Multiple sequence alignment - TraesCS5D01G176700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G176700 chr5D 100.000 4865 0 0 1 4865 276705893 276710757 0.000000e+00 8985.0
1 TraesCS5D01G176700 chr5D 92.308 39 1 2 4757 4793 276710593 276710555 2.000000e-03 54.7
2 TraesCS5D01G176700 chr5A 94.383 1620 50 16 741 2336 365090980 365092582 0.000000e+00 2449.0
3 TraesCS5D01G176700 chr5A 95.770 1371 43 2 2687 4043 365093110 365094479 0.000000e+00 2196.0
4 TraesCS5D01G176700 chr5A 86.754 838 54 28 4047 4865 365094516 365095315 0.000000e+00 880.0
5 TraesCS5D01G176700 chr5A 89.032 310 21 9 2333 2636 365092662 365092964 5.950000e-99 372.0
6 TraesCS5D01G176700 chr5B 96.372 1268 35 5 2652 3911 313958736 313960000 0.000000e+00 2076.0
7 TraesCS5D01G176700 chr5B 90.513 917 45 19 687 1575 313956859 313957761 0.000000e+00 1173.0
8 TraesCS5D01G176700 chr5B 91.136 801 44 19 1836 2630 313957845 313958624 0.000000e+00 1061.0
9 TraesCS5D01G176700 chr5B 88.067 771 49 22 3901 4641 313961680 313962437 0.000000e+00 874.0
10 TraesCS5D01G176700 chr5B 93.711 159 8 2 4709 4865 313962501 313962659 2.260000e-58 237.0
11 TraesCS5D01G176700 chr5B 100.000 29 0 0 4673 4701 313962578 313962550 2.000000e-03 54.7
12 TraesCS5D01G176700 chr4A 92.105 532 40 2 1 531 69305994 69305464 0.000000e+00 749.0
13 TraesCS5D01G176700 chr3B 92.105 532 41 1 1 531 12765183 12765714 0.000000e+00 749.0
14 TraesCS5D01G176700 chr3B 100.000 28 0 0 671 698 611137408 611137381 9.000000e-03 52.8
15 TraesCS5D01G176700 chr1B 92.105 532 41 1 1 531 453522079 453522610 0.000000e+00 749.0
16 TraesCS5D01G176700 chr1B 91.541 532 44 1 1 531 610971349 610970818 0.000000e+00 732.0
17 TraesCS5D01G176700 chr1A 92.060 529 41 1 4 531 491376416 491375888 0.000000e+00 743.0
18 TraesCS5D01G176700 chr3D 91.620 537 42 3 1 535 85594787 85594252 0.000000e+00 739.0
19 TraesCS5D01G176700 chr3D 91.729 532 43 1 1 531 597288477 597289008 0.000000e+00 737.0
20 TraesCS5D01G176700 chr4D 91.729 532 43 1 1 531 397697124 397696593 0.000000e+00 737.0
21 TraesCS5D01G176700 chr6A 91.541 532 44 1 1 531 457075101 457075632 0.000000e+00 732.0
22 TraesCS5D01G176700 chr2B 85.484 62 9 0 634 695 621966249 621966310 1.130000e-06 65.8
23 TraesCS5D01G176700 chr6D 89.796 49 5 0 649 697 66443872 66443824 4.070000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G176700 chr5D 276705893 276710757 4864 False 8985.00 8985 100.00000 1 4865 1 chr5D.!!$F1 4864
1 TraesCS5D01G176700 chr5A 365090980 365095315 4335 False 1474.25 2449 91.48475 741 4865 4 chr5A.!!$F1 4124
2 TraesCS5D01G176700 chr5B 313956859 313962659 5800 False 1084.20 2076 91.95980 687 4865 5 chr5B.!!$F1 4178
3 TraesCS5D01G176700 chr4A 69305464 69305994 530 True 749.00 749 92.10500 1 531 1 chr4A.!!$R1 530
4 TraesCS5D01G176700 chr3B 12765183 12765714 531 False 749.00 749 92.10500 1 531 1 chr3B.!!$F1 530
5 TraesCS5D01G176700 chr1B 453522079 453522610 531 False 749.00 749 92.10500 1 531 1 chr1B.!!$F1 530
6 TraesCS5D01G176700 chr1B 610970818 610971349 531 True 732.00 732 91.54100 1 531 1 chr1B.!!$R1 530
7 TraesCS5D01G176700 chr1A 491375888 491376416 528 True 743.00 743 92.06000 4 531 1 chr1A.!!$R1 527
8 TraesCS5D01G176700 chr3D 85594252 85594787 535 True 739.00 739 91.62000 1 535 1 chr3D.!!$R1 534
9 TraesCS5D01G176700 chr3D 597288477 597289008 531 False 737.00 737 91.72900 1 531 1 chr3D.!!$F1 530
10 TraesCS5D01G176700 chr4D 397696593 397697124 531 True 737.00 737 91.72900 1 531 1 chr4D.!!$R1 530
11 TraesCS5D01G176700 chr6A 457075101 457075632 531 False 732.00 732 91.54100 1 531 1 chr6A.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 694 0.102300 GGTTGTGTGTTGGAGTTGCC 59.898 55.0 0.00 0.00 37.1 4.52 F
733 735 0.400213 TTCCAATCCAACGGCTCTGT 59.600 50.0 0.00 0.00 0.0 3.41 F
1522 1562 0.546598 AAATGGGGTCGTGGGATCTC 59.453 55.0 0.00 0.00 0.0 2.75 F
2416 2568 0.255033 GCTATGGAAACCCGGGAACT 59.745 55.0 32.02 10.97 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1573 1.786441 ACCAGATTCCCTTTTCCACCA 59.214 47.619 0.0 0.0 0.0 4.17 R
1534 1574 2.171003 CACCAGATTCCCTTTTCCACC 58.829 52.381 0.0 0.0 0.0 4.61 R
2859 3119 1.816835 CACGGGACTACTAGCTTCACA 59.183 52.381 0.0 0.0 0.0 3.58 R
4365 6363 0.249031 AGCTTCACCTTGCGTTTTGC 60.249 50.000 0.0 0.0 46.7 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 0.982852 TCATCGCCCCTCCATCACTT 60.983 55.000 0.00 0.00 0.00 3.16
63 64 1.866853 CTTGAGCCGGGCAAACCTTC 61.867 60.000 23.09 9.31 36.97 3.46
72 73 3.404899 CGGGCAAACCTTCTTGTAGTAA 58.595 45.455 0.00 0.00 36.97 2.24
114 115 2.283173 GGCCCCAAAGGACCAGTG 60.283 66.667 0.00 0.00 37.96 3.66
150 151 3.945921 ACCATCGTCGATGAAGAGAGTTA 59.054 43.478 31.82 0.00 42.09 2.24
193 194 1.485032 AACCACACGAACGAAGACGC 61.485 55.000 0.14 0.00 43.96 5.19
271 272 2.176055 CGACGGAGACACACCTCG 59.824 66.667 0.00 0.00 34.08 4.63
324 325 2.836360 GCGGGGATAGGACGTGGA 60.836 66.667 0.00 0.00 0.00 4.02
330 331 1.829222 GGGATAGGACGTGGAAGACAA 59.171 52.381 0.00 0.00 0.00 3.18
354 355 2.043752 TACCGAGGGACATCGCCA 60.044 61.111 0.27 0.00 41.37 5.69
385 386 1.616159 CCCCAACCAAGACGTTCAAT 58.384 50.000 0.00 0.00 0.00 2.57
451 452 4.767255 CCTCCGCACCTCCACAGC 62.767 72.222 0.00 0.00 0.00 4.40
539 541 2.391926 GGGGGAGGAAAAACTTTGGA 57.608 50.000 0.00 0.00 0.00 3.53
540 542 2.248248 GGGGGAGGAAAAACTTTGGAG 58.752 52.381 0.00 0.00 0.00 3.86
541 543 2.158370 GGGGGAGGAAAAACTTTGGAGA 60.158 50.000 0.00 0.00 0.00 3.71
542 544 3.572642 GGGGAGGAAAAACTTTGGAGAA 58.427 45.455 0.00 0.00 0.00 2.87
543 545 3.964688 GGGGAGGAAAAACTTTGGAGAAA 59.035 43.478 0.00 0.00 0.00 2.52
544 546 4.039245 GGGGAGGAAAAACTTTGGAGAAAG 59.961 45.833 0.00 0.00 43.79 2.62
545 547 4.893524 GGGAGGAAAAACTTTGGAGAAAGA 59.106 41.667 0.00 0.00 41.12 2.52
546 548 5.010112 GGGAGGAAAAACTTTGGAGAAAGAG 59.990 44.000 0.00 0.00 41.12 2.85
547 549 5.828328 GGAGGAAAAACTTTGGAGAAAGAGA 59.172 40.000 0.00 0.00 41.12 3.10
548 550 6.016693 GGAGGAAAAACTTTGGAGAAAGAGAG 60.017 42.308 0.00 0.00 41.12 3.20
549 551 6.663734 AGGAAAAACTTTGGAGAAAGAGAGA 58.336 36.000 0.00 0.00 41.12 3.10
550 552 6.770303 AGGAAAAACTTTGGAGAAAGAGAGAG 59.230 38.462 0.00 0.00 41.12 3.20
551 553 6.544197 GGAAAAACTTTGGAGAAAGAGAGAGT 59.456 38.462 0.00 0.00 41.12 3.24
552 554 7.067615 GGAAAAACTTTGGAGAAAGAGAGAGTT 59.932 37.037 0.00 0.00 41.12 3.01
553 555 6.934048 AAACTTTGGAGAAAGAGAGAGTTG 57.066 37.500 0.00 0.00 41.12 3.16
554 556 5.622346 ACTTTGGAGAAAGAGAGAGTTGT 57.378 39.130 0.00 0.00 41.12 3.32
555 557 5.363939 ACTTTGGAGAAAGAGAGAGTTGTG 58.636 41.667 0.00 0.00 41.12 3.33
556 558 5.129485 ACTTTGGAGAAAGAGAGAGTTGTGA 59.871 40.000 0.00 0.00 41.12 3.58
557 559 4.862902 TGGAGAAAGAGAGAGTTGTGAG 57.137 45.455 0.00 0.00 0.00 3.51
558 560 4.474394 TGGAGAAAGAGAGAGTTGTGAGA 58.526 43.478 0.00 0.00 0.00 3.27
559 561 4.522405 TGGAGAAAGAGAGAGTTGTGAGAG 59.478 45.833 0.00 0.00 0.00 3.20
560 562 4.082245 GGAGAAAGAGAGAGTTGTGAGAGG 60.082 50.000 0.00 0.00 0.00 3.69
561 563 3.258123 AGAAAGAGAGAGTTGTGAGAGGC 59.742 47.826 0.00 0.00 0.00 4.70
562 564 2.300956 AGAGAGAGTTGTGAGAGGCA 57.699 50.000 0.00 0.00 0.00 4.75
563 565 2.603021 AGAGAGAGTTGTGAGAGGCAA 58.397 47.619 0.00 0.00 0.00 4.52
564 566 2.298729 AGAGAGAGTTGTGAGAGGCAAC 59.701 50.000 0.00 0.00 44.57 4.17
565 567 2.036475 GAGAGAGTTGTGAGAGGCAACA 59.964 50.000 10.22 0.00 46.09 3.33
566 568 2.139118 GAGAGTTGTGAGAGGCAACAC 58.861 52.381 10.22 4.61 46.09 3.32
567 569 1.202698 AGAGTTGTGAGAGGCAACACC 60.203 52.381 10.22 2.80 46.09 4.16
583 585 7.992180 GGCAACACCTAATTTGAGATATTTG 57.008 36.000 0.00 0.00 34.51 2.32
584 586 7.547227 GGCAACACCTAATTTGAGATATTTGT 58.453 34.615 0.00 0.00 34.51 2.83
585 587 8.034804 GGCAACACCTAATTTGAGATATTTGTT 58.965 33.333 0.00 0.00 34.51 2.83
598 600 9.443323 TTGAGATATTTGTTATTCTCAAACGGA 57.557 29.630 10.79 0.00 40.04 4.69
599 601 8.879759 TGAGATATTTGTTATTCTCAAACGGAC 58.120 33.333 0.00 0.00 37.56 4.79
600 602 7.906160 AGATATTTGTTATTCTCAAACGGACG 58.094 34.615 0.00 0.00 37.56 4.79
601 603 7.762615 AGATATTTGTTATTCTCAAACGGACGA 59.237 33.333 0.00 0.00 37.56 4.20
602 604 5.585500 TTTGTTATTCTCAAACGGACGAG 57.415 39.130 0.00 0.00 31.17 4.18
603 605 4.508461 TGTTATTCTCAAACGGACGAGA 57.492 40.909 0.00 0.00 36.50 4.04
604 606 5.068234 TGTTATTCTCAAACGGACGAGAT 57.932 39.130 0.00 0.00 38.06 2.75
605 607 4.862574 TGTTATTCTCAAACGGACGAGATG 59.137 41.667 0.00 0.00 38.06 2.90
606 608 1.710013 TTCTCAAACGGACGAGATGC 58.290 50.000 0.00 0.00 38.06 3.91
614 616 2.508439 GACGAGATGCGGCCGAAA 60.508 61.111 33.48 17.52 44.13 3.46
615 617 1.883084 GACGAGATGCGGCCGAAAT 60.883 57.895 33.48 22.03 44.13 2.17
616 618 2.094126 GACGAGATGCGGCCGAAATG 62.094 60.000 33.48 15.12 44.13 2.32
617 619 2.329339 GAGATGCGGCCGAAATGC 59.671 61.111 33.48 13.08 0.00 3.56
618 620 3.512287 GAGATGCGGCCGAAATGCG 62.512 63.158 33.48 0.00 40.47 4.73
619 621 3.572539 GATGCGGCCGAAATGCGA 61.573 61.111 33.48 2.37 44.57 5.10
620 622 2.896801 GATGCGGCCGAAATGCGAT 61.897 57.895 33.48 0.00 44.57 4.58
621 623 2.770587 GATGCGGCCGAAATGCGATC 62.771 60.000 33.48 8.11 44.57 3.69
622 624 3.272334 GCGGCCGAAATGCGATCT 61.272 61.111 33.48 0.00 44.57 2.75
623 625 2.931386 CGGCCGAAATGCGATCTC 59.069 61.111 24.07 0.00 44.57 2.75
624 626 1.882625 CGGCCGAAATGCGATCTCA 60.883 57.895 24.07 0.00 44.57 3.27
625 627 1.224069 CGGCCGAAATGCGATCTCAT 61.224 55.000 24.07 0.00 44.57 2.90
626 628 0.947244 GGCCGAAATGCGATCTCATT 59.053 50.000 5.08 5.08 44.57 2.57
627 629 2.143122 GGCCGAAATGCGATCTCATTA 58.857 47.619 11.18 0.00 44.57 1.90
628 630 2.096218 GGCCGAAATGCGATCTCATTAC 60.096 50.000 11.18 2.59 44.57 1.89
629 631 2.096218 GCCGAAATGCGATCTCATTACC 60.096 50.000 11.18 6.12 44.57 2.85
630 632 3.130633 CCGAAATGCGATCTCATTACCA 58.869 45.455 11.18 0.00 44.57 3.25
631 633 3.059597 CCGAAATGCGATCTCATTACCAC 60.060 47.826 11.18 3.84 44.57 4.16
632 634 3.804325 CGAAATGCGATCTCATTACCACT 59.196 43.478 11.18 0.00 44.57 4.00
633 635 4.084849 CGAAATGCGATCTCATTACCACTC 60.085 45.833 11.18 4.53 44.57 3.51
634 636 2.890808 TGCGATCTCATTACCACTCC 57.109 50.000 0.00 0.00 0.00 3.85
635 637 2.107366 TGCGATCTCATTACCACTCCA 58.893 47.619 0.00 0.00 0.00 3.86
636 638 2.499693 TGCGATCTCATTACCACTCCAA 59.500 45.455 0.00 0.00 0.00 3.53
637 639 3.055458 TGCGATCTCATTACCACTCCAAA 60.055 43.478 0.00 0.00 0.00 3.28
638 640 3.309954 GCGATCTCATTACCACTCCAAAC 59.690 47.826 0.00 0.00 0.00 2.93
639 641 3.551890 CGATCTCATTACCACTCCAAACG 59.448 47.826 0.00 0.00 0.00 3.60
640 642 3.328382 TCTCATTACCACTCCAAACGG 57.672 47.619 0.00 0.00 0.00 4.44
641 643 2.901192 TCTCATTACCACTCCAAACGGA 59.099 45.455 0.00 0.00 0.00 4.69
642 644 3.517901 TCTCATTACCACTCCAAACGGAT 59.482 43.478 0.00 0.00 30.13 4.18
643 645 3.605634 TCATTACCACTCCAAACGGATG 58.394 45.455 0.00 0.00 30.13 3.51
644 646 3.262151 TCATTACCACTCCAAACGGATGA 59.738 43.478 0.00 0.00 30.13 2.92
645 647 3.773418 TTACCACTCCAAACGGATGAA 57.227 42.857 0.00 0.00 30.13 2.57
646 648 2.649531 ACCACTCCAAACGGATGAAA 57.350 45.000 0.00 0.00 30.13 2.69
647 649 2.938838 ACCACTCCAAACGGATGAAAA 58.061 42.857 0.00 0.00 30.13 2.29
648 650 2.621526 ACCACTCCAAACGGATGAAAAC 59.378 45.455 0.00 0.00 30.13 2.43
649 651 2.030274 CCACTCCAAACGGATGAAAACC 60.030 50.000 0.00 0.00 30.13 3.27
658 660 2.606717 GGATGAAAACCGGACGAAAC 57.393 50.000 9.46 0.00 0.00 2.78
659 661 1.874872 GGATGAAAACCGGACGAAACA 59.125 47.619 9.46 0.43 0.00 2.83
660 662 2.095919 GGATGAAAACCGGACGAAACAG 60.096 50.000 9.46 0.00 0.00 3.16
661 663 2.312722 TGAAAACCGGACGAAACAGA 57.687 45.000 9.46 0.00 0.00 3.41
662 664 1.935199 TGAAAACCGGACGAAACAGAC 59.065 47.619 9.46 0.00 0.00 3.51
663 665 0.932399 AAAACCGGACGAAACAGACG 59.068 50.000 9.46 0.00 0.00 4.18
664 666 0.179103 AAACCGGACGAAACAGACGT 60.179 50.000 9.46 0.00 46.58 4.34
672 674 1.871039 ACGAAACAGACGTCCATTTGG 59.129 47.619 16.86 17.05 39.87 3.28
673 675 1.196808 CGAAACAGACGTCCATTTGGG 59.803 52.381 16.86 7.18 35.41 4.12
674 676 1.539827 GAAACAGACGTCCATTTGGGG 59.460 52.381 16.86 0.00 37.22 4.96
675 677 0.476771 AACAGACGTCCATTTGGGGT 59.523 50.000 13.01 0.00 37.22 4.95
676 678 0.476771 ACAGACGTCCATTTGGGGTT 59.523 50.000 13.01 0.00 37.22 4.11
677 679 0.881118 CAGACGTCCATTTGGGGTTG 59.119 55.000 13.01 0.00 37.22 3.77
678 680 0.476771 AGACGTCCATTTGGGGTTGT 59.523 50.000 13.01 0.00 37.22 3.32
679 681 0.596082 GACGTCCATTTGGGGTTGTG 59.404 55.000 3.51 0.00 37.22 3.33
680 682 0.106419 ACGTCCATTTGGGGTTGTGT 60.106 50.000 0.00 0.00 37.22 3.72
681 683 0.313672 CGTCCATTTGGGGTTGTGTG 59.686 55.000 0.00 0.00 37.22 3.82
682 684 1.408969 GTCCATTTGGGGTTGTGTGT 58.591 50.000 0.00 0.00 37.22 3.72
683 685 1.760029 GTCCATTTGGGGTTGTGTGTT 59.240 47.619 0.00 0.00 37.22 3.32
684 686 1.759445 TCCATTTGGGGTTGTGTGTTG 59.241 47.619 0.00 0.00 37.22 3.33
685 687 1.202627 CCATTTGGGGTTGTGTGTTGG 60.203 52.381 0.00 0.00 0.00 3.77
688 690 0.333312 TTGGGGTTGTGTGTTGGAGT 59.667 50.000 0.00 0.00 0.00 3.85
692 694 0.102300 GGTTGTGTGTTGGAGTTGCC 59.898 55.000 0.00 0.00 37.10 4.52
722 724 3.378911 GAGTCCTCGATCTTCCAATCC 57.621 52.381 0.00 0.00 0.00 3.01
723 725 2.695666 GAGTCCTCGATCTTCCAATCCA 59.304 50.000 0.00 0.00 0.00 3.41
724 726 3.107601 AGTCCTCGATCTTCCAATCCAA 58.892 45.455 0.00 0.00 0.00 3.53
725 727 3.118592 AGTCCTCGATCTTCCAATCCAAC 60.119 47.826 0.00 0.00 0.00 3.77
726 728 2.159099 TCCTCGATCTTCCAATCCAACG 60.159 50.000 0.00 0.00 0.00 4.10
727 729 2.205074 CTCGATCTTCCAATCCAACGG 58.795 52.381 0.00 0.00 0.00 4.44
728 730 0.657840 CGATCTTCCAATCCAACGGC 59.342 55.000 0.00 0.00 0.00 5.68
729 731 1.743772 CGATCTTCCAATCCAACGGCT 60.744 52.381 0.00 0.00 0.00 5.52
732 734 1.089920 CTTCCAATCCAACGGCTCTG 58.910 55.000 0.00 0.00 0.00 3.35
733 735 0.400213 TTCCAATCCAACGGCTCTGT 59.600 50.000 0.00 0.00 0.00 3.41
734 736 1.271856 TCCAATCCAACGGCTCTGTA 58.728 50.000 0.00 0.00 0.00 2.74
736 738 2.009774 CCAATCCAACGGCTCTGTAAG 58.990 52.381 0.00 0.00 0.00 2.34
783 808 7.981142 ACAACGTTGTATATTGACCTATTTGG 58.019 34.615 31.49 0.00 40.16 3.28
839 864 2.481952 CCTTTTCCACTCTCGAAGCTTG 59.518 50.000 2.10 0.00 0.00 4.01
901 934 4.036262 CACTATCTTCGTCCTCCTCTCAAG 59.964 50.000 0.00 0.00 0.00 3.02
902 935 2.588464 TCTTCGTCCTCCTCTCAAGT 57.412 50.000 0.00 0.00 0.00 3.16
903 936 2.438411 TCTTCGTCCTCCTCTCAAGTC 58.562 52.381 0.00 0.00 0.00 3.01
904 937 2.040545 TCTTCGTCCTCCTCTCAAGTCT 59.959 50.000 0.00 0.00 0.00 3.24
905 938 2.116827 TCGTCCTCCTCTCAAGTCTC 57.883 55.000 0.00 0.00 0.00 3.36
906 939 1.351350 TCGTCCTCCTCTCAAGTCTCA 59.649 52.381 0.00 0.00 0.00 3.27
907 940 2.163509 CGTCCTCCTCTCAAGTCTCAA 58.836 52.381 0.00 0.00 0.00 3.02
908 941 2.094957 CGTCCTCCTCTCAAGTCTCAAC 60.095 54.545 0.00 0.00 0.00 3.18
909 942 2.094957 GTCCTCCTCTCAAGTCTCAACG 60.095 54.545 0.00 0.00 0.00 4.10
965 1002 1.202758 ACATCCAAGAAACCACTCGCA 60.203 47.619 0.00 0.00 0.00 5.10
1152 1189 3.311110 GTGGTGGACCTCCTGCGA 61.311 66.667 13.67 0.00 36.82 5.10
1365 1405 3.760035 CGGTGAGTGAGTCCCGGG 61.760 72.222 16.85 16.85 36.11 5.73
1367 1407 2.603776 GTGAGTGAGTCCCGGGGT 60.604 66.667 23.50 8.63 0.00 4.95
1377 1417 4.614036 CCCGGGGTTTGGCTTGGT 62.614 66.667 14.71 0.00 0.00 3.67
1380 1420 1.606313 CGGGGTTTGGCTTGGTGAT 60.606 57.895 0.00 0.00 0.00 3.06
1419 1459 2.493278 AGCGGTGAAGCATTTTAGCATT 59.507 40.909 0.00 0.00 40.15 3.56
1424 1464 5.343249 GGTGAAGCATTTTAGCATTAGTGG 58.657 41.667 0.00 0.00 36.85 4.00
1451 1491 9.189156 TGATTCTTATTTTGGGATTCCTGTTAG 57.811 33.333 2.01 0.00 0.00 2.34
1467 1507 4.697352 CCTGTTAGTTGAGAGGGAAATGTG 59.303 45.833 0.00 0.00 0.00 3.21
1522 1562 0.546598 AAATGGGGTCGTGGGATCTC 59.453 55.000 0.00 0.00 0.00 2.75
1532 1572 3.570550 GTCGTGGGATCTCTATGTAGCTT 59.429 47.826 0.00 0.00 0.00 3.74
1533 1573 4.038162 GTCGTGGGATCTCTATGTAGCTTT 59.962 45.833 0.00 0.00 0.00 3.51
1534 1574 4.038042 TCGTGGGATCTCTATGTAGCTTTG 59.962 45.833 0.00 0.00 0.00 2.77
1586 1626 6.867816 TGATTTAATTTGTTCGCATTTGCTCT 59.132 30.769 0.51 0.00 39.32 4.09
1672 1712 0.611618 TCTGCAATTTGATGCCCGGT 60.612 50.000 0.00 0.00 45.83 5.28
1722 1762 5.978919 GTCAATGCTCAGTTCATTGTTTTCA 59.021 36.000 13.32 0.00 46.50 2.69
1880 1935 6.334202 ACGGCAAAATCTGTTGTTTTTCTTA 58.666 32.000 0.00 0.00 0.00 2.10
1955 2010 2.035449 GCCTAGTTGTTCCAACCCAAAC 59.965 50.000 3.61 0.00 0.00 2.93
2331 2400 7.386851 TCCTGTTTGAAGACTATCCTTACTTG 58.613 38.462 0.00 0.00 0.00 3.16
2382 2534 1.468520 GCGCAATACCACACTGTGATT 59.531 47.619 15.86 0.53 35.23 2.57
2406 2558 8.588290 TTAAATTCTGCTTTAGGCTATGGAAA 57.412 30.769 0.00 0.00 42.39 3.13
2416 2568 0.255033 GCTATGGAAACCCGGGAACT 59.745 55.000 32.02 10.97 0.00 3.01
2425 2577 4.162131 GGAAACCCGGGAACTATTGTACTA 59.838 45.833 32.02 0.00 0.00 1.82
2426 2578 4.743057 AACCCGGGAACTATTGTACTAC 57.257 45.455 32.02 0.00 0.00 2.73
2427 2579 3.986435 ACCCGGGAACTATTGTACTACT 58.014 45.455 32.02 0.00 0.00 2.57
2429 2581 3.956199 CCCGGGAACTATTGTACTACTCA 59.044 47.826 18.48 0.00 0.00 3.41
2430 2582 4.037684 CCCGGGAACTATTGTACTACTCAG 59.962 50.000 18.48 0.00 0.00 3.35
2431 2583 4.499357 CCGGGAACTATTGTACTACTCAGC 60.499 50.000 0.00 0.00 0.00 4.26
2432 2584 4.338682 CGGGAACTATTGTACTACTCAGCT 59.661 45.833 0.00 0.00 0.00 4.24
2434 2586 6.627508 CGGGAACTATTGTACTACTCAGCTTT 60.628 42.308 0.00 0.00 0.00 3.51
2435 2587 6.757478 GGGAACTATTGTACTACTCAGCTTTC 59.243 42.308 0.00 0.00 0.00 2.62
2436 2588 7.363968 GGGAACTATTGTACTACTCAGCTTTCT 60.364 40.741 0.00 0.00 0.00 2.52
2437 2589 8.684520 GGAACTATTGTACTACTCAGCTTTCTA 58.315 37.037 0.00 0.00 0.00 2.10
2461 2614 9.757227 CTATTAATAATCCCTATCTGCTGCTAC 57.243 37.037 0.00 0.00 0.00 3.58
2470 2623 0.256752 TCTGCTGCTACCATGGCAAT 59.743 50.000 13.04 0.00 39.30 3.56
2540 2693 9.918630 ATTTAGACTGTCCAATTTCTTTCATTG 57.081 29.630 3.76 0.00 0.00 2.82
2551 2706 8.193438 CCAATTTCTTTCATTGGGATACTCTTC 58.807 37.037 4.05 0.00 44.94 2.87
2599 2754 9.685276 TGGATTCAGAAGATTTGCTAATTTAGA 57.315 29.630 7.63 0.00 0.00 2.10
2600 2755 9.943163 GGATTCAGAAGATTTGCTAATTTAGAC 57.057 33.333 7.63 0.11 0.00 2.59
2615 2771 9.482627 GCTAATTTAGACTAGTAATGTCTGCAT 57.517 33.333 7.63 0.00 43.66 3.96
2619 2775 8.932945 TTTAGACTAGTAATGTCTGCATTGAG 57.067 34.615 0.00 1.67 44.32 3.02
2683 2935 0.821517 ACGGGCACATGACTATTCGA 59.178 50.000 0.00 0.00 0.00 3.71
2699 2959 9.226606 TGACTATTCGATTTTCCATACTTGTTT 57.773 29.630 0.00 0.00 0.00 2.83
2713 2973 3.050619 ACTTGTTTACTGCGTCGAGAAG 58.949 45.455 0.00 0.00 0.00 2.85
2723 2983 6.963049 ACTGCGTCGAGAAGTAATAATTTT 57.037 33.333 0.00 0.00 36.83 1.82
2724 2984 9.571810 TTACTGCGTCGAGAAGTAATAATTTTA 57.428 29.630 9.92 0.00 44.12 1.52
2725 2985 7.892803 ACTGCGTCGAGAAGTAATAATTTTAC 58.107 34.615 0.00 0.00 36.83 2.01
2726 2986 6.914935 TGCGTCGAGAAGTAATAATTTTACG 58.085 36.000 0.00 0.00 0.00 3.18
2859 3119 5.512232 GGTGAAGGCTAATCTTGCTAGCTAT 60.512 44.000 17.23 4.14 41.32 2.97
3241 3501 1.677576 CAAACTTGACTGCAGCAAGGA 59.322 47.619 33.93 14.40 45.31 3.36
3288 3548 1.909700 TCATGAGCAACAAAGGGACC 58.090 50.000 0.00 0.00 0.00 4.46
3582 3842 2.706190 GGATTGCACCACCCTCTACTAT 59.294 50.000 0.00 0.00 0.00 2.12
3621 3881 2.359975 GGGGAGAAGGGCAACGTG 60.360 66.667 0.00 0.00 37.60 4.49
3624 3884 1.070786 GGAGAAGGGCAACGTGTCA 59.929 57.895 0.00 0.00 37.60 3.58
3627 3887 1.464997 GAGAAGGGCAACGTGTCATTC 59.535 52.381 8.31 8.31 42.37 2.67
3645 3905 5.292101 GTCATTCGCTTTCAACAGCTACTAT 59.708 40.000 0.00 0.00 37.68 2.12
3987 5949 3.380637 TCGTAAGATTAGCGAAGAAGGCT 59.619 43.478 0.00 0.00 45.01 4.58
3991 5953 6.088350 CGTAAGATTAGCGAAGAAGGCTATTC 59.912 42.308 7.32 7.32 40.67 1.75
4044 6006 9.690434 GTTTAAATTTCTATCTGCAAGTAGTCG 57.310 33.333 0.00 0.00 33.76 4.18
4045 6040 5.975410 AATTTCTATCTGCAAGTAGTCGC 57.025 39.130 5.28 0.00 33.76 5.19
4054 6049 1.401931 GCAAGTAGTCGCGGTGAGTAA 60.402 52.381 6.13 0.00 34.31 2.24
4064 6059 4.802039 GTCGCGGTGAGTAATCTTGATTTA 59.198 41.667 6.13 0.00 0.00 1.40
4129 6124 6.152831 AGGGATGTTTATTGCTGGAAAGTAAC 59.847 38.462 0.00 0.00 0.00 2.50
4171 6166 2.962421 AGAAGAGCAGGTAGGTATGAGC 59.038 50.000 0.00 0.00 0.00 4.26
4190 6185 2.306805 AGCACAACATCATTCCCTCTGA 59.693 45.455 0.00 0.00 0.00 3.27
4191 6186 3.053842 AGCACAACATCATTCCCTCTGAT 60.054 43.478 0.00 0.00 33.65 2.90
4193 6188 4.883585 GCACAACATCATTCCCTCTGATTA 59.116 41.667 0.00 0.00 31.00 1.75
4194 6189 5.533903 GCACAACATCATTCCCTCTGATTAT 59.466 40.000 0.00 0.00 31.00 1.28
4198 6193 8.689972 ACAACATCATTCCCTCTGATTATTTTC 58.310 33.333 0.00 0.00 31.00 2.29
4200 6195 9.484806 AACATCATTCCCTCTGATTATTTTCTT 57.515 29.630 0.00 0.00 31.00 2.52
4344 6342 0.462581 GATGCTCCACGATCCAGCAA 60.463 55.000 7.23 0.00 45.99 3.91
4365 6363 1.205064 CTGGCACGCTGAAACGAAG 59.795 57.895 0.00 0.00 36.70 3.79
4367 6365 2.631428 GCACGCTGAAACGAAGCA 59.369 55.556 0.00 0.00 40.86 3.91
4368 6366 1.010125 GCACGCTGAAACGAAGCAA 60.010 52.632 0.00 0.00 40.86 3.91
4370 6368 1.821336 CACGCTGAAACGAAGCAAAA 58.179 45.000 0.00 0.00 40.86 2.44
4390 6388 2.338785 GCAAGGTGAAGCTCAGCCC 61.339 63.158 0.00 0.00 45.34 5.19
4394 6394 0.185901 AGGTGAAGCTCAGCCCAAAA 59.814 50.000 0.00 0.00 45.34 2.44
4411 6411 4.039609 CCCAAAAAGAAGAAGCCATGAAGT 59.960 41.667 0.00 0.00 0.00 3.01
4449 6461 6.426937 GCCAAGAACATGACTGTCTAACTAAA 59.573 38.462 9.51 0.00 33.36 1.85
4530 6551 0.396435 TGGCGGTTGTGATGAAGAGT 59.604 50.000 0.00 0.00 0.00 3.24
4554 6581 3.709633 AGCATGAGCCAGGACGCA 61.710 61.111 0.00 0.00 43.56 5.24
4592 6619 1.681166 CCTCCTCATGCCTCCTGTTTG 60.681 57.143 0.00 0.00 0.00 2.93
4593 6620 0.322816 TCCTCATGCCTCCTGTTTGC 60.323 55.000 0.00 0.00 0.00 3.68
4595 6622 0.809385 CTCATGCCTCCTGTTTGCTG 59.191 55.000 0.00 0.00 0.00 4.41
4597 6624 0.963962 CATGCCTCCTGTTTGCTGTT 59.036 50.000 0.00 0.00 0.00 3.16
4641 6675 2.505819 GGTTCAGAGCTTTCAGGGGATA 59.494 50.000 0.00 0.00 0.00 2.59
4642 6676 3.536570 GTTCAGAGCTTTCAGGGGATAC 58.463 50.000 0.00 0.00 0.00 2.24
4657 6691 3.199880 GGATACCACCACATCTCCTTG 57.800 52.381 0.00 0.00 0.00 3.61
4658 6692 2.505819 GGATACCACCACATCTCCTTGT 59.494 50.000 0.00 0.00 0.00 3.16
4659 6693 3.535561 GATACCACCACATCTCCTTGTG 58.464 50.000 0.00 0.00 45.28 3.33
4660 6694 1.140312 ACCACCACATCTCCTTGTGT 58.860 50.000 4.12 0.00 44.42 3.72
4661 6695 1.494721 ACCACCACATCTCCTTGTGTT 59.505 47.619 4.12 0.00 44.42 3.32
4662 6696 1.881973 CCACCACATCTCCTTGTGTTG 59.118 52.381 4.12 0.16 44.42 3.33
4663 6697 1.267806 CACCACATCTCCTTGTGTTGC 59.732 52.381 4.12 0.00 44.42 4.17
4666 6700 3.244875 ACCACATCTCCTTGTGTTGCATA 60.245 43.478 4.12 0.00 44.42 3.14
4668 6702 5.125356 CCACATCTCCTTGTGTTGCATATA 58.875 41.667 4.12 0.00 44.42 0.86
4669 6703 5.766670 CCACATCTCCTTGTGTTGCATATAT 59.233 40.000 4.12 0.00 44.42 0.86
4670 6704 6.936335 CCACATCTCCTTGTGTTGCATATATA 59.064 38.462 4.12 0.00 44.42 0.86
4671 6705 7.095060 CCACATCTCCTTGTGTTGCATATATAC 60.095 40.741 4.12 0.00 44.42 1.47
4672 6706 7.442062 CACATCTCCTTGTGTTGCATATATACA 59.558 37.037 0.00 0.00 41.65 2.29
4673 6707 8.159447 ACATCTCCTTGTGTTGCATATATACAT 58.841 33.333 0.00 0.00 0.00 2.29
4674 6708 8.663025 CATCTCCTTGTGTTGCATATATACATC 58.337 37.037 0.00 0.00 0.00 3.06
4675 6709 7.734942 TCTCCTTGTGTTGCATATATACATCA 58.265 34.615 0.00 0.00 0.00 3.07
4676 6710 7.874528 TCTCCTTGTGTTGCATATATACATCAG 59.125 37.037 0.00 0.00 0.00 2.90
4677 6711 7.508687 TCCTTGTGTTGCATATATACATCAGT 58.491 34.615 0.00 0.00 0.00 3.41
4678 6712 7.657354 TCCTTGTGTTGCATATATACATCAGTC 59.343 37.037 0.00 0.00 0.00 3.51
4679 6713 7.095060 CCTTGTGTTGCATATATACATCAGTCC 60.095 40.741 0.00 0.00 0.00 3.85
4680 6714 6.825610 TGTGTTGCATATATACATCAGTCCA 58.174 36.000 0.00 0.00 0.00 4.02
4681 6715 7.278875 TGTGTTGCATATATACATCAGTCCAA 58.721 34.615 0.00 0.00 0.00 3.53
4682 6716 7.442062 TGTGTTGCATATATACATCAGTCCAAG 59.558 37.037 0.00 0.00 0.00 3.61
4683 6717 7.442364 GTGTTGCATATATACATCAGTCCAAGT 59.558 37.037 0.00 0.00 0.00 3.16
4684 6718 7.657354 TGTTGCATATATACATCAGTCCAAGTC 59.343 37.037 0.00 0.00 0.00 3.01
4685 6719 7.301868 TGCATATATACATCAGTCCAAGTCA 57.698 36.000 0.00 0.00 0.00 3.41
4686 6720 7.734942 TGCATATATACATCAGTCCAAGTCAA 58.265 34.615 0.00 0.00 0.00 3.18
4687 6721 7.874528 TGCATATATACATCAGTCCAAGTCAAG 59.125 37.037 0.00 0.00 0.00 3.02
4688 6722 7.148507 GCATATATACATCAGTCCAAGTCAAGC 60.149 40.741 0.00 0.00 0.00 4.01
4689 6723 2.936919 ACATCAGTCCAAGTCAAGCA 57.063 45.000 0.00 0.00 0.00 3.91
4690 6724 3.213206 ACATCAGTCCAAGTCAAGCAA 57.787 42.857 0.00 0.00 0.00 3.91
4691 6725 3.554934 ACATCAGTCCAAGTCAAGCAAA 58.445 40.909 0.00 0.00 0.00 3.68
4692 6726 3.567164 ACATCAGTCCAAGTCAAGCAAAG 59.433 43.478 0.00 0.00 0.00 2.77
4693 6727 1.949525 TCAGTCCAAGTCAAGCAAAGC 59.050 47.619 0.00 0.00 0.00 3.51
4694 6728 0.947244 AGTCCAAGTCAAGCAAAGCG 59.053 50.000 0.00 0.00 0.00 4.68
4695 6729 0.040067 GTCCAAGTCAAGCAAAGCGG 60.040 55.000 0.00 0.00 0.00 5.52
4696 6730 1.372128 CCAAGTCAAGCAAAGCGGC 60.372 57.895 0.00 0.00 0.00 6.53
4698 6732 0.662374 CAAGTCAAGCAAAGCGGCTG 60.662 55.000 1.81 0.00 45.07 4.85
4717 6778 4.019681 GGCTGGGTGGTAAGTATATATGCA 60.020 45.833 3.52 0.00 0.00 3.96
4729 6790 7.418337 AAGTATATATGCATCCGTGTATGGA 57.582 36.000 0.19 0.00 43.58 3.41
4822 6885 3.798878 CGCAGTGTATATGTGGACTTGAG 59.201 47.826 0.00 0.00 0.00 3.02
4843 6906 2.584608 GCAGCGTATGTGGACCCT 59.415 61.111 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.282180 GAAGGTTTGCCCGGCTCA 60.282 61.111 11.61 0.00 38.74 4.26
63 64 4.879598 ACTTCCCGACTGTTTACTACAAG 58.120 43.478 0.00 0.00 36.02 3.16
72 73 1.285023 CGACGACTTCCCGACTGTT 59.715 57.895 0.00 0.00 0.00 3.16
113 114 2.595463 GGTTGCTGCTCTGGTGCA 60.595 61.111 0.00 0.00 41.05 4.57
114 115 1.930908 GATGGTTGCTGCTCTGGTGC 61.931 60.000 0.00 0.00 0.00 5.01
271 272 1.352156 GCGTTGTCGGAGGATGTGTC 61.352 60.000 0.00 0.00 37.56 3.67
324 325 3.709653 TCCCTCGGTAGCAATATTGTCTT 59.290 43.478 16.61 6.01 0.00 3.01
330 331 2.231478 CGATGTCCCTCGGTAGCAATAT 59.769 50.000 0.00 0.00 35.03 1.28
385 386 2.409975 CCCGTTCTCGTTTTTGCTAGA 58.590 47.619 0.00 0.00 35.01 2.43
417 418 2.764128 GATCTCGGACCCCTGCCA 60.764 66.667 0.00 0.00 0.00 4.92
421 422 2.609920 GGAGGATCTCGGACCCCT 59.390 66.667 0.00 0.00 33.73 4.79
426 427 2.833582 GGTGCGGAGGATCTCGGA 60.834 66.667 6.66 0.00 33.52 4.55
451 452 1.227973 GCCTCCGATGGCCTTTAGG 60.228 63.158 3.32 7.71 46.82 2.69
497 498 4.202514 CCAAGAAAAGTCTCCTTCCTCCTT 60.203 45.833 0.00 0.00 30.70 3.36
531 533 5.819901 CACAACTCTCTCTTTCTCCAAAGTT 59.180 40.000 0.00 0.00 40.16 2.66
535 537 4.895889 TCTCACAACTCTCTCTTTCTCCAA 59.104 41.667 0.00 0.00 0.00 3.53
536 538 4.474394 TCTCACAACTCTCTCTTTCTCCA 58.526 43.478 0.00 0.00 0.00 3.86
537 539 4.082245 CCTCTCACAACTCTCTCTTTCTCC 60.082 50.000 0.00 0.00 0.00 3.71
538 540 4.618227 GCCTCTCACAACTCTCTCTTTCTC 60.618 50.000 0.00 0.00 0.00 2.87
539 541 3.258123 GCCTCTCACAACTCTCTCTTTCT 59.742 47.826 0.00 0.00 0.00 2.52
540 542 3.006323 TGCCTCTCACAACTCTCTCTTTC 59.994 47.826 0.00 0.00 0.00 2.62
541 543 2.968574 TGCCTCTCACAACTCTCTCTTT 59.031 45.455 0.00 0.00 0.00 2.52
542 544 2.603021 TGCCTCTCACAACTCTCTCTT 58.397 47.619 0.00 0.00 0.00 2.85
543 545 2.298729 GTTGCCTCTCACAACTCTCTCT 59.701 50.000 0.00 0.00 43.23 3.10
544 546 2.036475 TGTTGCCTCTCACAACTCTCTC 59.964 50.000 7.99 0.00 46.03 3.20
545 547 2.042464 TGTTGCCTCTCACAACTCTCT 58.958 47.619 7.99 0.00 46.03 3.10
546 548 2.139118 GTGTTGCCTCTCACAACTCTC 58.861 52.381 7.99 0.00 46.03 3.20
547 549 1.202698 GGTGTTGCCTCTCACAACTCT 60.203 52.381 7.99 0.00 46.03 3.24
548 550 1.202698 AGGTGTTGCCTCTCACAACTC 60.203 52.381 7.99 4.53 46.96 3.01
549 551 0.839946 AGGTGTTGCCTCTCACAACT 59.160 50.000 7.99 0.00 46.96 3.16
550 552 2.543777 TAGGTGTTGCCTCTCACAAC 57.456 50.000 0.00 0.00 46.96 3.32
551 553 3.788227 ATTAGGTGTTGCCTCTCACAA 57.212 42.857 0.00 0.00 46.96 3.33
552 554 3.788227 AATTAGGTGTTGCCTCTCACA 57.212 42.857 0.00 0.00 46.96 3.58
553 555 4.072131 TCAAATTAGGTGTTGCCTCTCAC 58.928 43.478 0.00 0.00 46.96 3.51
554 556 4.041567 TCTCAAATTAGGTGTTGCCTCTCA 59.958 41.667 0.00 0.00 46.96 3.27
555 557 4.579869 TCTCAAATTAGGTGTTGCCTCTC 58.420 43.478 0.00 0.00 46.96 3.20
556 558 4.640771 TCTCAAATTAGGTGTTGCCTCT 57.359 40.909 0.00 0.00 46.96 3.69
557 559 7.573968 AATATCTCAAATTAGGTGTTGCCTC 57.426 36.000 0.00 0.00 46.96 4.70
559 561 7.547227 ACAAATATCTCAAATTAGGTGTTGCC 58.453 34.615 0.00 0.00 37.58 4.52
560 562 8.986477 AACAAATATCTCAAATTAGGTGTTGC 57.014 30.769 0.00 0.00 0.00 4.17
572 574 9.443323 TCCGTTTGAGAATAACAAATATCTCAA 57.557 29.630 11.77 11.77 35.48 3.02
573 575 8.879759 GTCCGTTTGAGAATAACAAATATCTCA 58.120 33.333 0.46 0.46 31.80 3.27
574 576 8.056571 CGTCCGTTTGAGAATAACAAATATCTC 58.943 37.037 0.00 0.00 0.00 2.75
575 577 7.762615 TCGTCCGTTTGAGAATAACAAATATCT 59.237 33.333 0.00 0.00 0.00 1.98
576 578 7.902032 TCGTCCGTTTGAGAATAACAAATATC 58.098 34.615 0.00 0.00 0.00 1.63
577 579 7.762615 TCTCGTCCGTTTGAGAATAACAAATAT 59.237 33.333 0.00 0.00 38.25 1.28
578 580 7.092079 TCTCGTCCGTTTGAGAATAACAAATA 58.908 34.615 0.00 0.00 38.25 1.40
579 581 5.929992 TCTCGTCCGTTTGAGAATAACAAAT 59.070 36.000 0.00 0.00 38.25 2.32
580 582 5.291178 TCTCGTCCGTTTGAGAATAACAAA 58.709 37.500 0.00 0.00 38.25 2.83
581 583 4.873817 TCTCGTCCGTTTGAGAATAACAA 58.126 39.130 0.00 0.00 38.25 2.83
582 584 4.508461 TCTCGTCCGTTTGAGAATAACA 57.492 40.909 0.00 0.00 38.25 2.41
583 585 4.259850 GCATCTCGTCCGTTTGAGAATAAC 60.260 45.833 2.44 0.00 43.89 1.89
584 586 3.863424 GCATCTCGTCCGTTTGAGAATAA 59.137 43.478 2.44 0.00 43.89 1.40
585 587 3.444916 GCATCTCGTCCGTTTGAGAATA 58.555 45.455 2.44 0.00 43.89 1.75
586 588 2.271800 GCATCTCGTCCGTTTGAGAAT 58.728 47.619 2.44 0.00 43.89 2.40
587 589 1.710013 GCATCTCGTCCGTTTGAGAA 58.290 50.000 2.44 0.00 43.89 2.87
588 590 0.456142 CGCATCTCGTCCGTTTGAGA 60.456 55.000 0.98 0.98 44.71 3.27
589 591 1.413767 CCGCATCTCGTCCGTTTGAG 61.414 60.000 0.00 0.00 36.19 3.02
590 592 1.445410 CCGCATCTCGTCCGTTTGA 60.445 57.895 0.00 0.00 36.19 2.69
591 593 3.081133 CCGCATCTCGTCCGTTTG 58.919 61.111 0.00 0.00 36.19 2.93
592 594 2.813908 GCCGCATCTCGTCCGTTT 60.814 61.111 0.00 0.00 36.19 3.60
593 595 4.814294 GGCCGCATCTCGTCCGTT 62.814 66.667 0.00 0.00 36.19 4.44
596 598 4.508128 TTCGGCCGCATCTCGTCC 62.508 66.667 23.51 0.00 36.19 4.79
597 599 1.883084 ATTTCGGCCGCATCTCGTC 60.883 57.895 23.51 0.00 36.19 4.20
598 600 2.173669 CATTTCGGCCGCATCTCGT 61.174 57.895 23.51 0.00 36.19 4.18
599 601 2.628106 CATTTCGGCCGCATCTCG 59.372 61.111 23.51 2.10 38.08 4.04
600 602 2.329339 GCATTTCGGCCGCATCTC 59.671 61.111 23.51 5.45 0.00 2.75
601 603 3.576356 CGCATTTCGGCCGCATCT 61.576 61.111 23.51 1.22 33.78 2.90
602 604 2.770587 GATCGCATTTCGGCCGCATC 62.771 60.000 23.51 8.68 39.05 3.91
603 605 2.896801 GATCGCATTTCGGCCGCAT 61.897 57.895 23.51 12.50 39.05 4.73
604 606 3.572539 GATCGCATTTCGGCCGCA 61.573 61.111 23.51 6.92 39.05 5.69
605 607 3.228688 GAGATCGCATTTCGGCCGC 62.229 63.158 23.51 4.55 39.05 6.53
606 608 1.224069 ATGAGATCGCATTTCGGCCG 61.224 55.000 22.12 22.12 39.05 6.13
607 609 0.947244 AATGAGATCGCATTTCGGCC 59.053 50.000 17.76 0.00 35.01 6.13
608 610 2.096218 GGTAATGAGATCGCATTTCGGC 60.096 50.000 26.44 15.23 39.15 5.54
609 611 3.059597 GTGGTAATGAGATCGCATTTCGG 60.060 47.826 26.44 0.00 39.15 4.30
610 612 3.804325 AGTGGTAATGAGATCGCATTTCG 59.196 43.478 26.44 0.00 39.15 3.46
611 613 4.212214 GGAGTGGTAATGAGATCGCATTTC 59.788 45.833 26.44 21.31 39.15 2.17
612 614 4.130118 GGAGTGGTAATGAGATCGCATTT 58.870 43.478 26.44 10.92 39.15 2.32
613 615 3.134623 TGGAGTGGTAATGAGATCGCATT 59.865 43.478 24.99 24.99 41.15 3.56
614 616 2.700371 TGGAGTGGTAATGAGATCGCAT 59.300 45.455 6.07 6.07 0.00 4.73
615 617 2.107366 TGGAGTGGTAATGAGATCGCA 58.893 47.619 0.28 0.28 0.00 5.10
616 618 2.890808 TGGAGTGGTAATGAGATCGC 57.109 50.000 0.00 0.00 0.00 4.58
617 619 3.551890 CGTTTGGAGTGGTAATGAGATCG 59.448 47.826 0.00 0.00 0.00 3.69
618 620 3.871594 CCGTTTGGAGTGGTAATGAGATC 59.128 47.826 0.00 0.00 37.49 2.75
619 621 3.517901 TCCGTTTGGAGTGGTAATGAGAT 59.482 43.478 0.00 0.00 40.17 2.75
620 622 2.901192 TCCGTTTGGAGTGGTAATGAGA 59.099 45.455 0.00 0.00 40.17 3.27
621 623 3.328382 TCCGTTTGGAGTGGTAATGAG 57.672 47.619 0.00 0.00 40.17 2.90
633 635 1.068816 GTCCGGTTTTCATCCGTTTGG 60.069 52.381 0.00 0.00 45.63 3.28
634 636 1.399215 CGTCCGGTTTTCATCCGTTTG 60.399 52.381 0.00 0.00 45.63 2.93
635 637 0.869730 CGTCCGGTTTTCATCCGTTT 59.130 50.000 0.00 0.00 45.63 3.60
636 638 0.033781 TCGTCCGGTTTTCATCCGTT 59.966 50.000 0.00 0.00 45.63 4.44
637 639 0.033781 TTCGTCCGGTTTTCATCCGT 59.966 50.000 0.00 0.00 45.63 4.69
638 640 1.136169 GTTTCGTCCGGTTTTCATCCG 60.136 52.381 0.00 0.00 46.49 4.18
639 641 1.874872 TGTTTCGTCCGGTTTTCATCC 59.125 47.619 0.00 0.00 0.00 3.51
640 642 2.803956 TCTGTTTCGTCCGGTTTTCATC 59.196 45.455 0.00 0.00 0.00 2.92
641 643 2.546789 GTCTGTTTCGTCCGGTTTTCAT 59.453 45.455 0.00 0.00 0.00 2.57
642 644 1.935199 GTCTGTTTCGTCCGGTTTTCA 59.065 47.619 0.00 0.00 0.00 2.69
643 645 1.071041 CGTCTGTTTCGTCCGGTTTTC 60.071 52.381 0.00 0.00 0.00 2.29
644 646 0.932399 CGTCTGTTTCGTCCGGTTTT 59.068 50.000 0.00 0.00 0.00 2.43
645 647 0.179103 ACGTCTGTTTCGTCCGGTTT 60.179 50.000 0.00 0.00 36.85 3.27
646 648 1.438814 ACGTCTGTTTCGTCCGGTT 59.561 52.632 0.00 0.00 36.85 4.44
647 649 3.122850 ACGTCTGTTTCGTCCGGT 58.877 55.556 0.00 0.00 36.85 5.28
652 654 1.871039 CCAAATGGACGTCTGTTTCGT 59.129 47.619 16.46 0.00 44.27 3.85
653 655 1.196808 CCCAAATGGACGTCTGTTTCG 59.803 52.381 16.46 9.22 37.39 3.46
654 656 1.539827 CCCCAAATGGACGTCTGTTTC 59.460 52.381 16.46 0.00 37.39 2.78
655 657 1.133606 ACCCCAAATGGACGTCTGTTT 60.134 47.619 16.46 13.33 37.39 2.83
656 658 0.476771 ACCCCAAATGGACGTCTGTT 59.523 50.000 16.46 7.79 37.39 3.16
657 659 0.476771 AACCCCAAATGGACGTCTGT 59.523 50.000 16.46 1.11 37.39 3.41
658 660 0.881118 CAACCCCAAATGGACGTCTG 59.119 55.000 16.46 5.49 37.39 3.51
659 661 0.476771 ACAACCCCAAATGGACGTCT 59.523 50.000 16.46 0.00 37.39 4.18
660 662 0.596082 CACAACCCCAAATGGACGTC 59.404 55.000 7.13 7.13 37.39 4.34
661 663 0.106419 ACACAACCCCAAATGGACGT 60.106 50.000 0.00 0.00 37.39 4.34
662 664 0.313672 CACACAACCCCAAATGGACG 59.686 55.000 0.00 0.00 37.39 4.79
663 665 1.408969 ACACACAACCCCAAATGGAC 58.591 50.000 0.00 0.00 37.39 4.02
664 666 1.759445 CAACACACAACCCCAAATGGA 59.241 47.619 0.00 0.00 37.39 3.41
665 667 1.202627 CCAACACACAACCCCAAATGG 60.203 52.381 0.00 0.00 0.00 3.16
666 668 1.759445 TCCAACACACAACCCCAAATG 59.241 47.619 0.00 0.00 0.00 2.32
667 669 2.038659 CTCCAACACACAACCCCAAAT 58.961 47.619 0.00 0.00 0.00 2.32
668 670 1.272760 ACTCCAACACACAACCCCAAA 60.273 47.619 0.00 0.00 0.00 3.28
669 671 0.333312 ACTCCAACACACAACCCCAA 59.667 50.000 0.00 0.00 0.00 4.12
670 672 0.333312 AACTCCAACACACAACCCCA 59.667 50.000 0.00 0.00 0.00 4.96
671 673 0.744281 CAACTCCAACACACAACCCC 59.256 55.000 0.00 0.00 0.00 4.95
672 674 0.102300 GCAACTCCAACACACAACCC 59.898 55.000 0.00 0.00 0.00 4.11
673 675 0.102300 GGCAACTCCAACACACAACC 59.898 55.000 0.00 0.00 34.01 3.77
674 676 0.102300 GGGCAACTCCAACACACAAC 59.898 55.000 0.00 0.00 36.21 3.32
675 677 0.033601 AGGGCAACTCCAACACACAA 60.034 50.000 0.00 0.00 36.21 3.33
676 678 0.033601 AAGGGCAACTCCAACACACA 60.034 50.000 0.00 0.00 36.21 3.72
677 679 1.975660 TAAGGGCAACTCCAACACAC 58.024 50.000 0.00 0.00 36.21 3.82
678 680 2.691011 GTTTAAGGGCAACTCCAACACA 59.309 45.455 0.00 0.00 36.21 3.72
679 681 2.035449 GGTTTAAGGGCAACTCCAACAC 59.965 50.000 0.00 0.00 36.21 3.32
680 682 2.312390 GGTTTAAGGGCAACTCCAACA 58.688 47.619 0.00 0.00 36.21 3.33
681 683 1.616865 GGGTTTAAGGGCAACTCCAAC 59.383 52.381 0.00 0.00 36.21 3.77
682 684 1.820090 CGGGTTTAAGGGCAACTCCAA 60.820 52.381 0.00 0.00 36.21 3.53
683 685 0.250989 CGGGTTTAAGGGCAACTCCA 60.251 55.000 0.00 0.00 36.21 3.86
684 686 0.037160 TCGGGTTTAAGGGCAACTCC 59.963 55.000 0.00 0.00 0.00 3.85
685 687 1.271217 ACTCGGGTTTAAGGGCAACTC 60.271 52.381 0.00 0.00 0.00 3.01
688 690 0.037160 GGACTCGGGTTTAAGGGCAA 59.963 55.000 0.00 0.00 0.00 4.52
728 730 1.080995 GTGCGAGCAGGCTTACAGAG 61.081 60.000 0.00 0.00 0.00 3.35
729 731 1.079819 GTGCGAGCAGGCTTACAGA 60.080 57.895 0.00 0.00 0.00 3.41
732 734 1.941325 AATAGTGCGAGCAGGCTTAC 58.059 50.000 0.00 0.00 0.00 2.34
733 735 2.691409 AAATAGTGCGAGCAGGCTTA 57.309 45.000 0.00 0.00 0.00 3.09
734 736 2.280628 GTAAATAGTGCGAGCAGGCTT 58.719 47.619 0.00 0.00 0.00 4.35
736 738 0.938008 GGTAAATAGTGCGAGCAGGC 59.062 55.000 0.00 0.00 0.00 4.85
737 739 2.159099 TCAGGTAAATAGTGCGAGCAGG 60.159 50.000 0.00 0.00 0.00 4.85
739 741 2.232696 TGTCAGGTAAATAGTGCGAGCA 59.767 45.455 0.00 0.00 0.00 4.26
783 808 0.617935 AGGAAAGGAGCAGAGAAGGC 59.382 55.000 0.00 0.00 0.00 4.35
839 864 2.427812 GGGACTAGCTACTGTGAGGTTC 59.572 54.545 0.00 0.00 0.00 3.62
902 935 0.391597 GGAGTTGGTGGTCGTTGAGA 59.608 55.000 0.00 0.00 0.00 3.27
903 936 0.602905 GGGAGTTGGTGGTCGTTGAG 60.603 60.000 0.00 0.00 0.00 3.02
904 937 1.338890 TGGGAGTTGGTGGTCGTTGA 61.339 55.000 0.00 0.00 0.00 3.18
905 938 0.464735 TTGGGAGTTGGTGGTCGTTG 60.465 55.000 0.00 0.00 0.00 4.10
906 939 0.256464 TTTGGGAGTTGGTGGTCGTT 59.744 50.000 0.00 0.00 0.00 3.85
907 940 0.476771 ATTTGGGAGTTGGTGGTCGT 59.523 50.000 0.00 0.00 0.00 4.34
908 941 1.165270 GATTTGGGAGTTGGTGGTCG 58.835 55.000 0.00 0.00 0.00 4.79
909 942 1.545841 GGATTTGGGAGTTGGTGGTC 58.454 55.000 0.00 0.00 0.00 4.02
1152 1189 3.072468 TTCCCGATCCGGTTCGCT 61.072 61.111 26.00 0.00 46.80 4.93
1218 1255 1.363807 CATGACCTCGATGCCGCTA 59.636 57.895 0.00 0.00 35.37 4.26
1419 1459 7.559897 GGAATCCCAAAATAAGAATCACCACTA 59.440 37.037 0.00 0.00 0.00 2.74
1424 1464 7.410120 ACAGGAATCCCAAAATAAGAATCAC 57.590 36.000 0.00 0.00 33.88 3.06
1437 1477 3.519510 CCTCTCAACTAACAGGAATCCCA 59.480 47.826 0.00 0.00 33.88 4.37
1451 1491 4.766891 TGAATTCCACATTTCCCTCTCAAC 59.233 41.667 2.27 0.00 0.00 3.18
1522 1562 4.399303 CCCTTTTCCACCAAAGCTACATAG 59.601 45.833 0.00 0.00 33.08 2.23
1532 1572 2.178984 ACCAGATTCCCTTTTCCACCAA 59.821 45.455 0.00 0.00 0.00 3.67
1533 1573 1.786441 ACCAGATTCCCTTTTCCACCA 59.214 47.619 0.00 0.00 0.00 4.17
1534 1574 2.171003 CACCAGATTCCCTTTTCCACC 58.829 52.381 0.00 0.00 0.00 4.61
1586 1626 4.019792 TCAATTGAACTAAGCAGCTCCA 57.980 40.909 5.45 0.00 0.00 3.86
1684 1724 7.013655 ACTGAGCATTGACAAGTAGAAACAAAT 59.986 33.333 0.00 0.00 0.00 2.32
1685 1725 6.318648 ACTGAGCATTGACAAGTAGAAACAAA 59.681 34.615 0.00 0.00 0.00 2.83
1686 1726 5.822519 ACTGAGCATTGACAAGTAGAAACAA 59.177 36.000 0.00 0.00 0.00 2.83
1687 1727 5.368145 ACTGAGCATTGACAAGTAGAAACA 58.632 37.500 0.00 0.00 0.00 2.83
1896 1951 9.280174 CCTTAGTAATGACTTAAAGTCCAAACA 57.720 33.333 0.00 0.00 44.44 2.83
1955 2010 7.201530 GGTGATTCAGTGGACTTAAAGTAATCG 60.202 40.741 0.00 0.00 0.00 3.34
2363 2515 4.937696 TTAATCACAGTGTGGTATTGCG 57.062 40.909 22.79 0.00 33.87 4.85
2406 2558 3.956848 GAGTAGTACAATAGTTCCCGGGT 59.043 47.826 22.86 3.24 0.00 5.28
2429 2581 9.898152 GCAGATAGGGATTATTAATAGAAAGCT 57.102 33.333 0.00 0.00 0.00 3.74
2430 2582 9.898152 AGCAGATAGGGATTATTAATAGAAAGC 57.102 33.333 0.00 0.00 0.00 3.51
2432 2584 9.672673 GCAGCAGATAGGGATTATTAATAGAAA 57.327 33.333 0.00 0.00 0.00 2.52
2434 2586 8.615360 AGCAGCAGATAGGGATTATTAATAGA 57.385 34.615 0.00 0.00 0.00 1.98
2435 2587 9.757227 GTAGCAGCAGATAGGGATTATTAATAG 57.243 37.037 0.00 0.00 0.00 1.73
2436 2588 8.705594 GGTAGCAGCAGATAGGGATTATTAATA 58.294 37.037 0.00 0.00 0.00 0.98
2437 2589 7.182749 TGGTAGCAGCAGATAGGGATTATTAAT 59.817 37.037 0.00 0.00 0.00 1.40
2438 2590 6.500400 TGGTAGCAGCAGATAGGGATTATTAA 59.500 38.462 0.00 0.00 0.00 1.40
2503 2656 7.311092 TGGACAGTCTAAATTACTTGAAGGA 57.689 36.000 0.00 0.00 0.00 3.36
2531 2684 5.677319 ACGAAGAGTATCCCAATGAAAGA 57.323 39.130 0.00 0.00 33.66 2.52
2532 2685 6.743575 AAACGAAGAGTATCCCAATGAAAG 57.256 37.500 0.00 0.00 33.66 2.62
2535 2688 6.148811 GTGAAAAACGAAGAGTATCCCAATGA 59.851 38.462 0.00 0.00 33.66 2.57
2536 2689 6.149474 AGTGAAAAACGAAGAGTATCCCAATG 59.851 38.462 0.00 0.00 33.66 2.82
2537 2690 6.149474 CAGTGAAAAACGAAGAGTATCCCAAT 59.851 38.462 0.00 0.00 33.66 3.16
2539 2692 4.994852 CAGTGAAAAACGAAGAGTATCCCA 59.005 41.667 0.00 0.00 33.66 4.37
2540 2693 5.235516 TCAGTGAAAAACGAAGAGTATCCC 58.764 41.667 0.00 0.00 33.66 3.85
2551 2706 5.626543 CCAAATCTGTGATCAGTGAAAAACG 59.373 40.000 0.00 0.00 41.91 3.60
2599 2754 5.683876 ACCTCAATGCAGACATTACTAGT 57.316 39.130 0.00 0.00 44.83 2.57
2600 2755 7.928167 TCATAACCTCAATGCAGACATTACTAG 59.072 37.037 0.00 0.00 44.83 2.57
2603 2758 6.925610 TCATAACCTCAATGCAGACATTAC 57.074 37.500 0.00 0.00 44.83 1.89
2604 2759 6.487668 CCATCATAACCTCAATGCAGACATTA 59.512 38.462 0.00 0.00 44.83 1.90
2606 2761 4.825634 CCATCATAACCTCAATGCAGACAT 59.174 41.667 0.00 0.00 38.49 3.06
2607 2762 4.201657 CCATCATAACCTCAATGCAGACA 58.798 43.478 0.00 0.00 0.00 3.41
2608 2763 4.036027 CACCATCATAACCTCAATGCAGAC 59.964 45.833 0.00 0.00 0.00 3.51
2610 2765 4.036027 GTCACCATCATAACCTCAATGCAG 59.964 45.833 0.00 0.00 0.00 4.41
2615 2771 3.259625 TGACGTCACCATCATAACCTCAA 59.740 43.478 15.76 0.00 0.00 3.02
2619 2775 6.706270 AGATAAATGACGTCACCATCATAACC 59.294 38.462 22.71 2.95 34.41 2.85
2650 2902 8.185505 GTCATGTGCCCGTAAATAGATTAAAAA 58.814 33.333 0.00 0.00 0.00 1.94
2651 2903 7.554835 AGTCATGTGCCCGTAAATAGATTAAAA 59.445 33.333 0.00 0.00 0.00 1.52
2652 2904 7.051623 AGTCATGTGCCCGTAAATAGATTAAA 58.948 34.615 0.00 0.00 0.00 1.52
2653 2905 6.588204 AGTCATGTGCCCGTAAATAGATTAA 58.412 36.000 0.00 0.00 0.00 1.40
2654 2906 6.169557 AGTCATGTGCCCGTAAATAGATTA 57.830 37.500 0.00 0.00 0.00 1.75
2655 2907 5.036117 AGTCATGTGCCCGTAAATAGATT 57.964 39.130 0.00 0.00 0.00 2.40
2659 2911 4.986034 CGAATAGTCATGTGCCCGTAAATA 59.014 41.667 0.00 0.00 0.00 1.40
2683 2935 6.569179 ACGCAGTAAACAAGTATGGAAAAT 57.431 33.333 0.00 0.00 41.94 1.82
2723 2983 9.203421 CAGCAATATACCTGTATCAAATTCGTA 57.797 33.333 0.00 0.00 0.00 3.43
2724 2984 7.715249 ACAGCAATATACCTGTATCAAATTCGT 59.285 33.333 6.44 0.00 40.30 3.85
2725 2985 8.011673 CACAGCAATATACCTGTATCAAATTCG 58.988 37.037 7.60 0.00 40.12 3.34
2726 2986 8.292448 CCACAGCAATATACCTGTATCAAATTC 58.708 37.037 7.60 0.00 40.12 2.17
2859 3119 1.816835 CACGGGACTACTAGCTTCACA 59.183 52.381 0.00 0.00 0.00 3.58
3241 3501 4.371624 TGATGAGTCCTTGGTTGAATGT 57.628 40.909 0.00 0.00 0.00 2.71
3582 3842 4.308458 CCGTTGCACGACCCTCCA 62.308 66.667 9.75 0.00 46.05 3.86
4044 6006 7.016361 ACATTAAATCAAGATTACTCACCGC 57.984 36.000 0.00 0.00 0.00 5.68
4045 6040 8.276325 GCTACATTAAATCAAGATTACTCACCG 58.724 37.037 0.00 0.00 0.00 4.94
4054 6049 8.627403 CATTCAGGTGCTACATTAAATCAAGAT 58.373 33.333 0.00 0.00 0.00 2.40
4064 6059 3.689347 TGCTTCATTCAGGTGCTACATT 58.311 40.909 0.00 0.00 0.00 2.71
4129 6124 6.141560 TCTGTGAGCATGTAATAGTCTCTG 57.858 41.667 0.00 0.00 0.00 3.35
4163 6158 3.316308 GGGAATGATGTTGTGCTCATACC 59.684 47.826 0.00 0.00 31.95 2.73
4171 6166 7.578310 AATAATCAGAGGGAATGATGTTGTG 57.422 36.000 0.00 0.00 37.46 3.33
4212 6208 5.581085 GCTTGTTCATCGGTAATACAGAAGT 59.419 40.000 0.00 0.00 0.00 3.01
4344 6342 2.534019 CGTTTCAGCGTGCCAGTGT 61.534 57.895 0.00 0.00 0.00 3.55
4365 6363 0.249031 AGCTTCACCTTGCGTTTTGC 60.249 50.000 0.00 0.00 46.70 3.68
4367 6365 1.334869 CTGAGCTTCACCTTGCGTTTT 59.665 47.619 0.00 0.00 0.00 2.43
4368 6366 0.947244 CTGAGCTTCACCTTGCGTTT 59.053 50.000 0.00 0.00 0.00 3.60
4370 6368 1.963338 GCTGAGCTTCACCTTGCGT 60.963 57.895 0.00 0.00 0.00 5.24
4390 6388 6.275335 TCAACTTCATGGCTTCTTCTTTTTG 58.725 36.000 0.00 0.00 0.00 2.44
4394 6394 5.048224 CACATCAACTTCATGGCTTCTTCTT 60.048 40.000 0.00 0.00 0.00 2.52
4411 6411 2.203470 TCTTGGCATGCTCACATCAA 57.797 45.000 18.92 10.89 32.87 2.57
4554 6581 1.545706 GGAACACTCTCCTCGCCCTT 61.546 60.000 0.00 0.00 32.21 3.95
4592 6619 3.067320 GCATATCAAGAGGGGAAAACAGC 59.933 47.826 0.00 0.00 0.00 4.40
4593 6620 4.530875 AGCATATCAAGAGGGGAAAACAG 58.469 43.478 0.00 0.00 0.00 3.16
4595 6622 4.949856 TGAAGCATATCAAGAGGGGAAAAC 59.050 41.667 0.00 0.00 0.00 2.43
4597 6624 4.526970 GTGAAGCATATCAAGAGGGGAAA 58.473 43.478 0.00 0.00 0.00 3.13
4647 6681 7.508687 TGTATATATGCAACACAAGGAGATGT 58.491 34.615 0.45 0.00 0.00 3.06
4648 6682 7.967890 TGTATATATGCAACACAAGGAGATG 57.032 36.000 0.45 0.00 0.00 2.90
4649 6683 8.377799 TGATGTATATATGCAACACAAGGAGAT 58.622 33.333 7.62 0.00 0.00 2.75
4651 6685 7.658982 ACTGATGTATATATGCAACACAAGGAG 59.341 37.037 7.62 1.81 0.00 3.69
4652 6686 7.508687 ACTGATGTATATATGCAACACAAGGA 58.491 34.615 7.62 0.00 0.00 3.36
4653 6687 7.095060 GGACTGATGTATATATGCAACACAAGG 60.095 40.741 7.62 2.76 0.00 3.61
4654 6688 7.442062 TGGACTGATGTATATATGCAACACAAG 59.558 37.037 7.62 3.08 0.00 3.16
4655 6689 7.278875 TGGACTGATGTATATATGCAACACAA 58.721 34.615 7.62 0.00 0.00 3.33
4656 6690 6.825610 TGGACTGATGTATATATGCAACACA 58.174 36.000 7.62 7.75 0.00 3.72
4657 6691 7.442364 ACTTGGACTGATGTATATATGCAACAC 59.558 37.037 7.62 1.21 0.00 3.32
4658 6692 7.508687 ACTTGGACTGATGTATATATGCAACA 58.491 34.615 12.08 12.08 0.00 3.33
4659 6693 7.657354 TGACTTGGACTGATGTATATATGCAAC 59.343 37.037 7.62 5.90 0.00 4.17
4660 6694 7.734942 TGACTTGGACTGATGTATATATGCAA 58.265 34.615 7.62 0.00 0.00 4.08
4661 6695 7.301868 TGACTTGGACTGATGTATATATGCA 57.698 36.000 5.94 5.94 0.00 3.96
4662 6696 7.148507 GCTTGACTTGGACTGATGTATATATGC 60.149 40.741 0.00 0.00 0.00 3.14
4663 6697 7.874528 TGCTTGACTTGGACTGATGTATATATG 59.125 37.037 0.00 0.00 0.00 1.78
4666 6700 6.239217 TGCTTGACTTGGACTGATGTATAT 57.761 37.500 0.00 0.00 0.00 0.86
4668 6702 4.558226 TGCTTGACTTGGACTGATGTAT 57.442 40.909 0.00 0.00 0.00 2.29
4669 6703 4.350368 TTGCTTGACTTGGACTGATGTA 57.650 40.909 0.00 0.00 0.00 2.29
4670 6704 2.936919 TGCTTGACTTGGACTGATGT 57.063 45.000 0.00 0.00 0.00 3.06
4671 6705 3.611057 GCTTTGCTTGACTTGGACTGATG 60.611 47.826 0.00 0.00 0.00 3.07
4672 6706 2.555757 GCTTTGCTTGACTTGGACTGAT 59.444 45.455 0.00 0.00 0.00 2.90
4673 6707 1.949525 GCTTTGCTTGACTTGGACTGA 59.050 47.619 0.00 0.00 0.00 3.41
4674 6708 1.334419 CGCTTTGCTTGACTTGGACTG 60.334 52.381 0.00 0.00 0.00 3.51
4675 6709 0.947244 CGCTTTGCTTGACTTGGACT 59.053 50.000 0.00 0.00 0.00 3.85
4676 6710 0.040067 CCGCTTTGCTTGACTTGGAC 60.040 55.000 0.00 0.00 0.00 4.02
4677 6711 1.795170 GCCGCTTTGCTTGACTTGGA 61.795 55.000 0.00 0.00 0.00 3.53
4678 6712 1.372128 GCCGCTTTGCTTGACTTGG 60.372 57.895 0.00 0.00 0.00 3.61
4679 6713 0.662374 CAGCCGCTTTGCTTGACTTG 60.662 55.000 0.00 0.00 40.32 3.16
4680 6714 1.656441 CAGCCGCTTTGCTTGACTT 59.344 52.632 0.00 0.00 40.32 3.01
4681 6715 2.263741 CCAGCCGCTTTGCTTGACT 61.264 57.895 0.00 0.00 40.32 3.41
4682 6716 2.256461 CCAGCCGCTTTGCTTGAC 59.744 61.111 0.00 0.00 40.32 3.18
4683 6717 2.985282 CCCAGCCGCTTTGCTTGA 60.985 61.111 0.00 0.00 40.32 3.02
4684 6718 3.297620 ACCCAGCCGCTTTGCTTG 61.298 61.111 0.00 0.00 40.32 4.01
4685 6719 3.297620 CACCCAGCCGCTTTGCTT 61.298 61.111 0.00 0.00 40.32 3.91
4688 6722 1.586154 CTTACCACCCAGCCGCTTTG 61.586 60.000 0.00 0.00 0.00 2.77
4689 6723 1.303317 CTTACCACCCAGCCGCTTT 60.303 57.895 0.00 0.00 0.00 3.51
4690 6724 1.196104 TACTTACCACCCAGCCGCTT 61.196 55.000 0.00 0.00 0.00 4.68
4691 6725 0.981277 ATACTTACCACCCAGCCGCT 60.981 55.000 0.00 0.00 0.00 5.52
4692 6726 0.754472 TATACTTACCACCCAGCCGC 59.246 55.000 0.00 0.00 0.00 6.53
4693 6727 4.755411 CATATATACTTACCACCCAGCCG 58.245 47.826 0.00 0.00 0.00 5.52
4694 6728 4.019681 TGCATATATACTTACCACCCAGCC 60.020 45.833 0.00 0.00 0.00 4.85
4695 6729 5.160607 TGCATATATACTTACCACCCAGC 57.839 43.478 0.00 0.00 0.00 4.85
4696 6730 6.349300 GGATGCATATATACTTACCACCCAG 58.651 44.000 0.00 0.00 0.00 4.45
4697 6731 5.105106 CGGATGCATATATACTTACCACCCA 60.105 44.000 0.00 0.00 0.00 4.51
4698 6732 5.105064 ACGGATGCATATATACTTACCACCC 60.105 44.000 0.00 0.00 0.00 4.61
4717 6778 0.753262 GAGCCAGTCCATACACGGAT 59.247 55.000 0.00 0.00 37.41 4.18
4729 6790 2.826128 TCTTATCACAAGTCGAGCCAGT 59.174 45.455 0.00 0.00 0.00 4.00
4822 6885 1.215655 GGTCCACATACGCTGCGATC 61.216 60.000 30.47 0.00 0.00 3.69
4843 6906 3.897325 GACAACATGACTAGTCGACACA 58.103 45.455 19.50 12.17 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.