Multiple sequence alignment - TraesCS5D01G177100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G177100 chr5D 100.000 7501 0 0 1 7501 276942429 276934929 0.000000e+00 13852.0
1 TraesCS5D01G177100 chr5D 91.270 126 10 1 592 716 376660872 376660747 3.600000e-38 171.0
2 TraesCS5D01G177100 chr5A 95.801 5835 133 30 1 5785 365674246 365668474 0.000000e+00 9315.0
3 TraesCS5D01G177100 chr5A 91.692 1312 55 23 5767 7062 365668452 365667179 0.000000e+00 1770.0
4 TraesCS5D01G177100 chr5A 91.429 350 25 1 7088 7437 365667073 365666729 6.810000e-130 475.0
5 TraesCS5D01G177100 chr5A 95.699 93 3 1 7014 7106 365667182 365667091 1.690000e-31 148.0
6 TraesCS5D01G177100 chr5B 96.415 2594 37 13 2203 4782 314303653 314301102 0.000000e+00 4224.0
7 TraesCS5D01G177100 chr5B 96.031 2217 69 10 1 2208 314306444 314304238 0.000000e+00 3589.0
8 TraesCS5D01G177100 chr5B 94.118 1445 66 7 4811 6236 314301104 314299660 0.000000e+00 2180.0
9 TraesCS5D01G177100 chr5B 87.898 314 18 9 6236 6537 314299528 314299223 1.200000e-92 351.0
10 TraesCS5D01G177100 chr5B 88.396 293 7 9 6570 6861 314299226 314298960 2.020000e-85 327.0
11 TraesCS5D01G177100 chr5B 93.496 123 3 2 7242 7363 314298232 314298350 2.150000e-40 178.0
12 TraesCS5D01G177100 chr5B 93.407 91 6 0 7153 7243 314297816 314297906 1.310000e-27 135.0
13 TraesCS5D01G177100 chr1B 89.972 718 44 14 1 705 54872606 54871904 0.000000e+00 902.0
14 TraesCS5D01G177100 chr1B 88.162 718 56 16 1 705 597262262 597261561 0.000000e+00 828.0
15 TraesCS5D01G177100 chr1B 87.213 305 20 10 177 475 54859835 54860126 5.610000e-86 329.0
16 TraesCS5D01G177100 chr4A 88.472 746 50 21 1 715 635962608 635961868 0.000000e+00 869.0
17 TraesCS5D01G177100 chr2A 88.640 625 43 12 92 705 43682876 43683483 0.000000e+00 736.0
18 TraesCS5D01G177100 chr3A 84.462 251 25 9 305 551 552627261 552627501 1.260000e-57 235.0
19 TraesCS5D01G177100 chr7D 83.691 233 29 7 964 1190 420087313 420087542 2.120000e-50 211.0
20 TraesCS5D01G177100 chr7D 90.909 55 5 0 1 55 318637650 318637596 2.900000e-09 75.0
21 TraesCS5D01G177100 chr7D 93.878 49 3 0 1 49 327403530 327403578 2.900000e-09 75.0
22 TraesCS5D01G177100 chr7B 82.833 233 31 7 964 1190 436083174 436083403 4.590000e-47 200.0
23 TraesCS5D01G177100 chr7A 81.780 236 34 8 964 1193 512764208 512763976 9.940000e-44 189.0
24 TraesCS5D01G177100 chr3B 90.476 126 11 1 592 716 354030656 354030531 1.670000e-36 165.0
25 TraesCS5D01G177100 chr3B 82.114 123 9 5 4 114 314353698 314353577 8.010000e-15 93.5
26 TraesCS5D01G177100 chr6B 89.231 130 10 2 592 717 274211629 274211500 7.790000e-35 159.0
27 TraesCS5D01G177100 chr3D 89.231 130 10 2 592 717 555478994 555478865 7.790000e-35 159.0
28 TraesCS5D01G177100 chr3D 82.258 124 10 5 1 114 250045231 250045352 6.200000e-16 97.1
29 TraesCS5D01G177100 chr4D 89.600 125 12 1 592 715 175790418 175790294 2.800000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G177100 chr5D 276934929 276942429 7500 True 13852.0 13852 100.00000 1 7501 1 chr5D.!!$R1 7500
1 TraesCS5D01G177100 chr5A 365666729 365674246 7517 True 2927.0 9315 93.65525 1 7437 4 chr5A.!!$R1 7436
2 TraesCS5D01G177100 chr5B 314298960 314306444 7484 True 2134.2 4224 92.57160 1 6861 5 chr5B.!!$R1 6860
3 TraesCS5D01G177100 chr1B 54871904 54872606 702 True 902.0 902 89.97200 1 705 1 chr1B.!!$R1 704
4 TraesCS5D01G177100 chr1B 597261561 597262262 701 True 828.0 828 88.16200 1 705 1 chr1B.!!$R2 704
5 TraesCS5D01G177100 chr4A 635961868 635962608 740 True 869.0 869 88.47200 1 715 1 chr4A.!!$R1 714
6 TraesCS5D01G177100 chr2A 43682876 43683483 607 False 736.0 736 88.64000 92 705 1 chr2A.!!$F1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 886 0.388659 ACCTGCATTTTCTTGCGCAA 59.611 45.000 23.48 23.48 45.77 4.85 F
1752 1803 0.464916 ACACCCCTTTTGACACGGTC 60.465 55.000 0.00 0.00 0.00 4.79 F
1883 1935 2.355412 CCATGCTGAAGTGGTGATCTGA 60.355 50.000 0.00 0.00 0.00 3.27 F
2201 2843 3.003171 TGTTTCACCGAATCATGTGTGTG 59.997 43.478 0.00 0.00 34.14 3.82 F
3710 4356 1.134175 ACGCCTGTTTTGTGGTCTTTG 59.866 47.619 0.00 0.00 0.00 2.77 F
4499 5161 2.723322 TTCTGGCTTCATCCTCATGG 57.277 50.000 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 1848 1.888512 ACAATGCCTGCTTGTGGTAAG 59.111 47.619 6.28 0.00 35.57 2.34 R
2606 3248 5.965334 GTCAATTGTACAATACCATCAAGCG 59.035 40.000 21.07 1.55 0.00 4.68 R
3710 4356 6.155827 TGCAACATGAAACATTAACCTAAGC 58.844 36.000 0.00 0.00 0.00 3.09 R
4234 4886 8.890472 ACCCATATATGTTATGTCTTATGTGGT 58.110 33.333 11.73 3.79 36.23 4.16 R
4664 5327 0.458543 ATCAACCAGCTAGCACGACG 60.459 55.000 18.83 2.16 0.00 5.12 R
6512 7407 0.176219 ACGACGGTTGAACAAGTCCA 59.824 50.000 14.43 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 120 0.532573 TCAGGCTTGCTCTAGAACGG 59.467 55.000 0.00 0.00 0.00 4.44
389 413 1.824230 CAGGGAGAAGTGAGTGAGGAG 59.176 57.143 0.00 0.00 0.00 3.69
475 503 3.055747 GCATAGGTAGTGGCCTAATCTCC 60.056 52.174 3.32 0.00 43.58 3.71
586 615 1.469703 CGGGGTTAGGCCTTAAAAACG 59.530 52.381 12.58 5.75 37.43 3.60
590 619 3.129813 GGGTTAGGCCTTAAAAACGATGG 59.870 47.826 12.58 0.00 37.43 3.51
599 628 5.353400 GCCTTAAAAACGATGGCTACTACTT 59.647 40.000 0.00 0.00 40.36 2.24
776 820 8.255111 TCTCATCCACTTATATGTCTGTCATT 57.745 34.615 0.00 0.00 37.91 2.57
778 822 6.707608 TCATCCACTTATATGTCTGTCATTGC 59.292 38.462 0.00 0.00 37.91 3.56
802 846 4.154015 GCATGCTTGTTATGTGTGTCAGTA 59.846 41.667 11.37 0.00 0.00 2.74
842 886 0.388659 ACCTGCATTTTCTTGCGCAA 59.611 45.000 23.48 23.48 45.77 4.85
930 974 8.948631 ATTGTGTATTCTCCTGTGTTGTATAG 57.051 34.615 0.00 0.00 0.00 1.31
938 982 8.997621 TTCTCCTGTGTTGTATAGTTATTGTC 57.002 34.615 0.00 0.00 0.00 3.18
1067 1111 1.003718 CGGGAAGTGGGGTTGAGAC 60.004 63.158 0.00 0.00 0.00 3.36
1315 1361 3.312421 GCTTCATATGCAGGTAAAGCGAA 59.688 43.478 4.49 0.00 31.00 4.70
1373 1420 2.406002 TTTCCCTCACCGGTGCCTTC 62.406 60.000 30.25 0.00 0.00 3.46
1408 1455 7.342581 TGCTTGATGGTTATACCTGTCATTAA 58.657 34.615 0.00 0.00 39.58 1.40
1610 1661 8.201242 TCTGTTTTGGGAAAATAATTTAGCCT 57.799 30.769 0.00 0.00 32.22 4.58
1752 1803 0.464916 ACACCCCTTTTGACACGGTC 60.465 55.000 0.00 0.00 0.00 4.79
1761 1812 4.439426 CCTTTTGACACGGTCATTGTGAAA 60.439 41.667 7.43 4.79 42.40 2.69
1762 1813 3.961477 TTGACACGGTCATTGTGAAAG 57.039 42.857 7.43 0.00 42.40 2.62
1796 1848 9.708222 CAAAGTTGATCTAACATAGTAACATGC 57.292 33.333 0.00 0.00 41.88 4.06
1883 1935 2.355412 CCATGCTGAAGTGGTGATCTGA 60.355 50.000 0.00 0.00 0.00 3.27
2094 2146 4.949856 ACATTGAATCATCTGTGTTACCCC 59.050 41.667 0.00 0.00 0.00 4.95
2189 2241 5.050227 CCTTAACGTGTTTATGTTTCACCGA 60.050 40.000 0.00 0.00 37.27 4.69
2201 2843 3.003171 TGTTTCACCGAATCATGTGTGTG 59.997 43.478 0.00 0.00 34.14 3.82
2291 2933 4.508376 TTGTTTACATGTACTATGCGCG 57.492 40.909 4.68 0.00 0.00 6.86
2504 3146 9.833182 GAAGTCTTGATTTTTGAGGTTATCTTC 57.167 33.333 0.00 0.00 0.00 2.87
2505 3147 8.924511 AGTCTTGATTTTTGAGGTTATCTTCA 57.075 30.769 0.00 0.00 0.00 3.02
2506 3148 9.525826 AGTCTTGATTTTTGAGGTTATCTTCAT 57.474 29.630 0.00 0.00 30.07 2.57
2507 3149 9.780413 GTCTTGATTTTTGAGGTTATCTTCATC 57.220 33.333 0.00 0.00 30.07 2.92
2508 3150 9.745018 TCTTGATTTTTGAGGTTATCTTCATCT 57.255 29.630 0.00 0.00 30.07 2.90
2551 3193 4.450976 GGGAAAATTGTGTTTGCCTTCTT 58.549 39.130 1.41 0.00 43.58 2.52
2606 3248 5.391629 CGTTAACCTATGGAAAAGTCCTTGC 60.392 44.000 0.00 0.00 45.22 4.01
3664 4310 6.424032 ACATATCCTAGGTTTTCACCCTTTC 58.576 40.000 9.08 0.00 45.63 2.62
3710 4356 1.134175 ACGCCTGTTTTGTGGTCTTTG 59.866 47.619 0.00 0.00 0.00 2.77
3729 4375 7.542130 GGTCTTTGCTTAGGTTAATGTTTCATG 59.458 37.037 0.00 0.00 0.00 3.07
3846 4497 5.912528 CATCATCTGCTCAAAAGTTTTTGC 58.087 37.500 11.50 13.30 45.35 3.68
3965 4617 4.666655 CGAAGTGCTGTTAGGTCAATTTCG 60.667 45.833 0.00 0.00 0.00 3.46
4238 4890 5.927954 TTCATTACTGAAACCGTTACCAC 57.072 39.130 0.00 0.00 38.43 4.16
4239 4891 4.958509 TCATTACTGAAACCGTTACCACA 58.041 39.130 0.00 0.00 0.00 4.17
4306 4965 9.097257 TGCTTTTTCTTCTTCTTTTGTTAATGG 57.903 29.630 0.00 0.00 0.00 3.16
4400 5059 3.508793 AGCTTGCTGCATACACATTCTTT 59.491 39.130 1.84 0.00 45.94 2.52
4401 5060 3.611113 GCTTGCTGCATACACATTCTTTG 59.389 43.478 1.84 0.00 42.31 2.77
4492 5154 3.753272 TGCACTACTTTTCTGGCTTCATC 59.247 43.478 0.00 0.00 0.00 2.92
4493 5155 3.127721 GCACTACTTTTCTGGCTTCATCC 59.872 47.826 0.00 0.00 0.00 3.51
4494 5156 4.583871 CACTACTTTTCTGGCTTCATCCT 58.416 43.478 0.00 0.00 0.00 3.24
4495 5157 4.633565 CACTACTTTTCTGGCTTCATCCTC 59.366 45.833 0.00 0.00 0.00 3.71
4496 5158 3.795688 ACTTTTCTGGCTTCATCCTCA 57.204 42.857 0.00 0.00 0.00 3.86
4497 5159 4.313020 ACTTTTCTGGCTTCATCCTCAT 57.687 40.909 0.00 0.00 0.00 2.90
4498 5160 4.015084 ACTTTTCTGGCTTCATCCTCATG 58.985 43.478 0.00 0.00 0.00 3.07
4499 5161 2.723322 TTCTGGCTTCATCCTCATGG 57.277 50.000 0.00 0.00 0.00 3.66
4859 5522 7.173390 ACCAGTTATTTACTTTGAGCAGTCTTC 59.827 37.037 0.00 0.00 33.85 2.87
4974 5637 5.110598 CACATCAAGAGACAAGAGATGGAG 58.889 45.833 0.00 0.00 40.17 3.86
5231 5897 5.721000 TGAATTTCATTGATTAGGCAACCCT 59.279 36.000 0.00 0.00 45.61 4.34
5249 5916 1.664321 CTTGCTGGCTGCCATTCCTC 61.664 60.000 23.64 9.60 42.00 3.71
5300 5967 3.732721 GTGAGAAACAAATGTTGCTGAGC 59.267 43.478 11.50 0.00 43.73 4.26
5412 6079 4.317488 CAATTGGGTTTTTGCTATGTGCT 58.683 39.130 0.00 0.00 43.37 4.40
5423 6090 2.170607 TGCTATGTGCTAAAGAGGGTCC 59.829 50.000 0.00 0.00 43.37 4.46
5457 6124 2.629617 CCTGGCACCCATAAATCCAATC 59.370 50.000 0.00 0.00 30.82 2.67
5464 6131 5.290885 GCACCCATAAATCCAATCGAAAAAC 59.709 40.000 0.00 0.00 0.00 2.43
5587 6276 9.899661 ACTGTATTGCTTTTGTCTTGGTATATA 57.100 29.630 0.00 0.00 0.00 0.86
5694 6385 7.326305 GTCGCAAGTTACTGTATATACCTCATG 59.674 40.741 10.38 2.51 39.48 3.07
5873 6617 1.754803 CATACGGTGGCTCCACTAGAA 59.245 52.381 17.57 3.35 45.52 2.10
5949 6695 1.821753 TGGCGTGTTCCATAATTTGGG 59.178 47.619 6.77 0.00 46.45 4.12
6037 6783 5.546621 AAGTTACAGCTCTACCTTTGTGA 57.453 39.130 0.00 0.00 0.00 3.58
6050 6798 2.288825 CCTTTGTGACGCTTACCTCTCA 60.289 50.000 0.00 0.00 0.00 3.27
6148 6898 1.067516 CTTGACTTGTTGGCTGGTTGG 59.932 52.381 0.00 0.00 0.00 3.77
6158 6909 1.427368 TGGCTGGTTGGACATTACCTT 59.573 47.619 0.00 0.00 35.41 3.50
6173 6924 9.262358 GGACATTACCTTCTAATACAATCAGAC 57.738 37.037 0.00 0.00 0.00 3.51
6316 7208 2.374184 GTGGTGCCCATATTTGCTACA 58.626 47.619 0.00 0.00 35.28 2.74
6317 7209 2.358898 GTGGTGCCCATATTTGCTACAG 59.641 50.000 0.00 0.00 35.28 2.74
6353 7245 8.449625 TGAATTAGTTCTCTACCCTATCTAGCT 58.550 37.037 0.00 0.00 35.33 3.32
6363 7255 3.385111 ACCCTATCTAGCTTGGTTCTTCG 59.615 47.826 0.00 0.00 0.00 3.79
6366 7258 5.244178 CCCTATCTAGCTTGGTTCTTCGTAT 59.756 44.000 0.00 0.00 0.00 3.06
6367 7259 6.153067 CCTATCTAGCTTGGTTCTTCGTATG 58.847 44.000 0.00 0.00 0.00 2.39
6368 7260 3.782046 TCTAGCTTGGTTCTTCGTATGC 58.218 45.455 0.00 0.00 0.00 3.14
6369 7261 1.739067 AGCTTGGTTCTTCGTATGCC 58.261 50.000 0.00 0.00 0.00 4.40
6370 7262 1.003118 AGCTTGGTTCTTCGTATGCCA 59.997 47.619 0.00 0.00 0.00 4.92
6371 7263 1.810151 GCTTGGTTCTTCGTATGCCAA 59.190 47.619 0.00 0.00 37.60 4.52
6372 7264 2.423538 GCTTGGTTCTTCGTATGCCAAT 59.576 45.455 0.00 0.00 38.37 3.16
6506 7401 4.715527 AATTCTTACCGCTTAGACGAGT 57.284 40.909 0.00 0.00 34.06 4.18
6512 7407 1.658686 CCGCTTAGACGAGTGCTCCT 61.659 60.000 0.00 0.00 34.06 3.69
6538 7433 0.782384 GTTCAACCGTCGTGTGCTAG 59.218 55.000 0.00 0.00 0.00 3.42
6546 7441 0.790814 GTCGTGTGCTAGCAGGAAAC 59.209 55.000 20.03 13.07 35.44 2.78
6560 7455 3.228499 GAAACGGTTCCTCTCCACC 57.772 57.895 0.32 0.00 0.00 4.61
6563 7458 2.113243 AACGGTTCCTCTCCACCAGC 62.113 60.000 0.00 0.00 31.84 4.85
6677 7572 9.123902 TGGTATGATAAGATTTGTTGGATTGAG 57.876 33.333 0.00 0.00 0.00 3.02
6678 7573 9.342308 GGTATGATAAGATTTGTTGGATTGAGA 57.658 33.333 0.00 0.00 0.00 3.27
6682 7577 8.906867 TGATAAGATTTGTTGGATTGAGATTCC 58.093 33.333 0.00 0.00 0.00 3.01
6683 7578 9.129532 GATAAGATTTGTTGGATTGAGATTCCT 57.870 33.333 0.00 0.00 34.17 3.36
6858 7757 2.558359 AGCCGTAAGTAGTAACCGTTGT 59.442 45.455 0.00 0.00 0.00 3.32
6861 7760 4.500477 GCCGTAAGTAGTAACCGTTGTATG 59.500 45.833 0.00 0.00 0.00 2.39
6862 7761 5.640732 CCGTAAGTAGTAACCGTTGTATGT 58.359 41.667 0.00 0.00 0.00 2.29
6863 7762 5.512788 CCGTAAGTAGTAACCGTTGTATGTG 59.487 44.000 0.00 0.00 0.00 3.21
6864 7763 6.086222 CGTAAGTAGTAACCGTTGTATGTGT 58.914 40.000 0.00 0.00 0.00 3.72
6866 7765 5.972107 AGTAGTAACCGTTGTATGTGTCT 57.028 39.130 0.00 0.00 0.00 3.41
6867 7766 6.336842 AGTAGTAACCGTTGTATGTGTCTT 57.663 37.500 0.00 0.00 0.00 3.01
6868 7767 6.752168 AGTAGTAACCGTTGTATGTGTCTTT 58.248 36.000 0.00 0.00 0.00 2.52
6870 7769 5.603596 AGTAACCGTTGTATGTGTCTTTCA 58.396 37.500 0.00 0.00 0.00 2.69
6871 7770 6.228258 AGTAACCGTTGTATGTGTCTTTCAT 58.772 36.000 0.00 0.00 0.00 2.57
6872 7771 5.607119 AACCGTTGTATGTGTCTTTCATC 57.393 39.130 0.00 0.00 0.00 2.92
6873 7772 4.894784 ACCGTTGTATGTGTCTTTCATCT 58.105 39.130 0.00 0.00 0.00 2.90
6874 7773 4.929808 ACCGTTGTATGTGTCTTTCATCTC 59.070 41.667 0.00 0.00 0.00 2.75
6875 7774 4.031765 CCGTTGTATGTGTCTTTCATCTCG 59.968 45.833 0.00 0.00 0.00 4.04
6876 7775 4.490959 CGTTGTATGTGTCTTTCATCTCGC 60.491 45.833 0.00 0.00 0.00 5.03
6877 7776 4.456280 TGTATGTGTCTTTCATCTCGCT 57.544 40.909 0.00 0.00 0.00 4.93
6878 7777 4.424626 TGTATGTGTCTTTCATCTCGCTC 58.575 43.478 0.00 0.00 0.00 5.03
6879 7778 1.982612 TGTGTCTTTCATCTCGCTCG 58.017 50.000 0.00 0.00 0.00 5.03
6880 7779 0.642800 GTGTCTTTCATCTCGCTCGC 59.357 55.000 0.00 0.00 0.00 5.03
6881 7780 0.458543 TGTCTTTCATCTCGCTCGCC 60.459 55.000 0.00 0.00 0.00 5.54
6960 7859 1.315257 CCCAGCAAATCTTCACCCCG 61.315 60.000 0.00 0.00 0.00 5.73
6995 7894 3.279875 GCCGATGCCGATTCCACC 61.280 66.667 0.00 0.00 38.22 4.61
6998 7897 1.951130 CGATGCCGATTCCACCTCG 60.951 63.158 0.00 0.00 38.22 4.63
7012 7911 0.531311 ACCTCGTTGAAACCACGGTC 60.531 55.000 0.00 0.00 0.00 4.79
7062 8006 4.849310 GGCCGCCGTTCCAGCATA 62.849 66.667 0.00 0.00 0.00 3.14
7063 8007 2.591715 GCCGCCGTTCCAGCATAT 60.592 61.111 0.00 0.00 0.00 1.78
7080 8024 2.183478 TATGACAGGTGCTGGTTGTG 57.817 50.000 0.00 0.00 35.51 3.33
7130 8110 8.631480 TTTTCCTATTTAGTTCTTCTCCAACC 57.369 34.615 0.00 0.00 0.00 3.77
7153 8133 2.389962 TCGTACCGATTTTTGGGGAG 57.610 50.000 0.00 0.00 0.00 4.30
7170 8150 1.615392 GGAGTGCACAAGAATTTGGCT 59.385 47.619 21.04 0.00 38.66 4.75
7182 8162 4.549458 AGAATTTGGCTCGTGTTTGAATG 58.451 39.130 0.00 0.00 0.00 2.67
7183 8163 2.791383 TTTGGCTCGTGTTTGAATGG 57.209 45.000 0.00 0.00 0.00 3.16
7190 8170 1.336440 TCGTGTTTGAATGGTTGCCAG 59.664 47.619 0.00 0.00 36.75 4.85
7194 8174 3.568007 GTGTTTGAATGGTTGCCAGACTA 59.432 43.478 0.00 0.00 36.75 2.59
7235 8215 1.880941 CCTACTTTCTGGCTACCCCT 58.119 55.000 0.00 0.00 0.00 4.79
7246 8226 4.291249 TCTGGCTACCCCTTAGTCAAAATT 59.709 41.667 0.00 0.00 42.03 1.82
7267 8247 1.199624 GAGCAACAAAACCTTGCACG 58.800 50.000 5.96 0.00 45.48 5.34
7300 8280 9.747898 TTTGGTAGGCTTTTATCAGATTTTCTA 57.252 29.630 0.00 0.00 0.00 2.10
7374 8354 0.528017 TGGAAGCTCTGCTACGACTG 59.472 55.000 0.00 0.00 38.25 3.51
7375 8355 0.804156 GGAAGCTCTGCTACGACTGC 60.804 60.000 0.00 0.00 38.25 4.40
7376 8356 0.109086 GAAGCTCTGCTACGACTGCA 60.109 55.000 0.00 0.00 38.25 4.41
7377 8357 0.389166 AAGCTCTGCTACGACTGCAC 60.389 55.000 0.00 0.00 38.25 4.57
7378 8358 2.155194 GCTCTGCTACGACTGCACG 61.155 63.158 0.00 0.00 36.37 5.34
7379 8359 1.502190 CTCTGCTACGACTGCACGA 59.498 57.895 3.48 0.00 36.37 4.35
7380 8360 0.794981 CTCTGCTACGACTGCACGAC 60.795 60.000 3.48 0.00 36.37 4.34
7383 8363 2.426183 GCTACGACTGCACGACACG 61.426 63.158 3.48 0.00 37.03 4.49
7409 8389 5.220605 GCTCTTTTCTCGTACAAACACAAGT 60.221 40.000 0.00 0.00 0.00 3.16
7437 8417 2.812358 TATGCATGCCGGTACACTAG 57.188 50.000 16.68 0.00 0.00 2.57
7438 8418 0.830648 ATGCATGCCGGTACACTAGT 59.169 50.000 16.68 0.00 0.00 2.57
7439 8419 0.611200 TGCATGCCGGTACACTAGTT 59.389 50.000 16.68 0.00 0.00 2.24
7440 8420 1.006832 GCATGCCGGTACACTAGTTG 58.993 55.000 6.36 0.00 0.00 3.16
7441 8421 1.651987 CATGCCGGTACACTAGTTGG 58.348 55.000 1.90 0.00 0.00 3.77
7442 8422 0.107848 ATGCCGGTACACTAGTTGGC 60.108 55.000 1.90 11.11 38.82 4.52
7443 8423 1.189524 TGCCGGTACACTAGTTGGCT 61.190 55.000 1.90 0.00 39.00 4.75
7444 8424 0.739813 GCCGGTACACTAGTTGGCTG 60.740 60.000 1.90 2.22 36.77 4.85
7445 8425 0.739813 CCGGTACACTAGTTGGCTGC 60.740 60.000 0.00 0.00 0.00 5.25
7446 8426 0.739813 CGGTACACTAGTTGGCTGCC 60.740 60.000 12.87 12.87 0.00 4.85
7447 8427 0.739813 GGTACACTAGTTGGCTGCCG 60.740 60.000 14.98 1.17 0.00 5.69
7448 8428 0.739813 GTACACTAGTTGGCTGCCGG 60.740 60.000 14.98 0.00 0.00 6.13
7449 8429 2.515996 TACACTAGTTGGCTGCCGGC 62.516 60.000 22.73 22.73 40.90 6.13
7450 8430 4.760047 ACTAGTTGGCTGCCGGCG 62.760 66.667 23.90 17.75 42.94 6.46
7451 8431 4.760047 CTAGTTGGCTGCCGGCGT 62.760 66.667 23.90 2.21 42.94 5.68
7452 8432 4.752879 TAGTTGGCTGCCGGCGTC 62.753 66.667 23.90 18.62 42.94 5.19
7458 8438 3.793144 GCTGCCGGCGTCAAAGAG 61.793 66.667 23.90 12.89 0.00 2.85
7459 8439 3.121030 CTGCCGGCGTCAAAGAGG 61.121 66.667 23.90 0.00 0.00 3.69
7467 8447 1.497722 CGTCAAAGAGGCGGAAAGC 59.502 57.895 0.00 0.00 42.87 3.51
7476 8456 2.954611 GCGGAAAGCTCCAACACC 59.045 61.111 0.00 0.00 42.58 4.16
7477 8457 2.966309 GCGGAAAGCTCCAACACCG 61.966 63.158 0.00 0.00 42.58 4.94
7478 8458 1.597027 CGGAAAGCTCCAACACCGT 60.597 57.895 0.00 0.00 42.58 4.83
7479 8459 1.841663 CGGAAAGCTCCAACACCGTG 61.842 60.000 0.00 0.00 42.58 4.94
7480 8460 0.534203 GGAAAGCTCCAACACCGTGA 60.534 55.000 5.28 0.00 41.96 4.35
7481 8461 1.523758 GAAAGCTCCAACACCGTGAT 58.476 50.000 5.28 0.00 0.00 3.06
7482 8462 1.464997 GAAAGCTCCAACACCGTGATC 59.535 52.381 5.28 0.00 0.00 2.92
7483 8463 0.687354 AAGCTCCAACACCGTGATCT 59.313 50.000 5.28 0.00 0.00 2.75
7484 8464 1.557099 AGCTCCAACACCGTGATCTA 58.443 50.000 5.28 0.00 0.00 1.98
7485 8465 1.899814 AGCTCCAACACCGTGATCTAA 59.100 47.619 5.28 0.00 0.00 2.10
7486 8466 2.000447 GCTCCAACACCGTGATCTAAC 59.000 52.381 5.28 0.00 0.00 2.34
7487 8467 2.259618 CTCCAACACCGTGATCTAACG 58.740 52.381 5.28 0.00 43.20 3.18
7488 8468 0.719465 CCAACACCGTGATCTAACGC 59.281 55.000 5.28 0.00 42.23 4.84
7489 8469 0.365523 CAACACCGTGATCTAACGCG 59.634 55.000 3.53 3.53 42.23 6.01
7497 8477 4.966850 CGTGATCTAACGCGGATTTAAT 57.033 40.909 12.47 0.00 39.60 1.40
7498 8478 4.931214 CGTGATCTAACGCGGATTTAATC 58.069 43.478 12.47 6.30 39.60 1.75
7499 8479 4.680110 CGTGATCTAACGCGGATTTAATCT 59.320 41.667 12.47 0.00 39.60 2.40
7500 8480 5.387444 CGTGATCTAACGCGGATTTAATCTG 60.387 44.000 12.47 9.28 39.60 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
389 413 2.364647 CCCCCGTGACCTAATTCTACTC 59.635 54.545 0.00 0.00 0.00 2.59
447 471 1.132500 GCCACTACCTATGCCCTTCT 58.868 55.000 0.00 0.00 0.00 2.85
452 476 2.907042 AGATTAGGCCACTACCTATGCC 59.093 50.000 5.01 0.00 41.93 4.40
475 503 6.748132 TGCAAGGAAAAATAAGAAAGACTGG 58.252 36.000 0.00 0.00 0.00 4.00
599 628 7.571919 ACTGTAGTACTCAGCTACTAATACCA 58.428 38.462 17.17 0.00 39.47 3.25
776 820 0.880441 ACACATAACAAGCATGCGCA 59.120 45.000 14.96 14.96 42.27 6.09
778 822 2.095819 TGACACACATAACAAGCATGCG 60.096 45.455 13.01 0.84 0.00 4.73
802 846 5.418840 AGGTCGTAATGAATGCCAAAAGATT 59.581 36.000 0.00 0.00 0.00 2.40
842 886 5.827797 AGATTATGATACCCAAACGCACATT 59.172 36.000 0.00 0.00 0.00 2.71
930 974 6.438763 CACAAAGACTTGAAGGGACAATAAC 58.561 40.000 0.00 0.00 36.33 1.89
938 982 4.441495 GGAAAACCACAAAGACTTGAAGGG 60.441 45.833 0.00 0.00 36.33 3.95
1067 1111 3.688159 GCAGTGGCTTTGCTGGGG 61.688 66.667 6.55 0.00 38.51 4.96
1170 1214 1.940883 TACCACATCGTGAGCGGGTC 61.941 60.000 0.00 0.00 35.23 4.46
1315 1361 8.574251 TGGATTATTGTAATACTGCAGTTTGT 57.426 30.769 27.06 12.98 0.00 2.83
1373 1420 9.736023 GGTATAACCATCAAGCAATAGAAAAAG 57.264 33.333 0.00 0.00 38.42 2.27
1610 1661 4.890158 TTCTCTTGTCAATACTGAGCCA 57.110 40.909 0.00 0.00 30.14 4.75
1720 1771 4.347360 AAGGGGTGTGTTGAGTAAGTAC 57.653 45.455 0.00 0.00 0.00 2.73
1752 1803 4.339247 ACTTTGTCCACCTCTTTCACAATG 59.661 41.667 0.00 0.00 0.00 2.82
1761 1812 5.071788 TGTTAGATCAACTTTGTCCACCTCT 59.928 40.000 0.00 0.00 38.05 3.69
1762 1813 5.305585 TGTTAGATCAACTTTGTCCACCTC 58.694 41.667 0.00 0.00 38.05 3.85
1796 1848 1.888512 ACAATGCCTGCTTGTGGTAAG 59.111 47.619 6.28 0.00 35.57 2.34
1858 1910 2.942804 TCACCACTTCAGCATGGAAAA 58.057 42.857 0.00 0.00 39.46 2.29
1883 1935 9.403583 TGACTAAAGAGGAAAATTACACAAACT 57.596 29.630 0.00 0.00 0.00 2.66
2189 2241 6.939730 TGAGTATAACCAACACACACATGATT 59.060 34.615 0.00 0.00 0.00 2.57
2201 2843 7.331791 AGTCAAGATTCCTGAGTATAACCAAC 58.668 38.462 0.00 0.00 0.00 3.77
2291 2933 6.790285 ATTGGAAAATTCAATGTGCTTGAC 57.210 33.333 0.00 0.00 43.54 3.18
2504 3146 8.256605 CCTCTGGGTGTTAATAGATGATAGATG 58.743 40.741 0.00 0.00 0.00 2.90
2505 3147 7.401493 CCCTCTGGGTGTTAATAGATGATAGAT 59.599 40.741 0.00 0.00 38.25 1.98
2506 3148 6.726299 CCCTCTGGGTGTTAATAGATGATAGA 59.274 42.308 0.00 0.00 38.25 1.98
2507 3149 6.726299 TCCCTCTGGGTGTTAATAGATGATAG 59.274 42.308 2.25 0.00 44.74 2.08
2508 3150 6.630131 TCCCTCTGGGTGTTAATAGATGATA 58.370 40.000 2.25 0.00 44.74 2.15
2509 3151 5.476983 TCCCTCTGGGTGTTAATAGATGAT 58.523 41.667 2.25 0.00 44.74 2.45
2510 3152 4.890988 TCCCTCTGGGTGTTAATAGATGA 58.109 43.478 2.25 0.00 44.74 2.92
2551 3193 5.855045 ACAAAAACAACCAGGTTACACAAA 58.145 33.333 3.89 0.00 0.00 2.83
2606 3248 5.965334 GTCAATTGTACAATACCATCAAGCG 59.035 40.000 21.07 1.55 0.00 4.68
2710 3352 9.469807 CTGTATAAGAAGGAACATAGATCACAC 57.530 37.037 0.00 0.00 0.00 3.82
3664 4310 9.234827 TGCATAAGAAATTGATGGAGTATATGG 57.765 33.333 0.00 0.00 0.00 2.74
3710 4356 6.155827 TGCAACATGAAACATTAACCTAAGC 58.844 36.000 0.00 0.00 0.00 3.09
4234 4886 8.890472 ACCCATATATGTTATGTCTTATGTGGT 58.110 33.333 11.73 3.79 36.23 4.16
4496 5158 1.210204 AGTGACACCCATGAGGCCAT 61.210 55.000 5.01 0.00 40.58 4.40
4497 5159 0.546507 TAGTGACACCCATGAGGCCA 60.547 55.000 5.01 0.00 40.58 5.36
4498 5160 0.839946 ATAGTGACACCCATGAGGCC 59.160 55.000 0.84 0.00 40.58 5.19
4499 5161 2.292267 CAATAGTGACACCCATGAGGC 58.708 52.381 0.84 0.00 40.58 4.70
4580 5242 1.160137 GACGCTCCTTGCATGAGTTT 58.840 50.000 13.48 3.30 43.06 2.66
4664 5327 0.458543 ATCAACCAGCTAGCACGACG 60.459 55.000 18.83 2.16 0.00 5.12
4881 5544 6.795144 AATCAGGAATGTATTCATGGCAAA 57.205 33.333 16.36 1.38 45.59 3.68
4919 5582 5.126061 ACACAGCATATCAGGATGGTTTTTC 59.874 40.000 0.00 0.00 35.38 2.29
4921 5584 4.603131 ACACAGCATATCAGGATGGTTTT 58.397 39.130 0.00 0.00 35.38 2.43
4957 5620 6.775142 TCGAATATCTCCATCTCTTGTCTCTT 59.225 38.462 0.00 0.00 0.00 2.85
4974 5637 5.176774 TGGAATATGCAACGTGTCGAATATC 59.823 40.000 0.00 0.00 0.00 1.63
5149 5815 2.555547 GGCAGCTGACACCAACACC 61.556 63.158 20.43 1.06 0.00 4.16
5249 5916 6.382821 GCAGCTCTTAATGCGTATACTAAG 57.617 41.667 0.56 2.71 35.28 2.18
5300 5967 5.410746 TCAAAGACTTCATCTAAAGCTGCAG 59.589 40.000 10.11 10.11 36.27 4.41
5412 6079 2.370849 GTTGACTGGTGGACCCTCTTTA 59.629 50.000 0.00 0.00 34.29 1.85
5457 6124 3.863424 TCATAGCGCCTTCTAGTTTTTCG 59.137 43.478 2.29 0.00 0.00 3.46
5464 6131 1.777101 GCTGTCATAGCGCCTTCTAG 58.223 55.000 2.29 0.00 43.63 2.43
5910 6656 5.168569 CGCCAAGTAAAGAGAATACACAGA 58.831 41.667 0.00 0.00 0.00 3.41
5979 6725 4.417437 AGGTAGACTCAGAAAGCAGGTAA 58.583 43.478 0.00 0.00 0.00 2.85
5980 6726 4.048970 AGGTAGACTCAGAAAGCAGGTA 57.951 45.455 0.00 0.00 0.00 3.08
5995 6741 9.498176 GTAACTTTTCATGGTTTTCTAGGTAGA 57.502 33.333 0.00 0.00 0.00 2.59
6037 6783 3.467803 GCCAAATATGAGAGGTAAGCGT 58.532 45.455 0.00 0.00 0.00 5.07
6050 6798 8.091449 TCAAAATTAAGAAACCACGCCAAATAT 58.909 29.630 0.00 0.00 0.00 1.28
6148 6898 9.262358 GGTCTGATTGTATTAGAAGGTAATGTC 57.738 37.037 0.00 0.00 0.00 3.06
6158 6909 7.103641 GGACTGTTTGGTCTGATTGTATTAGA 58.896 38.462 0.00 0.00 36.55 2.10
6192 6943 6.687081 AGCTAGGATATGTAGCGACTAATC 57.313 41.667 0.00 1.52 46.37 1.75
6353 7245 3.366883 GCAATTGGCATACGAAGAACCAA 60.367 43.478 7.72 0.00 44.04 3.67
6367 7259 2.237393 TCACTTGTTTGGCAATTGGC 57.763 45.000 24.20 24.20 38.03 4.52
6368 7260 3.556775 CAGTTCACTTGTTTGGCAATTGG 59.443 43.478 7.72 0.00 38.03 3.16
6369 7261 4.183101 ACAGTTCACTTGTTTGGCAATTG 58.817 39.130 0.00 0.00 38.59 2.32
6370 7262 4.081752 TGACAGTTCACTTGTTTGGCAATT 60.082 37.500 0.00 0.00 36.36 2.32
6371 7263 3.446873 TGACAGTTCACTTGTTTGGCAAT 59.553 39.130 0.00 0.00 36.36 3.56
6372 7264 2.822561 TGACAGTTCACTTGTTTGGCAA 59.177 40.909 0.00 0.00 35.50 4.52
6506 7401 1.476833 GGTTGAACAAGTCCAGGAGCA 60.477 52.381 0.00 0.00 0.00 4.26
6512 7407 0.176219 ACGACGGTTGAACAAGTCCA 59.824 50.000 14.43 0.00 0.00 4.02
6546 7441 1.903877 ATGCTGGTGGAGAGGAACCG 61.904 60.000 0.00 0.00 39.47 4.44
6637 7532 7.649306 TCTTATCATACCATCATATCAATCGCG 59.351 37.037 0.00 0.00 0.00 5.87
6677 7572 5.694995 TCTGGTTTATCCATTCCAGGAATC 58.305 41.667 12.23 0.00 46.12 2.52
6678 7573 5.433051 TCTCTGGTTTATCCATTCCAGGAAT 59.567 40.000 9.12 9.12 46.12 3.01
6679 7574 4.788075 TCTCTGGTTTATCCATTCCAGGAA 59.212 41.667 3.72 3.72 46.12 3.36
6680 7575 4.370776 TCTCTGGTTTATCCATTCCAGGA 58.629 43.478 9.66 0.00 46.12 3.86
6681 7576 4.778213 TCTCTGGTTTATCCATTCCAGG 57.222 45.455 9.66 2.38 46.12 4.45
6682 7577 6.183347 ACTTTCTCTGGTTTATCCATTCCAG 58.817 40.000 0.00 0.00 46.12 3.86
6683 7578 6.139679 ACTTTCTCTGGTTTATCCATTCCA 57.860 37.500 0.00 0.00 46.12 3.53
6858 7757 3.695816 CGAGCGAGATGAAAGACACATA 58.304 45.455 0.00 0.00 0.00 2.29
6861 7760 0.642800 GCGAGCGAGATGAAAGACAC 59.357 55.000 0.00 0.00 0.00 3.67
6862 7761 0.458543 GGCGAGCGAGATGAAAGACA 60.459 55.000 0.00 0.00 0.00 3.41
6863 7762 0.179124 AGGCGAGCGAGATGAAAGAC 60.179 55.000 0.00 0.00 0.00 3.01
6864 7763 0.101399 GAGGCGAGCGAGATGAAAGA 59.899 55.000 0.00 0.00 0.00 2.52
6866 7765 1.226688 CGAGGCGAGCGAGATGAAA 60.227 57.895 0.00 0.00 0.00 2.69
6867 7766 2.409243 CGAGGCGAGCGAGATGAA 59.591 61.111 0.00 0.00 0.00 2.57
6868 7767 4.257510 GCGAGGCGAGCGAGATGA 62.258 66.667 0.00 0.00 0.00 2.92
6870 7769 3.522731 AAGCGAGGCGAGCGAGAT 61.523 61.111 0.00 0.00 40.04 2.75
6871 7770 4.482684 CAAGCGAGGCGAGCGAGA 62.483 66.667 0.00 0.00 40.04 4.04
6872 7771 3.971453 TTCAAGCGAGGCGAGCGAG 62.971 63.158 0.00 0.00 40.04 5.03
6873 7772 3.567478 TTTCAAGCGAGGCGAGCGA 62.567 57.895 0.00 0.00 40.04 4.93
6874 7773 3.112075 TTTCAAGCGAGGCGAGCG 61.112 61.111 0.00 0.00 40.04 5.03
6875 7774 1.841663 TTGTTTCAAGCGAGGCGAGC 61.842 55.000 0.00 0.00 0.00 5.03
6876 7775 0.586319 TTTGTTTCAAGCGAGGCGAG 59.414 50.000 0.00 0.00 0.00 5.03
6877 7776 1.018148 TTTTGTTTCAAGCGAGGCGA 58.982 45.000 0.00 0.00 0.00 5.54
6878 7777 1.833860 TTTTTGTTTCAAGCGAGGCG 58.166 45.000 0.00 0.00 0.00 5.52
6960 7859 3.423154 CACCGGAAAGCTGCGACC 61.423 66.667 9.46 0.00 38.98 4.79
6980 7879 1.951130 CGAGGTGGAATCGGCATCG 60.951 63.158 0.00 0.00 36.54 3.84
6994 7893 1.554042 CGACCGTGGTTTCAACGAGG 61.554 60.000 0.00 0.00 0.00 4.63
6995 7894 1.850640 CGACCGTGGTTTCAACGAG 59.149 57.895 0.00 0.00 0.00 4.18
6998 7897 0.110373 GATGCGACCGTGGTTTCAAC 60.110 55.000 0.00 0.00 0.00 3.18
7012 7911 0.171007 ACCGGCAATCAAAAGATGCG 59.829 50.000 0.00 0.00 40.94 4.73
7062 8006 0.538057 CCACAACCAGCACCTGTCAT 60.538 55.000 0.00 0.00 0.00 3.06
7063 8007 1.152984 CCACAACCAGCACCTGTCA 60.153 57.895 0.00 0.00 0.00 3.58
7073 8017 1.896183 CACCGTGATGCCACAACCA 60.896 57.895 0.00 0.00 43.34 3.67
7080 8024 0.171007 CATCCAAACACCGTGATGCC 59.829 55.000 5.28 0.00 0.00 4.40
7144 8124 2.151502 TTCTTGTGCACTCCCCAAAA 57.848 45.000 19.41 0.54 0.00 2.44
7151 8131 2.666619 CGAGCCAAATTCTTGTGCACTC 60.667 50.000 19.41 1.22 33.58 3.51
7152 8132 1.267806 CGAGCCAAATTCTTGTGCACT 59.732 47.619 19.41 0.00 33.58 4.40
7153 8133 1.001378 ACGAGCCAAATTCTTGTGCAC 60.001 47.619 10.75 10.75 33.58 4.57
7170 8150 1.336440 CTGGCAACCATTCAAACACGA 59.664 47.619 0.00 0.00 30.82 4.35
7182 8162 0.811281 GGCACAATAGTCTGGCAACC 59.189 55.000 0.00 0.00 33.24 3.77
7183 8163 1.533625 TGGCACAATAGTCTGGCAAC 58.466 50.000 0.00 0.00 39.79 4.17
7232 8212 5.841810 TGTTGCTCAAATTTTGACTAAGGG 58.158 37.500 7.74 0.00 35.46 3.95
7235 8215 7.821846 AGGTTTTGTTGCTCAAATTTTGACTAA 59.178 29.630 7.74 3.97 44.15 2.24
7267 8247 8.745590 TCTGATAAAAGCCTACCAAAATTAACC 58.254 33.333 0.00 0.00 0.00 2.85
7300 8280 1.548357 ATGTCTGACGGCAAGCCTCT 61.548 55.000 9.73 0.00 0.00 3.69
7374 8354 0.161870 GAAAAGAGCTCGTGTCGTGC 59.838 55.000 8.37 7.88 44.90 5.34
7375 8355 1.716581 GAGAAAAGAGCTCGTGTCGTG 59.283 52.381 13.33 0.00 0.00 4.35
7376 8356 2.053282 GAGAAAAGAGCTCGTGTCGT 57.947 50.000 13.33 3.37 0.00 4.34
7383 8363 4.506654 TGTGTTTGTACGAGAAAAGAGCTC 59.493 41.667 5.27 5.27 0.00 4.09
7396 8376 8.173130 GCATATAGGTTGTACTTGTGTTTGTAC 58.827 37.037 0.00 0.00 39.37 2.90
7409 8389 2.370519 ACCGGCATGCATATAGGTTGTA 59.629 45.455 21.36 0.00 0.00 2.41
7441 8421 3.793144 CTCTTTGACGCCGGCAGC 61.793 66.667 28.98 18.09 38.52 5.25
7442 8422 3.121030 CCTCTTTGACGCCGGCAG 61.121 66.667 28.98 21.29 0.00 4.85
7446 8426 4.735132 TCCGCCTCTTTGACGCCG 62.735 66.667 0.00 0.00 0.00 6.46
7447 8427 1.912371 CTTTCCGCCTCTTTGACGCC 61.912 60.000 0.00 0.00 0.00 5.68
7448 8428 1.497722 CTTTCCGCCTCTTTGACGC 59.502 57.895 0.00 0.00 0.00 5.19
7449 8429 0.951040 AGCTTTCCGCCTCTTTGACG 60.951 55.000 0.00 0.00 40.39 4.35
7450 8430 0.799393 GAGCTTTCCGCCTCTTTGAC 59.201 55.000 0.00 0.00 40.39 3.18
7451 8431 0.321653 GGAGCTTTCCGCCTCTTTGA 60.322 55.000 0.00 0.00 40.39 2.69
7452 8432 0.606401 TGGAGCTTTCCGCCTCTTTG 60.606 55.000 0.00 0.00 40.39 2.77
7453 8433 0.110486 TTGGAGCTTTCCGCCTCTTT 59.890 50.000 0.00 0.00 40.39 2.52
7454 8434 0.606673 GTTGGAGCTTTCCGCCTCTT 60.607 55.000 0.00 0.00 40.39 2.85
7455 8435 1.003233 GTTGGAGCTTTCCGCCTCT 60.003 57.895 0.00 0.00 40.39 3.69
7456 8436 1.302511 TGTTGGAGCTTTCCGCCTC 60.303 57.895 0.00 0.00 40.39 4.70
7457 8437 1.600916 GTGTTGGAGCTTTCCGCCT 60.601 57.895 0.00 0.00 40.39 5.52
7458 8438 2.626780 GGTGTTGGAGCTTTCCGCC 61.627 63.158 0.00 0.00 40.39 6.13
7459 8439 2.954611 GGTGTTGGAGCTTTCCGC 59.045 61.111 0.00 0.00 39.57 5.54
7460 8440 1.597027 ACGGTGTTGGAGCTTTCCG 60.597 57.895 0.00 0.00 42.94 4.30
7461 8441 0.534203 TCACGGTGTTGGAGCTTTCC 60.534 55.000 8.17 0.00 0.00 3.13
7462 8442 1.464997 GATCACGGTGTTGGAGCTTTC 59.535 52.381 8.17 0.00 0.00 2.62
7463 8443 1.072331 AGATCACGGTGTTGGAGCTTT 59.928 47.619 8.17 0.00 0.00 3.51
7464 8444 0.687354 AGATCACGGTGTTGGAGCTT 59.313 50.000 8.17 0.00 0.00 3.74
7465 8445 1.557099 TAGATCACGGTGTTGGAGCT 58.443 50.000 8.17 0.00 0.00 4.09
7466 8446 2.000447 GTTAGATCACGGTGTTGGAGC 59.000 52.381 8.17 0.00 0.00 4.70
7467 8447 2.259618 CGTTAGATCACGGTGTTGGAG 58.740 52.381 8.17 0.00 36.47 3.86
7468 8448 1.670674 GCGTTAGATCACGGTGTTGGA 60.671 52.381 8.17 0.00 40.69 3.53
7469 8449 0.719465 GCGTTAGATCACGGTGTTGG 59.281 55.000 8.17 0.00 40.69 3.77
7470 8450 0.365523 CGCGTTAGATCACGGTGTTG 59.634 55.000 8.17 0.00 40.69 3.33
7471 8451 0.734942 CCGCGTTAGATCACGGTGTT 60.735 55.000 4.92 0.00 40.69 3.32
7472 8452 1.153901 CCGCGTTAGATCACGGTGT 60.154 57.895 4.92 0.00 40.69 4.16
7473 8453 0.248907 ATCCGCGTTAGATCACGGTG 60.249 55.000 4.92 0.56 45.76 4.94
7474 8454 0.458669 AATCCGCGTTAGATCACGGT 59.541 50.000 4.92 0.00 45.76 4.83
7475 8455 1.567504 AAATCCGCGTTAGATCACGG 58.432 50.000 4.92 6.32 46.97 4.94
7476 8456 4.680110 AGATTAAATCCGCGTTAGATCACG 59.320 41.667 4.92 1.41 43.36 4.35
7477 8457 5.905903 CAGATTAAATCCGCGTTAGATCAC 58.094 41.667 4.92 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.