 0.00 33.81 4.35
5880 6002 5.180868 GGTCACGTATCTATACTTCCACGAT 59.819 44.000 0.00 0.00 33.81 3.73
5881 6003 6.305639 GTCACGTATCTATACTTCCACGATC 58.694 44.000 0.00 0.00 33.81 3.69
5882 6004 6.147492 GTCACGTATCTATACTTCCACGATCT 59.853 42.308 0.00 0.00 33.81 2.75
5883 6005 6.147328 TCACGTATCTATACTTCCACGATCTG 59.853 42.308 0.00 0.00 33.81 2.90
5884 6006 5.106634 ACGTATCTATACTTCCACGATCTGC 60.107 44.000 0.00 0.00 33.81 4.26
5885 6007 5.122554 CGTATCTATACTTCCACGATCTGCT 59.877 44.000 0.00 0.00 0.00 4.24
5886 6008 6.348622 CGTATCTATACTTCCACGATCTGCTT 60.349 42.308 0.00 0.00 0.00 3.91
5887 6009 5.188327 TCTATACTTCCACGATCTGCTTG 57.812 43.478 0.00 0.00 0.00 4.01
5888 6010 2.672961 TACTTCCACGATCTGCTTGG 57.327 50.000 0.00 0.00 37.26 3.61
5889 6011 0.674895 ACTTCCACGATCTGCTTGGC 60.675 55.000 0.00 0.00 35.93 4.52
5890 6012 0.392193 CTTCCACGATCTGCTTGGCT 60.392 55.000 0.00 0.00 35.93 4.75
5891 6013 0.391661 TTCCACGATCTGCTTGGCTC 60.392 55.000 0.00 0.00 35.93 4.70
5892 6014 1.817099 CCACGATCTGCTTGGCTCC 60.817 63.158 0.00 0.00 0.00 4.70
5893 6015 1.817099 CACGATCTGCTTGGCTCCC 60.817 63.158 0.00 0.00 0.00 4.30
5894 6016 2.293318 ACGATCTGCTTGGCTCCCA 61.293 57.895 0.00 0.00 0.00 4.37
5895 6017 1.817099 CGATCTGCTTGGCTCCCAC 60.817 63.158 0.00 0.00 30.78 4.61
5896 6018 1.452833 GATCTGCTTGGCTCCCACC 60.453 63.158 0.00 0.00 30.78 4.61
5897 6019 2.900671 GATCTGCTTGGCTCCCACCC 62.901 65.000 0.00 0.00 30.78 4.61
5898 6020 3.655211 CTGCTTGGCTCCCACCCT 61.655 66.667 0.00 0.00 30.78 4.34
5899 6021 3.635268 CTGCTTGGCTCCCACCCTC 62.635 68.421 0.00 0.00 30.78 4.30
5900 6022 4.432741 GCTTGGCTCCCACCCTCC 62.433 72.222 0.00 0.00 30.78 4.30
5901 6023 2.612115 CTTGGCTCCCACCCTCCT 60.612 66.667 0.00 0.00 30.78 3.69
5902 6024 2.121506 TTGGCTCCCACCCTCCTT 60.122 61.111 0.00 0.00 30.78 3.36
5903 6025 2.490270 CTTGGCTCCCACCCTCCTTG 62.490 65.000 0.00 0.00 30.78 3.61
5904 6026 4.432741 GGCTCCCACCCTCCTTGC 62.433 72.222 0.00 0.00 0.00 4.01
5905 6027 3.334054 GCTCCCACCCTCCTTGCT 61.334 66.667 0.00 0.00 0.00 3.91
5906 6028 2.673523 CTCCCACCCTCCTTGCTG 59.326 66.667 0.00 0.00 0.00 4.41
5907 6029 2.121963 TCCCACCCTCCTTGCTGT 60.122 61.111 0.00 0.00 0.00 4.40
5908 6030 1.774217 TCCCACCCTCCTTGCTGTT 60.774 57.895 0.00 0.00 0.00 3.16
5909 6031 1.303643 CCCACCCTCCTTGCTGTTC 60.304 63.158 0.00 0.00 0.00 3.18
5910 6032 1.763770 CCACCCTCCTTGCTGTTCT 59.236 57.895 0.00 0.00 0.00 3.01
5960 6082 3.563697 CCCAGTCAAGTCTACACCCTCTA 60.564 52.174 0.00 0.00 0.00 2.43
5961 6083 4.087182 CCAGTCAAGTCTACACCCTCTAA 58.913 47.826 0.00 0.00 0.00 2.10
6005 6127 5.581874 CAGCATTGAACACCTTTGTTTTCTT 59.418 36.000 0.00 0.00 46.43 2.52
6010 6132 6.827586 TGAACACCTTTGTTTTCTTGTAGT 57.172 33.333 0.00 0.00 46.43 2.73
6023 6145 7.549842 TGTTTTCTTGTAGTTGCTTACAGTGTA 59.450 33.333 0.00 0.00 35.17 2.90
6036 6158 5.406780 GCTTACAGTGTATGATGGCAGATAC 59.593 44.000 17.86 10.93 0.00 2.24
6049 6171 4.002982 TGGCAGATACTGTGAATGTCAAC 58.997 43.478 0.00 0.00 33.43 3.18
6060 6265 8.846943 ACTGTGAATGTCAACATTGATAGTAA 57.153 30.769 18.14 0.00 44.81 2.24
6245 6456 5.806654 ACACCCTTATGAATTTGCAACTT 57.193 34.783 0.00 0.00 0.00 2.66
6261 6472 0.100503 ACTTGCAGACCACAAAACGC 59.899 50.000 0.00 0.00 0.00 4.84
6265 6476 1.719117 CAGACCACAAAACGCGTGT 59.281 52.632 14.98 3.14 32.26 4.49
6299 6519 3.766591 TGTGGCCCATGTGGTATTAAAAG 59.233 43.478 0.00 0.00 36.04 2.27
6304 6524 5.420739 GGCCCATGTGGTATTAAAAGAAAGA 59.579 40.000 0.00 0.00 36.04 2.52
6406 6633 8.885722 ACCTATTATTTGTGTTAATACCACACG 58.114 33.333 0.00 0.00 46.47 4.49
6673 6901 8.105829 ACTTCAGATGTTTGTCTCTTCCATTAT 58.894 33.333 0.00 0.00 0.00 1.28
6677 6905 8.954350 CAGATGTTTGTCTCTTCCATTATTCTT 58.046 33.333 0.00 0.00 0.00 2.52
6894 7122 9.183368 GTATGGTCATCTACTCATCTGATATCA 57.817 37.037 5.07 5.07 0.00 2.15
6935 7163 0.984230 AGCCCTTAAGCAGTGCTGTA 59.016 50.000 20.55 10.41 39.62 2.74
7013 7241 6.373759 AGGAAAAGGAACCTGAACAAGTAAT 58.626 36.000 0.00 0.00 34.99 1.89
7051 7279 7.728847 AGTTTTTATTGAATGTTCTTTGGGC 57.271 32.000 0.00 0.00 0.00 5.36
7075 7303 3.070878 TGTGGTGATGTCTAGTTTGAGCA 59.929 43.478 0.00 0.00 0.00 4.26
7271 7499 8.542132 CAATATTTGTGTGAAAGAACAGGTTTG 58.458 33.333 0.00 0.00 0.00 2.93
7272 7500 4.448537 TTGTGTGAAAGAACAGGTTTGG 57.551 40.909 0.00 0.00 0.00 3.28
7273 7501 2.757868 TGTGTGAAAGAACAGGTTTGGG 59.242 45.455 0.00 0.00 0.00 4.12
7274 7502 1.754226 TGTGAAAGAACAGGTTTGGGC 59.246 47.619 0.00 0.00 0.00 5.36
7275 7503 2.031870 GTGAAAGAACAGGTTTGGGCT 58.968 47.619 0.00 0.00 0.00 5.19
7585 7813 3.375299 GGCAAACCTAACACTCTAGCATG 59.625 47.826 0.00 0.00 0.00 4.06
7599 7827 7.230510 ACACTCTAGCATGAACATAAACCAAAA 59.769 33.333 0.00 0.00 0.00 2.44
7601 7829 7.448469 ACTCTAGCATGAACATAAACCAAAACT 59.552 33.333 0.00 0.00 0.00 2.66
7665 7921 2.094026 TGACTACACTGCTGCCACATAG 60.094 50.000 0.00 0.00 0.00 2.23
7701 7957 5.589050 GGTTCACACAAATCTATTACCTCCC 59.411 44.000 0.00 0.00 0.00 4.30
7707 7963 5.073691 CACAAATCTATTACCTCCCTCCCAT 59.926 44.000 0.00 0.00 0.00 4.00
7708 7964 5.676811 ACAAATCTATTACCTCCCTCCCATT 59.323 40.000 0.00 0.00 0.00 3.16
7771 8062 4.529377 ACCTAAGACAAGTAATTCGGGACA 59.471 41.667 0.00 0.00 0.00 4.02
7842 8133 1.410153 CTGCCTTTCTTGGTGCAAAGT 59.590 47.619 0.00 0.00 32.58 2.66
7843 8134 2.622942 CTGCCTTTCTTGGTGCAAAGTA 59.377 45.455 0.00 0.00 32.58 2.24
7848 8139 5.043248 CCTTTCTTGGTGCAAAGTAACTTG 58.957 41.667 0.00 0.00 0.00 3.16
7849 8140 5.394115 CCTTTCTTGGTGCAAAGTAACTTGT 60.394 40.000 0.00 0.00 0.00 3.16
7940 8237 2.214376 TTGATCTTGTTTGCCCCGAT 57.786 45.000 0.00 0.00 0.00 4.18
7942 8239 2.639065 TGATCTTGTTTGCCCCGATAC 58.361 47.619 0.00 0.00 0.00 2.24
7993 8290 0.179037 TGGAGTATGCCATGCAGAGC 60.179 55.000 3.84 3.84 43.65 4.09
8059 8356 5.130292 TCGAAGGATCTTACAAGTTCGTT 57.870 39.130 10.38 8.95 38.31 3.85
8106 8403 0.041238 AGGTTCATCCCGTGAGAGGA 59.959 55.000 0.00 0.00 38.29 3.71
8208 8505 6.058833 GTGTTTACATTTTCCCCCATTGTTT 58.941 36.000 0.00 0.00 0.00 2.83
8591 8932 1.135527 CAGTTGGCATGTTAGGGCATG 59.864 52.381 0.00 2.06 46.50 4.06
8595 8936 0.395586 GGCATGTTAGGGCATGTCCA 60.396 55.000 20.74 1.19 43.47 4.02
8597 8938 2.034124 GCATGTTAGGGCATGTCCAAT 58.966 47.619 20.74 0.21 45.75 3.16
8702 9043 4.451652 GCAAGCTGGCGTCGCTTC 62.452 66.667 18.11 6.50 45.27 3.86
8767 9108 0.106519 ACTGCTGCAACTGGAAACCT 60.107 50.000 3.02 0.00 0.00 3.50
8811 9152 1.605058 CCGACTCTTCCGATGGGTGT 61.605 60.000 0.00 0.00 33.83 4.16
8822 9163 2.803155 GATGGGTGTGCGGCTCTTGA 62.803 60.000 0.00 0.00 0.00 3.02
8939 9280 1.084370 GGTGCGATTGAAGGAGGACG 61.084 60.000 0.00 0.00 0.00 4.79
9039 9380 7.042797 AGTTTAGCAGCCACCATAATTAATG 57.957 36.000 0.00 0.00 35.15 1.90
9058 9399 9.595823 AATTAATGGAGCAATTTCTCTTGAATG 57.404 29.630 5.08 0.00 33.70 2.67
9072 9413 1.418334 TGAATGTGTTTGGTTGGGGG 58.582 50.000 0.00 0.00 0.00 5.40
9089 9430 2.631545 GGGGGTAATTAGAGCTAGCGAA 59.368 50.000 9.55 5.65 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.039973 TCCTAAACAGTACACACTCAAGGG 59.960 45.833 0.00 0.00 30.46 3.95
1 2 5.209818 TCCTAAACAGTACACACTCAAGG 57.790 43.478 0.00 0.00 30.46 3.61
8 9 2.701423 TGCACCTCCTAAACAGTACACA 59.299 45.455 0.00 0.00 0.00 3.72
26 27 3.211045 GTTTTACTCTTGAGGGTGTGCA 58.789 45.455 2.55 0.00 0.00 4.57
28 29 6.934645 TCTTATGTTTTACTCTTGAGGGTGTG 59.065 38.462 2.55 0.00 0.00 3.82
47 48 9.448294 GTTTCTACTAACCGACTATGTCTTATG 57.552 37.037 0.00 0.00 0.00 1.90
62 63 7.100409 AGATCCTTTGCAGAGTTTCTACTAAC 58.900 38.462 3.25 0.00 33.84 2.34
64 65 6.859112 AGATCCTTTGCAGAGTTTCTACTA 57.141 37.500 3.25 0.00 33.84 1.82
65 66 5.753721 AGATCCTTTGCAGAGTTTCTACT 57.246 39.130 3.25 0.00 37.31 2.57
93 94 0.036765 ACACGAAGCGGCTTCCATTA 60.037 50.000 30.91 0.00 37.20 1.90
95 96 2.034879 CACACGAAGCGGCTTCCAT 61.035 57.895 30.91 19.68 37.20 3.41
100 101 2.972505 CCAACACACGAAGCGGCT 60.973 61.111 0.00 0.00 0.00 5.52
156 157 1.663739 CTCACAAACTCCCCGACGA 59.336 57.895 0.00 0.00 0.00 4.20
161 162 3.009143 AGACATAACCTCACAAACTCCCC 59.991 47.826 0.00 0.00 0.00 4.81
167 168 2.027561 CGGGGAGACATAACCTCACAAA 60.028 50.000 0.00 0.00 35.82 2.83
189 190 1.485066 GTAGGACGACCACCATGGATT 59.515 52.381 21.47 0.71 40.96 3.01
193 194 0.976073 AGGGTAGGACGACCACCATG 60.976 60.000 20.32 0.00 41.73 3.66
207 208 3.263425 AGAAGAAGGCGATGAAAAGGGTA 59.737 43.478 0.00 0.00 0.00 3.69
230 231 1.494721 AGGAAATATGCCACCGTCCAT 59.505 47.619 0.00 0.00 0.00 3.41
244 245 2.353406 CGGTGACAACGGTCTAGGAAAT 60.353 50.000 4.57 0.00 44.61 2.17
254 255 1.068474 GAAGATGTCGGTGACAACGG 58.932 55.000 13.91 0.00 45.96 4.44
344 345 0.532573 TTGATGCCTCCTCTCGACAC 59.467 55.000 0.00 0.00 0.00 3.67
345 346 0.532573 GTTGATGCCTCCTCTCGACA 59.467 55.000 0.00 0.00 0.00 4.35
379 380 2.685388 TCCTTCTACACTCATCAGCGAG 59.315 50.000 0.00 0.00 39.05 5.03
384 385 3.515502 CCACCTTCCTTCTACACTCATCA 59.484 47.826 0.00 0.00 0.00 3.07
418 419 5.598769 ACTAAGTTACACACTGGTCTTCAC 58.401 41.667 0.00 0.00 35.12 3.18
419 420 5.864418 ACTAAGTTACACACTGGTCTTCA 57.136 39.130 0.00 0.00 35.12 3.02
420 421 6.047231 ACAACTAAGTTACACACTGGTCTTC 58.953 40.000 0.00 0.00 35.12 2.87
541 551 3.064207 TCATGACTTTTTCGGGTTCTCG 58.936 45.455 0.00 0.00 0.00 4.04
544 556 4.037565 AGGTTTCATGACTTTTTCGGGTTC 59.962 41.667 0.00 0.00 0.00 3.62
562 574 4.283467 GGAACCTTGCCAAATCTTAGGTTT 59.717 41.667 0.00 0.00 46.32 3.27
613 625 4.134933 AGGGGGCAAAATACAAACCTTA 57.865 40.909 0.00 0.00 0.00 2.69
649 661 8.494016 AAAGACAAATATTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
650 662 8.857694 AAAAGACAAATATTTAGGAACGGAGA 57.142 30.769 0.00 0.00 0.00 3.71
667 679 9.787532 CACTTGTTGAAATCTCTAAAAAGACAA 57.212 29.630 0.00 0.00 0.00 3.18
668 680 9.173021 TCACTTGTTGAAATCTCTAAAAAGACA 57.827 29.630 0.00 0.00 0.00 3.41
669 681 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
670 682 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
677 689 9.737427 CGTATATAGTCACTTGTTGAAATCTCT 57.263 33.333 0.00 0.00 35.39 3.10
678 690 8.969267 CCGTATATAGTCACTTGTTGAAATCTC 58.031 37.037 0.00 0.00 35.39 2.75
679 691 8.692710 TCCGTATATAGTCACTTGTTGAAATCT 58.307 33.333 0.00 0.00 35.39 2.40
680 692 8.867112 TCCGTATATAGTCACTTGTTGAAATC 57.133 34.615 0.00 0.00 35.39 2.17
681 693 7.438459 GCTCCGTATATAGTCACTTGTTGAAAT 59.562 37.037 0.00 0.00 35.39 2.17
682 694 6.755141 GCTCCGTATATAGTCACTTGTTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
683 695 6.127563 TGCTCCGTATATAGTCACTTGTTGAA 60.128 38.462 0.00 0.00 35.39 2.69
684 696 5.358725 TGCTCCGTATATAGTCACTTGTTGA 59.641 40.000 0.00 0.00 0.00 3.18
685 697 5.588240 TGCTCCGTATATAGTCACTTGTTG 58.412 41.667 0.00 0.00 0.00 3.33
686 698 5.847111 TGCTCCGTATATAGTCACTTGTT 57.153 39.130 0.00 0.00 0.00 2.83
687 699 5.847111 TTGCTCCGTATATAGTCACTTGT 57.153 39.130 0.00 0.00 0.00 3.16
688 700 7.438160 TCATTTTGCTCCGTATATAGTCACTTG 59.562 37.037 0.00 0.00 0.00 3.16
689 701 7.497595 TCATTTTGCTCCGTATATAGTCACTT 58.502 34.615 0.00 0.00 0.00 3.16
690 702 7.050970 TCATTTTGCTCCGTATATAGTCACT 57.949 36.000 0.00 0.00 0.00 3.41
691 703 6.924060 ACTCATTTTGCTCCGTATATAGTCAC 59.076 38.462 0.00 0.00 0.00 3.67
692 704 6.923508 CACTCATTTTGCTCCGTATATAGTCA 59.076 38.462 0.00 0.00 0.00 3.41
693 705 7.145985 TCACTCATTTTGCTCCGTATATAGTC 58.854 38.462 0.00 0.00 0.00 2.59
694 706 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
695 707 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
696 708 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
697 709 7.220030 AGATTCACTCATTTTGCTCCGTATAT 58.780 34.615 0.00 0.00 0.00 0.86
698 710 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
699 711 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
700 712 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
701 713 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
702 714 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
703 715 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
704 716 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
743 755 7.759489 AATAAATTGCCACATACGGATGTAT 57.241 32.000 14.23 0.00 44.82 2.29
744 756 7.283354 TCAAATAAATTGCCACATACGGATGTA 59.717 33.333 14.23 0.00 40.43 2.29
745 757 6.096141 TCAAATAAATTGCCACATACGGATGT 59.904 34.615 7.68 7.68 41.81 3.06
746 758 6.502652 TCAAATAAATTGCCACATACGGATG 58.497 36.000 5.94 5.94 38.98 3.51
747 759 6.707440 TCAAATAAATTGCCACATACGGAT 57.293 33.333 0.00 0.00 38.98 4.18
748 760 6.516739 TTCAAATAAATTGCCACATACGGA 57.483 33.333 0.00 0.00 38.98 4.69
749 761 7.769272 ATTTCAAATAAATTGCCACATACGG 57.231 32.000 0.00 0.00 38.98 4.02
778 790 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
779 791 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
780 792 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
781 793 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
782 794 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
783 795 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
784 796 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
785 797 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
786 798 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
787 799 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
788 800 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
789 801 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
790 802 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
791 803 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
792 804 4.591321 TTAGTACTCCCTCCGTTCCTAA 57.409 45.455 0.00 0.00 0.00 2.69
793 805 4.803329 ATTAGTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
794 806 3.684408 ATTAGTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
795 807 4.439968 CAAATTAGTACTCCCTCCGTTCC 58.560 47.826 0.00 0.00 0.00 3.62
796 808 3.869832 GCAAATTAGTACTCCCTCCGTTC 59.130 47.826 0.00 0.00 0.00 3.95
797 809 3.518303 AGCAAATTAGTACTCCCTCCGTT 59.482 43.478 0.00 0.00 0.00 4.44
798 810 3.105283 AGCAAATTAGTACTCCCTCCGT 58.895 45.455 0.00 0.00 0.00 4.69
799 811 3.132289 TGAGCAAATTAGTACTCCCTCCG 59.868 47.826 0.00 0.00 0.00 4.63
800 812 4.755266 TGAGCAAATTAGTACTCCCTCC 57.245 45.455 0.00 0.00 0.00 4.30
801 813 5.735766 AGTTGAGCAAATTAGTACTCCCTC 58.264 41.667 0.00 0.00 0.00 4.30
802 814 5.763876 AGTTGAGCAAATTAGTACTCCCT 57.236 39.130 0.00 0.00 0.00 4.20
803 815 6.206829 ACAAAGTTGAGCAAATTAGTACTCCC 59.793 38.462 0.00 0.00 0.00 4.30
804 816 7.203255 ACAAAGTTGAGCAAATTAGTACTCC 57.797 36.000 0.00 0.00 0.00 3.85
805 817 8.989980 AGTACAAAGTTGAGCAAATTAGTACTC 58.010 33.333 0.00 0.00 34.97 2.59
813 825 7.516198 AATCTCAGTACAAAGTTGAGCAAAT 57.484 32.000 4.58 0.00 38.52 2.32
842 854 2.513897 GGAAGAATGGACGGCCCG 60.514 66.667 3.83 0.00 37.93 6.13
844 856 2.408333 CATGGAAGAATGGACGGCC 58.592 57.895 0.00 0.00 0.00 6.13
895 907 0.883833 GTTCAACTGTGGGGATGCTG 59.116 55.000 0.00 0.00 0.00 4.41
905 917 1.134438 GGGAGGGGAGGTTCAACTGT 61.134 60.000 0.00 0.00 0.00 3.55
1035 1048 3.342377 GAAGGCTTCTTCTTAGTGCCT 57.658 47.619 19.83 0.00 46.30 4.75
1654 1667 3.056821 CCGATAGAACCGATGCAAGGATA 60.057 47.826 17.19 8.03 39.76 2.59
1655 1668 2.289072 CCGATAGAACCGATGCAAGGAT 60.289 50.000 17.19 6.34 39.76 3.24
1776 1789 5.452302 CAGAGTAAACACAAAAAGCGAGTTG 59.548 40.000 0.00 0.00 0.00 3.16
1785 1798 5.587043 CCACTACACCAGAGTAAACACAAAA 59.413 40.000 0.00 0.00 0.00 2.44
1802 1815 1.067846 GCAGTGATGTCGACCACTACA 60.068 52.381 21.96 9.35 41.26 2.74
1824 1837 3.118629 TGGCACCTATCTAAGCTTCACAG 60.119 47.826 0.00 0.00 0.00 3.66
1826 1839 3.543680 TGGCACCTATCTAAGCTTCAC 57.456 47.619 0.00 0.00 0.00 3.18
1830 1843 3.041211 TGTCATGGCACCTATCTAAGCT 58.959 45.455 0.00 0.00 0.00 3.74
1841 1854 3.197265 GGGCAAATAAATGTCATGGCAC 58.803 45.455 0.00 0.00 38.21 5.01
1849 1862 5.163311 GCTTAATCCAGGGGCAAATAAATGT 60.163 40.000 0.00 0.00 0.00 2.71
1973 1986 1.221840 CATTGTGGGACGGAGGGAG 59.778 63.158 0.00 0.00 0.00 4.30
1974 1987 0.252330 TACATTGTGGGACGGAGGGA 60.252 55.000 0.00 0.00 0.00 4.20
1975 1988 0.616371 TTACATTGTGGGACGGAGGG 59.384 55.000 0.00 0.00 0.00 4.30
1976 1989 1.553248 TCTTACATTGTGGGACGGAGG 59.447 52.381 0.00 0.00 0.00 4.30
1977 1990 2.618053 GTCTTACATTGTGGGACGGAG 58.382 52.381 0.00 0.00 0.00 4.63
1978 1991 1.067425 CGTCTTACATTGTGGGACGGA 60.067 52.381 24.96 5.37 43.69 4.69
1979 1992 1.355971 CGTCTTACATTGTGGGACGG 58.644 55.000 24.96 14.26 43.69 4.79
1981 1994 4.823790 AAAACGTCTTACATTGTGGGAC 57.176 40.909 0.00 6.72 0.00 4.46
1982 1995 4.498345 GCAAAAACGTCTTACATTGTGGGA 60.498 41.667 0.00 0.00 0.00 4.37
1983 1996 3.733727 GCAAAAACGTCTTACATTGTGGG 59.266 43.478 0.00 0.00 0.00 4.61
1984 1997 4.355437 TGCAAAAACGTCTTACATTGTGG 58.645 39.130 0.00 0.00 0.00 4.17
1985 1998 5.554324 GCTTGCAAAAACGTCTTACATTGTG 60.554 40.000 0.00 0.00 0.00 3.33
1986 1999 4.502645 GCTTGCAAAAACGTCTTACATTGT 59.497 37.500 0.00 0.00 0.00 2.71
1987 2000 4.739716 AGCTTGCAAAAACGTCTTACATTG 59.260 37.500 0.00 0.00 0.00 2.82
1988 2001 4.932146 AGCTTGCAAAAACGTCTTACATT 58.068 34.783 0.00 0.00 0.00 2.71
1989 2002 4.568152 AGCTTGCAAAAACGTCTTACAT 57.432 36.364 0.00 0.00 0.00 2.29
1990 2003 4.573201 ACTAGCTTGCAAAAACGTCTTACA 59.427 37.500 0.00 0.00 0.00 2.41
1991 2004 5.091910 ACTAGCTTGCAAAAACGTCTTAC 57.908 39.130 0.00 0.00 0.00 2.34
1992 2005 5.744666 AACTAGCTTGCAAAAACGTCTTA 57.255 34.783 0.00 0.00 0.00 2.10
1993 2006 4.632538 AACTAGCTTGCAAAAACGTCTT 57.367 36.364 0.00 0.00 0.00 3.01
1994 2007 4.632538 AAACTAGCTTGCAAAAACGTCT 57.367 36.364 0.00 0.00 0.00 4.18
2009 2022 9.846248 ATAAGATGTTTTTGCAAGCTAAACTAG 57.154 29.630 20.28 0.00 33.92 2.57
2016 2029 9.754382 CCATAATATAAGATGTTTTTGCAAGCT 57.246 29.630 0.00 0.00 0.00 3.74
2017 2030 8.981647 CCCATAATATAAGATGTTTTTGCAAGC 58.018 33.333 0.00 0.00 0.00 4.01
2020 2033 9.194972 TGTCCCATAATATAAGATGTTTTTGCA 57.805 29.630 0.00 0.00 0.00 4.08
2021 2034 9.683069 CTGTCCCATAATATAAGATGTTTTTGC 57.317 33.333 0.00 0.00 0.00 3.68
2024 2037 9.799106 CCTCTGTCCCATAATATAAGATGTTTT 57.201 33.333 0.00 0.00 0.00 2.43
2025 2038 8.386264 CCCTCTGTCCCATAATATAAGATGTTT 58.614 37.037 0.00 0.00 0.00 2.83
2026 2039 7.739444 TCCCTCTGTCCCATAATATAAGATGTT 59.261 37.037 0.00 0.00 0.00 2.71
2027 2040 7.256399 TCCCTCTGTCCCATAATATAAGATGT 58.744 38.462 0.00 0.00 0.00 3.06
2028 2041 7.401493 ACTCCCTCTGTCCCATAATATAAGATG 59.599 40.741 0.00 0.00 0.00 2.90
2029 2042 7.491681 ACTCCCTCTGTCCCATAATATAAGAT 58.508 38.462 0.00 0.00 0.00 2.40
2030 2043 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
2031 2044 7.896496 ACTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
2032 2045 7.776745 ACTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
2033 2046 7.358255 ACTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
2034 2047 6.234404 ACTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
2035 2048 5.681494 ACTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
2036 2049 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
2037 2050 4.348020 AACTACTCCCTCTGTCCCATAA 57.652 45.455 0.00 0.00 0.00 1.90
2038 2051 4.348020 AAACTACTCCCTCTGTCCCATA 57.652 45.455 0.00 0.00 0.00 2.74
2039 2052 2.950990 AACTACTCCCTCTGTCCCAT 57.049 50.000 0.00 0.00 0.00 4.00
2040 2053 2.637872 CAAAACTACTCCCTCTGTCCCA 59.362 50.000 0.00 0.00 0.00 4.37
2041 2054 2.904434 TCAAAACTACTCCCTCTGTCCC 59.096 50.000 0.00 0.00 0.00 4.46
2042 2055 4.563786 CCTTCAAAACTACTCCCTCTGTCC 60.564 50.000 0.00 0.00 0.00 4.02
2043 2056 4.040584 ACCTTCAAAACTACTCCCTCTGTC 59.959 45.833 0.00 0.00 0.00 3.51
2044 2057 3.974642 ACCTTCAAAACTACTCCCTCTGT 59.025 43.478 0.00 0.00 0.00 3.41
2045 2058 4.625607 ACCTTCAAAACTACTCCCTCTG 57.374 45.455 0.00 0.00 0.00 3.35
2046 2059 6.954352 ATTACCTTCAAAACTACTCCCTCT 57.046 37.500 0.00 0.00 0.00 3.69
2047 2060 7.883833 AGAAATTACCTTCAAAACTACTCCCTC 59.116 37.037 0.00 0.00 0.00 4.30
2048 2061 7.665974 CAGAAATTACCTTCAAAACTACTCCCT 59.334 37.037 0.00 0.00 0.00 4.20
2049 2062 7.447545 ACAGAAATTACCTTCAAAACTACTCCC 59.552 37.037 0.00 0.00 0.00 4.30
2050 2063 8.392372 ACAGAAATTACCTTCAAAACTACTCC 57.608 34.615 0.00 0.00 0.00 3.85
2054 2067 9.856162 ACCTAACAGAAATTACCTTCAAAACTA 57.144 29.630 0.00 0.00 0.00 2.24
2055 2068 8.630037 CACCTAACAGAAATTACCTTCAAAACT 58.370 33.333 0.00 0.00 0.00 2.66
2065 2078 6.554334 TTGCTGACACCTAACAGAAATTAC 57.446 37.500 0.00 0.00 36.38 1.89
2153 2166 6.093219 GCTGAATCAAGAGCATTCTCAACTAA 59.907 38.462 0.00 0.00 41.81 2.24
2248 2261 0.387565 GCCAAGCGAAAAAGAACCCA 59.612 50.000 0.00 0.00 0.00 4.51
2366 2379 0.319900 AGAGTGCTTCATCAACGCGT 60.320 50.000 5.58 5.58 0.00 6.01
2469 2482 6.889301 ATATCATCAGTATGCAAACCTTGG 57.111 37.500 0.00 0.00 34.76 3.61
2508 2527 9.308000 AGACAGATAAATGGGTGTCAATAAAAA 57.692 29.630 4.30 0.00 41.52 1.94
2540 2559 8.240267 ACAGTAGTATCAGAATAAAGGAGGAC 57.760 38.462 0.00 0.00 0.00 3.85
2793 2814 2.303022 CCTCGGCCATTATCCTACACAT 59.697 50.000 2.24 0.00 0.00 3.21
3069 3090 0.580104 GGGTCGTTCGTGACAAACAG 59.420 55.000 7.33 0.00 40.72 3.16
3101 3122 7.353525 TCTTTCAAAGGGAATGGATGCTATAA 58.646 34.615 0.00 0.00 34.91 0.98
3117 3138 6.100404 TGGATCCCATTGTTTCTTTCAAAG 57.900 37.500 9.90 0.00 0.00 2.77
3158 3179 4.766404 AAACTTTGTTATGAGAAGGGCG 57.234 40.909 0.00 0.00 0.00 6.13
3414 3435 5.801380 TGTAGTGAGAAAATAGGACAACCC 58.199 41.667 0.00 0.00 36.73 4.11
3547 3568 2.008242 ACTCTCACTCAACTGAGGCT 57.992 50.000 11.31 0.00 46.13 4.58
3561 3582 4.356289 GCTTACTGCAGCTAGTTACTCTC 58.644 47.826 15.27 0.00 42.31 3.20
3577 3598 5.239525 GTCCAATGTTCAAAGTCTGCTTACT 59.760 40.000 0.00 0.00 33.95 2.24
3940 3961 5.631119 AGGTAAACTGCAGAGGTTAACAAT 58.369 37.500 23.35 1.18 41.04 2.71
3973 3994 5.945144 TTCTGGGTAGTAGGATTTACCAC 57.055 43.478 3.39 0.00 40.89 4.16
4371 4394 3.430929 GGCATAACATCTGTCCTTCTCGT 60.431 47.826 0.00 0.00 0.00 4.18
4374 4397 3.135530 GGAGGCATAACATCTGTCCTTCT 59.864 47.826 0.00 0.00 0.00 2.85
4407 4430 3.129813 GCAGATGGATGATGCTTTGTCAA 59.870 43.478 0.00 0.00 37.00 3.18
4578 4605 2.128507 GCCACCACGAAAACCCCAA 61.129 57.895 0.00 0.00 0.00 4.12
4860 4891 9.840427 CAACCAAAGGTAGATTAACAAAGTATG 57.160 33.333 0.00 0.00 33.12 2.39
4861 4892 9.802039 TCAACCAAAGGTAGATTAACAAAGTAT 57.198 29.630 0.00 0.00 33.12 2.12
4946 4977 5.163602 TGTCGTTTTTGCACTAAAATCAGGT 60.164 36.000 0.00 0.00 38.03 4.00
5048 5079 3.319122 GGTGGAAAGGGATGCATACATTC 59.681 47.826 9.67 12.97 36.35 2.67
5089 5120 5.667539 AGACTAGTCAATAAGCAGCTGAA 57.332 39.130 24.44 1.48 0.00 3.02
5392 5423 4.525912 AACATCTTTTCCACCAATGCTC 57.474 40.909 0.00 0.00 0.00 4.26
5425 5456 9.347934 TGTGAAATAGTACAAAACAAACAGTTG 57.652 29.630 0.00 0.00 41.19 3.16
5433 5465 9.787435 ATACTCCTTGTGAAATAGTACAAAACA 57.213 29.630 0.00 0.00 36.47 2.83
5462 5494 8.970859 ATATTCCTTAAGATGACAAAGACAGG 57.029 34.615 3.36 0.00 0.00 4.00
5469 5501 9.973661 TTTTCAGGATATTCCTTAAGATGACAA 57.026 29.630 3.36 0.00 46.91 3.18
5481 5513 7.337942 AGACAGAACATGTTTTCAGGATATTCC 59.662 37.037 13.36 0.00 44.17 3.01
5544 5576 2.185494 GGCTGCTGCTCAGGTATGC 61.185 63.158 15.64 0.00 43.06 3.14
5606 5638 5.614324 TCTCTCTTCAAAAGGAACACTGA 57.386 39.130 0.00 0.00 0.00 3.41
5634 5666 6.422701 CCGACTACATCACAAAAACTAGTTCA 59.577 38.462 8.95 0.00 0.00 3.18
5664 5696 9.729281 AAATTTCCAAAAGCATGTCATCTTATT 57.271 25.926 0.00 0.00 0.00 1.40
5678 5710 7.526608 TGCGAGTGATAGTAAATTTCCAAAAG 58.473 34.615 0.00 0.00 0.00 2.27
5700 5732 2.688446 TCCACCTAGATCACTAACTGCG 59.312 50.000 0.00 0.00 0.00 5.18
5729 5761 4.645136 GGAGAGGGCCCTAACAAAATAAAG 59.355 45.833 28.78 0.00 0.00 1.85
5824 5946 7.040548 GGGTAGACATACAGTGAAGAGGTATAC 60.041 44.444 0.00 0.00 33.21 1.47
5825 5947 7.002879 GGGTAGACATACAGTGAAGAGGTATA 58.997 42.308 0.00 0.00 33.21 1.47
5826 5948 5.834204 GGGTAGACATACAGTGAAGAGGTAT 59.166 44.000 0.00 0.00 33.21 2.73
5827 5949 5.198965 GGGTAGACATACAGTGAAGAGGTA 58.801 45.833 0.00 0.00 33.21 3.08
5828 5950 4.024670 GGGTAGACATACAGTGAAGAGGT 58.975 47.826 0.00 0.00 33.21 3.85
5829 5951 3.385111 GGGGTAGACATACAGTGAAGAGG 59.615 52.174 0.00 0.00 33.21 3.69
5830 5952 4.023980 TGGGGTAGACATACAGTGAAGAG 58.976 47.826 0.00 0.00 33.21 2.85
5831 5953 3.767673 GTGGGGTAGACATACAGTGAAGA 59.232 47.826 0.00 0.00 33.21 2.87
5832 5954 3.769844 AGTGGGGTAGACATACAGTGAAG 59.230 47.826 0.00 0.00 33.21 3.02
5833 5955 3.513912 CAGTGGGGTAGACATACAGTGAA 59.486 47.826 0.00 0.00 35.14 3.18
5834 5956 3.096852 CAGTGGGGTAGACATACAGTGA 58.903 50.000 0.00 0.00 35.14 3.41
5835 5957 2.168521 CCAGTGGGGTAGACATACAGTG 59.831 54.545 0.00 0.00 33.21 3.66
5836 5958 2.467880 CCAGTGGGGTAGACATACAGT 58.532 52.381 0.00 0.00 33.21 3.55
5849 5971 4.991442 AGTATAGATACGTGACCCAGTGGG 60.991 50.000 27.67 27.67 42.49 4.61
5850 5972 4.142790 AGTATAGATACGTGACCCAGTGG 58.857 47.826 0.63 0.63 38.28 4.00
5851 5973 5.278364 GGAAGTATAGATACGTGACCCAGTG 60.278 48.000 0.00 0.00 38.28 3.66
5852 5974 4.826183 GGAAGTATAGATACGTGACCCAGT 59.174 45.833 0.00 0.00 38.28 4.00
5853 5975 4.825634 TGGAAGTATAGATACGTGACCCAG 59.174 45.833 0.00 0.00 38.28 4.45
5854 5976 4.581824 GTGGAAGTATAGATACGTGACCCA 59.418 45.833 0.00 0.00 38.28 4.51
5855 5977 4.320057 CGTGGAAGTATAGATACGTGACCC 60.320 50.000 0.00 0.00 38.28 4.46
5856 5978 4.512944 TCGTGGAAGTATAGATACGTGACC 59.487 45.833 0.00 0.00 38.28 4.02
5857 5979 5.663795 TCGTGGAAGTATAGATACGTGAC 57.336 43.478 0.00 0.00 38.28 3.67
5858 5980 6.147328 CAGATCGTGGAAGTATAGATACGTGA 59.853 42.308 0.00 0.00 38.28 4.35
5859 5981 6.307915 CAGATCGTGGAAGTATAGATACGTG 58.692 44.000 0.00 0.00 38.28 4.49
5860 5982 5.106634 GCAGATCGTGGAAGTATAGATACGT 60.107 44.000 0.00 0.00 38.28 3.57
5861 5983 5.122554 AGCAGATCGTGGAAGTATAGATACG 59.877 44.000 0.00 0.00 38.28 3.06
5862 5984 6.503589 AGCAGATCGTGGAAGTATAGATAC 57.496 41.667 0.00 0.00 0.00 2.24
5863 5985 6.071896 CCAAGCAGATCGTGGAAGTATAGATA 60.072 42.308 2.63 0.00 45.67 1.98
5864 5986 5.279206 CCAAGCAGATCGTGGAAGTATAGAT 60.279 44.000 2.63 0.00 45.67 1.98
5865 5987 4.038042 CCAAGCAGATCGTGGAAGTATAGA 59.962 45.833 2.63 0.00 45.67 1.98
5866 5988 4.302455 CCAAGCAGATCGTGGAAGTATAG 58.698 47.826 2.63 0.00 45.67 1.31
5867 5989 3.492656 GCCAAGCAGATCGTGGAAGTATA 60.493 47.826 10.75 0.00 45.67 1.47
5868 5990 2.743183 GCCAAGCAGATCGTGGAAGTAT 60.743 50.000 10.75 0.00 45.67 2.12
5869 5991 1.405526 GCCAAGCAGATCGTGGAAGTA 60.406 52.381 10.75 0.00 45.67 2.24
5870 5992 0.674895 GCCAAGCAGATCGTGGAAGT 60.675 55.000 10.75 0.00 45.67 3.01
5871 5993 0.392193 AGCCAAGCAGATCGTGGAAG 60.392 55.000 10.75 0.00 45.67 3.46
5872 5994 0.391661 GAGCCAAGCAGATCGTGGAA 60.392 55.000 10.75 0.00 45.67 3.53
5873 5995 1.219124 GAGCCAAGCAGATCGTGGA 59.781 57.895 10.75 0.00 45.67 4.02
5874 5996 1.817099 GGAGCCAAGCAGATCGTGG 60.817 63.158 4.07 4.07 45.59 4.94
5875 5997 1.817099 GGGAGCCAAGCAGATCGTG 60.817 63.158 0.00 0.00 0.00 4.35
5876 5998 2.293318 TGGGAGCCAAGCAGATCGT 61.293 57.895 0.00 0.00 0.00 3.73
5877 5999 1.817099 GTGGGAGCCAAGCAGATCG 60.817 63.158 0.00 0.00 34.18 3.69
5878 6000 1.452833 GGTGGGAGCCAAGCAGATC 60.453 63.158 0.00 0.00 34.18 2.75
5879 6001 2.679716 GGTGGGAGCCAAGCAGAT 59.320 61.111 0.00 0.00 34.18 2.90
5880 6002 3.650950 GGGTGGGAGCCAAGCAGA 61.651 66.667 0.00 0.00 34.18 4.26
5881 6003 3.635268 GAGGGTGGGAGCCAAGCAG 62.635 68.421 0.00 0.00 38.48 4.24
5882 6004 3.650950 GAGGGTGGGAGCCAAGCA 61.651 66.667 0.00 0.00 38.48 3.91
5883 6005 4.432741 GGAGGGTGGGAGCCAAGC 62.433 72.222 0.00 0.00 38.48 4.01
5884 6006 2.234296 AAGGAGGGTGGGAGCCAAG 61.234 63.158 0.00 0.00 38.48 3.61
5885 6007 2.121506 AAGGAGGGTGGGAGCCAA 60.122 61.111 0.00 0.00 38.48 4.52
5886 6008 2.935481 CAAGGAGGGTGGGAGCCA 60.935 66.667 0.00 0.00 38.48 4.75
5887 6009 4.432741 GCAAGGAGGGTGGGAGCC 62.433 72.222 0.00 0.00 35.59 4.70
5888 6010 3.334054 AGCAAGGAGGGTGGGAGC 61.334 66.667 0.00 0.00 0.00 4.70
5889 6011 1.783250 AACAGCAAGGAGGGTGGGAG 61.783 60.000 0.00 0.00 40.47 4.30
5890 6012 1.774217 AACAGCAAGGAGGGTGGGA 60.774 57.895 0.00 0.00 40.47 4.37
5891 6013 1.303643 GAACAGCAAGGAGGGTGGG 60.304 63.158 0.00 0.00 40.47 4.61
5892 6014 0.111253 AAGAACAGCAAGGAGGGTGG 59.889 55.000 0.00 0.00 40.47 4.61
5893 6015 2.859165 TAAGAACAGCAAGGAGGGTG 57.141 50.000 0.00 0.00 41.84 4.61
5894 6016 2.239907 GGATAAGAACAGCAAGGAGGGT 59.760 50.000 0.00 0.00 0.00 4.34
5895 6017 2.507471 AGGATAAGAACAGCAAGGAGGG 59.493 50.000 0.00 0.00 0.00 4.30
5896 6018 3.432890 GGAGGATAAGAACAGCAAGGAGG 60.433 52.174 0.00 0.00 0.00 4.30
5897 6019 3.432890 GGGAGGATAAGAACAGCAAGGAG 60.433 52.174 0.00 0.00 0.00 3.69
5898 6020 2.505819 GGGAGGATAAGAACAGCAAGGA 59.494 50.000 0.00 0.00 0.00 3.36
5899 6021 2.507471 AGGGAGGATAAGAACAGCAAGG 59.493 50.000 0.00 0.00 0.00 3.61
5900 6022 3.054802 ACAGGGAGGATAAGAACAGCAAG 60.055 47.826 0.00 0.00 0.00 4.01
5901 6023 2.912956 ACAGGGAGGATAAGAACAGCAA 59.087 45.455 0.00 0.00 0.00 3.91
5902 6024 2.501723 GACAGGGAGGATAAGAACAGCA 59.498 50.000 0.00 0.00 0.00 4.41
5903 6025 2.158885 GGACAGGGAGGATAAGAACAGC 60.159 54.545 0.00 0.00 0.00 4.40
5904 6026 3.133721 CAGGACAGGGAGGATAAGAACAG 59.866 52.174 0.00 0.00 0.00 3.16
5905 6027 3.107601 CAGGACAGGGAGGATAAGAACA 58.892 50.000 0.00 0.00 0.00 3.18
5906 6028 3.108376 ACAGGACAGGGAGGATAAGAAC 58.892 50.000 0.00 0.00 0.00 3.01
5907 6029 3.491766 ACAGGACAGGGAGGATAAGAA 57.508 47.619 0.00 0.00 0.00 2.52
5908 6030 4.834406 ATACAGGACAGGGAGGATAAGA 57.166 45.455 0.00 0.00 0.00 2.10
5909 6031 5.896073 AAATACAGGACAGGGAGGATAAG 57.104 43.478 0.00 0.00 0.00 1.73
5910 6032 6.447084 AGAAAAATACAGGACAGGGAGGATAA 59.553 38.462 0.00 0.00 0.00 1.75
5960 6082 2.699281 GGGGGTGTAGGGACATAGGATT 60.699 54.545 0.00 0.00 38.04 3.01
5961 6083 1.132495 GGGGGTGTAGGGACATAGGAT 60.132 57.143 0.00 0.00 38.04 3.24
6005 6127 6.106003 CCATCATACACTGTAAGCAACTACA 58.894 40.000 0.00 0.00 37.60 2.74
6010 6132 3.940852 CTGCCATCATACACTGTAAGCAA 59.059 43.478 0.00 0.00 37.60 3.91
6023 6145 5.045012 ACATTCACAGTATCTGCCATCAT 57.955 39.130 0.00 0.00 34.37 2.45
6245 6456 2.109739 ACGCGTTTTGTGGTCTGCA 61.110 52.632 5.58 0.00 0.00 4.41
6261 6472 1.264020 CCACACTGACAAATGGACACG 59.736 52.381 0.00 0.00 33.80 4.49
6265 6476 0.539438 GGGCCACACTGACAAATGGA 60.539 55.000 4.39 0.00 33.80 3.41
6299 6519 9.952188 GGTATCTTAAAAATGCAGGTATCTTTC 57.048 33.333 0.00 0.00 0.00 2.62
6304 6524 6.777580 CAGGGGTATCTTAAAAATGCAGGTAT 59.222 38.462 0.00 0.00 0.00 2.73
6406 6633 4.884247 AGTATATTAAACTGGAGCTCGGC 58.116 43.478 7.83 0.00 0.00 5.54
6673 6901 9.326413 CAACTAAAAGGAAGAGTAAGACAAGAA 57.674 33.333 0.00 0.00 0.00 2.52
6677 6905 7.369551 TCCAACTAAAAGGAAGAGTAAGACA 57.630 36.000 0.00 0.00 0.00 3.41
6683 6911 4.706842 TGCTCCAACTAAAAGGAAGAGT 57.293 40.909 0.00 0.00 32.57 3.24
6894 7122 2.555757 GACTGAAGGTGCAAGCAGATTT 59.444 45.455 11.75 0.00 36.26 2.17
6935 7163 7.009179 TCACTATCTTTGACTTCAGTTGGAT 57.991 36.000 0.00 0.00 0.00 3.41
7013 7241 7.560368 TCAATAAAAACTTTTTGGCAGAGGAA 58.440 30.769 9.38 0.00 0.00 3.36
7051 7279 4.093998 GCTCAAACTAGACATCACCACATG 59.906 45.833 0.00 0.00 0.00 3.21
7075 7303 7.944729 AAAATACAAACAGCCTGACATCTAT 57.055 32.000 0.00 0.00 0.00 1.98
7271 7499 1.959282 CTTTGAATATCAGCCCAGCCC 59.041 52.381 0.00 0.00 0.00 5.19
7272 7500 2.620585 GTCTTTGAATATCAGCCCAGCC 59.379 50.000 0.00 0.00 0.00 4.85
7273 7501 3.314635 CAGTCTTTGAATATCAGCCCAGC 59.685 47.826 0.00 0.00 0.00 4.85
7274 7502 4.774124 TCAGTCTTTGAATATCAGCCCAG 58.226 43.478 0.00 0.00 31.34 4.45
7275 7503 4.842531 TCAGTCTTTGAATATCAGCCCA 57.157 40.909 0.00 0.00 31.34 5.36
7585 7813 7.532682 TGCTTTCAAGTTTTGGTTTATGTTC 57.467 32.000 0.00 0.00 0.00 3.18
7665 7921 6.801539 TTTGTGTGAACCAGATATGACTTC 57.198 37.500 0.00 0.00 0.00 3.01
7713 7969 8.155821 TCCGTATCTAGACAAATCTAAGACAG 57.844 38.462 0.00 0.00 36.98 3.51
7842 8133 3.449737 CCGGGATTCAGGACTACAAGTTA 59.550 47.826 0.00 0.00 0.00 2.24
7843 8134 2.236395 CCGGGATTCAGGACTACAAGTT 59.764 50.000 0.00 0.00 0.00 2.66
7848 8139 0.759346 ATGCCGGGATTCAGGACTAC 59.241 55.000 0.92 0.00 0.00 2.73
7849 8140 2.158370 TCTATGCCGGGATTCAGGACTA 60.158 50.000 15.79 0.00 0.00 2.59
8035 8332 4.217983 ACGAACTTGTAAGATCCTTCGAGT 59.782 41.667 16.72 0.00 35.59 4.18
8059 8356 1.130054 AAGCAGGGCTCTGGAAGTCA 61.130 55.000 17.16 0.00 38.25 3.41
8208 8505 1.843851 AGCCTAACAAATCATCCCGGA 59.156 47.619 0.73 0.00 0.00 5.14
8332 8635 7.275341 ACAAATGCAACATACAATTACAATCCG 59.725 33.333 0.00 0.00 0.00 4.18
8418 8721 6.808008 TCACTTCAGAATCTTTCCAATGTC 57.192 37.500 0.00 0.00 0.00 3.06
8422 8725 7.822161 TCAAATCACTTCAGAATCTTTCCAA 57.178 32.000 0.00 0.00 0.00 3.53
8493 8834 1.710809 ACAGTCCCCTAGCAATTTGGT 59.289 47.619 6.33 6.33 0.00 3.67
8591 8932 3.578688 GTTTTGATGGACAGCATTGGAC 58.421 45.455 0.00 0.00 0.00 4.02
8595 8936 2.513753 TCCGTTTTGATGGACAGCATT 58.486 42.857 0.00 0.00 0.00 3.56
8597 8938 3.715871 TCCGTTTTGATGGACAGCA 57.284 47.368 0.00 0.00 0.00 4.41
8701 9042 4.077184 ATCACCGAAAGCCGCCGA 62.077 61.111 0.00 0.00 36.84 5.54
8702 9043 3.864686 CATCACCGAAAGCCGCCG 61.865 66.667 0.00 0.00 36.84 6.46
8707 9048 0.524816 CATGCAGCATCACCGAAAGC 60.525 55.000 4.38 0.00 0.00 3.51
8708 9049 0.099968 CCATGCAGCATCACCGAAAG 59.900 55.000 4.38 0.00 0.00 2.62
8709 9050 0.322366 TCCATGCAGCATCACCGAAA 60.322 50.000 4.38 0.00 0.00 3.46
8710 9051 0.107066 ATCCATGCAGCATCACCGAA 60.107 50.000 4.38 0.00 0.00 4.30
8711 9052 0.816421 CATCCATGCAGCATCACCGA 60.816 55.000 4.38 0.00 0.00 4.69
8712 9053 1.652563 CATCCATGCAGCATCACCG 59.347 57.895 4.38 0.00 0.00 4.94
8713 9054 2.038690 CCATCCATGCAGCATCACC 58.961 57.895 4.38 0.00 0.00 4.02
8767 9108 1.907807 GCAACACCTGCCAATCCCA 60.908 57.895 0.00 0.00 46.13 4.37
8811 9152 0.874390 GTTTCACATCAAGAGCCGCA 59.126 50.000 0.00 0.00 0.00 5.69
8822 9163 2.956987 GCAGCAGCCGTTTCACAT 59.043 55.556 0.00 0.00 33.58 3.21
8939 9280 1.129251 CTGTCATCACAATGCCACGTC 59.871 52.381 0.00 0.00 32.58 4.34
9039 9380 5.382618 ACACATTCAAGAGAAATTGCTCC 57.617 39.130 10.04 0.00 37.29 4.70
9056 9397 2.777459 TTACCCCCAACCAAACACAT 57.223 45.000 0.00 0.00 0.00 3.21
9057 9398 2.777459 ATTACCCCCAACCAAACACA 57.223 45.000 0.00 0.00 0.00 3.72
9058 9399 4.409187 TCTAATTACCCCCAACCAAACAC 58.591 43.478 0.00 0.00 0.00 3.32
9072 9413 8.431593 CAATTCTCATTCGCTAGCTCTAATTAC 58.568 37.037 13.93 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.