Multiple sequence alignment - TraesCS5D01G177300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G177300 chr5D 100.000 2619 0 0 1 2619 277078590 277081208 0.000000e+00 4837.0
1 TraesCS5D01G177300 chr5D 91.429 560 36 4 2070 2619 267939953 267939396 0.000000e+00 758.0
2 TraesCS5D01G177300 chr5D 100.000 391 0 0 1 391 277097046 277097436 0.000000e+00 723.0
3 TraesCS5D01G177300 chr5D 81.327 648 69 26 110 714 447102050 447101412 1.820000e-131 479.0
4 TraesCS5D01G177300 chr5D 86.194 268 21 10 1102 1359 277262819 277263080 2.570000e-70 276.0
5 TraesCS5D01G177300 chr5D 93.220 118 7 1 1961 2078 66187455 66187571 3.470000e-39 172.0
6 TraesCS5D01G177300 chr5D 89.916 119 10 2 1 117 28649994 28649876 4.510000e-33 152.0
7 TraesCS5D01G177300 chr5B 88.730 976 60 21 734 1685 314967774 314968723 0.000000e+00 1147.0
8 TraesCS5D01G177300 chr5B 83.659 563 64 13 153 692 290709514 290710071 3.010000e-139 505.0
9 TraesCS5D01G177300 chr5B 85.926 270 23 10 1098 1359 315185842 315186104 9.230000e-70 274.0
10 TraesCS5D01G177300 chr5A 85.436 1078 78 44 736 1768 365936836 365937879 0.000000e+00 1048.0
11 TraesCS5D01G177300 chr5A 86.029 272 22 12 1098 1359 366251393 366251658 7.140000e-71 278.0
12 TraesCS5D01G177300 chr2D 87.394 706 44 8 1958 2619 186419688 186418984 0.000000e+00 769.0
13 TraesCS5D01G177300 chr2D 87.270 707 35 14 1957 2619 255748752 255748057 0.000000e+00 756.0
14 TraesCS5D01G177300 chr2D 82.364 516 43 13 219 713 155408966 155409454 3.140000e-109 405.0
15 TraesCS5D01G177300 chr2D 94.262 122 6 1 1958 2078 542897159 542897038 4.450000e-43 185.0
16 TraesCS5D01G177300 chr2D 89.600 125 7 6 1958 2078 300072157 300072035 1.260000e-33 154.0
17 TraesCS5D01G177300 chr3D 91.592 559 36 3 2070 2619 176579455 176578899 0.000000e+00 761.0
18 TraesCS5D01G177300 chr3D 91.200 125 5 4 1958 2078 231515626 231515748 5.800000e-37 165.0
19 TraesCS5D01G177300 chr3D 89.600 125 7 4 1958 2078 261614306 261614428 1.260000e-33 154.0
20 TraesCS5D01G177300 chr3D 90.517 116 7 3 4 117 3352721 3352608 1.620000e-32 150.0
21 TraesCS5D01G177300 chr1D 86.827 706 48 5 1958 2619 93646344 93645640 0.000000e+00 747.0
22 TraesCS5D01G177300 chr1D 86.686 706 49 4 1958 2619 301765729 301766433 0.000000e+00 741.0
23 TraesCS5D01G177300 chr1D 86.441 708 50 9 1957 2619 301778760 301779466 0.000000e+00 734.0
24 TraesCS5D01G177300 chr1D 89.078 412 36 5 308 713 77397351 77397759 1.080000e-138 503.0
25 TraesCS5D01G177300 chr1D 88.333 120 9 4 1 117 72560611 72560494 3.510000e-29 139.0
26 TraesCS5D01G177300 chr6D 86.761 710 45 8 1958 2618 217790485 217789776 0.000000e+00 745.0
27 TraesCS5D01G177300 chr6D 85.161 620 67 12 110 713 299184318 299184928 1.720000e-171 612.0
28 TraesCS5D01G177300 chr6D 89.844 128 6 3 1958 2078 269060952 269060825 9.700000e-35 158.0
29 TraesCS5D01G177300 chr4D 86.261 706 52 10 1958 2619 196263370 196264074 0.000000e+00 725.0
30 TraesCS5D01G177300 chr4D 86.505 289 29 6 276 562 473865139 473864859 2.530000e-80 309.0
31 TraesCS5D01G177300 chr4D 89.516 124 8 4 1958 2078 237249016 237248895 4.510000e-33 152.0
32 TraesCS5D01G177300 chr4D 89.516 124 8 3 1958 2078 373739469 373739348 4.510000e-33 152.0
33 TraesCS5D01G177300 chr4D 85.593 118 13 4 1 115 483459818 483459934 1.270000e-23 121.0
34 TraesCS5D01G177300 chrUn 100.000 391 0 0 1 391 392399682 392399292 0.000000e+00 723.0
35 TraesCS5D01G177300 chr1B 84.738 629 59 19 110 713 616622922 616622306 1.740000e-166 595.0
36 TraesCS5D01G177300 chr1B 83.837 563 62 13 111 647 152859585 152860144 2.330000e-140 508.0
37 TraesCS5D01G177300 chr1B 83.854 384 47 6 275 647 435400458 435400079 4.150000e-93 351.0
38 TraesCS5D01G177300 chr7A 84.228 615 78 11 110 713 105681173 105681779 4.860000e-162 580.0
39 TraesCS5D01G177300 chr7A 88.793 116 11 2 1 115 632593096 632593210 9.770000e-30 141.0
40 TraesCS5D01G177300 chr7A 100.000 33 0 0 2070 2102 281450567 281450599 7.830000e-06 62.1
41 TraesCS5D01G177300 chr7B 84.768 604 62 20 110 686 229214128 229214728 1.750000e-161 579.0
42 TraesCS5D01G177300 chr3A 84.565 609 64 17 112 713 8143624 8144209 6.290000e-161 577.0
43 TraesCS5D01G177300 chr4B 82.810 605 80 15 110 696 418758454 418757856 1.070000e-143 520.0
44 TraesCS5D01G177300 chr6A 83.333 510 62 11 110 602 101409197 101408694 1.430000e-122 449.0
45 TraesCS5D01G177300 chr6B 87.738 367 31 9 110 466 519849432 519849070 1.450000e-112 416.0
46 TraesCS5D01G177300 chr7D 90.909 121 9 2 1958 2078 479018813 479018931 7.500000e-36 161.0
47 TraesCS5D01G177300 chr7D 84.426 122 13 5 1 117 161411298 161411418 5.920000e-22 115.0
48 TraesCS5D01G177300 chr7D 84.298 121 14 5 1 117 339603271 339603152 2.130000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G177300 chr5D 277078590 277081208 2618 False 4837 4837 100.000 1 2619 1 chr5D.!!$F2 2618
1 TraesCS5D01G177300 chr5D 267939396 267939953 557 True 758 758 91.429 2070 2619 1 chr5D.!!$R2 549
2 TraesCS5D01G177300 chr5D 447101412 447102050 638 True 479 479 81.327 110 714 1 chr5D.!!$R3 604
3 TraesCS5D01G177300 chr5B 314967774 314968723 949 False 1147 1147 88.730 734 1685 1 chr5B.!!$F2 951
4 TraesCS5D01G177300 chr5B 290709514 290710071 557 False 505 505 83.659 153 692 1 chr5B.!!$F1 539
5 TraesCS5D01G177300 chr5A 365936836 365937879 1043 False 1048 1048 85.436 736 1768 1 chr5A.!!$F1 1032
6 TraesCS5D01G177300 chr2D 186418984 186419688 704 True 769 769 87.394 1958 2619 1 chr2D.!!$R1 661
7 TraesCS5D01G177300 chr2D 255748057 255748752 695 True 756 756 87.270 1957 2619 1 chr2D.!!$R2 662
8 TraesCS5D01G177300 chr3D 176578899 176579455 556 True 761 761 91.592 2070 2619 1 chr3D.!!$R2 549
9 TraesCS5D01G177300 chr1D 93645640 93646344 704 True 747 747 86.827 1958 2619 1 chr1D.!!$R2 661
10 TraesCS5D01G177300 chr1D 301765729 301766433 704 False 741 741 86.686 1958 2619 1 chr1D.!!$F2 661
11 TraesCS5D01G177300 chr1D 301778760 301779466 706 False 734 734 86.441 1957 2619 1 chr1D.!!$F3 662
12 TraesCS5D01G177300 chr6D 217789776 217790485 709 True 745 745 86.761 1958 2618 1 chr6D.!!$R1 660
13 TraesCS5D01G177300 chr6D 299184318 299184928 610 False 612 612 85.161 110 713 1 chr6D.!!$F1 603
14 TraesCS5D01G177300 chr4D 196263370 196264074 704 False 725 725 86.261 1958 2619 1 chr4D.!!$F1 661
15 TraesCS5D01G177300 chr1B 616622306 616622922 616 True 595 595 84.738 110 713 1 chr1B.!!$R2 603
16 TraesCS5D01G177300 chr1B 152859585 152860144 559 False 508 508 83.837 111 647 1 chr1B.!!$F1 536
17 TraesCS5D01G177300 chr7A 105681173 105681779 606 False 580 580 84.228 110 713 1 chr7A.!!$F1 603
18 TraesCS5D01G177300 chr7B 229214128 229214728 600 False 579 579 84.768 110 686 1 chr7B.!!$F1 576
19 TraesCS5D01G177300 chr3A 8143624 8144209 585 False 577 577 84.565 112 713 1 chr3A.!!$F1 601
20 TraesCS5D01G177300 chr4B 418757856 418758454 598 True 520 520 82.810 110 696 1 chr4B.!!$R1 586
21 TraesCS5D01G177300 chr6A 101408694 101409197 503 True 449 449 83.333 110 602 1 chr6A.!!$R1 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 791 0.178975 ACTGGACCGATTTTTGGGCA 60.179 50.0 0.0 0.0 35.62 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2092 0.033894 TAAGGGTTTGCCGGAATCCC 60.034 55.0 5.05 10.76 42.23 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.101448 CCAGAGGCCGACCCCAAG 62.101 72.222 0.00 0.00 36.11 3.61
35 36 3.003173 CAGAGGCCGACCCCAAGA 61.003 66.667 0.00 0.00 36.11 3.02
36 37 3.003763 AGAGGCCGACCCCAAGAC 61.004 66.667 0.00 0.00 36.11 3.01
37 38 4.452733 GAGGCCGACCCCAAGACG 62.453 72.222 0.00 0.00 36.11 4.18
39 40 4.324991 GGCCGACCCCAAGACGTT 62.325 66.667 0.00 0.00 0.00 3.99
40 41 2.281276 GCCGACCCCAAGACGTTT 60.281 61.111 0.00 0.00 0.00 3.60
41 42 1.004679 GCCGACCCCAAGACGTTTA 60.005 57.895 0.00 0.00 0.00 2.01
42 43 0.603439 GCCGACCCCAAGACGTTTAA 60.603 55.000 0.00 0.00 0.00 1.52
43 44 1.881591 CCGACCCCAAGACGTTTAAA 58.118 50.000 0.00 0.00 0.00 1.52
44 45 2.429478 CCGACCCCAAGACGTTTAAAT 58.571 47.619 0.00 0.00 0.00 1.40
45 46 2.815503 CCGACCCCAAGACGTTTAAATT 59.184 45.455 0.00 0.00 0.00 1.82
46 47 3.120095 CCGACCCCAAGACGTTTAAATTC 60.120 47.826 0.00 0.00 0.00 2.17
47 48 3.499157 CGACCCCAAGACGTTTAAATTCA 59.501 43.478 0.00 0.00 0.00 2.57
48 49 4.023878 CGACCCCAAGACGTTTAAATTCAA 60.024 41.667 0.00 0.00 0.00 2.69
49 50 5.505985 CGACCCCAAGACGTTTAAATTCAAA 60.506 40.000 0.00 0.00 0.00 2.69
50 51 5.593968 ACCCCAAGACGTTTAAATTCAAAC 58.406 37.500 0.00 0.00 35.49 2.93
51 52 4.986034 CCCCAAGACGTTTAAATTCAAACC 59.014 41.667 0.00 0.00 35.42 3.27
52 53 5.221362 CCCCAAGACGTTTAAATTCAAACCT 60.221 40.000 0.00 0.00 35.42 3.50
53 54 5.689961 CCCAAGACGTTTAAATTCAAACCTG 59.310 40.000 0.00 0.00 35.42 4.00
54 55 6.460399 CCCAAGACGTTTAAATTCAAACCTGA 60.460 38.462 0.00 0.00 35.42 3.86
55 56 6.416750 CCAAGACGTTTAAATTCAAACCTGAC 59.583 38.462 0.00 0.00 35.42 3.51
56 57 6.687081 AGACGTTTAAATTCAAACCTGACA 57.313 33.333 0.00 0.00 35.42 3.58
57 58 7.272037 AGACGTTTAAATTCAAACCTGACAT 57.728 32.000 0.00 0.00 35.42 3.06
58 59 7.712797 AGACGTTTAAATTCAAACCTGACATT 58.287 30.769 0.00 0.00 35.42 2.71
59 60 8.194769 AGACGTTTAAATTCAAACCTGACATTT 58.805 29.630 0.00 0.00 35.42 2.32
60 61 8.347729 ACGTTTAAATTCAAACCTGACATTTC 57.652 30.769 0.00 0.00 35.42 2.17
61 62 7.436970 ACGTTTAAATTCAAACCTGACATTTCC 59.563 33.333 0.00 0.00 35.42 3.13
62 63 7.095816 CGTTTAAATTCAAACCTGACATTTCCC 60.096 37.037 0.00 0.00 35.42 3.97
63 64 4.519540 AATTCAAACCTGACATTTCCCG 57.480 40.909 0.00 0.00 0.00 5.14
64 65 1.243902 TCAAACCTGACATTTCCCGC 58.756 50.000 0.00 0.00 0.00 6.13
65 66 1.202879 TCAAACCTGACATTTCCCGCT 60.203 47.619 0.00 0.00 0.00 5.52
66 67 2.039216 TCAAACCTGACATTTCCCGCTA 59.961 45.455 0.00 0.00 0.00 4.26
67 68 2.109425 AACCTGACATTTCCCGCTAC 57.891 50.000 0.00 0.00 0.00 3.58
68 69 0.252197 ACCTGACATTTCCCGCTACC 59.748 55.000 0.00 0.00 0.00 3.18
69 70 0.463833 CCTGACATTTCCCGCTACCC 60.464 60.000 0.00 0.00 0.00 3.69
70 71 0.251916 CTGACATTTCCCGCTACCCA 59.748 55.000 0.00 0.00 0.00 4.51
71 72 0.693622 TGACATTTCCCGCTACCCAA 59.306 50.000 0.00 0.00 0.00 4.12
72 73 1.074084 TGACATTTCCCGCTACCCAAA 59.926 47.619 0.00 0.00 0.00 3.28
73 74 2.164338 GACATTTCCCGCTACCCAAAA 58.836 47.619 0.00 0.00 0.00 2.44
74 75 2.559231 GACATTTCCCGCTACCCAAAAA 59.441 45.455 0.00 0.00 0.00 1.94
94 95 3.195698 GCCACAAGTCCGGCGATC 61.196 66.667 9.30 0.00 38.82 3.69
95 96 2.264480 CCACAAGTCCGGCGATCA 59.736 61.111 9.30 0.00 0.00 2.92
96 97 2.100631 CCACAAGTCCGGCGATCAC 61.101 63.158 9.30 1.37 0.00 3.06
97 98 2.100631 CACAAGTCCGGCGATCACC 61.101 63.158 9.30 0.00 0.00 4.02
98 99 2.264480 CAAGTCCGGCGATCACCA 59.736 61.111 9.30 0.00 0.00 4.17
99 100 1.153369 CAAGTCCGGCGATCACCAT 60.153 57.895 9.30 0.00 0.00 3.55
100 101 1.153369 AAGTCCGGCGATCACCATG 60.153 57.895 9.30 0.00 0.00 3.66
101 102 3.272334 GTCCGGCGATCACCATGC 61.272 66.667 9.30 0.00 0.00 4.06
102 103 4.545706 TCCGGCGATCACCATGCC 62.546 66.667 9.30 0.00 45.39 4.40
106 107 3.104766 GCGATCACCATGCCACAG 58.895 61.111 0.00 0.00 0.00 3.66
107 108 1.746615 GCGATCACCATGCCACAGT 60.747 57.895 0.00 0.00 0.00 3.55
108 109 1.308069 GCGATCACCATGCCACAGTT 61.308 55.000 0.00 0.00 0.00 3.16
141 142 0.401738 CTTTGCTGGTTCCAGGGAGA 59.598 55.000 18.81 0.00 34.85 3.71
142 143 0.401738 TTTGCTGGTTCCAGGGAGAG 59.598 55.000 18.81 0.00 34.85 3.20
205 212 1.004440 GACGCCTCTGCTTGTTCCT 60.004 57.895 0.00 0.00 34.43 3.36
403 468 2.895372 GGCGTTGGCATCGGTAGG 60.895 66.667 18.54 0.00 42.47 3.18
407 472 3.804329 TTGGCATCGGTAGGGGCC 61.804 66.667 0.00 0.00 46.58 5.80
438 503 0.459585 GTACTTCTTCGGCGGCATGA 60.460 55.000 10.53 0.06 0.00 3.07
439 504 0.464036 TACTTCTTCGGCGGCATGAT 59.536 50.000 10.53 0.00 0.00 2.45
441 506 1.078497 TTCTTCGGCGGCATGATGT 60.078 52.632 10.53 0.00 0.00 3.06
449 516 1.069596 CGGCATGATGTCCGGATGA 59.930 57.895 7.81 0.00 41.82 2.92
564 656 3.371063 GACAGAGCGGACCCACGA 61.371 66.667 0.00 0.00 35.47 4.35
580 672 0.951040 ACGAGCCTTTTCGCTTCAGG 60.951 55.000 0.00 0.00 44.15 3.86
630 722 3.296836 TTCGACTCGGGTTCGCCA 61.297 61.111 0.00 0.00 39.65 5.69
663 760 2.614481 GGCCCGGCGATAAATGAGATTA 60.614 50.000 9.30 0.00 0.00 1.75
668 767 4.503910 CGGCGATAAATGAGATTATGGGA 58.496 43.478 0.00 0.00 0.00 4.37
692 791 0.178975 ACTGGACCGATTTTTGGGCA 60.179 50.000 0.00 0.00 35.62 5.36
706 805 1.081041 GGGCACCGGCGTTAAAAAG 60.081 57.895 6.01 0.00 40.86 2.27
708 807 0.873721 GGCACCGGCGTTAAAAAGTA 59.126 50.000 6.01 0.00 42.47 2.24
714 813 2.344025 CGGCGTTAAAAAGTAGCCTCT 58.656 47.619 0.00 0.00 45.16 3.69
715 814 2.740447 CGGCGTTAAAAAGTAGCCTCTT 59.260 45.455 0.00 0.00 45.16 2.85
716 815 3.181523 CGGCGTTAAAAAGTAGCCTCTTC 60.182 47.826 0.00 0.00 45.16 2.87
717 816 4.001652 GGCGTTAAAAAGTAGCCTCTTCT 58.998 43.478 0.00 0.00 44.06 2.85
718 817 4.093115 GGCGTTAAAAAGTAGCCTCTTCTC 59.907 45.833 0.00 0.00 44.06 2.87
719 818 4.093115 GCGTTAAAAAGTAGCCTCTTCTCC 59.907 45.833 0.00 0.00 0.00 3.71
720 819 4.326548 CGTTAAAAAGTAGCCTCTTCTCCG 59.673 45.833 0.00 0.00 0.00 4.63
721 820 3.336138 AAAAAGTAGCCTCTTCTCCGG 57.664 47.619 0.00 0.00 0.00 5.14
722 821 0.537653 AAAGTAGCCTCTTCTCCGGC 59.462 55.000 0.00 0.00 46.65 6.13
726 825 3.077556 GCCTCTTCTCCGGCTGGA 61.078 66.667 15.16 15.16 42.98 3.86
756 855 1.273886 AGTTGAAGCTTCTCGTCCTCC 59.726 52.381 26.09 6.17 0.00 4.30
780 887 2.099098 ACCAAAACGAGCCAACTCAAAG 59.901 45.455 0.00 0.00 43.66 2.77
785 892 3.692791 ACGAGCCAACTCAAAGAAAAC 57.307 42.857 0.00 0.00 43.66 2.43
827 937 6.494893 TGTTACTTTGAGGAATTGATTCGG 57.505 37.500 0.00 0.00 37.67 4.30
832 942 4.301072 TTGAGGAATTGATTCGGGTTCT 57.699 40.909 0.00 0.00 37.67 3.01
884 994 2.202676 GCAGCTTCTCCGTCCGAG 60.203 66.667 0.00 0.00 40.30 4.63
966 1076 0.804364 GCGCTTCACATTCATCCACA 59.196 50.000 0.00 0.00 0.00 4.17
967 1077 1.402968 GCGCTTCACATTCATCCACAT 59.597 47.619 0.00 0.00 0.00 3.21
968 1078 2.613595 GCGCTTCACATTCATCCACATA 59.386 45.455 0.00 0.00 0.00 2.29
969 1079 3.251729 GCGCTTCACATTCATCCACATAT 59.748 43.478 0.00 0.00 0.00 1.78
1066 1183 2.262915 CACCGAGCCACAGGAGAC 59.737 66.667 0.00 0.00 0.00 3.36
1072 1189 1.228769 AGCCACAGGAGACCGTGTA 60.229 57.895 0.00 0.00 39.14 2.90
1093 1210 2.749621 AGGTTTGATTTTAGCGAGCCAG 59.250 45.455 0.00 0.00 0.00 4.85
1097 1214 1.134401 TGATTTTAGCGAGCCAGAGGG 60.134 52.381 0.00 0.00 37.18 4.30
1196 1316 1.374947 CGGGCAAGGAGAAGACCAA 59.625 57.895 0.00 0.00 0.00 3.67
1571 1699 1.811965 CTCCATCCGATGTGTTTTGCA 59.188 47.619 7.60 0.00 0.00 4.08
1581 1714 1.202394 TGTGTTTTGCATGTGACTGGC 60.202 47.619 0.00 0.00 0.00 4.85
1595 1728 2.026356 TGACTGGCTTGGCAAATAGCTA 60.026 45.455 9.34 0.00 44.79 3.32
1598 1731 2.357009 CTGGCTTGGCAAATAGCTAGTG 59.643 50.000 13.14 1.02 44.79 2.74
1599 1732 2.290896 TGGCTTGGCAAATAGCTAGTGT 60.291 45.455 9.34 0.00 44.79 3.55
1600 1733 3.054728 TGGCTTGGCAAATAGCTAGTGTA 60.055 43.478 9.34 0.00 44.79 2.90
1628 1769 3.794717 TGTGTGTTTGTTACCGCTCTTA 58.205 40.909 0.00 0.00 0.00 2.10
1631 1772 6.167685 TGTGTGTTTGTTACCGCTCTTATAT 58.832 36.000 0.00 0.00 0.00 0.86
1672 1819 6.789262 AGCTGTGCTTATTATGTTGTGATTC 58.211 36.000 0.00 0.00 33.89 2.52
1687 1834 7.032580 TGTTGTGATTCGTGAAATGAGTTTTT 58.967 30.769 0.00 0.00 30.60 1.94
1710 1857 2.766313 TCCGAGTGGAAGTGTGAAATG 58.234 47.619 0.00 0.00 42.85 2.32
1711 1858 2.367241 TCCGAGTGGAAGTGTGAAATGA 59.633 45.455 0.00 0.00 42.85 2.57
1712 1859 2.738846 CCGAGTGGAAGTGTGAAATGAG 59.261 50.000 0.00 0.00 37.49 2.90
1713 1860 3.393800 CGAGTGGAAGTGTGAAATGAGT 58.606 45.455 0.00 0.00 0.00 3.41
1714 1861 3.430218 CGAGTGGAAGTGTGAAATGAGTC 59.570 47.826 0.00 0.00 0.00 3.36
1715 1862 3.393800 AGTGGAAGTGTGAAATGAGTCG 58.606 45.455 0.00 0.00 0.00 4.18
1716 1863 2.096218 GTGGAAGTGTGAAATGAGTCGC 60.096 50.000 0.00 0.00 0.00 5.19
1717 1864 2.224281 TGGAAGTGTGAAATGAGTCGCT 60.224 45.455 0.00 0.00 0.00 4.93
1718 1865 3.006430 TGGAAGTGTGAAATGAGTCGCTA 59.994 43.478 0.00 0.00 0.00 4.26
1720 1867 5.105513 TGGAAGTGTGAAATGAGTCGCTATA 60.106 40.000 0.00 0.00 0.00 1.31
1722 1869 7.145985 GGAAGTGTGAAATGAGTCGCTATATA 58.854 38.462 0.00 0.00 0.00 0.86
1723 1870 7.652105 GGAAGTGTGAAATGAGTCGCTATATAA 59.348 37.037 0.00 0.00 0.00 0.98
1724 1871 7.932120 AGTGTGAAATGAGTCGCTATATAAC 57.068 36.000 0.00 0.00 0.00 1.89
1725 1872 6.637254 AGTGTGAAATGAGTCGCTATATAACG 59.363 38.462 0.00 0.00 0.00 3.18
1726 1873 5.918576 TGTGAAATGAGTCGCTATATAACGG 59.081 40.000 5.75 0.00 0.00 4.44
1727 1874 6.147581 GTGAAATGAGTCGCTATATAACGGA 58.852 40.000 5.75 0.00 0.00 4.69
1733 1889 3.946558 AGTCGCTATATAACGGAGATCCC 59.053 47.826 5.75 0.00 0.00 3.85
1760 1916 4.946157 GGTTCTGAATTCTGATGGACATGT 59.054 41.667 14.89 0.00 0.00 3.21
1763 1919 4.397103 TCTGAATTCTGATGGACATGTTGC 59.603 41.667 10.68 0.00 0.00 4.17
1768 1924 3.489355 TCTGATGGACATGTTGCAACTT 58.511 40.909 28.61 20.54 0.00 2.66
1769 1925 3.253921 TCTGATGGACATGTTGCAACTTG 59.746 43.478 32.44 32.44 39.26 3.16
1770 1926 2.296752 TGATGGACATGTTGCAACTTGG 59.703 45.455 35.06 24.30 38.11 3.61
1771 1927 1.039068 TGGACATGTTGCAACTTGGG 58.961 50.000 35.06 22.36 38.11 4.12
1772 1928 1.039856 GGACATGTTGCAACTTGGGT 58.960 50.000 35.06 24.68 38.11 4.51
1773 1929 2.235016 GGACATGTTGCAACTTGGGTA 58.765 47.619 35.06 16.65 38.11 3.69
1774 1930 2.825532 GGACATGTTGCAACTTGGGTAT 59.174 45.455 35.06 21.88 38.11 2.73
1775 1931 3.119495 GGACATGTTGCAACTTGGGTATC 60.119 47.826 35.06 26.37 38.11 2.24
1776 1932 3.758554 GACATGTTGCAACTTGGGTATCT 59.241 43.478 35.06 21.03 38.11 1.98
1777 1933 3.507233 ACATGTTGCAACTTGGGTATCTG 59.493 43.478 35.06 17.46 38.11 2.90
1778 1934 3.500448 TGTTGCAACTTGGGTATCTGA 57.500 42.857 28.61 2.43 0.00 3.27
1779 1935 3.411446 TGTTGCAACTTGGGTATCTGAG 58.589 45.455 28.61 0.00 0.00 3.35
1780 1936 3.181445 TGTTGCAACTTGGGTATCTGAGT 60.181 43.478 28.61 0.00 0.00 3.41
1781 1937 3.788227 TGCAACTTGGGTATCTGAGTT 57.212 42.857 0.00 0.00 32.89 3.01
1782 1938 3.674997 TGCAACTTGGGTATCTGAGTTC 58.325 45.455 0.00 0.00 30.41 3.01
1783 1939 3.010420 GCAACTTGGGTATCTGAGTTCC 58.990 50.000 0.00 0.00 30.41 3.62
1784 1940 3.559171 GCAACTTGGGTATCTGAGTTCCA 60.559 47.826 0.00 0.00 30.41 3.53
1785 1941 3.983044 ACTTGGGTATCTGAGTTCCAC 57.017 47.619 0.00 0.00 0.00 4.02
1786 1942 3.248024 ACTTGGGTATCTGAGTTCCACA 58.752 45.455 0.00 0.00 0.00 4.17
1787 1943 3.846588 ACTTGGGTATCTGAGTTCCACAT 59.153 43.478 0.00 0.00 0.00 3.21
1788 1944 3.912496 TGGGTATCTGAGTTCCACATG 57.088 47.619 0.00 0.00 0.00 3.21
1789 1945 3.449918 TGGGTATCTGAGTTCCACATGA 58.550 45.455 0.00 0.00 0.00 3.07
1790 1946 3.452264 TGGGTATCTGAGTTCCACATGAG 59.548 47.826 0.00 0.00 0.00 2.90
1791 1947 3.462021 GGTATCTGAGTTCCACATGAGC 58.538 50.000 0.00 0.00 0.00 4.26
1792 1948 3.133721 GGTATCTGAGTTCCACATGAGCT 59.866 47.826 0.00 0.00 37.22 4.09
1793 1949 3.996921 ATCTGAGTTCCACATGAGCTT 57.003 42.857 0.00 0.00 34.27 3.74
1794 1950 3.325293 TCTGAGTTCCACATGAGCTTC 57.675 47.619 0.00 0.00 34.27 3.86
1795 1951 2.634453 TCTGAGTTCCACATGAGCTTCA 59.366 45.455 0.00 0.00 34.27 3.02
1796 1952 3.071457 TCTGAGTTCCACATGAGCTTCAA 59.929 43.478 0.00 0.00 34.27 2.69
1797 1953 3.817084 CTGAGTTCCACATGAGCTTCAAA 59.183 43.478 0.00 0.00 34.27 2.69
1798 1954 4.401022 TGAGTTCCACATGAGCTTCAAAT 58.599 39.130 0.00 0.00 34.27 2.32
1799 1955 4.828939 TGAGTTCCACATGAGCTTCAAATT 59.171 37.500 0.00 0.00 34.27 1.82
1800 1956 5.302568 TGAGTTCCACATGAGCTTCAAATTT 59.697 36.000 0.00 0.00 34.27 1.82
1801 1957 5.535333 AGTTCCACATGAGCTTCAAATTTG 58.465 37.500 12.15 12.15 28.90 2.32
1802 1958 5.069516 AGTTCCACATGAGCTTCAAATTTGT 59.930 36.000 17.47 0.00 28.90 2.83
1803 1959 4.873817 TCCACATGAGCTTCAAATTTGTG 58.126 39.130 17.47 12.50 34.91 3.33
1804 1960 4.583907 TCCACATGAGCTTCAAATTTGTGA 59.416 37.500 17.47 7.34 36.36 3.58
1805 1961 4.682860 CCACATGAGCTTCAAATTTGTGAC 59.317 41.667 17.47 8.23 36.36 3.67
1806 1962 5.283294 CACATGAGCTTCAAATTTGTGACA 58.717 37.500 17.47 14.00 36.36 3.58
1807 1963 5.749588 CACATGAGCTTCAAATTTGTGACAA 59.250 36.000 17.47 0.00 36.36 3.18
1808 1964 6.256104 CACATGAGCTTCAAATTTGTGACAAA 59.744 34.615 13.66 13.66 36.36 2.83
1809 1965 6.817641 ACATGAGCTTCAAATTTGTGACAAAA 59.182 30.769 15.31 3.16 0.00 2.44
1810 1966 7.496591 ACATGAGCTTCAAATTTGTGACAAAAT 59.503 29.630 15.31 3.50 0.00 1.82
1811 1967 7.467557 TGAGCTTCAAATTTGTGACAAAATC 57.532 32.000 15.31 6.37 0.00 2.17
1812 1968 7.267128 TGAGCTTCAAATTTGTGACAAAATCT 58.733 30.769 15.31 4.85 0.00 2.40
1813 1969 7.765360 TGAGCTTCAAATTTGTGACAAAATCTT 59.235 29.630 15.31 6.25 0.00 2.40
1814 1970 8.496707 AGCTTCAAATTTGTGACAAAATCTTT 57.503 26.923 15.31 8.41 0.00 2.52
1815 1971 8.392612 AGCTTCAAATTTGTGACAAAATCTTTG 58.607 29.630 20.94 20.94 0.00 2.77
1816 1972 8.177013 GCTTCAAATTTGTGACAAAATCTTTGT 58.823 29.630 23.68 4.50 34.97 2.83
1822 1978 8.955061 ATTTGTGACAAAATCTTTGTATCTCG 57.045 30.769 15.31 0.00 31.96 4.04
1823 1979 7.490962 TTGTGACAAAATCTTTGTATCTCGT 57.509 32.000 4.82 0.00 31.96 4.18
1824 1980 8.596271 TTGTGACAAAATCTTTGTATCTCGTA 57.404 30.769 4.82 0.00 31.96 3.43
1825 1981 8.771920 TGTGACAAAATCTTTGTATCTCGTAT 57.228 30.769 4.82 0.00 31.96 3.06
1826 1982 8.655970 TGTGACAAAATCTTTGTATCTCGTATG 58.344 33.333 4.82 0.00 31.96 2.39
1827 1983 8.869897 GTGACAAAATCTTTGTATCTCGTATGA 58.130 33.333 4.82 0.00 31.96 2.15
1828 1984 9.430623 TGACAAAATCTTTGTATCTCGTATGAA 57.569 29.630 4.82 0.00 31.96 2.57
1834 1990 7.643528 TCTTTGTATCTCGTATGAATCATGC 57.356 36.000 5.91 3.36 0.00 4.06
1835 1991 7.436933 TCTTTGTATCTCGTATGAATCATGCT 58.563 34.615 5.91 0.00 0.00 3.79
1836 1992 7.596621 TCTTTGTATCTCGTATGAATCATGCTC 59.403 37.037 5.91 0.00 0.00 4.26
1837 1993 6.581171 TGTATCTCGTATGAATCATGCTCT 57.419 37.500 5.91 0.00 0.00 4.09
1838 1994 6.986250 TGTATCTCGTATGAATCATGCTCTT 58.014 36.000 5.91 0.00 0.00 2.85
1839 1995 7.087007 TGTATCTCGTATGAATCATGCTCTTC 58.913 38.462 5.91 0.00 0.00 2.87
1840 1996 5.520376 TCTCGTATGAATCATGCTCTTCA 57.480 39.130 5.91 7.38 35.95 3.02
1841 1997 5.906073 TCTCGTATGAATCATGCTCTTCAA 58.094 37.500 5.91 0.00 35.20 2.69
1842 1998 6.340522 TCTCGTATGAATCATGCTCTTCAAA 58.659 36.000 5.91 0.00 35.20 2.69
1843 1999 6.818142 TCTCGTATGAATCATGCTCTTCAAAA 59.182 34.615 5.91 0.61 35.20 2.44
1844 2000 7.496920 TCTCGTATGAATCATGCTCTTCAAAAT 59.503 33.333 5.91 0.00 35.20 1.82
1845 2001 7.988737 TCGTATGAATCATGCTCTTCAAAATT 58.011 30.769 5.91 0.00 35.20 1.82
1846 2002 8.461222 TCGTATGAATCATGCTCTTCAAAATTT 58.539 29.630 5.91 0.00 35.20 1.82
1847 2003 9.079833 CGTATGAATCATGCTCTTCAAAATTTT 57.920 29.630 5.91 0.00 35.20 1.82
1850 2006 9.667107 ATGAATCATGCTCTTCAAAATTTTCAT 57.333 25.926 0.00 0.00 35.20 2.57
1851 2007 9.146984 TGAATCATGCTCTTCAAAATTTTCATC 57.853 29.630 0.00 0.00 0.00 2.92
1852 2008 9.367444 GAATCATGCTCTTCAAAATTTTCATCT 57.633 29.630 0.00 0.00 0.00 2.90
1855 2011 9.234827 TCATGCTCTTCAAAATTTTCATCTAGA 57.765 29.630 0.00 0.00 0.00 2.43
1856 2012 9.850628 CATGCTCTTCAAAATTTTCATCTAGAA 57.149 29.630 0.00 0.12 0.00 2.10
1858 2014 9.903682 TGCTCTTCAAAATTTTCATCTAGAAAG 57.096 29.630 0.00 0.00 46.24 2.62
1862 2018 9.903682 CTTCAAAATTTTCATCTAGAAAGAGCA 57.096 29.630 0.00 0.00 46.24 4.26
1863 2019 9.903682 TTCAAAATTTTCATCTAGAAAGAGCAG 57.096 29.630 0.00 0.00 46.24 4.24
1864 2020 8.025445 TCAAAATTTTCATCTAGAAAGAGCAGC 58.975 33.333 0.00 0.00 46.24 5.25
1865 2021 7.458409 AAATTTTCATCTAGAAAGAGCAGCA 57.542 32.000 0.00 0.00 46.24 4.41
1866 2022 6.680874 ATTTTCATCTAGAAAGAGCAGCAG 57.319 37.500 0.00 0.00 46.24 4.24
1867 2023 4.815533 TTCATCTAGAAAGAGCAGCAGT 57.184 40.909 0.00 0.00 34.49 4.40
1868 2024 5.921962 TTCATCTAGAAAGAGCAGCAGTA 57.078 39.130 0.00 0.00 34.49 2.74
1869 2025 6.477053 TTCATCTAGAAAGAGCAGCAGTAT 57.523 37.500 0.00 0.00 34.49 2.12
1870 2026 6.477053 TCATCTAGAAAGAGCAGCAGTATT 57.523 37.500 0.00 0.00 34.49 1.89
1871 2027 6.279123 TCATCTAGAAAGAGCAGCAGTATTG 58.721 40.000 0.00 0.00 34.49 1.90
1872 2028 5.667539 TCTAGAAAGAGCAGCAGTATTGT 57.332 39.130 0.00 0.00 0.00 2.71
1873 2029 6.775594 TCTAGAAAGAGCAGCAGTATTGTA 57.224 37.500 0.00 0.00 0.00 2.41
1874 2030 7.170393 TCTAGAAAGAGCAGCAGTATTGTAA 57.830 36.000 0.00 0.00 0.00 2.41
1875 2031 7.611770 TCTAGAAAGAGCAGCAGTATTGTAAA 58.388 34.615 0.00 0.00 0.00 2.01
1876 2032 6.734104 AGAAAGAGCAGCAGTATTGTAAAG 57.266 37.500 0.00 0.00 0.00 1.85
1877 2033 6.234177 AGAAAGAGCAGCAGTATTGTAAAGT 58.766 36.000 0.00 0.00 0.00 2.66
1878 2034 6.370166 AGAAAGAGCAGCAGTATTGTAAAGTC 59.630 38.462 0.00 0.00 0.00 3.01
1879 2035 5.152623 AGAGCAGCAGTATTGTAAAGTCA 57.847 39.130 0.00 0.00 0.00 3.41
1880 2036 5.551233 AGAGCAGCAGTATTGTAAAGTCAA 58.449 37.500 0.00 0.00 0.00 3.18
1881 2037 6.176183 AGAGCAGCAGTATTGTAAAGTCAAT 58.824 36.000 0.00 0.00 40.50 2.57
1882 2038 6.656693 AGAGCAGCAGTATTGTAAAGTCAATT 59.343 34.615 0.00 0.00 38.68 2.32
1883 2039 6.846350 AGCAGCAGTATTGTAAAGTCAATTC 58.154 36.000 0.00 0.00 38.68 2.17
1884 2040 5.734498 GCAGCAGTATTGTAAAGTCAATTCG 59.266 40.000 0.00 0.00 38.68 3.34
1885 2041 6.620733 GCAGCAGTATTGTAAAGTCAATTCGT 60.621 38.462 0.00 0.00 38.68 3.85
1886 2042 7.298122 CAGCAGTATTGTAAAGTCAATTCGTT 58.702 34.615 0.00 0.00 38.68 3.85
1887 2043 8.440059 CAGCAGTATTGTAAAGTCAATTCGTTA 58.560 33.333 0.00 0.00 38.68 3.18
1888 2044 8.656849 AGCAGTATTGTAAAGTCAATTCGTTAG 58.343 33.333 0.00 0.00 38.68 2.34
1889 2045 8.440833 GCAGTATTGTAAAGTCAATTCGTTAGT 58.559 33.333 0.00 0.00 38.68 2.24
1894 2050 8.524870 TTGTAAAGTCAATTCGTTAGTACTCC 57.475 34.615 0.00 0.00 0.00 3.85
1895 2051 7.092716 TGTAAAGTCAATTCGTTAGTACTCCC 58.907 38.462 0.00 0.00 0.00 4.30
1896 2052 5.997384 AAGTCAATTCGTTAGTACTCCCT 57.003 39.130 0.00 0.00 0.00 4.20
1897 2053 5.579564 AGTCAATTCGTTAGTACTCCCTC 57.420 43.478 0.00 0.00 0.00 4.30
1898 2054 4.401837 AGTCAATTCGTTAGTACTCCCTCC 59.598 45.833 0.00 0.00 0.00 4.30
1899 2055 3.379372 TCAATTCGTTAGTACTCCCTCCG 59.621 47.826 0.00 0.00 0.00 4.63
1900 2056 2.496899 TTCGTTAGTACTCCCTCCGT 57.503 50.000 0.00 0.00 0.00 4.69
1901 2057 3.627395 TTCGTTAGTACTCCCTCCGTA 57.373 47.619 0.00 0.00 0.00 4.02
1902 2058 3.627395 TCGTTAGTACTCCCTCCGTAA 57.373 47.619 0.00 0.00 0.00 3.18
1903 2059 3.950397 TCGTTAGTACTCCCTCCGTAAA 58.050 45.455 0.00 0.00 0.00 2.01
1904 2060 4.526970 TCGTTAGTACTCCCTCCGTAAAT 58.473 43.478 0.00 0.00 0.00 1.40
1905 2061 4.336433 TCGTTAGTACTCCCTCCGTAAATG 59.664 45.833 0.00 0.00 0.00 2.32
1906 2062 4.366586 GTTAGTACTCCCTCCGTAAATGC 58.633 47.826 0.00 0.00 0.00 3.56
1907 2063 1.407979 AGTACTCCCTCCGTAAATGCG 59.592 52.381 0.00 0.00 0.00 4.73
1908 2064 1.135721 GTACTCCCTCCGTAAATGCGT 59.864 52.381 0.00 0.00 0.00 5.24
1909 2065 0.611714 ACTCCCTCCGTAAATGCGTT 59.388 50.000 0.00 0.00 0.00 4.84
1910 2066 1.002773 ACTCCCTCCGTAAATGCGTTT 59.997 47.619 9.25 9.25 0.00 3.60
1911 2067 2.234414 ACTCCCTCCGTAAATGCGTTTA 59.766 45.455 7.03 7.03 0.00 2.01
1912 2068 3.264104 CTCCCTCCGTAAATGCGTTTAA 58.736 45.455 12.62 0.00 31.94 1.52
1913 2069 3.672808 TCCCTCCGTAAATGCGTTTAAA 58.327 40.909 12.62 1.72 31.94 1.52
1914 2070 4.263435 TCCCTCCGTAAATGCGTTTAAAT 58.737 39.130 12.62 0.00 31.94 1.40
1915 2071 4.333372 TCCCTCCGTAAATGCGTTTAAATC 59.667 41.667 12.62 0.59 31.94 2.17
1916 2072 4.095185 CCCTCCGTAAATGCGTTTAAATCA 59.905 41.667 12.62 0.00 31.94 2.57
1917 2073 5.025826 CCTCCGTAAATGCGTTTAAATCAC 58.974 41.667 12.62 2.22 31.94 3.06
1918 2074 5.163794 CCTCCGTAAATGCGTTTAAATCACT 60.164 40.000 12.62 0.00 31.94 3.41
1919 2075 6.036300 CCTCCGTAAATGCGTTTAAATCACTA 59.964 38.462 12.62 0.00 31.94 2.74
1920 2076 7.361889 TCCGTAAATGCGTTTAAATCACTAA 57.638 32.000 12.62 0.00 31.94 2.24
1921 2077 7.235777 TCCGTAAATGCGTTTAAATCACTAAC 58.764 34.615 12.62 0.00 31.94 2.34
1922 2078 7.016466 CCGTAAATGCGTTTAAATCACTAACA 58.984 34.615 12.62 0.00 31.94 2.41
1923 2079 7.215568 CCGTAAATGCGTTTAAATCACTAACAG 59.784 37.037 12.62 0.00 31.94 3.16
1924 2080 7.953173 CGTAAATGCGTTTAAATCACTAACAGA 59.047 33.333 12.62 0.00 31.94 3.41
1925 2081 9.262472 GTAAATGCGTTTAAATCACTAACAGAG 57.738 33.333 12.62 0.00 31.94 3.35
1926 2082 7.435068 AATGCGTTTAAATCACTAACAGAGT 57.565 32.000 0.00 0.00 39.82 3.24
1936 2092 3.194005 ACTAACAGAGTGTTGGGTGTG 57.806 47.619 7.89 0.00 42.22 3.82
1937 2093 2.158813 ACTAACAGAGTGTTGGGTGTGG 60.159 50.000 7.89 0.00 42.22 4.17
1938 2094 0.106719 AACAGAGTGTTGGGTGTGGG 60.107 55.000 0.00 0.00 39.45 4.61
1939 2095 0.986019 ACAGAGTGTTGGGTGTGGGA 60.986 55.000 0.00 0.00 0.00 4.37
1940 2096 0.401738 CAGAGTGTTGGGTGTGGGAT 59.598 55.000 0.00 0.00 0.00 3.85
1941 2097 1.149101 AGAGTGTTGGGTGTGGGATT 58.851 50.000 0.00 0.00 0.00 3.01
1942 2098 1.073923 AGAGTGTTGGGTGTGGGATTC 59.926 52.381 0.00 0.00 0.00 2.52
1943 2099 0.112412 AGTGTTGGGTGTGGGATTCC 59.888 55.000 0.00 0.00 0.00 3.01
1944 2100 1.074072 TGTTGGGTGTGGGATTCCG 59.926 57.895 0.00 0.00 35.24 4.30
1945 2101 1.677633 GTTGGGTGTGGGATTCCGG 60.678 63.158 0.00 0.00 35.24 5.14
1946 2102 3.577334 TTGGGTGTGGGATTCCGGC 62.577 63.158 0.00 0.00 35.24 6.13
1947 2103 4.041762 GGGTGTGGGATTCCGGCA 62.042 66.667 0.00 0.00 35.24 5.69
1948 2104 2.034999 GGTGTGGGATTCCGGCAA 59.965 61.111 0.00 0.00 35.24 4.52
1949 2105 1.605165 GGTGTGGGATTCCGGCAAA 60.605 57.895 0.00 0.00 35.24 3.68
1950 2106 1.584495 GTGTGGGATTCCGGCAAAC 59.416 57.895 0.00 0.00 35.24 2.93
1951 2107 1.605165 TGTGGGATTCCGGCAAACC 60.605 57.895 0.00 0.13 35.24 3.27
1952 2108 2.036572 TGGGATTCCGGCAAACCC 59.963 61.111 18.84 18.84 40.79 4.11
1953 2109 2.359011 GGGATTCCGGCAAACCCT 59.641 61.111 18.56 0.00 37.75 4.34
1954 2110 1.304962 GGGATTCCGGCAAACCCTT 60.305 57.895 18.56 0.00 37.75 3.95
1955 2111 0.033894 GGGATTCCGGCAAACCCTTA 60.034 55.000 18.56 0.00 37.75 2.69
2106 2309 2.707791 CCTCTTGGGCTGATGATAAGGA 59.292 50.000 0.00 0.00 0.00 3.36
2113 2316 4.662179 TGGGCTGATGATAAGGAGAAGAAT 59.338 41.667 0.00 0.00 0.00 2.40
2137 2340 1.694150 CTCCTGAGGTTGAGGTGTTCA 59.306 52.381 0.00 0.00 31.85 3.18
2159 2362 1.904378 GGCTAGGGTAGGCTCTCGG 60.904 68.421 0.00 0.00 46.78 4.63
2213 2421 0.252696 AGATGCCCCTACTGTGGTGA 60.253 55.000 0.00 0.00 0.00 4.02
2229 2437 8.278729 ACTGTGGTGACTAGTTCTACTTATAC 57.721 38.462 0.00 0.00 0.00 1.47
2238 2446 4.880164 AGTTCTACTTATACAGGCCCTGA 58.120 43.478 19.90 1.01 35.18 3.86
2270 2478 1.807814 ATATTGAGCGGGAAGGGAGT 58.192 50.000 0.00 0.00 0.00 3.85
2298 2507 1.540435 GCGGGCAAATTTGAAGGGGA 61.540 55.000 22.31 0.00 0.00 4.81
2331 2540 2.716217 AGCTATCCTGACAAAAGTGGC 58.284 47.619 0.00 0.00 0.00 5.01
2360 2569 0.036010 CGAAAGGCTCTGGTGGTGAT 60.036 55.000 0.00 0.00 0.00 3.06
2558 2767 1.141665 CCGATCGTCATGGCTCACA 59.858 57.895 15.09 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.101448 CTTGGGGTCGGCCTCTGG 62.101 72.222 7.83 0.00 35.83 3.86
18 19 3.003173 TCTTGGGGTCGGCCTCTG 61.003 66.667 7.83 0.00 35.83 3.35
19 20 3.003763 GTCTTGGGGTCGGCCTCT 61.004 66.667 7.83 0.00 35.83 3.69
20 21 4.452733 CGTCTTGGGGTCGGCCTC 62.453 72.222 5.77 0.30 35.21 4.70
22 23 2.453379 TAAACGTCTTGGGGTCGGCC 62.453 60.000 0.00 0.00 0.00 6.13
23 24 0.603439 TTAAACGTCTTGGGGTCGGC 60.603 55.000 0.00 0.00 0.00 5.54
24 25 1.881591 TTTAAACGTCTTGGGGTCGG 58.118 50.000 0.00 0.00 0.00 4.79
25 26 3.499157 TGAATTTAAACGTCTTGGGGTCG 59.501 43.478 0.00 0.00 0.00 4.79
26 27 5.441709 TTGAATTTAAACGTCTTGGGGTC 57.558 39.130 0.00 0.00 0.00 4.46
27 28 5.452216 GGTTTGAATTTAAACGTCTTGGGGT 60.452 40.000 16.81 0.00 40.56 4.95
28 29 4.986034 GGTTTGAATTTAAACGTCTTGGGG 59.014 41.667 16.81 0.00 40.56 4.96
29 30 5.689961 CAGGTTTGAATTTAAACGTCTTGGG 59.310 40.000 15.58 4.06 40.56 4.12
30 31 6.416750 GTCAGGTTTGAATTTAAACGTCTTGG 59.583 38.462 15.58 7.38 40.56 3.61
31 32 6.970043 TGTCAGGTTTGAATTTAAACGTCTTG 59.030 34.615 15.58 12.26 40.56 3.02
32 33 7.090953 TGTCAGGTTTGAATTTAAACGTCTT 57.909 32.000 15.58 2.72 40.56 3.01
33 34 6.687081 TGTCAGGTTTGAATTTAAACGTCT 57.313 33.333 15.58 8.01 40.56 4.18
34 35 7.924103 AATGTCAGGTTTGAATTTAAACGTC 57.076 32.000 15.58 8.48 40.56 4.34
35 36 7.436970 GGAAATGTCAGGTTTGAATTTAAACGT 59.563 33.333 16.81 15.12 40.56 3.99
36 37 7.095816 GGGAAATGTCAGGTTTGAATTTAAACG 60.096 37.037 16.81 6.97 40.56 3.60
37 38 7.095816 CGGGAAATGTCAGGTTTGAATTTAAAC 60.096 37.037 15.50 15.50 39.28 2.01
38 39 6.926272 CGGGAAATGTCAGGTTTGAATTTAAA 59.074 34.615 0.00 0.00 34.49 1.52
39 40 6.451393 CGGGAAATGTCAGGTTTGAATTTAA 58.549 36.000 0.00 0.00 34.49 1.52
40 41 5.565834 GCGGGAAATGTCAGGTTTGAATTTA 60.566 40.000 0.00 0.00 34.49 1.40
41 42 4.799255 GCGGGAAATGTCAGGTTTGAATTT 60.799 41.667 0.00 0.00 34.49 1.82
42 43 3.306019 GCGGGAAATGTCAGGTTTGAATT 60.306 43.478 0.00 0.00 34.49 2.17
43 44 2.231235 GCGGGAAATGTCAGGTTTGAAT 59.769 45.455 0.00 0.00 34.49 2.57
44 45 1.611491 GCGGGAAATGTCAGGTTTGAA 59.389 47.619 0.00 0.00 34.49 2.69
45 46 1.202879 AGCGGGAAATGTCAGGTTTGA 60.203 47.619 0.00 0.00 0.00 2.69
46 47 1.247567 AGCGGGAAATGTCAGGTTTG 58.752 50.000 0.00 0.00 0.00 2.93
47 48 2.433436 GTAGCGGGAAATGTCAGGTTT 58.567 47.619 0.00 0.00 0.00 3.27
48 49 1.339727 GGTAGCGGGAAATGTCAGGTT 60.340 52.381 0.00 0.00 0.00 3.50
49 50 0.252197 GGTAGCGGGAAATGTCAGGT 59.748 55.000 0.00 0.00 0.00 4.00
50 51 0.463833 GGGTAGCGGGAAATGTCAGG 60.464 60.000 0.00 0.00 0.00 3.86
51 52 0.251916 TGGGTAGCGGGAAATGTCAG 59.748 55.000 0.00 0.00 0.00 3.51
52 53 0.693622 TTGGGTAGCGGGAAATGTCA 59.306 50.000 0.00 0.00 0.00 3.58
53 54 1.828979 TTTGGGTAGCGGGAAATGTC 58.171 50.000 0.00 0.00 0.00 3.06
54 55 2.296073 TTTTGGGTAGCGGGAAATGT 57.704 45.000 0.00 0.00 0.00 2.71
78 79 2.100631 GTGATCGCCGGACTTGTGG 61.101 63.158 5.05 0.00 0.00 4.17
79 80 2.100631 GGTGATCGCCGGACTTGTG 61.101 63.158 10.09 0.00 0.00 3.33
80 81 1.899437 ATGGTGATCGCCGGACTTGT 61.899 55.000 20.16 0.00 0.00 3.16
81 82 1.153369 ATGGTGATCGCCGGACTTG 60.153 57.895 20.16 0.00 0.00 3.16
82 83 1.153369 CATGGTGATCGCCGGACTT 60.153 57.895 20.16 0.15 0.00 3.01
83 84 2.501128 CATGGTGATCGCCGGACT 59.499 61.111 20.16 2.46 0.00 3.85
84 85 3.272334 GCATGGTGATCGCCGGAC 61.272 66.667 20.16 8.05 0.00 4.79
85 86 4.545706 GGCATGGTGATCGCCGGA 62.546 66.667 20.16 4.22 35.79 5.14
88 89 2.438254 TGTGGCATGGTGATCGCC 60.438 61.111 18.84 18.84 46.43 5.54
89 90 1.308069 AACTGTGGCATGGTGATCGC 61.308 55.000 0.00 0.00 0.00 4.58
90 91 0.729116 GAACTGTGGCATGGTGATCG 59.271 55.000 0.00 0.00 0.00 3.69
91 92 0.729116 CGAACTGTGGCATGGTGATC 59.271 55.000 0.00 0.00 0.00 2.92
92 93 0.677731 CCGAACTGTGGCATGGTGAT 60.678 55.000 0.00 0.00 0.00 3.06
93 94 1.302431 CCGAACTGTGGCATGGTGA 60.302 57.895 0.00 0.00 0.00 4.02
94 95 3.266964 CCGAACTGTGGCATGGTG 58.733 61.111 0.00 0.00 0.00 4.17
407 472 3.366739 GAAGTACACGGCCCCTCGG 62.367 68.421 0.00 0.00 0.00 4.63
438 503 0.031111 TCTCCCCTTCATCCGGACAT 60.031 55.000 6.12 0.00 0.00 3.06
439 504 0.687757 CTCTCCCCTTCATCCGGACA 60.688 60.000 6.12 0.00 0.00 4.02
441 506 1.075226 CCTCTCCCCTTCATCCGGA 60.075 63.158 6.61 6.61 0.00 5.14
449 516 1.031112 ATTCTCCTCCCTCTCCCCTT 58.969 55.000 0.00 0.00 0.00 3.95
617 709 1.614241 AATAGCTGGCGAACCCGAGT 61.614 55.000 0.00 0.00 38.22 4.18
630 722 1.328279 GCCGGGCCAAAATAATAGCT 58.672 50.000 8.12 0.00 0.00 3.32
663 760 3.771160 GGTCCAGTCGCGTCCCAT 61.771 66.667 5.77 0.00 0.00 4.00
668 767 0.601841 AAAAATCGGTCCAGTCGCGT 60.602 50.000 5.77 0.00 0.00 6.01
692 791 1.159285 GGCTACTTTTTAACGCCGGT 58.841 50.000 1.90 0.00 0.00 5.28
699 798 4.828829 CCGGAGAAGAGGCTACTTTTTAA 58.171 43.478 0.00 0.00 0.00 1.52
727 826 4.267452 CGAGAAGCTTCAACTTAGAGCATC 59.733 45.833 27.57 10.91 0.00 3.91
728 827 4.180057 CGAGAAGCTTCAACTTAGAGCAT 58.820 43.478 27.57 2.60 0.00 3.79
729 828 3.005897 ACGAGAAGCTTCAACTTAGAGCA 59.994 43.478 27.57 0.00 0.00 4.26
730 829 3.580731 ACGAGAAGCTTCAACTTAGAGC 58.419 45.455 27.57 0.00 0.00 4.09
731 830 4.082463 AGGACGAGAAGCTTCAACTTAGAG 60.082 45.833 27.57 11.42 0.00 2.43
732 831 3.827302 AGGACGAGAAGCTTCAACTTAGA 59.173 43.478 27.57 0.00 0.00 2.10
756 855 2.875933 TGAGTTGGCTCGTTTTGGTTAG 59.124 45.455 0.00 0.00 44.48 2.34
780 887 7.112984 ACAGCAACTCGATTATTTTTCGTTTTC 59.887 33.333 0.00 0.00 37.82 2.29
785 892 7.234384 AGTAACAGCAACTCGATTATTTTTCG 58.766 34.615 0.00 0.00 37.94 3.46
827 937 0.456312 CACGCGTGTCCTCTAGAACC 60.456 60.000 30.50 0.00 0.00 3.62
832 942 1.303074 ACTCCACGCGTGTCCTCTA 60.303 57.895 34.81 13.63 0.00 2.43
878 988 2.126189 GGGCACGTGTACTCGGAC 60.126 66.667 18.38 11.62 34.94 4.79
944 1054 1.338960 TGGATGAATGTGAAGCGCTGA 60.339 47.619 12.58 0.00 0.00 4.26
985 1095 3.861840 TCTACGCTGGTAACTACGTACT 58.138 45.455 2.34 0.00 44.84 2.73
1066 1183 3.680937 TCGCTAAAATCAAACCTACACGG 59.319 43.478 0.00 0.00 39.35 4.94
1072 1189 2.749621 CTGGCTCGCTAAAATCAAACCT 59.250 45.455 0.00 0.00 0.00 3.50
1086 1203 2.123077 ATCCCTCCCTCTGGCTCG 60.123 66.667 0.00 0.00 0.00 5.03
1093 1210 3.883549 GCCCTGCATCCCTCCCTC 61.884 72.222 0.00 0.00 0.00 4.30
1565 1693 1.068895 CCAAGCCAGTCACATGCAAAA 59.931 47.619 0.00 0.00 0.00 2.44
1571 1699 1.636148 ATTTGCCAAGCCAGTCACAT 58.364 45.000 0.00 0.00 0.00 3.21
1581 1714 5.753921 GGTACTACACTAGCTATTTGCCAAG 59.246 44.000 0.00 0.00 44.23 3.61
1595 1728 5.093849 ACAAACACACAAGGTACTACACT 57.906 39.130 0.00 0.00 38.49 3.55
1598 1731 5.050837 CGGTAACAAACACACAAGGTACTAC 60.051 44.000 0.00 0.00 38.49 2.73
1599 1732 5.049167 CGGTAACAAACACACAAGGTACTA 58.951 41.667 0.00 0.00 38.49 1.82
1657 1800 9.161629 ACTCATTTCACGAATCACAACATAATA 57.838 29.630 0.00 0.00 0.00 0.98
1658 1801 8.044060 ACTCATTTCACGAATCACAACATAAT 57.956 30.769 0.00 0.00 0.00 1.28
1659 1802 7.433708 ACTCATTTCACGAATCACAACATAA 57.566 32.000 0.00 0.00 0.00 1.90
1691 1838 2.738846 CTCATTTCACACTTCCACTCGG 59.261 50.000 0.00 0.00 0.00 4.63
1692 1839 3.393800 ACTCATTTCACACTTCCACTCG 58.606 45.455 0.00 0.00 0.00 4.18
1693 1840 3.430218 CGACTCATTTCACACTTCCACTC 59.570 47.826 0.00 0.00 0.00 3.51
1694 1841 3.393800 CGACTCATTTCACACTTCCACT 58.606 45.455 0.00 0.00 0.00 4.00
1696 1843 2.143122 GCGACTCATTTCACACTTCCA 58.857 47.619 0.00 0.00 0.00 3.53
1698 1845 8.480853 GTTATATAGCGACTCATTTCACACTTC 58.519 37.037 0.00 0.00 0.00 3.01
1699 1846 7.167635 CGTTATATAGCGACTCATTTCACACTT 59.832 37.037 13.10 0.00 31.27 3.16
1700 1847 6.637254 CGTTATATAGCGACTCATTTCACACT 59.363 38.462 13.10 0.00 31.27 3.55
1701 1848 6.129168 CCGTTATATAGCGACTCATTTCACAC 60.129 42.308 19.14 0.00 31.27 3.82
1702 1849 5.918576 CCGTTATATAGCGACTCATTTCACA 59.081 40.000 19.14 0.00 31.27 3.58
1704 1851 6.206048 TCTCCGTTATATAGCGACTCATTTCA 59.794 38.462 19.14 0.00 31.27 2.69
1705 1852 6.609533 TCTCCGTTATATAGCGACTCATTTC 58.390 40.000 19.14 0.00 31.27 2.17
1706 1853 6.570672 TCTCCGTTATATAGCGACTCATTT 57.429 37.500 19.14 0.00 31.27 2.32
1707 1854 6.183360 GGATCTCCGTTATATAGCGACTCATT 60.183 42.308 19.14 0.77 31.27 2.57
1708 1855 5.297278 GGATCTCCGTTATATAGCGACTCAT 59.703 44.000 19.14 6.50 31.27 2.90
1709 1856 4.634883 GGATCTCCGTTATATAGCGACTCA 59.365 45.833 19.14 2.24 31.27 3.41
1710 1857 4.035441 GGGATCTCCGTTATATAGCGACTC 59.965 50.000 19.14 9.91 36.71 3.36
1711 1858 3.946558 GGGATCTCCGTTATATAGCGACT 59.053 47.826 19.14 2.19 36.71 4.18
1712 1859 3.946558 AGGGATCTCCGTTATATAGCGAC 59.053 47.826 19.14 6.19 41.52 5.19
1713 1860 4.080469 AGAGGGATCTCCGTTATATAGCGA 60.080 45.833 19.14 5.91 40.83 4.93
1714 1861 4.035792 CAGAGGGATCTCCGTTATATAGCG 59.964 50.000 11.61 11.61 40.83 4.26
1715 1862 4.339814 CCAGAGGGATCTCCGTTATATAGC 59.660 50.000 0.00 0.00 40.83 2.97
1716 1863 5.511363 ACCAGAGGGATCTCCGTTATATAG 58.489 45.833 0.00 0.00 40.83 1.31
1717 1864 5.531753 ACCAGAGGGATCTCCGTTATATA 57.468 43.478 0.00 0.00 40.83 0.86
1718 1865 4.405756 ACCAGAGGGATCTCCGTTATAT 57.594 45.455 0.00 0.00 40.83 0.86
1720 1867 2.777459 ACCAGAGGGATCTCCGTTAT 57.223 50.000 0.00 0.00 40.83 1.89
1722 1869 1.196012 GAACCAGAGGGATCTCCGTT 58.804 55.000 0.00 0.00 40.83 4.44
1723 1870 0.336737 AGAACCAGAGGGATCTCCGT 59.663 55.000 0.00 0.00 42.17 4.69
1724 1871 0.749649 CAGAACCAGAGGGATCTCCG 59.250 60.000 0.00 0.00 43.85 4.63
1725 1872 2.166907 TCAGAACCAGAGGGATCTCC 57.833 55.000 0.00 0.00 43.85 3.71
1726 1873 4.408596 AGAATTCAGAACCAGAGGGATCTC 59.591 45.833 8.44 0.00 43.85 2.75
1727 1874 4.163839 CAGAATTCAGAACCAGAGGGATCT 59.836 45.833 8.44 0.00 46.37 2.75
1733 1889 4.874966 GTCCATCAGAATTCAGAACCAGAG 59.125 45.833 8.44 0.00 0.00 3.35
1760 1916 3.788227 ACTCAGATACCCAAGTTGCAA 57.212 42.857 0.00 0.00 0.00 4.08
1763 1919 4.003648 GTGGAACTCAGATACCCAAGTTG 58.996 47.826 0.00 0.00 32.34 3.16
1768 1924 3.449918 TCATGTGGAACTCAGATACCCA 58.550 45.455 0.00 0.00 38.04 4.51
1769 1925 3.742640 GCTCATGTGGAACTCAGATACCC 60.743 52.174 0.00 0.00 38.04 3.69
1770 1926 3.133721 AGCTCATGTGGAACTCAGATACC 59.866 47.826 0.00 0.00 38.04 2.73
1771 1927 4.399004 AGCTCATGTGGAACTCAGATAC 57.601 45.455 0.00 0.00 38.04 2.24
1772 1928 4.467438 TGAAGCTCATGTGGAACTCAGATA 59.533 41.667 0.00 0.00 38.04 1.98
1773 1929 3.262660 TGAAGCTCATGTGGAACTCAGAT 59.737 43.478 0.00 0.00 38.04 2.90
1774 1930 2.634453 TGAAGCTCATGTGGAACTCAGA 59.366 45.455 0.00 0.00 38.04 3.27
1775 1931 3.049708 TGAAGCTCATGTGGAACTCAG 57.950 47.619 0.00 0.00 38.04 3.35
1776 1932 3.490439 TTGAAGCTCATGTGGAACTCA 57.510 42.857 0.00 0.00 38.04 3.41
1777 1933 5.382618 AATTTGAAGCTCATGTGGAACTC 57.617 39.130 0.00 0.00 38.04 3.01
1778 1934 5.069516 ACAAATTTGAAGCTCATGTGGAACT 59.930 36.000 24.64 0.00 38.04 3.01
1779 1935 5.176223 CACAAATTTGAAGCTCATGTGGAAC 59.824 40.000 24.64 0.00 32.79 3.62
1780 1936 5.068855 TCACAAATTTGAAGCTCATGTGGAA 59.931 36.000 24.64 0.00 35.50 3.53
1781 1937 4.583907 TCACAAATTTGAAGCTCATGTGGA 59.416 37.500 24.64 2.34 35.50 4.02
1782 1938 4.682860 GTCACAAATTTGAAGCTCATGTGG 59.317 41.667 24.64 0.00 35.50 4.17
1783 1939 5.283294 TGTCACAAATTTGAAGCTCATGTG 58.717 37.500 24.64 9.71 35.88 3.21
1784 1940 5.518848 TGTCACAAATTTGAAGCTCATGT 57.481 34.783 24.64 0.00 0.00 3.21
1785 1941 6.831727 TTTGTCACAAATTTGAAGCTCATG 57.168 33.333 24.64 10.36 0.00 3.07
1786 1942 7.929785 AGATTTTGTCACAAATTTGAAGCTCAT 59.070 29.630 24.64 7.91 0.00 2.90
1787 1943 7.267128 AGATTTTGTCACAAATTTGAAGCTCA 58.733 30.769 24.64 14.10 0.00 4.26
1788 1944 7.704789 AGATTTTGTCACAAATTTGAAGCTC 57.295 32.000 24.64 12.17 0.00 4.09
1789 1945 8.392612 CAAAGATTTTGTCACAAATTTGAAGCT 58.607 29.630 24.64 11.86 0.00 3.74
1790 1946 8.177013 ACAAAGATTTTGTCACAAATTTGAAGC 58.823 29.630 24.71 9.81 0.00 3.86
1796 1952 9.398170 CGAGATACAAAGATTTTGTCACAAATT 57.602 29.630 3.17 0.00 34.11 1.82
1797 1953 8.567948 ACGAGATACAAAGATTTTGTCACAAAT 58.432 29.630 3.17 0.00 34.11 2.32
1798 1954 7.925993 ACGAGATACAAAGATTTTGTCACAAA 58.074 30.769 10.17 0.00 34.11 2.83
1799 1955 7.490962 ACGAGATACAAAGATTTTGTCACAA 57.509 32.000 10.17 0.00 34.11 3.33
1800 1956 8.655970 CATACGAGATACAAAGATTTTGTCACA 58.344 33.333 10.17 0.00 34.11 3.58
1801 1957 8.869897 TCATACGAGATACAAAGATTTTGTCAC 58.130 33.333 10.17 6.67 34.11 3.67
1802 1958 8.996024 TCATACGAGATACAAAGATTTTGTCA 57.004 30.769 10.17 0.00 34.11 3.58
1808 1964 8.715998 GCATGATTCATACGAGATACAAAGATT 58.284 33.333 0.00 0.00 0.00 2.40
1809 1965 8.093307 AGCATGATTCATACGAGATACAAAGAT 58.907 33.333 0.00 0.00 0.00 2.40
1810 1966 7.436933 AGCATGATTCATACGAGATACAAAGA 58.563 34.615 0.00 0.00 0.00 2.52
1811 1967 7.598118 AGAGCATGATTCATACGAGATACAAAG 59.402 37.037 0.00 0.00 0.00 2.77
1812 1968 7.436933 AGAGCATGATTCATACGAGATACAAA 58.563 34.615 0.00 0.00 0.00 2.83
1813 1969 6.986250 AGAGCATGATTCATACGAGATACAA 58.014 36.000 0.00 0.00 0.00 2.41
1814 1970 6.581171 AGAGCATGATTCATACGAGATACA 57.419 37.500 0.00 0.00 0.00 2.29
1815 1971 7.087007 TGAAGAGCATGATTCATACGAGATAC 58.913 38.462 0.00 0.00 30.67 2.24
1816 1972 7.219484 TGAAGAGCATGATTCATACGAGATA 57.781 36.000 0.00 0.00 30.67 1.98
1817 1973 6.094193 TGAAGAGCATGATTCATACGAGAT 57.906 37.500 0.00 0.00 30.67 2.75
1818 1974 5.520376 TGAAGAGCATGATTCATACGAGA 57.480 39.130 0.00 0.00 30.67 4.04
1819 1975 6.594284 TTTGAAGAGCATGATTCATACGAG 57.406 37.500 0.00 0.00 35.47 4.18
1820 1976 6.983474 TTTTGAAGAGCATGATTCATACGA 57.017 33.333 0.00 0.00 35.47 3.43
1821 1977 8.624701 AAATTTTGAAGAGCATGATTCATACG 57.375 30.769 0.00 0.00 35.47 3.06
1824 1980 9.667107 ATGAAAATTTTGAAGAGCATGATTCAT 57.333 25.926 8.47 0.00 35.47 2.57
1825 1981 9.146984 GATGAAAATTTTGAAGAGCATGATTCA 57.853 29.630 8.47 0.21 33.73 2.57
1826 1982 9.367444 AGATGAAAATTTTGAAGAGCATGATTC 57.633 29.630 8.47 0.00 0.00 2.52
1829 1985 9.234827 TCTAGATGAAAATTTTGAAGAGCATGA 57.765 29.630 8.47 0.00 0.00 3.07
1830 1986 9.850628 TTCTAGATGAAAATTTTGAAGAGCATG 57.149 29.630 8.47 0.00 0.00 4.06
1832 1988 9.903682 CTTTCTAGATGAAAATTTTGAAGAGCA 57.096 29.630 8.47 0.00 43.25 4.26
1836 1992 9.903682 TGCTCTTTCTAGATGAAAATTTTGAAG 57.096 29.630 8.47 0.00 43.25 3.02
1837 1993 9.903682 CTGCTCTTTCTAGATGAAAATTTTGAA 57.096 29.630 8.47 1.72 43.25 2.69
1838 1994 8.025445 GCTGCTCTTTCTAGATGAAAATTTTGA 58.975 33.333 8.47 0.00 43.25 2.69
1839 1995 7.811236 TGCTGCTCTTTCTAGATGAAAATTTTG 59.189 33.333 8.47 0.00 43.25 2.44
1840 1996 7.889469 TGCTGCTCTTTCTAGATGAAAATTTT 58.111 30.769 2.28 2.28 43.25 1.82
1841 1997 7.176340 ACTGCTGCTCTTTCTAGATGAAAATTT 59.824 33.333 0.00 0.00 43.25 1.82
1842 1998 6.658391 ACTGCTGCTCTTTCTAGATGAAAATT 59.342 34.615 0.00 0.00 43.25 1.82
1843 1999 6.179040 ACTGCTGCTCTTTCTAGATGAAAAT 58.821 36.000 0.00 0.00 43.25 1.82
1844 2000 5.555017 ACTGCTGCTCTTTCTAGATGAAAA 58.445 37.500 0.00 0.00 43.25 2.29
1845 2001 5.157940 ACTGCTGCTCTTTCTAGATGAAA 57.842 39.130 0.00 0.00 41.85 2.69
1846 2002 4.815533 ACTGCTGCTCTTTCTAGATGAA 57.184 40.909 0.00 0.00 0.00 2.57
1847 2003 6.127225 ACAATACTGCTGCTCTTTCTAGATGA 60.127 38.462 0.00 0.00 0.00 2.92
1848 2004 6.047870 ACAATACTGCTGCTCTTTCTAGATG 58.952 40.000 0.00 0.00 0.00 2.90
1849 2005 6.232581 ACAATACTGCTGCTCTTTCTAGAT 57.767 37.500 0.00 0.00 0.00 1.98
1850 2006 5.667539 ACAATACTGCTGCTCTTTCTAGA 57.332 39.130 0.00 0.00 0.00 2.43
1851 2007 7.547370 ACTTTACAATACTGCTGCTCTTTCTAG 59.453 37.037 0.00 0.00 0.00 2.43
1852 2008 7.386851 ACTTTACAATACTGCTGCTCTTTCTA 58.613 34.615 0.00 0.00 0.00 2.10
1853 2009 6.234177 ACTTTACAATACTGCTGCTCTTTCT 58.766 36.000 0.00 0.00 0.00 2.52
1854 2010 6.147821 TGACTTTACAATACTGCTGCTCTTTC 59.852 38.462 0.00 0.00 0.00 2.62
1855 2011 5.997746 TGACTTTACAATACTGCTGCTCTTT 59.002 36.000 0.00 0.00 0.00 2.52
1856 2012 5.551233 TGACTTTACAATACTGCTGCTCTT 58.449 37.500 0.00 0.00 0.00 2.85
1857 2013 5.152623 TGACTTTACAATACTGCTGCTCT 57.847 39.130 0.00 0.00 0.00 4.09
1858 2014 5.862924 TTGACTTTACAATACTGCTGCTC 57.137 39.130 0.00 0.00 0.00 4.26
1859 2015 6.402550 CGAATTGACTTTACAATACTGCTGCT 60.403 38.462 0.00 0.00 39.19 4.24
1860 2016 5.734498 CGAATTGACTTTACAATACTGCTGC 59.266 40.000 0.00 0.00 39.19 5.25
1861 2017 6.831769 ACGAATTGACTTTACAATACTGCTG 58.168 36.000 0.00 0.00 39.19 4.41
1862 2018 7.435068 AACGAATTGACTTTACAATACTGCT 57.565 32.000 0.00 0.00 39.19 4.24
1863 2019 8.440833 ACTAACGAATTGACTTTACAATACTGC 58.559 33.333 0.00 0.00 39.19 4.40
1868 2024 9.148104 GGAGTACTAACGAATTGACTTTACAAT 57.852 33.333 0.00 0.00 41.43 2.71
1869 2025 7.599998 GGGAGTACTAACGAATTGACTTTACAA 59.400 37.037 0.00 0.00 0.00 2.41
1870 2026 7.039504 AGGGAGTACTAACGAATTGACTTTACA 60.040 37.037 0.00 0.00 0.00 2.41
1871 2027 7.318893 AGGGAGTACTAACGAATTGACTTTAC 58.681 38.462 0.00 0.00 0.00 2.01
1872 2028 7.363268 GGAGGGAGTACTAACGAATTGACTTTA 60.363 40.741 0.00 0.00 0.00 1.85
1873 2029 6.356186 AGGGAGTACTAACGAATTGACTTT 57.644 37.500 0.00 0.00 0.00 2.66
1874 2030 5.105432 GGAGGGAGTACTAACGAATTGACTT 60.105 44.000 0.00 0.00 0.00 3.01
1875 2031 4.401837 GGAGGGAGTACTAACGAATTGACT 59.598 45.833 0.00 0.00 0.00 3.41
1876 2032 4.680702 GGAGGGAGTACTAACGAATTGAC 58.319 47.826 0.00 0.00 0.00 3.18
1877 2033 3.379372 CGGAGGGAGTACTAACGAATTGA 59.621 47.826 0.00 0.00 0.00 2.57
1878 2034 3.129988 ACGGAGGGAGTACTAACGAATTG 59.870 47.826 0.00 0.00 0.00 2.32
1879 2035 3.359950 ACGGAGGGAGTACTAACGAATT 58.640 45.455 0.00 0.00 0.00 2.17
1880 2036 3.010200 ACGGAGGGAGTACTAACGAAT 57.990 47.619 0.00 0.00 0.00 3.34
1881 2037 2.496899 ACGGAGGGAGTACTAACGAA 57.503 50.000 0.00 0.00 0.00 3.85
1882 2038 3.627395 TTACGGAGGGAGTACTAACGA 57.373 47.619 0.00 0.00 0.00 3.85
1883 2039 4.604976 CATTTACGGAGGGAGTACTAACG 58.395 47.826 0.00 0.00 0.00 3.18
1884 2040 4.366586 GCATTTACGGAGGGAGTACTAAC 58.633 47.826 0.00 0.00 0.00 2.34
1885 2041 3.067180 CGCATTTACGGAGGGAGTACTAA 59.933 47.826 0.00 0.00 0.00 2.24
1886 2042 2.620115 CGCATTTACGGAGGGAGTACTA 59.380 50.000 0.00 0.00 0.00 1.82
1887 2043 1.407979 CGCATTTACGGAGGGAGTACT 59.592 52.381 0.00 0.00 0.00 2.73
1888 2044 1.135721 ACGCATTTACGGAGGGAGTAC 59.864 52.381 0.00 0.00 37.37 2.73
1889 2045 1.477553 ACGCATTTACGGAGGGAGTA 58.522 50.000 0.00 0.00 37.37 2.59
1890 2046 0.611714 AACGCATTTACGGAGGGAGT 59.388 50.000 0.00 0.00 37.37 3.85
1891 2047 1.734163 AAACGCATTTACGGAGGGAG 58.266 50.000 0.00 0.00 37.37 4.30
1892 2048 3.331478 TTAAACGCATTTACGGAGGGA 57.669 42.857 0.00 0.00 37.37 4.20
1893 2049 4.095185 TGATTTAAACGCATTTACGGAGGG 59.905 41.667 0.00 0.00 37.37 4.30
1894 2050 5.025826 GTGATTTAAACGCATTTACGGAGG 58.974 41.667 0.00 0.00 37.37 4.30
1895 2051 5.864986 AGTGATTTAAACGCATTTACGGAG 58.135 37.500 0.00 0.00 37.37 4.63
1896 2052 5.866335 AGTGATTTAAACGCATTTACGGA 57.134 34.783 0.00 0.00 37.37 4.69
1897 2053 7.016466 TGTTAGTGATTTAAACGCATTTACGG 58.984 34.615 0.00 0.00 37.37 4.02
1898 2054 7.953173 TCTGTTAGTGATTTAAACGCATTTACG 59.047 33.333 0.00 0.00 39.50 3.18
1899 2055 9.262472 CTCTGTTAGTGATTTAAACGCATTTAC 57.738 33.333 0.00 0.00 29.77 2.01
1900 2056 8.995220 ACTCTGTTAGTGATTTAAACGCATTTA 58.005 29.630 0.00 0.00 36.93 1.40
1901 2057 7.871853 ACTCTGTTAGTGATTTAAACGCATTT 58.128 30.769 0.00 0.00 36.93 2.32
1902 2058 7.435068 ACTCTGTTAGTGATTTAAACGCATT 57.565 32.000 0.00 0.00 36.93 3.56
1916 2072 2.158813 CCACACCCAACACTCTGTTAGT 60.159 50.000 0.00 0.00 38.77 2.24
1917 2073 2.494059 CCACACCCAACACTCTGTTAG 58.506 52.381 0.00 0.00 38.77 2.34
1918 2074 1.142060 CCCACACCCAACACTCTGTTA 59.858 52.381 0.00 0.00 38.77 2.41
1919 2075 0.106719 CCCACACCCAACACTCTGTT 60.107 55.000 0.00 0.00 42.08 3.16
1920 2076 0.986019 TCCCACACCCAACACTCTGT 60.986 55.000 0.00 0.00 0.00 3.41
1921 2077 0.401738 ATCCCACACCCAACACTCTG 59.598 55.000 0.00 0.00 0.00 3.35
1922 2078 1.073923 GAATCCCACACCCAACACTCT 59.926 52.381 0.00 0.00 0.00 3.24
1923 2079 1.534729 GAATCCCACACCCAACACTC 58.465 55.000 0.00 0.00 0.00 3.51
1924 2080 0.112412 GGAATCCCACACCCAACACT 59.888 55.000 0.00 0.00 0.00 3.55
1925 2081 1.241315 CGGAATCCCACACCCAACAC 61.241 60.000 0.00 0.00 0.00 3.32
1926 2082 1.074072 CGGAATCCCACACCCAACA 59.926 57.895 0.00 0.00 0.00 3.33
1927 2083 1.677633 CCGGAATCCCACACCCAAC 60.678 63.158 0.00 0.00 0.00 3.77
1928 2084 2.760477 CCGGAATCCCACACCCAA 59.240 61.111 0.00 0.00 0.00 4.12
1929 2085 4.041762 GCCGGAATCCCACACCCA 62.042 66.667 5.05 0.00 0.00 4.51
1930 2086 3.577334 TTGCCGGAATCCCACACCC 62.577 63.158 5.05 0.00 0.00 4.61
1931 2087 1.605165 TTTGCCGGAATCCCACACC 60.605 57.895 5.05 0.00 0.00 4.16
1932 2088 1.584495 GTTTGCCGGAATCCCACAC 59.416 57.895 5.05 0.00 0.00 3.82
1933 2089 1.605165 GGTTTGCCGGAATCCCACA 60.605 57.895 5.05 0.00 0.00 4.17
1934 2090 2.348104 GGGTTTGCCGGAATCCCAC 61.348 63.158 16.03 0.00 41.71 4.61
1935 2091 2.036572 GGGTTTGCCGGAATCCCA 59.963 61.111 16.03 0.00 41.71 4.37
1936 2092 0.033894 TAAGGGTTTGCCGGAATCCC 60.034 55.000 5.05 10.76 42.23 3.85
1937 2093 1.749063 CTTAAGGGTTTGCCGGAATCC 59.251 52.381 5.05 0.00 34.97 3.01
1938 2094 1.749063 CCTTAAGGGTTTGCCGGAATC 59.251 52.381 14.25 0.00 34.97 2.52
1939 2095 1.847328 CCTTAAGGGTTTGCCGGAAT 58.153 50.000 14.25 0.00 34.97 3.01
1940 2096 3.349879 CCTTAAGGGTTTGCCGGAA 57.650 52.632 14.25 0.00 34.97 4.30
1952 2108 3.083600 CTTCGCGCGCACCCTTAAG 62.084 63.158 32.61 17.69 0.00 1.85
1953 2109 3.115892 CTTCGCGCGCACCCTTAA 61.116 61.111 32.61 11.55 0.00 1.85
1954 2110 4.367023 ACTTCGCGCGCACCCTTA 62.367 61.111 32.61 2.03 0.00 2.69
1973 2129 1.041437 GTGGATCGGTAGGAGGGAAG 58.959 60.000 0.00 0.00 0.00 3.46
2137 2340 0.266152 AGAGCCTACCCTAGCCACAT 59.734 55.000 0.00 0.00 0.00 3.21
2159 2362 4.652421 TCTCAGCTTGATCTGATCTGAC 57.348 45.455 17.82 7.54 41.73 3.51
2213 2421 5.834204 CAGGGCCTGTATAAGTAGAACTAGT 59.166 44.000 25.74 0.00 0.00 2.57
2229 2437 2.146061 GGGAGAGGATCAGGGCCTG 61.146 68.421 28.01 28.01 37.82 4.85
2238 2446 3.244700 CGCTCAATATTTGGGGAGAGGAT 60.245 47.826 5.03 0.00 0.00 3.24
2270 2478 1.739338 AATTTGCCCGCCGTTGTTGA 61.739 50.000 0.00 0.00 0.00 3.18
2298 2507 6.210784 TGTCAGGATAGCTTGTACTAGTTGTT 59.789 38.462 0.00 0.00 0.00 2.83
2375 2584 1.381928 GCAGGACGGAGGTCATCGTA 61.382 60.000 0.00 0.00 45.28 3.43
2453 2662 2.357517 AAACGCAGGCGAGGAGTG 60.358 61.111 21.62 0.00 42.83 3.51
2468 2677 2.158534 TCTTTGGTGCTAAGGAGGCAAA 60.159 45.455 0.00 0.00 41.54 3.68
2536 2745 2.202932 GCCATGACGATCGGCACT 60.203 61.111 29.05 13.05 45.52 4.40
2558 2767 0.534412 CCTCACAAGGCTCTCGTGAT 59.466 55.000 12.88 0.00 38.87 3.06
2571 2780 4.966787 GGCGGGGCAAACCTCACA 62.967 66.667 0.00 0.00 35.35 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.