Multiple sequence alignment - TraesCS5D01G177400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G177400 chr5D 100.000 3077 0 0 1 3077 277132720 277135796 0.000000e+00 5683.0
1 TraesCS5D01G177400 chr5D 91.349 393 25 8 2419 2803 512393779 512393388 2.100000e-146 529.0
2 TraesCS5D01G177400 chr5B 96.194 1051 38 2 897 1945 314972402 314973452 0.000000e+00 1718.0
3 TraesCS5D01G177400 chr5B 88.806 268 30 0 2804 3071 314981458 314981725 2.290000e-86 329.0
4 TraesCS5D01G177400 chr5A 94.190 1050 47 6 1018 2058 366121584 366122628 0.000000e+00 1589.0
5 TraesCS5D01G177400 chr5A 91.727 278 19 1 2804 3077 366122771 366123048 1.730000e-102 383.0
6 TraesCS5D01G177400 chr5A 81.659 229 38 4 2116 2343 340428103 340428328 1.460000e-43 187.0
7 TraesCS5D01G177400 chr5A 93.548 62 2 2 840 900 366121375 366121435 1.170000e-14 91.6
8 TraesCS5D01G177400 chr5A 94.737 57 3 0 2060 2116 366122612 366122668 4.230000e-14 89.8
9 TraesCS5D01G177400 chr7D 87.234 846 92 13 1 836 365974824 365975663 0.000000e+00 950.0
10 TraesCS5D01G177400 chr7D 91.479 399 24 9 2420 2809 578817576 578817973 9.710000e-150 540.0
11 TraesCS5D01G177400 chr7D 81.982 111 19 1 2968 3077 229892886 229892996 3.270000e-15 93.5
12 TraesCS5D01G177400 chr6A 86.643 846 101 7 1 841 597334147 597333309 0.000000e+00 926.0
13 TraesCS5D01G177400 chr6A 91.667 396 25 6 2416 2805 460450813 460450420 2.700000e-150 542.0
14 TraesCS5D01G177400 chr6A 79.264 299 33 13 2114 2383 422775952 422776250 6.780000e-42 182.0
15 TraesCS5D01G177400 chr1A 87.927 762 84 5 1 757 462633224 462632466 0.000000e+00 891.0
16 TraesCS5D01G177400 chr1A 78.125 224 20 16 2189 2383 578473028 578473251 6.970000e-22 115.0
17 TraesCS5D01G177400 chr4B 85.332 859 104 15 3 845 180628117 180628969 0.000000e+00 869.0
18 TraesCS5D01G177400 chr1D 85.194 851 106 15 1 837 208082698 208083542 0.000000e+00 856.0
19 TraesCS5D01G177400 chr1D 90.561 392 29 8 2419 2804 481701887 481702276 2.120000e-141 512.0
20 TraesCS5D01G177400 chr1D 81.333 225 40 2 2125 2349 481338492 481338270 6.780000e-42 182.0
21 TraesCS5D01G177400 chr3B 84.994 853 109 14 3 840 637050187 637049339 0.000000e+00 848.0
22 TraesCS5D01G177400 chr3B 91.003 389 29 6 2419 2803 398956499 398956885 1.260000e-143 520.0
23 TraesCS5D01G177400 chr3B 90.281 391 31 7 2419 2803 468533329 468533718 3.540000e-139 505.0
24 TraesCS5D01G177400 chr3A 88.252 698 75 6 7 698 335484538 335483842 0.000000e+00 828.0
25 TraesCS5D01G177400 chr3A 83.700 227 36 1 2116 2342 545302991 545302766 2.400000e-51 213.0
26 TraesCS5D01G177400 chr7B 84.444 810 115 8 2 803 635317992 635317186 0.000000e+00 787.0
27 TraesCS5D01G177400 chr2B 82.360 856 123 20 1 836 543173847 543173000 0.000000e+00 719.0
28 TraesCS5D01G177400 chr2B 90.306 392 30 6 2419 2803 28879361 28878971 9.850000e-140 507.0
29 TraesCS5D01G177400 chr2B 83.607 61 10 0 2971 3031 716199524 716199464 1.190000e-04 58.4
30 TraesCS5D01G177400 chr2D 90.840 393 27 8 2419 2803 16987576 16987185 4.550000e-143 518.0
31 TraesCS5D01G177400 chr2D 85.294 272 37 3 2114 2384 128418360 128418629 8.400000e-71 278.0
32 TraesCS5D01G177400 chr2D 81.900 221 38 2 2120 2340 178289139 178288921 5.240000e-43 185.0
33 TraesCS5D01G177400 chr6D 90.231 389 33 3 2421 2804 81115709 81115321 1.270000e-138 503.0
34 TraesCS5D01G177400 chr6D 96.721 61 2 0 2323 2383 336995784 336995844 5.430000e-18 102.0
35 TraesCS5D01G177400 chr6B 82.657 271 43 4 2114 2383 233043027 233043294 1.430000e-58 237.0
36 TraesCS5D01G177400 chr6B 98.305 59 1 0 2326 2384 483500574 483500516 1.510000e-18 104.0
37 TraesCS5D01G177400 chr3D 85.217 230 32 2 2114 2343 527520245 527520472 5.130000e-58 235.0
38 TraesCS5D01G177400 chr4D 83.117 231 34 5 2114 2343 108913479 108913705 4.020000e-49 206.0
39 TraesCS5D01G177400 chr7A 84.360 211 27 5 2145 2351 246599447 246599655 5.200000e-48 202.0
40 TraesCS5D01G177400 chr7A 94.118 68 3 1 2319 2385 39274923 39274856 5.430000e-18 102.0
41 TraesCS5D01G177400 chr2A 80.292 274 25 12 2140 2384 52051319 52051592 2.440000e-41 180.0
42 TraesCS5D01G177400 chr2A 97.143 35 1 0 2968 3002 63612553 63612587 3.310000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G177400 chr5D 277132720 277135796 3076 False 5683.00 5683 100.0000 1 3077 1 chr5D.!!$F1 3076
1 TraesCS5D01G177400 chr5B 314972402 314973452 1050 False 1718.00 1718 96.1940 897 1945 1 chr5B.!!$F1 1048
2 TraesCS5D01G177400 chr5A 366121375 366123048 1673 False 538.35 1589 93.5505 840 3077 4 chr5A.!!$F2 2237
3 TraesCS5D01G177400 chr7D 365974824 365975663 839 False 950.00 950 87.2340 1 836 1 chr7D.!!$F2 835
4 TraesCS5D01G177400 chr6A 597333309 597334147 838 True 926.00 926 86.6430 1 841 1 chr6A.!!$R2 840
5 TraesCS5D01G177400 chr1A 462632466 462633224 758 True 891.00 891 87.9270 1 757 1 chr1A.!!$R1 756
6 TraesCS5D01G177400 chr4B 180628117 180628969 852 False 869.00 869 85.3320 3 845 1 chr4B.!!$F1 842
7 TraesCS5D01G177400 chr1D 208082698 208083542 844 False 856.00 856 85.1940 1 837 1 chr1D.!!$F1 836
8 TraesCS5D01G177400 chr3B 637049339 637050187 848 True 848.00 848 84.9940 3 840 1 chr3B.!!$R1 837
9 TraesCS5D01G177400 chr3A 335483842 335484538 696 True 828.00 828 88.2520 7 698 1 chr3A.!!$R1 691
10 TraesCS5D01G177400 chr7B 635317186 635317992 806 True 787.00 787 84.4440 2 803 1 chr7B.!!$R1 801
11 TraesCS5D01G177400 chr2B 543173000 543173847 847 True 719.00 719 82.3600 1 836 1 chr2B.!!$R2 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 973 0.390735 ACGTAATCCGCAGTTCCCAC 60.391 55.0 0.0 0.0 41.42 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 2342 0.034896 AAGTCACGGTAGGTGCCTTG 59.965 55.0 0.0 0.0 42.81 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 0.824109 CGGCATAGAGAAGGGTGTGA 59.176 55.000 0.00 0.00 0.00 3.58
275 276 3.081133 CAATCCGTCGAACGCCTG 58.919 61.111 0.00 0.00 40.91 4.85
461 465 1.028905 CACCGGCAACAAGGAGAAAA 58.971 50.000 0.00 0.00 0.00 2.29
540 548 4.410400 GACGGCCCTGGTGGAAGG 62.410 72.222 0.00 0.00 35.39 3.46
652 677 2.846532 CCAAGGCAGGACAAGGGT 59.153 61.111 0.00 0.00 0.00 4.34
692 718 2.355363 TGTCCGTTCGACCGCAAG 60.355 61.111 0.00 0.00 41.18 4.01
722 749 2.649531 ACTTGGTCGAAAATGGGTCA 57.350 45.000 0.00 0.00 0.00 4.02
726 753 4.160626 ACTTGGTCGAAAATGGGTCAAAAA 59.839 37.500 0.00 0.00 0.00 1.94
758 785 2.292016 ACGAACAATGATCCGTTTGCAA 59.708 40.909 0.00 0.00 30.86 4.08
763 791 1.614996 ATGATCCGTTTGCAACCACA 58.385 45.000 0.00 0.00 0.00 4.17
769 797 1.202348 CCGTTTGCAACCACACATTGA 60.202 47.619 0.00 0.00 0.00 2.57
782 810 5.940470 ACCACACATTGAGAGGTCTATTTTC 59.060 40.000 0.00 0.00 0.00 2.29
794 822 3.867493 GGTCTATTTTCTCCGTTTACCCG 59.133 47.826 0.00 0.00 0.00 5.28
795 823 4.498241 GTCTATTTTCTCCGTTTACCCGT 58.502 43.478 0.00 0.00 0.00 5.28
851 881 2.203877 TTGGCCTCACCGTACCCT 60.204 61.111 3.32 0.00 43.94 4.34
890 920 3.712881 GCCACGAGCAACACGGTC 61.713 66.667 0.00 0.00 42.97 4.79
892 922 2.279851 CACGAGCAACACGGTCCA 60.280 61.111 0.00 0.00 39.03 4.02
893 923 1.667830 CACGAGCAACACGGTCCAT 60.668 57.895 0.00 0.00 39.03 3.41
894 924 1.667830 ACGAGCAACACGGTCCATG 60.668 57.895 0.00 0.00 39.03 3.66
895 925 1.374125 CGAGCAACACGGTCCATGA 60.374 57.895 0.00 0.00 39.03 3.07
917 973 0.390735 ACGTAATCCGCAGTTCCCAC 60.391 55.000 0.00 0.00 41.42 4.61
945 1003 1.600636 CCCAACTGCACATCCACGT 60.601 57.895 0.00 0.00 0.00 4.49
964 1022 4.452733 CCTCCGGCGACTCCAACC 62.453 72.222 9.30 0.00 34.01 3.77
999 1057 3.330720 GCCAGTAGCCACACCCCT 61.331 66.667 0.00 0.00 34.35 4.79
1010 1068 3.365265 CACCCCTCGCCAAACAGC 61.365 66.667 0.00 0.00 0.00 4.40
1050 1127 2.197605 CCAACCCAACAACCGACCC 61.198 63.158 0.00 0.00 0.00 4.46
1123 1206 2.759973 TCGCTGAAGCTCCGGGAT 60.760 61.111 0.00 0.00 39.32 3.85
1279 1362 2.722487 CTCTCCTACGCGCCGAAT 59.278 61.111 5.73 0.00 0.00 3.34
1327 1410 2.203167 TCGCTCGTCCTCGGCTAT 60.203 61.111 0.00 0.00 37.69 2.97
1754 1837 2.088423 GAGAGAACGAGAAGCTGAGGA 58.912 52.381 0.00 0.00 0.00 3.71
1760 1843 1.391157 CGAGAAGCTGAGGAGGGAGG 61.391 65.000 0.00 0.00 0.00 4.30
1807 1890 3.023119 GCAGATGAGAGAGAAGGAGACA 58.977 50.000 0.00 0.00 0.00 3.41
1908 1991 1.503542 CGCAAGTGAATCCTGCCAC 59.496 57.895 0.00 0.00 0.00 5.01
1973 2056 5.475719 TGTTGCTACCAGTGTACTTGTATC 58.524 41.667 0.00 0.00 0.00 2.24
1974 2057 5.011227 TGTTGCTACCAGTGTACTTGTATCA 59.989 40.000 0.00 0.00 0.00 2.15
1975 2058 5.731957 TGCTACCAGTGTACTTGTATCAA 57.268 39.130 0.00 0.00 0.00 2.57
1976 2059 5.475719 TGCTACCAGTGTACTTGTATCAAC 58.524 41.667 0.00 0.00 0.00 3.18
1977 2060 4.561606 GCTACCAGTGTACTTGTATCAACG 59.438 45.833 0.00 0.00 0.00 4.10
2030 2115 6.748333 ACTAGAAGCAATGTACTGTACGTA 57.252 37.500 12.73 0.00 0.00 3.57
2058 2143 9.891828 CAAATACAGTAGAAGCAATGTTTGTAA 57.108 29.630 0.00 0.00 0.00 2.41
2063 2148 9.502091 ACAGTAGAAGCAATGTTTGTAATAGAA 57.498 29.630 0.00 0.00 0.00 2.10
2064 2149 9.979270 CAGTAGAAGCAATGTTTGTAATAGAAG 57.021 33.333 0.00 0.00 0.00 2.85
2065 2150 8.669243 AGTAGAAGCAATGTTTGTAATAGAAGC 58.331 33.333 0.00 0.00 0.00 3.86
2066 2151 7.452880 AGAAGCAATGTTTGTAATAGAAGCA 57.547 32.000 0.00 0.00 0.00 3.91
2067 2152 7.885297 AGAAGCAATGTTTGTAATAGAAGCAA 58.115 30.769 0.00 0.00 0.00 3.91
2068 2153 8.526147 AGAAGCAATGTTTGTAATAGAAGCAAT 58.474 29.630 0.00 0.00 0.00 3.56
2069 2154 8.470040 AAGCAATGTTTGTAATAGAAGCAATG 57.530 30.769 0.00 0.00 0.00 2.82
2070 2155 7.605449 AGCAATGTTTGTAATAGAAGCAATGT 58.395 30.769 4.55 0.00 0.00 2.71
2071 2156 8.090214 AGCAATGTTTGTAATAGAAGCAATGTT 58.910 29.630 4.55 0.00 0.00 2.71
2072 2157 8.711457 GCAATGTTTGTAATAGAAGCAATGTTT 58.289 29.630 4.55 0.00 0.00 2.83
2074 2159 9.762933 AATGTTTGTAATAGAAGCAATGTTTGT 57.237 25.926 0.00 0.00 0.00 2.83
2096 2181 2.430694 ACTTGTATCAGTCTATGCCGCA 59.569 45.455 0.00 0.00 0.00 5.69
2097 2182 3.118775 ACTTGTATCAGTCTATGCCGCAA 60.119 43.478 0.00 0.00 0.00 4.85
2119 2204 2.494059 GCTCTTTAGCTGACACCAACA 58.506 47.619 0.00 0.00 45.85 3.33
2120 2205 3.077359 GCTCTTTAGCTGACACCAACAT 58.923 45.455 0.00 0.00 45.85 2.71
2121 2206 3.120060 GCTCTTTAGCTGACACCAACATG 60.120 47.826 0.00 0.00 45.85 3.21
2122 2207 4.067896 CTCTTTAGCTGACACCAACATGT 58.932 43.478 0.00 0.00 34.78 3.21
2123 2208 3.814842 TCTTTAGCTGACACCAACATGTG 59.185 43.478 0.00 0.00 42.05 3.21
2137 2222 4.540359 AACATGTGGTTGGGATGATTTG 57.460 40.909 0.00 0.00 38.60 2.32
2138 2223 2.234414 ACATGTGGTTGGGATGATTTGC 59.766 45.455 0.00 0.00 0.00 3.68
2139 2224 2.307496 TGTGGTTGGGATGATTTGCT 57.693 45.000 0.00 0.00 0.00 3.91
2140 2225 1.894466 TGTGGTTGGGATGATTTGCTG 59.106 47.619 0.00 0.00 0.00 4.41
2141 2226 1.205417 GTGGTTGGGATGATTTGCTGG 59.795 52.381 0.00 0.00 0.00 4.85
2142 2227 1.076841 TGGTTGGGATGATTTGCTGGA 59.923 47.619 0.00 0.00 0.00 3.86
2143 2228 1.478105 GGTTGGGATGATTTGCTGGAC 59.522 52.381 0.00 0.00 0.00 4.02
2144 2229 2.170166 GTTGGGATGATTTGCTGGACA 58.830 47.619 0.00 0.00 0.00 4.02
2145 2230 2.133281 TGGGATGATTTGCTGGACAG 57.867 50.000 0.00 0.00 0.00 3.51
2146 2231 1.355381 TGGGATGATTTGCTGGACAGT 59.645 47.619 0.82 0.00 0.00 3.55
2147 2232 1.747355 GGGATGATTTGCTGGACAGTG 59.253 52.381 0.82 0.00 0.00 3.66
2148 2233 1.747355 GGATGATTTGCTGGACAGTGG 59.253 52.381 0.82 0.00 0.00 4.00
2149 2234 2.440409 GATGATTTGCTGGACAGTGGT 58.560 47.619 0.82 0.00 0.00 4.16
2150 2235 3.609853 GATGATTTGCTGGACAGTGGTA 58.390 45.455 0.82 0.00 0.00 3.25
2151 2236 3.719268 TGATTTGCTGGACAGTGGTAT 57.281 42.857 0.82 0.00 0.00 2.73
2152 2237 3.609853 TGATTTGCTGGACAGTGGTATC 58.390 45.455 0.82 1.33 0.00 2.24
2153 2238 2.489938 TTTGCTGGACAGTGGTATCC 57.510 50.000 0.82 0.00 35.37 2.59
2154 2239 0.618458 TTGCTGGACAGTGGTATCCC 59.382 55.000 0.82 0.00 33.69 3.85
2155 2240 1.271840 TGCTGGACAGTGGTATCCCC 61.272 60.000 0.82 0.00 33.69 4.81
2156 2241 1.271840 GCTGGACAGTGGTATCCCCA 61.272 60.000 0.82 0.00 42.51 4.96
2157 2242 0.833287 CTGGACAGTGGTATCCCCAG 59.167 60.000 0.00 0.00 46.45 4.45
2158 2243 1.271840 TGGACAGTGGTATCCCCAGC 61.272 60.000 0.00 0.00 46.45 4.85
2159 2244 1.527370 GACAGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
2160 2245 1.984288 GACAGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
2161 2246 2.000701 CAGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
2162 2247 1.006092 AGTGGTATCCCCAGCCCAT 59.994 57.895 0.00 0.00 46.45 4.00
2163 2248 1.062488 AGTGGTATCCCCAGCCCATC 61.062 60.000 0.00 0.00 46.45 3.51
2164 2249 1.005423 TGGTATCCCCAGCCCATCA 59.995 57.895 0.00 0.00 38.72 3.07
2165 2250 1.061905 TGGTATCCCCAGCCCATCAG 61.062 60.000 0.00 0.00 38.72 2.90
2166 2251 1.763770 GTATCCCCAGCCCATCAGG 59.236 63.158 0.00 0.00 39.47 3.86
2167 2252 0.768221 GTATCCCCAGCCCATCAGGA 60.768 60.000 0.00 0.00 38.24 3.86
2168 2253 0.196888 TATCCCCAGCCCATCAGGAT 59.803 55.000 0.00 0.00 40.43 3.24
2169 2254 0.703758 ATCCCCAGCCCATCAGGATT 60.704 55.000 0.00 0.00 38.24 3.01
2170 2255 0.925720 TCCCCAGCCCATCAGGATTT 60.926 55.000 0.00 0.00 38.24 2.17
2171 2256 0.852842 CCCCAGCCCATCAGGATTTA 59.147 55.000 0.00 0.00 38.24 1.40
2172 2257 1.217689 CCCCAGCCCATCAGGATTTAA 59.782 52.381 0.00 0.00 38.24 1.52
2173 2258 2.590821 CCCAGCCCATCAGGATTTAAG 58.409 52.381 0.00 0.00 38.24 1.85
2174 2259 2.091665 CCCAGCCCATCAGGATTTAAGT 60.092 50.000 0.00 0.00 38.24 2.24
2175 2260 3.217626 CCAGCCCATCAGGATTTAAGTC 58.782 50.000 0.00 0.00 38.24 3.01
2176 2261 3.217626 CAGCCCATCAGGATTTAAGTCC 58.782 50.000 8.94 8.94 38.24 3.85
2186 2271 4.698575 AGGATTTAAGTCCTGATTCTCGC 58.301 43.478 18.08 0.00 46.76 5.03
2187 2272 4.162320 AGGATTTAAGTCCTGATTCTCGCA 59.838 41.667 18.08 0.00 46.76 5.10
2188 2273 5.059833 GGATTTAAGTCCTGATTCTCGCAT 58.940 41.667 9.67 0.00 35.32 4.73
2189 2274 5.529060 GGATTTAAGTCCTGATTCTCGCATT 59.471 40.000 9.67 0.00 35.32 3.56
2190 2275 6.038714 GGATTTAAGTCCTGATTCTCGCATTT 59.961 38.462 9.67 0.00 35.32 2.32
2191 2276 7.226720 GGATTTAAGTCCTGATTCTCGCATTTA 59.773 37.037 9.67 0.00 35.32 1.40
2192 2277 8.682936 ATTTAAGTCCTGATTCTCGCATTTAT 57.317 30.769 0.00 0.00 0.00 1.40
2193 2278 8.506168 TTTAAGTCCTGATTCTCGCATTTATT 57.494 30.769 0.00 0.00 0.00 1.40
2194 2279 6.610741 AAGTCCTGATTCTCGCATTTATTC 57.389 37.500 0.00 0.00 0.00 1.75
2195 2280 5.923204 AGTCCTGATTCTCGCATTTATTCT 58.077 37.500 0.00 0.00 0.00 2.40
2196 2281 5.757320 AGTCCTGATTCTCGCATTTATTCTG 59.243 40.000 0.00 0.00 0.00 3.02
2197 2282 5.049818 GTCCTGATTCTCGCATTTATTCTGG 60.050 44.000 0.00 0.00 0.00 3.86
2198 2283 5.059161 CCTGATTCTCGCATTTATTCTGGA 58.941 41.667 0.00 0.00 0.00 3.86
2199 2284 5.528690 CCTGATTCTCGCATTTATTCTGGAA 59.471 40.000 0.00 0.00 0.00 3.53
2200 2285 6.206243 CCTGATTCTCGCATTTATTCTGGAAT 59.794 38.462 1.40 1.40 34.93 3.01
2201 2286 7.255381 CCTGATTCTCGCATTTATTCTGGAATT 60.255 37.037 1.01 0.00 32.50 2.17
2202 2287 8.675705 TGATTCTCGCATTTATTCTGGAATTA 57.324 30.769 1.01 0.00 32.50 1.40
2203 2288 9.288576 TGATTCTCGCATTTATTCTGGAATTAT 57.711 29.630 1.01 0.00 32.50 1.28
2218 2303 8.237811 TCTGGAATTATTTTAGGATTTCTGGC 57.762 34.615 0.00 0.00 0.00 4.85
2219 2304 7.013274 TCTGGAATTATTTTAGGATTTCTGGCG 59.987 37.037 0.00 0.00 0.00 5.69
2220 2305 6.831353 TGGAATTATTTTAGGATTTCTGGCGA 59.169 34.615 0.00 0.00 0.00 5.54
2221 2306 7.505585 TGGAATTATTTTAGGATTTCTGGCGAT 59.494 33.333 0.00 0.00 0.00 4.58
2222 2307 9.010029 GGAATTATTTTAGGATTTCTGGCGATA 57.990 33.333 0.00 0.00 0.00 2.92
2223 2308 9.827411 GAATTATTTTAGGATTTCTGGCGATAC 57.173 33.333 0.00 0.00 0.00 2.24
2224 2309 9.574516 AATTATTTTAGGATTTCTGGCGATACT 57.425 29.630 0.00 0.00 0.00 2.12
2225 2310 8.603242 TTATTTTAGGATTTCTGGCGATACTC 57.397 34.615 0.00 0.00 0.00 2.59
2226 2311 5.871396 TTTAGGATTTCTGGCGATACTCT 57.129 39.130 0.00 0.00 0.00 3.24
2227 2312 5.871396 TTAGGATTTCTGGCGATACTCTT 57.129 39.130 0.00 0.00 0.00 2.85
2228 2313 4.762289 AGGATTTCTGGCGATACTCTTT 57.238 40.909 0.00 0.00 0.00 2.52
2229 2314 4.698575 AGGATTTCTGGCGATACTCTTTC 58.301 43.478 0.00 0.00 0.00 2.62
2230 2315 4.162320 AGGATTTCTGGCGATACTCTTTCA 59.838 41.667 0.00 0.00 0.00 2.69
2231 2316 4.509600 GGATTTCTGGCGATACTCTTTCAG 59.490 45.833 0.00 0.00 0.00 3.02
2232 2317 4.537135 TTTCTGGCGATACTCTTTCAGT 57.463 40.909 0.00 0.00 39.41 3.41
2233 2318 3.510388 TCTGGCGATACTCTTTCAGTG 57.490 47.619 0.00 0.00 36.43 3.66
2234 2319 2.166459 TCTGGCGATACTCTTTCAGTGG 59.834 50.000 0.00 0.00 36.43 4.00
2235 2320 1.207089 TGGCGATACTCTTTCAGTGGG 59.793 52.381 0.00 0.00 36.43 4.61
2236 2321 1.480954 GGCGATACTCTTTCAGTGGGA 59.519 52.381 0.00 0.00 36.43 4.37
2237 2322 2.482142 GGCGATACTCTTTCAGTGGGAG 60.482 54.545 0.00 0.00 36.43 4.30
2238 2323 2.482142 GCGATACTCTTTCAGTGGGAGG 60.482 54.545 11.33 0.00 36.43 4.30
2239 2324 3.024547 CGATACTCTTTCAGTGGGAGGA 58.975 50.000 11.33 5.31 36.43 3.71
2240 2325 3.067461 CGATACTCTTTCAGTGGGAGGAG 59.933 52.174 11.33 8.51 36.43 3.69
2241 2326 2.704190 ACTCTTTCAGTGGGAGGAGA 57.296 50.000 11.58 0.00 32.26 3.71
2242 2327 2.252714 ACTCTTTCAGTGGGAGGAGAC 58.747 52.381 11.58 0.00 32.26 3.36
2243 2328 1.203523 CTCTTTCAGTGGGAGGAGACG 59.796 57.143 0.00 0.00 32.47 4.18
2244 2329 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
2245 2330 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
2246 2331 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
2247 2332 0.112606 TCAGTGGGAGGAGACGTTCT 59.887 55.000 0.00 0.00 0.00 3.01
2248 2333 0.528470 CAGTGGGAGGAGACGTTCTC 59.472 60.000 0.00 0.00 42.66 2.87
2249 2334 0.112606 AGTGGGAGGAGACGTTCTCA 59.887 55.000 14.26 0.93 45.12 3.27
2250 2335 1.187087 GTGGGAGGAGACGTTCTCAT 58.813 55.000 14.26 8.94 45.12 2.90
2258 2343 5.100344 AGGAGACGTTCTCATCTACTACA 57.900 43.478 14.26 0.00 45.12 2.74
2259 2344 5.498393 AGGAGACGTTCTCATCTACTACAA 58.502 41.667 14.26 0.00 45.12 2.41
2260 2345 5.587043 AGGAGACGTTCTCATCTACTACAAG 59.413 44.000 14.26 0.00 45.12 3.16
2261 2346 5.220892 GGAGACGTTCTCATCTACTACAAGG 60.221 48.000 14.26 0.00 45.12 3.61
2262 2347 4.096682 AGACGTTCTCATCTACTACAAGGC 59.903 45.833 0.00 0.00 0.00 4.35
2263 2348 3.762288 ACGTTCTCATCTACTACAAGGCA 59.238 43.478 0.00 0.00 0.00 4.75
2264 2349 4.106197 CGTTCTCATCTACTACAAGGCAC 58.894 47.826 0.00 0.00 0.00 5.01
2265 2350 4.434520 GTTCTCATCTACTACAAGGCACC 58.565 47.826 0.00 0.00 0.00 5.01
2266 2351 3.982516 TCTCATCTACTACAAGGCACCT 58.017 45.455 0.00 0.00 0.00 4.00
2267 2352 5.125367 TCTCATCTACTACAAGGCACCTA 57.875 43.478 0.00 0.00 0.00 3.08
2268 2353 4.888239 TCTCATCTACTACAAGGCACCTAC 59.112 45.833 0.00 0.00 0.00 3.18
2269 2354 3.958798 TCATCTACTACAAGGCACCTACC 59.041 47.826 0.00 0.00 0.00 3.18
2270 2355 2.372264 TCTACTACAAGGCACCTACCG 58.628 52.381 0.00 0.00 33.69 4.02
2271 2356 2.097825 CTACTACAAGGCACCTACCGT 58.902 52.381 0.00 0.00 33.69 4.83
2272 2357 0.606604 ACTACAAGGCACCTACCGTG 59.393 55.000 0.00 0.00 46.03 4.94
2273 2358 0.892755 CTACAAGGCACCTACCGTGA 59.107 55.000 3.49 0.00 46.20 4.35
2278 2363 4.164252 GCACCTACCGTGACTTCG 57.836 61.111 0.00 0.00 46.20 3.79
2279 2364 1.288127 GCACCTACCGTGACTTCGT 59.712 57.895 0.00 0.00 46.20 3.85
2280 2365 0.523072 GCACCTACCGTGACTTCGTA 59.477 55.000 0.00 0.00 46.20 3.43
2281 2366 1.068333 GCACCTACCGTGACTTCGTAA 60.068 52.381 0.00 0.00 46.20 3.18
2282 2367 2.607771 GCACCTACCGTGACTTCGTAAA 60.608 50.000 0.00 0.00 46.20 2.01
2283 2368 3.641648 CACCTACCGTGACTTCGTAAAA 58.358 45.455 0.00 0.00 46.20 1.52
2284 2369 4.240096 CACCTACCGTGACTTCGTAAAAT 58.760 43.478 0.00 0.00 46.20 1.82
2285 2370 5.401550 CACCTACCGTGACTTCGTAAAATA 58.598 41.667 0.00 0.00 46.20 1.40
2286 2371 6.038356 CACCTACCGTGACTTCGTAAAATAT 58.962 40.000 0.00 0.00 46.20 1.28
2287 2372 6.532657 CACCTACCGTGACTTCGTAAAATATT 59.467 38.462 0.00 0.00 46.20 1.28
2288 2373 7.701924 CACCTACCGTGACTTCGTAAAATATTA 59.298 37.037 0.00 0.00 46.20 0.98
2289 2374 8.250332 ACCTACCGTGACTTCGTAAAATATTAA 58.750 33.333 0.00 0.00 0.00 1.40
2290 2375 8.749499 CCTACCGTGACTTCGTAAAATATTAAG 58.251 37.037 0.00 0.00 0.00 1.85
2291 2376 9.507280 CTACCGTGACTTCGTAAAATATTAAGA 57.493 33.333 2.62 0.00 0.00 2.10
2292 2377 8.937634 ACCGTGACTTCGTAAAATATTAAGAT 57.062 30.769 2.62 0.00 31.11 2.40
2293 2378 8.814235 ACCGTGACTTCGTAAAATATTAAGATG 58.186 33.333 2.62 0.00 33.72 2.90
2294 2379 9.027129 CCGTGACTTCGTAAAATATTAAGATGA 57.973 33.333 2.62 0.00 32.66 2.92
2302 2387 8.600625 TCGTAAAATATTAAGATGATATGCCGC 58.399 33.333 0.00 0.00 0.00 6.53
2303 2388 8.604035 CGTAAAATATTAAGATGATATGCCGCT 58.396 33.333 0.00 0.00 0.00 5.52
2306 2391 8.565896 AAATATTAAGATGATATGCCGCTTCA 57.434 30.769 0.00 0.00 0.00 3.02
2307 2392 7.783090 ATATTAAGATGATATGCCGCTTCAG 57.217 36.000 0.00 0.00 0.00 3.02
2308 2393 3.482156 AAGATGATATGCCGCTTCAGT 57.518 42.857 0.00 0.00 0.00 3.41
2309 2394 3.037431 AGATGATATGCCGCTTCAGTC 57.963 47.619 0.00 0.00 0.00 3.51
2310 2395 2.632028 AGATGATATGCCGCTTCAGTCT 59.368 45.455 0.00 0.00 0.00 3.24
2311 2396 2.515926 TGATATGCCGCTTCAGTCTC 57.484 50.000 0.00 0.00 0.00 3.36
2312 2397 2.034878 TGATATGCCGCTTCAGTCTCT 58.965 47.619 0.00 0.00 0.00 3.10
2313 2398 2.035193 TGATATGCCGCTTCAGTCTCTC 59.965 50.000 0.00 0.00 0.00 3.20
2314 2399 1.474330 TATGCCGCTTCAGTCTCTCA 58.526 50.000 0.00 0.00 0.00 3.27
2315 2400 0.175302 ATGCCGCTTCAGTCTCTCAG 59.825 55.000 0.00 0.00 0.00 3.35
2316 2401 0.895559 TGCCGCTTCAGTCTCTCAGA 60.896 55.000 0.00 0.00 0.00 3.27
2317 2402 0.179140 GCCGCTTCAGTCTCTCAGAG 60.179 60.000 0.00 0.00 0.00 3.35
2318 2403 0.455410 CCGCTTCAGTCTCTCAGAGG 59.545 60.000 0.57 0.00 0.00 3.69
2319 2404 1.173043 CGCTTCAGTCTCTCAGAGGT 58.827 55.000 0.57 0.00 0.00 3.85
2320 2405 1.135431 CGCTTCAGTCTCTCAGAGGTG 60.135 57.143 0.57 0.02 0.00 4.00
2321 2406 1.404047 GCTTCAGTCTCTCAGAGGTGC 60.404 57.143 0.57 0.00 0.00 5.01
2322 2407 2.170166 CTTCAGTCTCTCAGAGGTGCT 58.830 52.381 0.57 0.00 0.00 4.40
2323 2408 1.832883 TCAGTCTCTCAGAGGTGCTC 58.167 55.000 0.57 0.00 0.00 4.26
2324 2409 0.817013 CAGTCTCTCAGAGGTGCTCC 59.183 60.000 0.57 0.00 0.00 4.70
2326 2411 1.919654 AGTCTCTCAGAGGTGCTCCTA 59.080 52.381 7.45 0.00 45.24 2.94
2327 2412 2.092429 AGTCTCTCAGAGGTGCTCCTAG 60.092 54.545 7.45 1.87 45.24 3.02
2328 2413 1.214175 TCTCTCAGAGGTGCTCCTAGG 59.786 57.143 7.45 0.82 45.24 3.02
2329 2414 0.260230 TCTCAGAGGTGCTCCTAGGG 59.740 60.000 9.46 3.79 45.24 3.53
2330 2415 0.758685 CTCAGAGGTGCTCCTAGGGG 60.759 65.000 9.46 6.61 45.24 4.79
2331 2416 1.002274 CAGAGGTGCTCCTAGGGGT 59.998 63.158 11.24 0.00 45.24 4.95
2332 2417 1.002274 AGAGGTGCTCCTAGGGGTG 59.998 63.158 11.24 1.72 45.24 4.61
2333 2418 1.001760 GAGGTGCTCCTAGGGGTGA 59.998 63.158 11.24 0.00 45.24 4.02
2334 2419 1.002274 AGGTGCTCCTAGGGGTGAG 59.998 63.158 11.24 0.05 43.12 3.51
2335 2420 1.306226 GGTGCTCCTAGGGGTGAGT 60.306 63.158 11.24 0.00 0.00 3.41
2336 2421 1.617947 GGTGCTCCTAGGGGTGAGTG 61.618 65.000 11.24 0.00 0.00 3.51
2337 2422 0.905337 GTGCTCCTAGGGGTGAGTGT 60.905 60.000 11.24 0.00 0.00 3.55
2338 2423 0.708209 TGCTCCTAGGGGTGAGTGTA 59.292 55.000 11.24 0.00 0.00 2.90
2339 2424 1.291033 TGCTCCTAGGGGTGAGTGTAT 59.709 52.381 11.24 0.00 0.00 2.29
2340 2425 1.689273 GCTCCTAGGGGTGAGTGTATG 59.311 57.143 11.24 0.00 0.00 2.39
2341 2426 1.689273 CTCCTAGGGGTGAGTGTATGC 59.311 57.143 9.46 0.00 0.00 3.14
2342 2427 0.389391 CCTAGGGGTGAGTGTATGCG 59.611 60.000 0.00 0.00 0.00 4.73
2343 2428 0.249489 CTAGGGGTGAGTGTATGCGC 60.249 60.000 0.00 0.00 0.00 6.09
2344 2429 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
2345 2430 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
2346 2431 1.740296 GGGTGAGTGTATGCGCGTT 60.740 57.895 7.78 0.00 0.00 4.84
2347 2432 1.296056 GGGTGAGTGTATGCGCGTTT 61.296 55.000 7.78 0.00 0.00 3.60
2348 2433 1.352114 GGTGAGTGTATGCGCGTTTA 58.648 50.000 7.78 0.00 0.00 2.01
2349 2434 1.931172 GGTGAGTGTATGCGCGTTTAT 59.069 47.619 7.78 2.74 0.00 1.40
2350 2435 3.117794 GGTGAGTGTATGCGCGTTTATA 58.882 45.455 7.78 1.67 0.00 0.98
2351 2436 3.739300 GGTGAGTGTATGCGCGTTTATAT 59.261 43.478 7.78 0.00 0.00 0.86
2352 2437 4.376008 GGTGAGTGTATGCGCGTTTATATG 60.376 45.833 7.78 0.00 0.00 1.78
2353 2438 4.443063 GTGAGTGTATGCGCGTTTATATGA 59.557 41.667 7.78 0.00 0.00 2.15
2354 2439 4.679654 TGAGTGTATGCGCGTTTATATGAG 59.320 41.667 7.78 0.00 0.00 2.90
2355 2440 3.428870 AGTGTATGCGCGTTTATATGAGC 59.571 43.478 7.78 0.00 36.72 4.26
2360 2445 1.924408 CGCGTTTATATGAGCGCTTG 58.076 50.000 22.51 7.90 46.56 4.01
2361 2446 1.663494 GCGTTTATATGAGCGCTTGC 58.337 50.000 19.08 0.00 45.48 4.01
2362 2447 1.924408 CGTTTATATGAGCGCTTGCG 58.076 50.000 13.26 10.90 45.69 4.85
2363 2448 1.257936 CGTTTATATGAGCGCTTGCGT 59.742 47.619 13.26 3.24 45.69 5.24
2364 2449 2.656632 CGTTTATATGAGCGCTTGCGTC 60.657 50.000 13.26 12.36 45.69 5.19
2365 2450 2.509052 TTATATGAGCGCTTGCGTCT 57.491 45.000 13.26 13.17 45.69 4.18
2366 2451 1.770957 TATATGAGCGCTTGCGTCTG 58.229 50.000 13.26 0.00 45.69 3.51
2367 2452 0.179100 ATATGAGCGCTTGCGTCTGT 60.179 50.000 13.26 7.66 45.69 3.41
2368 2453 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
2369 2454 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
2370 2455 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
2371 2456 0.179171 GAGCGCTTGCGTCTGTACTA 60.179 55.000 13.26 0.00 45.69 1.82
2372 2457 0.456221 AGCGCTTGCGTCTGTACTAT 59.544 50.000 16.38 0.00 45.69 2.12
2373 2458 0.572590 GCGCTTGCGTCTGTACTATG 59.427 55.000 16.38 0.00 0.00 2.23
2374 2459 1.909376 CGCTTGCGTCTGTACTATGT 58.091 50.000 6.86 0.00 0.00 2.29
2375 2460 2.259618 CGCTTGCGTCTGTACTATGTT 58.740 47.619 6.86 0.00 0.00 2.71
2376 2461 3.431856 CGCTTGCGTCTGTACTATGTTA 58.568 45.455 6.86 0.00 0.00 2.41
2377 2462 3.855379 CGCTTGCGTCTGTACTATGTTAA 59.145 43.478 6.86 0.00 0.00 2.01
2378 2463 4.325204 CGCTTGCGTCTGTACTATGTTAAA 59.675 41.667 6.86 0.00 0.00 1.52
2379 2464 5.164031 CGCTTGCGTCTGTACTATGTTAAAA 60.164 40.000 6.86 0.00 0.00 1.52
2380 2465 6.595794 GCTTGCGTCTGTACTATGTTAAAAA 58.404 36.000 0.00 0.00 0.00 1.94
2403 2488 7.857734 AAAAGGGTTTGGTTGTAGAAAATTG 57.142 32.000 0.00 0.00 0.00 2.32
2425 2510 9.581099 AATTGTAATTATAAACTTTGGGAAGCG 57.419 29.630 0.00 0.00 36.29 4.68
2426 2511 6.557110 TGTAATTATAAACTTTGGGAAGCGC 58.443 36.000 0.00 0.00 36.29 5.92
2427 2512 5.652994 AATTATAAACTTTGGGAAGCGCA 57.347 34.783 11.47 0.00 36.29 6.09
2429 2514 3.508744 ATAAACTTTGGGAAGCGCATG 57.491 42.857 11.47 0.00 36.29 4.06
2430 2515 0.318120 AAACTTTGGGAAGCGCATGG 59.682 50.000 11.47 0.00 36.29 3.66
2432 2517 0.962356 ACTTTGGGAAGCGCATGGAG 60.962 55.000 11.47 0.08 36.29 3.86
2437 2522 2.115291 GGAAGCGCATGGAGGAACC 61.115 63.158 11.47 0.00 39.54 3.62
2438 2523 2.044946 AAGCGCATGGAGGAACCC 60.045 61.111 11.47 0.00 38.00 4.11
2439 2524 3.976701 AAGCGCATGGAGGAACCCG 62.977 63.158 11.47 0.00 38.00 5.28
2441 2526 4.856801 CGCATGGAGGAACCCGGG 62.857 72.222 22.25 22.25 38.00 5.73
2442 2527 3.728373 GCATGGAGGAACCCGGGT 61.728 66.667 24.16 24.16 38.00 5.28
2444 2529 1.525442 CATGGAGGAACCCGGGTAC 59.475 63.158 30.52 23.27 38.00 3.34
2446 2531 0.327191 ATGGAGGAACCCGGGTACAT 60.327 55.000 30.52 21.91 38.00 2.29
2447 2532 0.339162 TGGAGGAACCCGGGTACATA 59.661 55.000 30.52 8.94 38.00 2.29
2448 2533 1.061967 TGGAGGAACCCGGGTACATAT 60.062 52.381 30.52 11.47 38.00 1.78
2449 2534 1.346722 GGAGGAACCCGGGTACATATG 59.653 57.143 30.52 0.00 0.00 1.78
2451 2536 2.701951 GAGGAACCCGGGTACATATGAA 59.298 50.000 30.52 0.00 0.00 2.57
2452 2537 2.436911 AGGAACCCGGGTACATATGAAC 59.563 50.000 30.52 9.27 0.00 3.18
2453 2538 2.486013 GGAACCCGGGTACATATGAACC 60.486 54.545 30.52 14.59 34.85 3.62
2463 2548 6.827586 GGTACATATGAACCCACTTTGAAA 57.172 37.500 10.38 0.00 0.00 2.69
2466 2551 6.723298 ACATATGAACCCACTTTGAAAACA 57.277 33.333 10.38 0.00 0.00 2.83
2467 2552 7.301868 ACATATGAACCCACTTTGAAAACAT 57.698 32.000 10.38 0.00 0.00 2.71
2470 2555 9.874205 CATATGAACCCACTTTGAAAACATATT 57.126 29.630 0.00 0.00 0.00 1.28
2472 2557 8.831715 ATGAACCCACTTTGAAAACATATTTC 57.168 30.769 0.00 0.00 0.00 2.17
2473 2558 8.017418 TGAACCCACTTTGAAAACATATTTCT 57.983 30.769 2.98 0.00 0.00 2.52
2474 2559 9.137459 TGAACCCACTTTGAAAACATATTTCTA 57.863 29.630 2.98 0.00 0.00 2.10
2506 2591 3.806625 AATCCGAAAAAGATGGCATGG 57.193 42.857 3.81 0.00 0.00 3.66
2507 2592 1.473258 TCCGAAAAAGATGGCATGGG 58.527 50.000 3.81 0.00 0.00 4.00
2508 2593 1.185315 CCGAAAAAGATGGCATGGGT 58.815 50.000 3.81 0.00 0.00 4.51
2509 2594 2.025793 TCCGAAAAAGATGGCATGGGTA 60.026 45.455 3.81 0.00 0.00 3.69
2510 2595 2.099098 CCGAAAAAGATGGCATGGGTAC 59.901 50.000 3.81 0.00 0.00 3.34
2511 2596 2.223249 CGAAAAAGATGGCATGGGTACG 60.223 50.000 3.81 0.00 0.00 3.67
2512 2597 2.507407 AAAAGATGGCATGGGTACGT 57.493 45.000 3.81 0.00 0.00 3.57
2513 2598 3.637911 AAAAGATGGCATGGGTACGTA 57.362 42.857 3.81 0.00 0.00 3.57
2514 2599 3.857157 AAAGATGGCATGGGTACGTAT 57.143 42.857 3.81 0.00 0.00 3.06
2515 2600 3.857157 AAGATGGCATGGGTACGTATT 57.143 42.857 3.81 0.00 0.00 1.89
2516 2601 3.402628 AGATGGCATGGGTACGTATTC 57.597 47.619 3.81 0.00 0.00 1.75
2517 2602 2.703536 AGATGGCATGGGTACGTATTCA 59.296 45.455 3.81 0.61 0.00 2.57
2518 2603 3.327757 AGATGGCATGGGTACGTATTCAT 59.672 43.478 3.81 3.19 0.00 2.57
2519 2604 2.844946 TGGCATGGGTACGTATTCATG 58.155 47.619 24.45 24.45 39.74 3.07
2520 2605 2.171659 TGGCATGGGTACGTATTCATGT 59.828 45.455 26.82 5.97 39.17 3.21
2521 2606 3.211045 GGCATGGGTACGTATTCATGTT 58.789 45.455 26.82 5.45 39.17 2.71
2522 2607 3.250040 GGCATGGGTACGTATTCATGTTC 59.750 47.826 26.82 20.13 39.17 3.18
2523 2608 4.127171 GCATGGGTACGTATTCATGTTCT 58.873 43.478 26.82 4.93 39.17 3.01
2524 2609 5.294356 GCATGGGTACGTATTCATGTTCTA 58.706 41.667 26.82 0.00 39.17 2.10
2525 2610 5.932303 GCATGGGTACGTATTCATGTTCTAT 59.068 40.000 26.82 3.90 39.17 1.98
2526 2611 6.128553 GCATGGGTACGTATTCATGTTCTATG 60.129 42.308 26.82 12.98 39.17 2.23
2527 2612 6.474140 TGGGTACGTATTCATGTTCTATGT 57.526 37.500 0.00 0.00 0.00 2.29
2528 2613 6.277605 TGGGTACGTATTCATGTTCTATGTG 58.722 40.000 0.00 0.00 0.00 3.21
2529 2614 5.176958 GGGTACGTATTCATGTTCTATGTGC 59.823 44.000 0.00 0.00 0.00 4.57
2530 2615 5.107989 GGTACGTATTCATGTTCTATGTGCG 60.108 44.000 0.00 0.00 0.00 5.34
2531 2616 4.430007 ACGTATTCATGTTCTATGTGCGT 58.570 39.130 0.00 0.00 0.00 5.24
2532 2617 4.267690 ACGTATTCATGTTCTATGTGCGTG 59.732 41.667 0.00 0.00 0.00 5.34
2533 2618 3.680642 ATTCATGTTCTATGTGCGTGC 57.319 42.857 0.00 0.00 0.00 5.34
2534 2619 2.091852 TCATGTTCTATGTGCGTGCA 57.908 45.000 0.00 0.00 0.00 4.57
2535 2620 2.631267 TCATGTTCTATGTGCGTGCAT 58.369 42.857 0.00 0.12 0.00 3.96
2536 2621 3.791245 TCATGTTCTATGTGCGTGCATA 58.209 40.909 0.00 0.00 0.00 3.14
2537 2622 4.187694 TCATGTTCTATGTGCGTGCATAA 58.812 39.130 0.00 0.00 31.76 1.90
2538 2623 4.633565 TCATGTTCTATGTGCGTGCATAAA 59.366 37.500 0.00 0.00 31.76 1.40
2539 2624 4.598406 TGTTCTATGTGCGTGCATAAAG 57.402 40.909 0.00 0.00 31.76 1.85
2540 2625 4.000325 TGTTCTATGTGCGTGCATAAAGT 59.000 39.130 0.00 0.00 31.76 2.66
2541 2626 4.454161 TGTTCTATGTGCGTGCATAAAGTT 59.546 37.500 0.00 0.00 31.76 2.66
2542 2627 5.049060 TGTTCTATGTGCGTGCATAAAGTTT 60.049 36.000 0.00 0.00 31.76 2.66
2543 2628 5.216566 TCTATGTGCGTGCATAAAGTTTC 57.783 39.130 0.00 0.00 31.76 2.78
2544 2629 3.913548 ATGTGCGTGCATAAAGTTTCA 57.086 38.095 0.00 0.00 0.00 2.69
2545 2630 2.993545 TGTGCGTGCATAAAGTTTCAC 58.006 42.857 0.00 0.00 0.00 3.18
2615 2700 5.532025 GTGAAACGCTATTTAGAAGCACT 57.468 39.130 0.00 0.00 40.08 4.40
2616 2701 5.316770 GTGAAACGCTATTTAGAAGCACTG 58.683 41.667 0.00 0.00 40.08 3.66
2617 2702 5.120208 GTGAAACGCTATTTAGAAGCACTGA 59.880 40.000 0.00 0.00 40.08 3.41
2618 2703 5.699001 TGAAACGCTATTTAGAAGCACTGAA 59.301 36.000 0.00 0.00 40.08 3.02
2619 2704 6.203915 TGAAACGCTATTTAGAAGCACTGAAA 59.796 34.615 0.00 0.00 40.08 2.69
2620 2705 6.743575 AACGCTATTTAGAAGCACTGAAAT 57.256 33.333 0.00 0.00 40.08 2.17
2621 2706 6.743575 ACGCTATTTAGAAGCACTGAAATT 57.256 33.333 0.00 0.00 40.08 1.82
2622 2707 7.145932 ACGCTATTTAGAAGCACTGAAATTT 57.854 32.000 0.00 0.00 40.08 1.82
2623 2708 7.023575 ACGCTATTTAGAAGCACTGAAATTTG 58.976 34.615 0.00 0.00 40.08 2.32
2624 2709 7.023575 CGCTATTTAGAAGCACTGAAATTTGT 58.976 34.615 0.00 0.00 40.08 2.83
2625 2710 7.217070 CGCTATTTAGAAGCACTGAAATTTGTC 59.783 37.037 0.00 0.00 40.08 3.18
2626 2711 8.239998 GCTATTTAGAAGCACTGAAATTTGTCT 58.760 33.333 0.00 0.00 39.83 3.41
2629 2714 9.822185 ATTTAGAAGCACTGAAATTTGTCTTTT 57.178 25.926 0.00 0.00 0.00 2.27
2630 2715 9.651913 TTTAGAAGCACTGAAATTTGTCTTTTT 57.348 25.926 0.00 0.00 0.00 1.94
2649 2734 5.924475 TTTTTGCGGAGACAAAACAAAAA 57.076 30.435 7.61 7.61 46.28 1.94
2650 2735 5.523013 TTTTGCGGAGACAAAACAAAAAG 57.477 34.783 0.00 0.00 42.88 2.27
2651 2736 4.442375 TTGCGGAGACAAAACAAAAAGA 57.558 36.364 0.00 0.00 0.00 2.52
2652 2737 3.765026 TGCGGAGACAAAACAAAAAGAC 58.235 40.909 0.00 0.00 0.00 3.01
2653 2738 3.191581 TGCGGAGACAAAACAAAAAGACA 59.808 39.130 0.00 0.00 0.00 3.41
2654 2739 4.142271 TGCGGAGACAAAACAAAAAGACAT 60.142 37.500 0.00 0.00 0.00 3.06
2655 2740 4.803613 GCGGAGACAAAACAAAAAGACATT 59.196 37.500 0.00 0.00 0.00 2.71
2656 2741 5.290885 GCGGAGACAAAACAAAAAGACATTT 59.709 36.000 0.00 0.00 0.00 2.32
2657 2742 6.183360 GCGGAGACAAAACAAAAAGACATTTT 60.183 34.615 0.00 0.00 41.93 1.82
2658 2743 7.623297 GCGGAGACAAAACAAAAAGACATTTTT 60.623 33.333 0.00 0.00 46.97 1.94
2659 2744 7.897800 CGGAGACAAAACAAAAAGACATTTTTC 59.102 33.333 0.00 0.00 44.80 2.29
2660 2745 8.716909 GGAGACAAAACAAAAAGACATTTTTCA 58.283 29.630 0.00 0.00 44.80 2.69
2661 2746 9.528847 GAGACAAAACAAAAAGACATTTTTCAC 57.471 29.630 0.00 0.00 44.80 3.18
2662 2747 9.050601 AGACAAAACAAAAAGACATTTTTCACA 57.949 25.926 0.00 0.00 44.80 3.58
2663 2748 9.657121 GACAAAACAAAAAGACATTTTTCACAA 57.343 25.926 0.00 0.00 44.80 3.33
2671 2756 8.726650 AAAAGACATTTTTCACAAAACTTTGC 57.273 26.923 2.07 0.00 37.20 3.68
2672 2757 6.093532 AGACATTTTTCACAAAACTTTGCG 57.906 33.333 2.07 0.00 41.79 4.85
2673 2758 4.646960 ACATTTTTCACAAAACTTTGCGC 58.353 34.783 0.00 0.00 41.79 6.09
2674 2759 3.731274 TTTTTCACAAAACTTTGCGCC 57.269 38.095 4.18 0.00 41.79 6.53
2675 2760 1.272781 TTTCACAAAACTTTGCGCCG 58.727 45.000 4.18 0.00 41.79 6.46
2676 2761 0.171455 TTCACAAAACTTTGCGCCGT 59.829 45.000 4.18 0.00 41.79 5.68
2677 2762 0.524392 TCACAAAACTTTGCGCCGTG 60.524 50.000 4.18 0.00 41.79 4.94
2678 2763 1.876263 ACAAAACTTTGCGCCGTGC 60.876 52.632 4.18 0.00 41.79 5.34
2695 2780 2.927429 GTGCGCACACATTTATGAACA 58.073 42.857 34.52 0.00 46.61 3.18
2696 2781 3.500982 GTGCGCACACATTTATGAACAT 58.499 40.909 34.52 0.00 46.61 2.71
2697 2782 3.301379 GTGCGCACACATTTATGAACATG 59.699 43.478 34.52 0.00 46.61 3.21
2698 2783 3.057666 TGCGCACACATTTATGAACATGT 60.058 39.130 5.66 0.00 33.72 3.21
2699 2784 4.154918 TGCGCACACATTTATGAACATGTA 59.845 37.500 5.66 0.00 32.16 2.29
2700 2785 5.163673 TGCGCACACATTTATGAACATGTAT 60.164 36.000 5.66 0.00 32.16 2.29
2701 2786 5.171874 GCGCACACATTTATGAACATGTATG 59.828 40.000 0.30 0.04 32.02 2.39
2702 2787 5.171874 CGCACACATTTATGAACATGTATGC 59.828 40.000 0.00 5.63 46.08 3.14
2719 2804 8.481974 CATGTATGCATGGAATTTTCTTTTGA 57.518 30.769 15.36 0.00 46.47 2.69
2720 2805 9.104965 CATGTATGCATGGAATTTTCTTTTGAT 57.895 29.630 15.36 0.00 46.47 2.57
2721 2806 9.675464 ATGTATGCATGGAATTTTCTTTTGATT 57.325 25.926 10.16 0.00 33.37 2.57
2722 2807 9.504708 TGTATGCATGGAATTTTCTTTTGATTT 57.495 25.926 10.16 0.00 0.00 2.17
2775 2860 4.751767 TTTTTGAAAAGTGGGTGCAGAT 57.248 36.364 0.00 0.00 0.00 2.90
2776 2861 3.731652 TTTGAAAAGTGGGTGCAGATG 57.268 42.857 0.00 0.00 0.00 2.90
2777 2862 0.961019 TGAAAAGTGGGTGCAGATGC 59.039 50.000 0.00 0.00 42.50 3.91
2778 2863 0.244721 GAAAAGTGGGTGCAGATGCC 59.755 55.000 1.72 0.00 41.18 4.40
2779 2864 1.187567 AAAAGTGGGTGCAGATGCCC 61.188 55.000 3.10 3.10 45.04 5.36
2780 2865 3.590466 AAGTGGGTGCAGATGCCCC 62.590 63.158 18.99 18.99 45.76 5.80
2781 2866 4.052518 GTGGGTGCAGATGCCCCT 62.053 66.667 23.42 0.00 45.75 4.79
2782 2867 4.051167 TGGGTGCAGATGCCCCTG 62.051 66.667 23.42 0.00 45.75 4.45
2783 2868 4.828296 GGGTGCAGATGCCCCTGG 62.828 72.222 18.69 0.00 43.68 4.45
2784 2869 4.828296 GGTGCAGATGCCCCTGGG 62.828 72.222 5.50 5.50 41.18 4.45
2785 2870 4.052518 GTGCAGATGCCCCTGGGT 62.053 66.667 12.71 0.00 41.18 4.51
2786 2871 3.267233 TGCAGATGCCCCTGGGTT 61.267 61.111 12.71 0.00 41.18 4.11
2787 2872 2.440980 GCAGATGCCCCTGGGTTC 60.441 66.667 12.71 5.75 37.65 3.62
2788 2873 3.089838 CAGATGCCCCTGGGTTCA 58.910 61.111 12.71 9.64 37.65 3.18
2789 2874 1.077212 CAGATGCCCCTGGGTTCAG 60.077 63.158 12.71 0.00 40.59 3.02
2790 2875 1.229951 AGATGCCCCTGGGTTCAGA 60.230 57.895 12.71 0.00 43.49 3.27
2791 2876 0.625683 AGATGCCCCTGGGTTCAGAT 60.626 55.000 12.71 0.00 43.49 2.90
2792 2877 0.179006 GATGCCCCTGGGTTCAGATC 60.179 60.000 12.71 1.50 43.49 2.75
2793 2878 1.987807 ATGCCCCTGGGTTCAGATCG 61.988 60.000 12.71 0.00 43.49 3.69
2794 2879 2.670148 GCCCCTGGGTTCAGATCGT 61.670 63.158 12.71 0.00 43.49 3.73
2795 2880 1.991230 CCCCTGGGTTCAGATCGTT 59.009 57.895 12.71 0.00 43.49 3.85
2796 2881 0.107654 CCCCTGGGTTCAGATCGTTC 60.108 60.000 12.71 0.00 43.49 3.95
2797 2882 0.107654 CCCTGGGTTCAGATCGTTCC 60.108 60.000 3.97 0.00 43.49 3.62
2798 2883 0.107654 CCTGGGTTCAGATCGTTCCC 60.108 60.000 10.06 10.06 43.49 3.97
2799 2884 0.613260 CTGGGTTCAGATCGTTCCCA 59.387 55.000 16.03 16.03 44.76 4.37
2800 2885 0.323629 TGGGTTCAGATCGTTCCCAC 59.676 55.000 13.97 0.00 42.52 4.61
2801 2886 0.613777 GGGTTCAGATCGTTCCCACT 59.386 55.000 11.48 0.00 38.15 4.00
2802 2887 1.405661 GGGTTCAGATCGTTCCCACTC 60.406 57.143 11.48 0.00 38.15 3.51
2859 2944 5.630415 ATCAACCCTCGATCCTATTGAAA 57.370 39.130 0.00 0.00 30.46 2.69
2860 2945 5.630415 TCAACCCTCGATCCTATTGAAAT 57.370 39.130 0.00 0.00 0.00 2.17
2955 3044 8.869897 GCATATTCATAGATGATGCAAATTTGG 58.130 33.333 19.47 2.11 39.12 3.28
3050 3139 1.517257 CGACAGCCAAGCGACTAGG 60.517 63.158 0.00 0.00 0.00 3.02
3052 3141 2.187946 CAGCCAAGCGACTAGGGG 59.812 66.667 0.00 0.00 0.00 4.79
3061 3150 2.043248 GACTAGGGGCGGAGGTCA 60.043 66.667 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.681897 GTGCACTCTTTAGACCACATCAG 59.318 47.826 10.32 0.00 31.85 2.90
62 63 2.355818 GGACCGCAATAGGAAGAAAGGT 60.356 50.000 0.00 0.00 34.73 3.50
70 71 1.223487 GCCTTGGACCGCAATAGGA 59.777 57.895 0.00 0.00 34.73 2.94
201 202 6.890663 TTTCTTTCACAACTTCATTTGCTG 57.109 33.333 0.00 0.00 0.00 4.41
275 276 2.357034 TTTCTCAGCACGACCGCC 60.357 61.111 0.00 0.00 0.00 6.13
288 289 1.144057 CACTATCCGGCCGCTTTCT 59.856 57.895 22.85 3.88 0.00 2.52
461 465 1.288752 CGAAAAGCATTTGGCCGGT 59.711 52.632 1.90 0.00 46.50 5.28
638 663 1.535687 ACGTACCCTTGTCCTGCCT 60.536 57.895 0.00 0.00 0.00 4.75
709 735 2.950309 TCCGTTTTTGACCCATTTTCGA 59.050 40.909 0.00 0.00 0.00 3.71
711 737 4.048241 TGTCCGTTTTTGACCCATTTTC 57.952 40.909 0.00 0.00 31.60 2.29
758 785 5.505181 AAATAGACCTCTCAATGTGTGGT 57.495 39.130 8.55 8.55 0.00 4.16
763 791 5.187967 ACGGAGAAAATAGACCTCTCAATGT 59.812 40.000 0.00 0.00 37.85 2.71
769 797 5.105023 GGGTAAACGGAGAAAATAGACCTCT 60.105 44.000 0.00 0.00 0.00 3.69
794 822 1.003769 GTCCGTCCACGTCCGTTTAC 61.004 60.000 0.00 0.00 37.74 2.01
795 823 1.285641 GTCCGTCCACGTCCGTTTA 59.714 57.895 0.00 0.00 37.74 2.01
805 833 2.348104 CGACCATCCTGTCCGTCCA 61.348 63.158 0.00 0.00 31.35 4.02
851 881 2.350057 TTCGTGGGTGATCAAACCAA 57.650 45.000 18.95 5.26 42.47 3.67
889 919 0.179094 GCGGATTACGTGGTCATGGA 60.179 55.000 0.00 0.00 46.52 3.41
890 920 0.461163 TGCGGATTACGTGGTCATGG 60.461 55.000 0.00 0.00 46.52 3.66
892 922 0.535335 ACTGCGGATTACGTGGTCAT 59.465 50.000 0.00 0.00 46.52 3.06
893 923 0.319083 AACTGCGGATTACGTGGTCA 59.681 50.000 0.00 0.00 46.52 4.02
894 924 0.997196 GAACTGCGGATTACGTGGTC 59.003 55.000 0.00 0.00 46.52 4.02
895 925 0.390735 GGAACTGCGGATTACGTGGT 60.391 55.000 0.00 0.00 46.52 4.16
917 973 1.676967 GCAGTTGGGCTCCTCTTGG 60.677 63.158 0.00 0.00 0.00 3.61
1010 1068 2.586079 CCGGTCTGTATGGCGCTG 60.586 66.667 7.64 0.00 0.00 5.18
1154 1237 2.107292 CGGAGAAGAGCTCGACGGA 61.107 63.158 8.37 0.00 44.91 4.69
1614 1697 4.783621 GCCTCCGCAGCATCACCA 62.784 66.667 0.00 0.00 34.03 4.17
1719 1802 1.065053 TCTCTCTCCTCACCTTCTCCG 60.065 57.143 0.00 0.00 0.00 4.63
1754 1837 4.423209 GAGCCCCTCCACCTCCCT 62.423 72.222 0.00 0.00 0.00 4.20
1908 1991 8.970859 ATAAATCTCAGGTTCAACAATCTAGG 57.029 34.615 0.00 0.00 0.00 3.02
1973 2056 5.973651 ATGCACATAGACTGATTACGTTG 57.026 39.130 0.00 0.00 0.00 4.10
1974 2057 7.710907 ACAATATGCACATAGACTGATTACGTT 59.289 33.333 0.00 0.00 0.00 3.99
1975 2058 7.210174 ACAATATGCACATAGACTGATTACGT 58.790 34.615 0.00 0.00 0.00 3.57
1976 2059 7.643528 ACAATATGCACATAGACTGATTACG 57.356 36.000 0.00 0.00 0.00 3.18
1977 2060 9.476202 TGTACAATATGCACATAGACTGATTAC 57.524 33.333 0.00 0.00 0.00 1.89
2030 2115 6.824305 AACATTGCTTCTACTGTATTTGCT 57.176 33.333 0.00 0.00 0.00 3.91
2058 2143 9.448438 TGATACAAGTACAAACATTGCTTCTAT 57.552 29.630 0.00 0.00 0.00 1.98
2059 2144 8.840833 TGATACAAGTACAAACATTGCTTCTA 57.159 30.769 0.00 0.00 0.00 2.10
2060 2145 7.445402 ACTGATACAAGTACAAACATTGCTTCT 59.555 33.333 0.00 0.00 0.00 2.85
2061 2146 7.584987 ACTGATACAAGTACAAACATTGCTTC 58.415 34.615 0.00 0.00 0.00 3.86
2062 2147 7.445402 AGACTGATACAAGTACAAACATTGCTT 59.555 33.333 0.00 0.00 0.00 3.91
2063 2148 6.936900 AGACTGATACAAGTACAAACATTGCT 59.063 34.615 0.00 0.00 0.00 3.91
2064 2149 7.133891 AGACTGATACAAGTACAAACATTGC 57.866 36.000 0.00 0.00 0.00 3.56
2066 2151 8.883731 GCATAGACTGATACAAGTACAAACATT 58.116 33.333 0.00 0.00 0.00 2.71
2067 2152 7.495934 GGCATAGACTGATACAAGTACAAACAT 59.504 37.037 0.00 0.00 0.00 2.71
2068 2153 6.816640 GGCATAGACTGATACAAGTACAAACA 59.183 38.462 0.00 0.00 0.00 2.83
2069 2154 6.019801 CGGCATAGACTGATACAAGTACAAAC 60.020 42.308 0.00 0.00 0.00 2.93
2070 2155 6.040247 CGGCATAGACTGATACAAGTACAAA 58.960 40.000 0.00 0.00 0.00 2.83
2071 2156 5.588240 CGGCATAGACTGATACAAGTACAA 58.412 41.667 0.00 0.00 0.00 2.41
2072 2157 4.499188 GCGGCATAGACTGATACAAGTACA 60.499 45.833 0.00 0.00 0.00 2.90
2073 2158 3.982058 GCGGCATAGACTGATACAAGTAC 59.018 47.826 0.00 0.00 0.00 2.73
2074 2159 3.634910 TGCGGCATAGACTGATACAAGTA 59.365 43.478 0.00 0.00 0.00 2.24
2075 2160 2.430694 TGCGGCATAGACTGATACAAGT 59.569 45.455 0.00 0.00 0.00 3.16
2105 2190 2.183478 CCACATGTTGGTGTCAGCTA 57.817 50.000 0.00 0.00 41.10 3.32
2116 2201 3.306919 GCAAATCATCCCAACCACATGTT 60.307 43.478 0.00 0.00 37.80 2.71
2117 2202 2.234414 GCAAATCATCCCAACCACATGT 59.766 45.455 0.00 0.00 0.00 3.21
2118 2203 2.498481 AGCAAATCATCCCAACCACATG 59.502 45.455 0.00 0.00 0.00 3.21
2119 2204 2.498481 CAGCAAATCATCCCAACCACAT 59.502 45.455 0.00 0.00 0.00 3.21
2120 2205 1.894466 CAGCAAATCATCCCAACCACA 59.106 47.619 0.00 0.00 0.00 4.17
2121 2206 1.205417 CCAGCAAATCATCCCAACCAC 59.795 52.381 0.00 0.00 0.00 4.16
2122 2207 1.076841 TCCAGCAAATCATCCCAACCA 59.923 47.619 0.00 0.00 0.00 3.67
2123 2208 1.478105 GTCCAGCAAATCATCCCAACC 59.522 52.381 0.00 0.00 0.00 3.77
2124 2209 2.165030 CTGTCCAGCAAATCATCCCAAC 59.835 50.000 0.00 0.00 0.00 3.77
2125 2210 2.225091 ACTGTCCAGCAAATCATCCCAA 60.225 45.455 0.00 0.00 0.00 4.12
2126 2211 1.355381 ACTGTCCAGCAAATCATCCCA 59.645 47.619 0.00 0.00 0.00 4.37
2127 2212 1.747355 CACTGTCCAGCAAATCATCCC 59.253 52.381 0.00 0.00 0.00 3.85
2128 2213 1.747355 CCACTGTCCAGCAAATCATCC 59.253 52.381 0.00 0.00 0.00 3.51
2129 2214 2.440409 ACCACTGTCCAGCAAATCATC 58.560 47.619 0.00 0.00 0.00 2.92
2130 2215 2.592102 ACCACTGTCCAGCAAATCAT 57.408 45.000 0.00 0.00 0.00 2.45
2131 2216 3.609853 GATACCACTGTCCAGCAAATCA 58.390 45.455 0.00 0.00 0.00 2.57
2132 2217 2.945668 GGATACCACTGTCCAGCAAATC 59.054 50.000 0.00 0.00 34.57 2.17
2133 2218 3.004752 GGATACCACTGTCCAGCAAAT 57.995 47.619 0.00 0.00 34.57 2.32
2134 2219 2.489938 GGATACCACTGTCCAGCAAA 57.510 50.000 0.00 0.00 34.57 3.68
2148 2233 0.768221 TCCTGATGGGCTGGGGATAC 60.768 60.000 0.00 0.00 36.34 2.24
2149 2234 0.196888 ATCCTGATGGGCTGGGGATA 59.803 55.000 0.00 0.00 35.34 2.59
2150 2235 0.703758 AATCCTGATGGGCTGGGGAT 60.704 55.000 0.00 0.00 38.29 3.85
2151 2236 0.925720 AAATCCTGATGGGCTGGGGA 60.926 55.000 0.00 0.00 36.34 4.81
2152 2237 0.852842 TAAATCCTGATGGGCTGGGG 59.147 55.000 0.00 0.00 36.34 4.96
2153 2238 2.091665 ACTTAAATCCTGATGGGCTGGG 60.092 50.000 0.00 0.00 36.34 4.45
2154 2239 3.217626 GACTTAAATCCTGATGGGCTGG 58.782 50.000 0.00 0.00 36.97 4.85
2155 2240 3.217626 GGACTTAAATCCTGATGGGCTG 58.782 50.000 0.00 0.00 35.68 4.85
2156 2241 3.584733 GGACTTAAATCCTGATGGGCT 57.415 47.619 0.00 0.00 35.68 5.19
2165 2250 4.442706 TGCGAGAATCAGGACTTAAATCC 58.557 43.478 0.00 0.00 39.28 3.01
2166 2251 6.610741 AATGCGAGAATCAGGACTTAAATC 57.389 37.500 0.00 0.00 33.17 2.17
2167 2252 8.682936 ATAAATGCGAGAATCAGGACTTAAAT 57.317 30.769 0.00 0.00 33.17 1.40
2168 2253 8.506168 AATAAATGCGAGAATCAGGACTTAAA 57.494 30.769 0.00 0.00 33.17 1.52
2169 2254 7.987458 AGAATAAATGCGAGAATCAGGACTTAA 59.013 33.333 0.00 0.00 33.17 1.85
2170 2255 7.439356 CAGAATAAATGCGAGAATCAGGACTTA 59.561 37.037 0.00 0.00 33.17 2.24
2171 2256 6.259608 CAGAATAAATGCGAGAATCAGGACTT 59.740 38.462 0.00 0.00 33.17 3.01
2172 2257 5.757320 CAGAATAAATGCGAGAATCAGGACT 59.243 40.000 0.00 0.00 33.17 3.85
2173 2258 5.049818 CCAGAATAAATGCGAGAATCAGGAC 60.050 44.000 0.00 0.00 33.17 3.85
2174 2259 5.059161 CCAGAATAAATGCGAGAATCAGGA 58.941 41.667 0.00 0.00 33.17 3.86
2175 2260 5.059161 TCCAGAATAAATGCGAGAATCAGG 58.941 41.667 0.00 0.00 33.17 3.86
2176 2261 6.609237 TTCCAGAATAAATGCGAGAATCAG 57.391 37.500 0.00 0.00 33.17 2.90
2177 2262 7.572523 AATTCCAGAATAAATGCGAGAATCA 57.427 32.000 0.00 0.00 33.17 2.57
2192 2277 8.695456 GCCAGAAATCCTAAAATAATTCCAGAA 58.305 33.333 0.00 0.00 0.00 3.02
2193 2278 7.013274 CGCCAGAAATCCTAAAATAATTCCAGA 59.987 37.037 0.00 0.00 0.00 3.86
2194 2279 7.013274 TCGCCAGAAATCCTAAAATAATTCCAG 59.987 37.037 0.00 0.00 0.00 3.86
2195 2280 6.831353 TCGCCAGAAATCCTAAAATAATTCCA 59.169 34.615 0.00 0.00 0.00 3.53
2196 2281 7.272037 TCGCCAGAAATCCTAAAATAATTCC 57.728 36.000 0.00 0.00 0.00 3.01
2197 2282 9.827411 GTATCGCCAGAAATCCTAAAATAATTC 57.173 33.333 0.00 0.00 0.00 2.17
2198 2283 9.574516 AGTATCGCCAGAAATCCTAAAATAATT 57.425 29.630 0.00 0.00 0.00 1.40
2199 2284 9.220767 GAGTATCGCCAGAAATCCTAAAATAAT 57.779 33.333 0.00 0.00 0.00 1.28
2200 2285 8.429641 AGAGTATCGCCAGAAATCCTAAAATAA 58.570 33.333 0.00 0.00 42.67 1.40
2201 2286 7.963532 AGAGTATCGCCAGAAATCCTAAAATA 58.036 34.615 0.00 0.00 42.67 1.40
2202 2287 6.831976 AGAGTATCGCCAGAAATCCTAAAAT 58.168 36.000 0.00 0.00 42.67 1.82
2203 2288 6.235231 AGAGTATCGCCAGAAATCCTAAAA 57.765 37.500 0.00 0.00 42.67 1.52
2204 2289 5.871396 AGAGTATCGCCAGAAATCCTAAA 57.129 39.130 0.00 0.00 42.67 1.85
2205 2290 5.871396 AAGAGTATCGCCAGAAATCCTAA 57.129 39.130 0.00 0.00 42.67 2.69
2206 2291 5.362717 TGAAAGAGTATCGCCAGAAATCCTA 59.637 40.000 0.00 0.00 42.67 2.94
2207 2292 4.162320 TGAAAGAGTATCGCCAGAAATCCT 59.838 41.667 0.00 0.00 42.67 3.24
2208 2293 4.442706 TGAAAGAGTATCGCCAGAAATCC 58.557 43.478 0.00 0.00 42.67 3.01
2209 2294 5.006165 CACTGAAAGAGTATCGCCAGAAATC 59.994 44.000 0.00 0.00 42.67 2.17
2210 2295 4.872691 CACTGAAAGAGTATCGCCAGAAAT 59.127 41.667 0.00 0.00 42.67 2.17
2211 2296 4.245660 CACTGAAAGAGTATCGCCAGAAA 58.754 43.478 0.00 0.00 42.67 2.52
2212 2297 3.368427 CCACTGAAAGAGTATCGCCAGAA 60.368 47.826 0.00 0.00 42.67 3.02
2213 2298 2.166459 CCACTGAAAGAGTATCGCCAGA 59.834 50.000 0.00 0.00 42.67 3.86
2214 2299 2.544685 CCACTGAAAGAGTATCGCCAG 58.455 52.381 0.00 0.00 42.67 4.85
2215 2300 1.207089 CCCACTGAAAGAGTATCGCCA 59.793 52.381 0.00 0.00 42.67 5.69
2216 2301 1.480954 TCCCACTGAAAGAGTATCGCC 59.519 52.381 0.00 0.00 42.67 5.54
2217 2302 2.482142 CCTCCCACTGAAAGAGTATCGC 60.482 54.545 0.00 0.00 42.67 4.58
2218 2303 3.024547 TCCTCCCACTGAAAGAGTATCG 58.975 50.000 0.00 0.00 42.67 2.92
2219 2304 4.098807 GTCTCCTCCCACTGAAAGAGTATC 59.901 50.000 0.00 0.00 37.43 2.24
2220 2305 4.027437 GTCTCCTCCCACTGAAAGAGTAT 58.973 47.826 0.00 0.00 37.43 2.12
2221 2306 3.432378 GTCTCCTCCCACTGAAAGAGTA 58.568 50.000 0.00 0.00 37.43 2.59
2222 2307 2.252714 GTCTCCTCCCACTGAAAGAGT 58.747 52.381 0.00 0.00 37.43 3.24
2223 2308 1.203523 CGTCTCCTCCCACTGAAAGAG 59.796 57.143 0.00 0.00 37.43 2.85
2224 2309 1.257743 CGTCTCCTCCCACTGAAAGA 58.742 55.000 0.00 0.00 37.43 2.52
2225 2310 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
2226 2311 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
2227 2312 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
2228 2313 0.112606 AGAACGTCTCCTCCCACTGA 59.887 55.000 0.00 0.00 0.00 3.41
2229 2314 0.528470 GAGAACGTCTCCTCCCACTG 59.472 60.000 0.00 0.00 37.55 3.66
2230 2315 0.112606 TGAGAACGTCTCCTCCCACT 59.887 55.000 11.01 0.00 42.73 4.00
2231 2316 1.135333 GATGAGAACGTCTCCTCCCAC 59.865 57.143 11.01 1.20 42.73 4.61
2232 2317 1.006043 AGATGAGAACGTCTCCTCCCA 59.994 52.381 11.01 0.00 42.73 4.37
2233 2318 1.770294 AGATGAGAACGTCTCCTCCC 58.230 55.000 11.01 4.28 42.73 4.30
2234 2319 3.547746 AGTAGATGAGAACGTCTCCTCC 58.452 50.000 11.01 3.05 42.73 4.30
2235 2320 5.117584 TGTAGTAGATGAGAACGTCTCCTC 58.882 45.833 11.01 10.59 42.73 3.71
2236 2321 5.100344 TGTAGTAGATGAGAACGTCTCCT 57.900 43.478 11.01 3.44 42.73 3.69
2237 2322 5.220892 CCTTGTAGTAGATGAGAACGTCTCC 60.221 48.000 11.01 0.00 42.73 3.71
2238 2323 5.731126 GCCTTGTAGTAGATGAGAACGTCTC 60.731 48.000 7.74 7.74 43.65 3.36
2239 2324 4.096682 GCCTTGTAGTAGATGAGAACGTCT 59.903 45.833 0.00 0.00 43.69 4.18
2240 2325 4.142447 TGCCTTGTAGTAGATGAGAACGTC 60.142 45.833 0.00 0.00 0.00 4.34
2241 2326 3.762288 TGCCTTGTAGTAGATGAGAACGT 59.238 43.478 0.00 0.00 0.00 3.99
2242 2327 4.106197 GTGCCTTGTAGTAGATGAGAACG 58.894 47.826 0.00 0.00 0.00 3.95
2243 2328 4.160626 AGGTGCCTTGTAGTAGATGAGAAC 59.839 45.833 0.00 0.00 0.00 3.01
2244 2329 4.353777 AGGTGCCTTGTAGTAGATGAGAA 58.646 43.478 0.00 0.00 0.00 2.87
2245 2330 3.982516 AGGTGCCTTGTAGTAGATGAGA 58.017 45.455 0.00 0.00 0.00 3.27
2246 2331 4.038162 GGTAGGTGCCTTGTAGTAGATGAG 59.962 50.000 0.00 0.00 0.00 2.90
2247 2332 3.958798 GGTAGGTGCCTTGTAGTAGATGA 59.041 47.826 0.00 0.00 0.00 2.92
2248 2333 3.243434 CGGTAGGTGCCTTGTAGTAGATG 60.243 52.174 0.00 0.00 0.00 2.90
2249 2334 2.957006 CGGTAGGTGCCTTGTAGTAGAT 59.043 50.000 0.00 0.00 0.00 1.98
2250 2335 2.291153 ACGGTAGGTGCCTTGTAGTAGA 60.291 50.000 0.00 0.00 0.00 2.59
2251 2336 2.097825 ACGGTAGGTGCCTTGTAGTAG 58.902 52.381 0.00 0.00 0.00 2.57
2252 2337 1.820519 CACGGTAGGTGCCTTGTAGTA 59.179 52.381 0.00 0.00 40.33 1.82
2253 2338 0.606604 CACGGTAGGTGCCTTGTAGT 59.393 55.000 0.00 0.00 40.33 2.73
2254 2339 0.892755 TCACGGTAGGTGCCTTGTAG 59.107 55.000 0.00 0.00 46.56 2.74
2255 2340 0.604578 GTCACGGTAGGTGCCTTGTA 59.395 55.000 0.00 0.00 46.56 2.41
2256 2341 1.119574 AGTCACGGTAGGTGCCTTGT 61.120 55.000 0.00 0.00 46.56 3.16
2257 2342 0.034896 AAGTCACGGTAGGTGCCTTG 59.965 55.000 0.00 0.00 42.81 3.61
2258 2343 0.320697 GAAGTCACGGTAGGTGCCTT 59.679 55.000 0.00 0.00 46.75 4.35
2259 2344 1.874345 CGAAGTCACGGTAGGTGCCT 61.874 60.000 0.00 0.00 46.56 4.75
2260 2345 1.445582 CGAAGTCACGGTAGGTGCC 60.446 63.158 0.00 0.00 46.56 5.01
2261 2346 0.523072 TACGAAGTCACGGTAGGTGC 59.477 55.000 0.00 0.00 46.56 5.01
2263 2348 4.525912 ATTTTACGAAGTCACGGTAGGT 57.474 40.909 0.00 0.00 43.93 3.08
2264 2349 8.633075 TTAATATTTTACGAAGTCACGGTAGG 57.367 34.615 0.00 0.00 43.93 3.18
2265 2350 9.507280 TCTTAATATTTTACGAAGTCACGGTAG 57.493 33.333 0.00 0.00 43.93 3.18
2267 2352 8.814235 CATCTTAATATTTTACGAAGTCACGGT 58.186 33.333 0.00 0.00 43.93 4.83
2268 2353 9.027129 TCATCTTAATATTTTACGAAGTCACGG 57.973 33.333 0.00 0.00 43.93 4.94
2276 2361 8.600625 GCGGCATATCATCTTAATATTTTACGA 58.399 33.333 0.00 0.00 0.00 3.43
2277 2362 8.604035 AGCGGCATATCATCTTAATATTTTACG 58.396 33.333 1.45 0.00 0.00 3.18
2280 2365 9.013229 TGAAGCGGCATATCATCTTAATATTTT 57.987 29.630 1.45 0.00 0.00 1.82
2281 2366 8.565896 TGAAGCGGCATATCATCTTAATATTT 57.434 30.769 1.45 0.00 0.00 1.40
2282 2367 7.826252 ACTGAAGCGGCATATCATCTTAATATT 59.174 33.333 1.45 0.00 0.00 1.28
2283 2368 7.334090 ACTGAAGCGGCATATCATCTTAATAT 58.666 34.615 1.45 0.00 0.00 1.28
2284 2369 6.701340 ACTGAAGCGGCATATCATCTTAATA 58.299 36.000 1.45 0.00 0.00 0.98
2285 2370 5.555017 ACTGAAGCGGCATATCATCTTAAT 58.445 37.500 1.45 0.00 0.00 1.40
2286 2371 4.960938 ACTGAAGCGGCATATCATCTTAA 58.039 39.130 1.45 0.00 0.00 1.85
2287 2372 4.281941 AGACTGAAGCGGCATATCATCTTA 59.718 41.667 1.45 0.00 0.00 2.10
2288 2373 3.070734 AGACTGAAGCGGCATATCATCTT 59.929 43.478 1.45 0.00 0.00 2.40
2289 2374 2.632028 AGACTGAAGCGGCATATCATCT 59.368 45.455 1.45 6.26 0.00 2.90
2290 2375 2.992543 GAGACTGAAGCGGCATATCATC 59.007 50.000 1.45 4.33 0.00 2.92
2291 2376 2.632028 AGAGACTGAAGCGGCATATCAT 59.368 45.455 1.45 0.00 0.00 2.45
2292 2377 2.034878 AGAGACTGAAGCGGCATATCA 58.965 47.619 1.45 2.84 0.00 2.15
2293 2378 2.035193 TGAGAGACTGAAGCGGCATATC 59.965 50.000 1.45 0.00 0.00 1.63
2294 2379 2.034878 TGAGAGACTGAAGCGGCATAT 58.965 47.619 1.45 0.00 0.00 1.78
2295 2380 1.406898 CTGAGAGACTGAAGCGGCATA 59.593 52.381 1.45 0.00 0.00 3.14
2296 2381 0.175302 CTGAGAGACTGAAGCGGCAT 59.825 55.000 1.45 0.00 0.00 4.40
2297 2382 0.895559 TCTGAGAGACTGAAGCGGCA 60.896 55.000 1.45 0.00 0.00 5.69
2298 2383 0.179140 CTCTGAGAGACTGAAGCGGC 60.179 60.000 2.60 0.00 0.00 6.53
2299 2384 0.455410 CCTCTGAGAGACTGAAGCGG 59.545 60.000 11.82 0.00 0.00 5.52
2300 2385 1.135431 CACCTCTGAGAGACTGAAGCG 60.135 57.143 11.82 0.00 0.00 4.68
2301 2386 1.404047 GCACCTCTGAGAGACTGAAGC 60.404 57.143 11.82 1.88 0.00 3.86
2302 2387 2.164219 GAGCACCTCTGAGAGACTGAAG 59.836 54.545 11.82 0.00 0.00 3.02
2303 2388 2.166829 GAGCACCTCTGAGAGACTGAA 58.833 52.381 11.82 0.00 0.00 3.02
2304 2389 1.615651 GGAGCACCTCTGAGAGACTGA 60.616 57.143 11.82 0.00 0.00 3.41
2305 2390 0.817013 GGAGCACCTCTGAGAGACTG 59.183 60.000 11.82 6.88 0.00 3.51
2306 2391 0.704076 AGGAGCACCTCTGAGAGACT 59.296 55.000 11.82 5.18 44.13 3.24
2307 2392 2.297701 CTAGGAGCACCTCTGAGAGAC 58.702 57.143 11.82 0.00 46.43 3.36
2308 2393 1.214175 CCTAGGAGCACCTCTGAGAGA 59.786 57.143 11.82 0.00 46.43 3.10
2309 2394 1.691196 CCTAGGAGCACCTCTGAGAG 58.309 60.000 5.75 1.57 46.43 3.20
2310 2395 0.260230 CCCTAGGAGCACCTCTGAGA 59.740 60.000 11.48 0.00 46.43 3.27
2311 2396 0.758685 CCCCTAGGAGCACCTCTGAG 60.759 65.000 11.48 0.00 46.43 3.35
2312 2397 1.311403 CCCCTAGGAGCACCTCTGA 59.689 63.158 11.48 0.00 46.43 3.27
2313 2398 1.002274 ACCCCTAGGAGCACCTCTG 59.998 63.158 11.48 0.82 46.43 3.35
2314 2399 1.002274 CACCCCTAGGAGCACCTCT 59.998 63.158 11.48 0.00 46.43 3.69
2315 2400 1.001760 TCACCCCTAGGAGCACCTC 59.998 63.158 11.48 0.00 46.43 3.85
2317 2402 1.306226 ACTCACCCCTAGGAGCACC 60.306 63.158 11.48 0.00 36.73 5.01
2318 2403 0.905337 ACACTCACCCCTAGGAGCAC 60.905 60.000 11.48 0.00 36.73 4.40
2319 2404 0.708209 TACACTCACCCCTAGGAGCA 59.292 55.000 11.48 0.00 36.73 4.26
2320 2405 1.689273 CATACACTCACCCCTAGGAGC 59.311 57.143 11.48 0.00 36.73 4.70
2321 2406 1.689273 GCATACACTCACCCCTAGGAG 59.311 57.143 11.48 0.00 36.73 3.69
2322 2407 1.789523 GCATACACTCACCCCTAGGA 58.210 55.000 11.48 0.00 36.73 2.94
2323 2408 0.389391 CGCATACACTCACCCCTAGG 59.611 60.000 0.06 0.06 40.04 3.02
2324 2409 0.249489 GCGCATACACTCACCCCTAG 60.249 60.000 0.30 0.00 0.00 3.02
2325 2410 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
2326 2411 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
2327 2412 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
2328 2413 1.296056 AAACGCGCATACACTCACCC 61.296 55.000 5.73 0.00 0.00 4.61
2329 2414 1.352114 TAAACGCGCATACACTCACC 58.648 50.000 5.73 0.00 0.00 4.02
2330 2415 4.443063 TCATATAAACGCGCATACACTCAC 59.557 41.667 5.73 0.00 0.00 3.51
2331 2416 4.612943 TCATATAAACGCGCATACACTCA 58.387 39.130 5.73 0.00 0.00 3.41
2332 2417 4.433022 GCTCATATAAACGCGCATACACTC 60.433 45.833 5.73 0.00 0.00 3.51
2333 2418 3.428870 GCTCATATAAACGCGCATACACT 59.571 43.478 5.73 0.00 0.00 3.55
2334 2419 3.718036 CGCTCATATAAACGCGCATACAC 60.718 47.826 5.73 0.00 39.11 2.90
2335 2420 2.407026 CGCTCATATAAACGCGCATACA 59.593 45.455 5.73 0.00 39.11 2.29
2336 2421 3.008456 CGCTCATATAAACGCGCATAC 57.992 47.619 5.73 0.00 39.11 2.39
2343 2428 1.257936 ACGCAAGCGCTCATATAAACG 59.742 47.619 12.06 8.52 44.19 3.60
2344 2429 2.540101 AGACGCAAGCGCTCATATAAAC 59.460 45.455 12.06 0.00 44.19 2.01
2345 2430 2.539688 CAGACGCAAGCGCTCATATAAA 59.460 45.455 12.06 0.00 44.19 1.40
2346 2431 2.127251 CAGACGCAAGCGCTCATATAA 58.873 47.619 12.06 0.00 44.19 0.98
2347 2432 1.067060 ACAGACGCAAGCGCTCATATA 59.933 47.619 12.06 0.00 44.19 0.86
2348 2433 0.179100 ACAGACGCAAGCGCTCATAT 60.179 50.000 12.06 0.00 44.19 1.78
2349 2434 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
2350 2435 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
2351 2436 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
2352 2437 0.179171 TAGTACAGACGCAAGCGCTC 60.179 55.000 12.06 11.06 44.19 5.03
2353 2438 0.456221 ATAGTACAGACGCAAGCGCT 59.544 50.000 15.09 2.64 44.19 5.92
2354 2439 0.572590 CATAGTACAGACGCAAGCGC 59.427 55.000 15.09 0.00 44.19 5.92
2355 2440 1.909376 ACATAGTACAGACGCAAGCG 58.091 50.000 13.50 13.50 46.03 4.68
2356 2441 5.773239 TTTAACATAGTACAGACGCAAGC 57.227 39.130 0.00 0.00 45.62 4.01
2378 2463 7.885922 ACAATTTTCTACAACCAAACCCTTTTT 59.114 29.630 0.00 0.00 0.00 1.94
2379 2464 7.398829 ACAATTTTCTACAACCAAACCCTTTT 58.601 30.769 0.00 0.00 0.00 2.27
2380 2465 6.953101 ACAATTTTCTACAACCAAACCCTTT 58.047 32.000 0.00 0.00 0.00 3.11
2381 2466 6.553953 ACAATTTTCTACAACCAAACCCTT 57.446 33.333 0.00 0.00 0.00 3.95
2403 2488 6.557110 TGCGCTTCCCAAAGTTTATAATTAC 58.443 36.000 9.73 0.00 34.79 1.89
2413 2498 0.962356 CTCCATGCGCTTCCCAAAGT 60.962 55.000 9.73 0.00 34.79 2.66
2416 2501 2.045045 CCTCCATGCGCTTCCCAA 60.045 61.111 9.73 0.00 0.00 4.12
2417 2502 2.601702 TTCCTCCATGCGCTTCCCA 61.602 57.895 9.73 0.00 0.00 4.37
2418 2503 2.115291 GTTCCTCCATGCGCTTCCC 61.115 63.158 9.73 0.00 0.00 3.97
2420 2505 2.115291 GGGTTCCTCCATGCGCTTC 61.115 63.158 9.73 0.00 38.11 3.86
2421 2506 2.044946 GGGTTCCTCCATGCGCTT 60.045 61.111 9.73 0.00 38.11 4.68
2422 2507 4.473520 CGGGTTCCTCCATGCGCT 62.474 66.667 9.73 0.00 38.11 5.92
2425 2510 2.372074 TACCCGGGTTCCTCCATGC 61.372 63.158 35.42 0.00 38.11 4.06
2426 2511 1.268992 TGTACCCGGGTTCCTCCATG 61.269 60.000 35.42 0.00 38.11 3.66
2427 2512 0.327191 ATGTACCCGGGTTCCTCCAT 60.327 55.000 35.42 21.63 38.11 3.41
2429 2514 1.346722 CATATGTACCCGGGTTCCTCC 59.653 57.143 35.42 15.21 0.00 4.30
2430 2515 2.322658 TCATATGTACCCGGGTTCCTC 58.677 52.381 35.42 19.75 0.00 3.71
2432 2517 2.486013 GGTTCATATGTACCCGGGTTCC 60.486 54.545 35.42 23.23 30.30 3.62
2441 2526 7.653647 TGTTTTCAAAGTGGGTTCATATGTAC 58.346 34.615 1.90 3.04 0.00 2.90
2442 2527 7.825331 TGTTTTCAAAGTGGGTTCATATGTA 57.175 32.000 1.90 0.00 0.00 2.29
2444 2529 9.874205 AATATGTTTTCAAAGTGGGTTCATATG 57.126 29.630 0.00 0.00 0.00 1.78
2446 2531 9.921637 GAAATATGTTTTCAAAGTGGGTTCATA 57.078 29.630 0.00 0.00 0.00 2.15
2447 2532 8.650490 AGAAATATGTTTTCAAAGTGGGTTCAT 58.350 29.630 5.94 0.00 0.00 2.57
2448 2533 8.017418 AGAAATATGTTTTCAAAGTGGGTTCA 57.983 30.769 5.94 0.00 0.00 3.18
2449 2534 9.974980 TTAGAAATATGTTTTCAAAGTGGGTTC 57.025 29.630 5.94 0.00 0.00 3.62
2483 2568 4.937015 CCATGCCATCTTTTTCGGATTTTT 59.063 37.500 0.00 0.00 0.00 1.94
2484 2569 4.506758 CCATGCCATCTTTTTCGGATTTT 58.493 39.130 0.00 0.00 0.00 1.82
2485 2570 3.118665 CCCATGCCATCTTTTTCGGATTT 60.119 43.478 0.00 0.00 0.00 2.17
2486 2571 2.431782 CCCATGCCATCTTTTTCGGATT 59.568 45.455 0.00 0.00 0.00 3.01
2487 2572 2.034124 CCCATGCCATCTTTTTCGGAT 58.966 47.619 0.00 0.00 0.00 4.18
2488 2573 1.272425 ACCCATGCCATCTTTTTCGGA 60.272 47.619 0.00 0.00 0.00 4.55
2489 2574 1.185315 ACCCATGCCATCTTTTTCGG 58.815 50.000 0.00 0.00 0.00 4.30
2490 2575 2.223249 CGTACCCATGCCATCTTTTTCG 60.223 50.000 0.00 0.00 0.00 3.46
2491 2576 2.752903 ACGTACCCATGCCATCTTTTTC 59.247 45.455 0.00 0.00 0.00 2.29
2492 2577 2.802719 ACGTACCCATGCCATCTTTTT 58.197 42.857 0.00 0.00 0.00 1.94
2493 2578 2.507407 ACGTACCCATGCCATCTTTT 57.493 45.000 0.00 0.00 0.00 2.27
2494 2579 3.857157 ATACGTACCCATGCCATCTTT 57.143 42.857 0.00 0.00 0.00 2.52
2495 2580 3.135712 TGAATACGTACCCATGCCATCTT 59.864 43.478 0.00 0.00 0.00 2.40
2496 2581 2.703536 TGAATACGTACCCATGCCATCT 59.296 45.455 0.00 0.00 0.00 2.90
2497 2582 3.120321 TGAATACGTACCCATGCCATC 57.880 47.619 0.00 0.00 0.00 3.51
2498 2583 3.181445 ACATGAATACGTACCCATGCCAT 60.181 43.478 26.20 13.17 39.81 4.40
2499 2584 2.171659 ACATGAATACGTACCCATGCCA 59.828 45.455 26.20 8.54 39.81 4.92
2500 2585 2.846193 ACATGAATACGTACCCATGCC 58.154 47.619 26.20 4.23 39.81 4.40
2501 2586 4.127171 AGAACATGAATACGTACCCATGC 58.873 43.478 26.20 16.91 39.81 4.06
2502 2587 6.929049 ACATAGAACATGAATACGTACCCATG 59.071 38.462 25.32 25.32 41.40 3.66
2503 2588 6.929049 CACATAGAACATGAATACGTACCCAT 59.071 38.462 0.00 1.30 0.00 4.00
2504 2589 6.277605 CACATAGAACATGAATACGTACCCA 58.722 40.000 0.00 0.00 0.00 4.51
2505 2590 5.176958 GCACATAGAACATGAATACGTACCC 59.823 44.000 0.00 0.00 0.00 3.69
2506 2591 5.107989 CGCACATAGAACATGAATACGTACC 60.108 44.000 0.00 0.00 0.00 3.34
2507 2592 5.457799 ACGCACATAGAACATGAATACGTAC 59.542 40.000 0.00 0.00 0.00 3.67
2508 2593 5.457473 CACGCACATAGAACATGAATACGTA 59.543 40.000 0.00 0.00 0.00 3.57
2509 2594 4.267690 CACGCACATAGAACATGAATACGT 59.732 41.667 0.00 0.00 0.00 3.57
2510 2595 4.751172 CACGCACATAGAACATGAATACG 58.249 43.478 0.00 0.00 0.00 3.06
2511 2596 4.033932 TGCACGCACATAGAACATGAATAC 59.966 41.667 0.00 0.00 0.00 1.89
2512 2597 4.187694 TGCACGCACATAGAACATGAATA 58.812 39.130 0.00 0.00 0.00 1.75
2513 2598 3.009026 TGCACGCACATAGAACATGAAT 58.991 40.909 0.00 0.00 0.00 2.57
2514 2599 2.421619 TGCACGCACATAGAACATGAA 58.578 42.857 0.00 0.00 0.00 2.57
2515 2600 2.091852 TGCACGCACATAGAACATGA 57.908 45.000 0.00 0.00 0.00 3.07
2516 2601 4.534794 TTATGCACGCACATAGAACATG 57.465 40.909 0.00 0.00 34.15 3.21
2517 2602 4.635765 ACTTTATGCACGCACATAGAACAT 59.364 37.500 0.00 0.00 34.15 2.71
2518 2603 4.000325 ACTTTATGCACGCACATAGAACA 59.000 39.130 0.00 0.00 34.15 3.18
2519 2604 4.600012 ACTTTATGCACGCACATAGAAC 57.400 40.909 0.00 0.00 34.15 3.01
2520 2605 5.180304 TGAAACTTTATGCACGCACATAGAA 59.820 36.000 0.00 0.00 34.15 2.10
2521 2606 4.693095 TGAAACTTTATGCACGCACATAGA 59.307 37.500 0.00 0.00 34.15 1.98
2522 2607 4.788100 GTGAAACTTTATGCACGCACATAG 59.212 41.667 0.00 0.00 34.15 2.23
2523 2608 4.667922 CGTGAAACTTTATGCACGCACATA 60.668 41.667 0.00 0.00 45.81 2.29
2524 2609 3.564511 GTGAAACTTTATGCACGCACAT 58.435 40.909 0.00 0.00 0.00 3.21
2525 2610 2.601029 CGTGAAACTTTATGCACGCACA 60.601 45.455 0.00 0.00 45.81 4.57
2526 2611 1.969256 CGTGAAACTTTATGCACGCAC 59.031 47.619 0.00 0.00 45.81 5.34
2527 2612 2.308347 CGTGAAACTTTATGCACGCA 57.692 45.000 0.00 0.00 45.81 5.24
2573 2658 7.644986 TTCACGACACAATTTTTGTCTTTTT 57.355 28.000 12.48 0.00 43.23 1.94
2574 2659 7.506474 GTTTCACGACACAATTTTTGTCTTTT 58.494 30.769 12.48 0.00 43.23 2.27
2575 2660 6.183359 CGTTTCACGACACAATTTTTGTCTTT 60.183 34.615 12.48 0.00 46.05 2.52
2576 2661 5.285134 CGTTTCACGACACAATTTTTGTCTT 59.715 36.000 12.48 2.21 46.05 3.01
2577 2662 4.791163 CGTTTCACGACACAATTTTTGTCT 59.209 37.500 12.48 0.00 46.05 3.41
2578 2663 4.545519 GCGTTTCACGACACAATTTTTGTC 60.546 41.667 5.75 5.75 46.05 3.18
2579 2664 3.302170 GCGTTTCACGACACAATTTTTGT 59.698 39.130 0.00 0.00 46.05 2.83
2580 2665 3.545873 AGCGTTTCACGACACAATTTTTG 59.454 39.130 0.00 0.00 46.05 2.44
2581 2666 3.765026 AGCGTTTCACGACACAATTTTT 58.235 36.364 0.00 0.00 46.05 1.94
2582 2667 3.414549 AGCGTTTCACGACACAATTTT 57.585 38.095 0.00 0.00 46.05 1.82
2583 2668 4.742438 ATAGCGTTTCACGACACAATTT 57.258 36.364 0.00 0.00 46.05 1.82
2584 2669 4.742438 AATAGCGTTTCACGACACAATT 57.258 36.364 0.00 0.00 46.05 2.32
2585 2670 4.742438 AAATAGCGTTTCACGACACAAT 57.258 36.364 0.00 0.00 46.05 2.71
2586 2671 4.983538 TCTAAATAGCGTTTCACGACACAA 59.016 37.500 0.00 0.00 46.05 3.33
2587 2672 4.548494 TCTAAATAGCGTTTCACGACACA 58.452 39.130 0.00 0.00 46.05 3.72
2588 2673 5.505165 TTCTAAATAGCGTTTCACGACAC 57.495 39.130 0.00 0.00 46.05 3.67
2589 2674 4.090930 GCTTCTAAATAGCGTTTCACGACA 59.909 41.667 0.00 0.00 46.05 4.35
2590 2675 4.090930 TGCTTCTAAATAGCGTTTCACGAC 59.909 41.667 0.00 0.00 46.05 4.34
2591 2676 4.090930 GTGCTTCTAAATAGCGTTTCACGA 59.909 41.667 0.00 0.00 46.05 4.35
2592 2677 4.091509 AGTGCTTCTAAATAGCGTTTCACG 59.908 41.667 0.00 0.00 45.88 4.35
2593 2678 5.120208 TCAGTGCTTCTAAATAGCGTTTCAC 59.880 40.000 0.00 0.00 41.54 3.18
2594 2679 5.234752 TCAGTGCTTCTAAATAGCGTTTCA 58.765 37.500 0.00 0.00 41.54 2.69
2595 2680 5.779806 TCAGTGCTTCTAAATAGCGTTTC 57.220 39.130 0.00 0.00 41.54 2.78
2596 2681 6.554334 TTTCAGTGCTTCTAAATAGCGTTT 57.446 33.333 0.00 0.00 41.54 3.60
2597 2682 6.743575 ATTTCAGTGCTTCTAAATAGCGTT 57.256 33.333 0.00 0.00 41.54 4.84
2598 2683 6.743575 AATTTCAGTGCTTCTAAATAGCGT 57.256 33.333 0.00 0.00 41.54 5.07
2599 2684 7.023575 ACAAATTTCAGTGCTTCTAAATAGCG 58.976 34.615 0.00 0.00 41.54 4.26
2600 2685 8.239998 AGACAAATTTCAGTGCTTCTAAATAGC 58.760 33.333 0.00 0.00 39.10 2.97
2603 2688 9.822185 AAAAGACAAATTTCAGTGCTTCTAAAT 57.178 25.926 0.00 0.00 0.00 1.40
2604 2689 9.651913 AAAAAGACAAATTTCAGTGCTTCTAAA 57.348 25.926 0.00 0.00 0.00 1.85
2627 2712 5.696724 TCTTTTTGTTTTGTCTCCGCAAAAA 59.303 32.000 11.32 11.32 45.96 1.94
2628 2713 5.119434 GTCTTTTTGTTTTGTCTCCGCAAAA 59.881 36.000 0.00 0.00 43.46 2.44
2629 2714 4.623595 GTCTTTTTGTTTTGTCTCCGCAAA 59.376 37.500 0.00 0.00 36.67 3.68
2630 2715 4.170256 GTCTTTTTGTTTTGTCTCCGCAA 58.830 39.130 0.00 0.00 0.00 4.85
2631 2716 3.191581 TGTCTTTTTGTTTTGTCTCCGCA 59.808 39.130 0.00 0.00 0.00 5.69
2632 2717 3.765026 TGTCTTTTTGTTTTGTCTCCGC 58.235 40.909 0.00 0.00 0.00 5.54
2633 2718 6.885735 AAATGTCTTTTTGTTTTGTCTCCG 57.114 33.333 0.00 0.00 0.00 4.63
2634 2719 8.716909 TGAAAAATGTCTTTTTGTTTTGTCTCC 58.283 29.630 1.11 0.00 43.02 3.71
2635 2720 9.528847 GTGAAAAATGTCTTTTTGTTTTGTCTC 57.471 29.630 1.11 0.00 43.02 3.36
2636 2721 9.050601 TGTGAAAAATGTCTTTTTGTTTTGTCT 57.949 25.926 1.11 0.00 43.02 3.41
2637 2722 9.657121 TTGTGAAAAATGTCTTTTTGTTTTGTC 57.343 25.926 1.11 0.00 43.02 3.18
2645 2730 9.179552 GCAAAGTTTTGTGAAAAATGTCTTTTT 57.820 25.926 6.48 0.00 41.75 1.94
2646 2731 8.726650 GCAAAGTTTTGTGAAAAATGTCTTTT 57.273 26.923 6.48 0.00 40.24 2.27
2660 2745 1.876263 GCACGGCGCAAAGTTTTGT 60.876 52.632 10.83 0.00 41.79 2.83
2661 2746 2.920126 GCACGGCGCAAAGTTTTG 59.080 55.556 10.83 0.00 41.79 2.44
2675 2760 2.927429 TGTTCATAAATGTGTGCGCAC 58.073 42.857 33.11 33.11 45.44 5.34
2676 2761 3.057666 ACATGTTCATAAATGTGTGCGCA 60.058 39.130 5.66 5.66 35.71 6.09
2677 2762 3.500982 ACATGTTCATAAATGTGTGCGC 58.499 40.909 0.00 0.00 35.71 6.09
2678 2763 6.721442 CATACATGTTCATAAATGTGTGCG 57.279 37.500 2.30 0.00 38.50 5.34
2695 2780 9.675464 AATCAAAAGAAAATTCCATGCATACAT 57.325 25.926 0.00 0.00 36.79 2.29
2696 2781 9.504708 AAATCAAAAGAAAATTCCATGCATACA 57.495 25.926 0.00 0.00 0.00 2.29
2754 2839 4.440880 CATCTGCACCCACTTTTCAAAAA 58.559 39.130 0.00 0.00 0.00 1.94
2755 2840 3.740764 GCATCTGCACCCACTTTTCAAAA 60.741 43.478 0.00 0.00 41.59 2.44
2756 2841 2.224018 GCATCTGCACCCACTTTTCAAA 60.224 45.455 0.00 0.00 41.59 2.69
2757 2842 1.340889 GCATCTGCACCCACTTTTCAA 59.659 47.619 0.00 0.00 41.59 2.69
2758 2843 0.961019 GCATCTGCACCCACTTTTCA 59.039 50.000 0.00 0.00 41.59 2.69
2759 2844 0.244721 GGCATCTGCACCCACTTTTC 59.755 55.000 4.33 0.00 44.36 2.29
2760 2845 1.187567 GGGCATCTGCACCCACTTTT 61.188 55.000 5.25 0.00 46.22 2.27
2761 2846 1.607467 GGGCATCTGCACCCACTTT 60.607 57.895 5.25 0.00 46.22 2.66
2762 2847 2.036256 GGGCATCTGCACCCACTT 59.964 61.111 5.25 0.00 46.22 3.16
2768 2853 3.590466 AACCCAGGGGCATCTGCAC 62.590 63.158 11.37 0.00 45.53 4.57
2769 2854 3.267233 AACCCAGGGGCATCTGCA 61.267 61.111 11.37 0.00 44.36 4.41
2770 2855 2.440980 GAACCCAGGGGCATCTGC 60.441 66.667 11.37 0.00 39.32 4.26
2771 2856 1.077212 CTGAACCCAGGGGCATCTG 60.077 63.158 11.37 5.63 39.32 2.90
2772 2857 0.625683 ATCTGAACCCAGGGGCATCT 60.626 55.000 11.37 0.00 40.76 2.90
2773 2858 0.179006 GATCTGAACCCAGGGGCATC 60.179 60.000 11.37 5.83 40.76 3.91
2774 2859 1.925888 GATCTGAACCCAGGGGCAT 59.074 57.895 11.37 0.00 40.76 4.40
2775 2860 2.669133 CGATCTGAACCCAGGGGCA 61.669 63.158 11.37 6.80 40.76 5.36
2776 2861 2.190578 CGATCTGAACCCAGGGGC 59.809 66.667 11.37 1.48 40.76 5.80
2777 2862 0.107654 GAACGATCTGAACCCAGGGG 60.108 60.000 11.37 6.87 40.76 4.79
2778 2863 0.107654 GGAACGATCTGAACCCAGGG 60.108 60.000 2.85 2.85 40.76 4.45
2779 2864 0.107654 GGGAACGATCTGAACCCAGG 60.108 60.000 0.00 0.00 40.76 4.45
2780 2865 0.613260 TGGGAACGATCTGAACCCAG 59.387 55.000 11.08 0.00 44.50 4.45
2781 2866 0.323629 GTGGGAACGATCTGAACCCA 59.676 55.000 11.08 11.08 46.74 4.51
2782 2867 0.613777 AGTGGGAACGATCTGAACCC 59.386 55.000 0.00 0.00 40.79 4.11
2783 2868 1.405661 GGAGTGGGAACGATCTGAACC 60.406 57.143 0.00 0.00 0.00 3.62
2784 2869 1.550976 AGGAGTGGGAACGATCTGAAC 59.449 52.381 0.00 0.00 0.00 3.18
2785 2870 1.550524 CAGGAGTGGGAACGATCTGAA 59.449 52.381 0.00 0.00 0.00 3.02
2786 2871 1.186200 CAGGAGTGGGAACGATCTGA 58.814 55.000 0.00 0.00 0.00 3.27
2787 2872 1.186200 TCAGGAGTGGGAACGATCTG 58.814 55.000 0.00 0.00 0.00 2.90
2788 2873 1.938585 TTCAGGAGTGGGAACGATCT 58.061 50.000 0.00 0.00 0.00 2.75
2789 2874 2.762535 TTTCAGGAGTGGGAACGATC 57.237 50.000 0.00 0.00 0.00 3.69
2790 2875 3.502123 TTTTTCAGGAGTGGGAACGAT 57.498 42.857 0.00 0.00 0.00 3.73
2791 2876 3.502123 ATTTTTCAGGAGTGGGAACGA 57.498 42.857 0.00 0.00 0.00 3.85
2792 2877 4.941263 TCATATTTTTCAGGAGTGGGAACG 59.059 41.667 0.00 0.00 0.00 3.95
2793 2878 6.208599 TGTTCATATTTTTCAGGAGTGGGAAC 59.791 38.462 0.00 0.00 0.00 3.62
2794 2879 6.310941 TGTTCATATTTTTCAGGAGTGGGAA 58.689 36.000 0.00 0.00 0.00 3.97
2795 2880 5.886609 TGTTCATATTTTTCAGGAGTGGGA 58.113 37.500 0.00 0.00 0.00 4.37
2796 2881 6.588719 TTGTTCATATTTTTCAGGAGTGGG 57.411 37.500 0.00 0.00 0.00 4.61
2797 2882 7.432869 TGTTTGTTCATATTTTTCAGGAGTGG 58.567 34.615 0.00 0.00 0.00 4.00
2798 2883 8.918658 CATGTTTGTTCATATTTTTCAGGAGTG 58.081 33.333 0.00 0.00 0.00 3.51
2799 2884 8.859090 TCATGTTTGTTCATATTTTTCAGGAGT 58.141 29.630 0.00 0.00 0.00 3.85
2800 2885 9.695526 TTCATGTTTGTTCATATTTTTCAGGAG 57.304 29.630 0.00 0.00 0.00 3.69
2801 2886 9.474920 GTTCATGTTTGTTCATATTTTTCAGGA 57.525 29.630 0.00 0.00 0.00 3.86
2802 2887 9.258826 TGTTCATGTTTGTTCATATTTTTCAGG 57.741 29.630 0.00 0.00 0.00 3.86
2844 2929 5.930569 TCATCAGCATTTCAATAGGATCGAG 59.069 40.000 0.00 0.00 0.00 4.04
2859 2944 5.023533 ACGTAGTAACCAATCATCAGCAT 57.976 39.130 0.00 0.00 41.94 3.79
2860 2945 4.465632 ACGTAGTAACCAATCATCAGCA 57.534 40.909 0.00 0.00 41.94 4.41
2933 3022 8.647796 ACATCCAAATTTGCATCATCTATGAAT 58.352 29.630 12.92 0.00 40.69 2.57
2935 3024 7.591421 ACATCCAAATTTGCATCATCTATGA 57.409 32.000 12.92 1.15 41.70 2.15
2955 3044 1.591619 GCCGCCGACTAGTTTTACATC 59.408 52.381 0.00 0.00 0.00 3.06
3036 3125 3.787001 GCCCCTAGTCGCTTGGCT 61.787 66.667 0.00 0.00 39.05 4.75
3047 3136 1.912220 CATTTGACCTCCGCCCCTA 59.088 57.895 0.00 0.00 0.00 3.53
3050 3139 3.508840 CGCATTTGACCTCCGCCC 61.509 66.667 0.00 0.00 0.00 6.13
3052 3141 4.179579 GCCGCATTTGACCTCCGC 62.180 66.667 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.