Multiple sequence alignment - TraesCS5D01G176500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G176500 chr5D 100.000 3107 0 0 1 3107 276548184 276545078 0.000000e+00 5738.0
1 TraesCS5D01G176500 chr5D 84.348 575 49 17 1579 2127 276553536 276552977 2.740000e-145 525.0
2 TraesCS5D01G176500 chr5D 82.669 502 59 16 866 1353 276554192 276553705 1.330000e-113 420.0
3 TraesCS5D01G176500 chr5D 93.564 202 10 2 1452 1653 276553708 276553510 6.510000e-77 298.0
4 TraesCS5D01G176500 chr5B 94.937 1422 46 9 710 2124 313312103 313310701 0.000000e+00 2204.0
5 TraesCS5D01G176500 chr5B 85.854 615 54 18 1590 2174 313349945 313349334 9.460000e-175 623.0
6 TraesCS5D01G176500 chr5B 86.778 537 60 4 2572 3107 313310142 313309616 3.450000e-164 588.0
7 TraesCS5D01G176500 chr5B 84.134 479 57 13 884 1353 313350638 313350170 2.200000e-121 446.0
8 TraesCS5D01G176500 chr5B 76.923 585 84 24 1228 1807 313213038 313212500 5.070000e-73 285.0
9 TraesCS5D01G176500 chr5B 93.333 180 11 1 190 369 313343509 313343331 6.610000e-67 265.0
10 TraesCS5D01G176500 chr5B 94.083 169 8 1 549 715 313343328 313343160 3.980000e-64 255.0
11 TraesCS5D01G176500 chr5B 79.872 313 42 17 2265 2569 313310503 313310204 3.140000e-50 209.0
12 TraesCS5D01G176500 chr5B 100.000 28 0 0 2691 2718 454402424 454402451 6.000000e-03 52.8
13 TraesCS5D01G176500 chr5A 87.585 1627 92 42 542 2129 364971221 364969666 0.000000e+00 1784.0
14 TraesCS5D01G176500 chr5A 82.834 1002 133 26 2115 3107 364969649 364968678 0.000000e+00 861.0
15 TraesCS5D01G176500 chr5A 86.591 619 49 18 1579 2176 364978374 364977769 0.000000e+00 652.0
16 TraesCS5D01G176500 chr5A 77.693 659 83 32 1230 1872 364962123 364961513 8.250000e-91 344.0
17 TraesCS5D01G176500 chr5A 90.254 236 18 4 1122 1353 364978777 364978543 1.400000e-78 303.0
18 TraesCS5D01G176500 chr5A 89.744 234 23 1 866 1098 364979005 364978772 6.510000e-77 298.0
19 TraesCS5D01G176500 chr5A 92.118 203 13 2 1454 1656 364978544 364978345 1.820000e-72 283.0
20 TraesCS5D01G176500 chr5A 88.021 192 14 5 369 552 321903152 321903342 5.220000e-53 219.0
21 TraesCS5D01G176500 chr5A 87.805 164 14 5 190 352 364971381 364971223 1.470000e-43 187.0
22 TraesCS5D01G176500 chr7A 92.896 183 11 1 369 549 539543652 539543834 6.610000e-67 265.0
23 TraesCS5D01G176500 chr1A 92.818 181 11 1 369 547 542369954 542370134 8.550000e-66 261.0
24 TraesCS5D01G176500 chr3A 90.426 188 16 1 369 554 576272229 576272416 2.390000e-61 246.0
25 TraesCS5D01G176500 chr3A 87.363 182 18 3 369 546 593351789 593351609 1.460000e-48 204.0
26 TraesCS5D01G176500 chr2A 91.160 181 15 1 369 549 181847605 181847784 8.610000e-61 244.0
27 TraesCS5D01G176500 chr2A 87.222 180 20 3 372 548 218122425 218122246 5.250000e-48 202.0
28 TraesCS5D01G176500 chr2A 90.000 50 5 0 2521 2570 17005840 17005791 7.190000e-07 65.8
29 TraesCS5D01G176500 chr4A 89.785 186 15 3 369 552 628618625 628618808 5.180000e-58 235.0
30 TraesCS5D01G176500 chr4B 85.128 195 20 7 369 559 562352657 562352468 1.140000e-44 191.0
31 TraesCS5D01G176500 chr2D 80.833 120 16 6 2607 2722 340537946 340537830 1.530000e-13 87.9
32 TraesCS5D01G176500 chr4D 92.157 51 3 1 2521 2570 11004165 11004115 1.550000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G176500 chr5D 276545078 276548184 3106 True 5738.000000 5738 100.000000 1 3107 1 chr5D.!!$R1 3106
1 TraesCS5D01G176500 chr5D 276552977 276554192 1215 True 414.333333 525 86.860333 866 2127 3 chr5D.!!$R2 1261
2 TraesCS5D01G176500 chr5B 313309616 313312103 2487 True 1000.333333 2204 87.195667 710 3107 3 chr5B.!!$R2 2397
3 TraesCS5D01G176500 chr5B 313349334 313350638 1304 True 534.500000 623 84.994000 884 2174 2 chr5B.!!$R4 1290
4 TraesCS5D01G176500 chr5B 313212500 313213038 538 True 285.000000 285 76.923000 1228 1807 1 chr5B.!!$R1 579
5 TraesCS5D01G176500 chr5A 364968678 364971381 2703 True 944.000000 1784 86.074667 190 3107 3 chr5A.!!$R2 2917
6 TraesCS5D01G176500 chr5A 364977769 364979005 1236 True 384.000000 652 89.676750 866 2176 4 chr5A.!!$R3 1310
7 TraesCS5D01G176500 chr5A 364961513 364962123 610 True 344.000000 344 77.693000 1230 1872 1 chr5A.!!$R1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.253160 AATGTAGAGGCCAGGGGTGA 60.253 55.0 5.01 0.0 0.00 4.02 F
177 178 0.322906 CAGGGGTGAGCCTCCTTTTC 60.323 60.0 0.00 0.0 35.21 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2248 0.108138 ATACGGTGCTTCTCAGTGCC 60.108 55.0 0.0 0.0 0.00 5.01 R
2163 2446 1.284982 ATGCATCTCGCGCCGTATTC 61.285 55.0 0.0 0.0 46.97 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.523293 TTCTGTCTCTATCCTTCATGATCTC 57.477 40.000 0.00 0.00 0.00 2.75
25 26 6.851318 TCTGTCTCTATCCTTCATGATCTCT 58.149 40.000 0.00 0.00 0.00 3.10
26 27 6.716173 TCTGTCTCTATCCTTCATGATCTCTG 59.284 42.308 0.00 0.00 0.00 3.35
27 28 6.608922 TGTCTCTATCCTTCATGATCTCTGA 58.391 40.000 0.00 0.00 0.00 3.27
28 29 6.489700 TGTCTCTATCCTTCATGATCTCTGAC 59.510 42.308 0.00 0.00 0.00 3.51
29 30 6.716628 GTCTCTATCCTTCATGATCTCTGACT 59.283 42.308 0.00 0.00 0.00 3.41
30 31 7.882791 GTCTCTATCCTTCATGATCTCTGACTA 59.117 40.741 0.00 0.00 0.00 2.59
31 32 8.443979 TCTCTATCCTTCATGATCTCTGACTAA 58.556 37.037 0.00 0.00 0.00 2.24
32 33 9.076781 CTCTATCCTTCATGATCTCTGACTAAA 57.923 37.037 0.00 0.00 0.00 1.85
33 34 9.599056 TCTATCCTTCATGATCTCTGACTAAAT 57.401 33.333 0.00 0.00 0.00 1.40
36 37 8.728337 TCCTTCATGATCTCTGACTAAATTTG 57.272 34.615 0.00 0.00 0.00 2.32
37 38 8.542926 TCCTTCATGATCTCTGACTAAATTTGA 58.457 33.333 0.00 0.00 0.00 2.69
38 39 9.170734 CCTTCATGATCTCTGACTAAATTTGAA 57.829 33.333 0.00 0.00 0.00 2.69
40 41 9.730705 TTCATGATCTCTGACTAAATTTGAAGT 57.269 29.630 0.00 0.00 0.00 3.01
41 42 9.376075 TCATGATCTCTGACTAAATTTGAAGTC 57.624 33.333 12.37 12.37 42.04 3.01
42 43 9.381033 CATGATCTCTGACTAAATTTGAAGTCT 57.619 33.333 17.77 2.40 42.17 3.24
43 44 8.994429 TGATCTCTGACTAAATTTGAAGTCTC 57.006 34.615 17.77 9.90 42.17 3.36
44 45 8.588472 TGATCTCTGACTAAATTTGAAGTCTCA 58.412 33.333 17.77 11.72 42.17 3.27
45 46 9.086336 GATCTCTGACTAAATTTGAAGTCTCAG 57.914 37.037 17.77 13.87 42.17 3.35
46 47 7.957002 TCTCTGACTAAATTTGAAGTCTCAGT 58.043 34.615 17.77 4.60 42.17 3.41
47 48 8.424918 TCTCTGACTAAATTTGAAGTCTCAGTT 58.575 33.333 17.77 0.00 42.17 3.16
48 49 8.370493 TCTGACTAAATTTGAAGTCTCAGTTG 57.630 34.615 17.77 5.95 42.17 3.16
49 50 8.204160 TCTGACTAAATTTGAAGTCTCAGTTGA 58.796 33.333 17.77 7.49 42.17 3.18
50 51 8.908786 TGACTAAATTTGAAGTCTCAGTTGAT 57.091 30.769 17.77 0.00 42.17 2.57
51 52 9.996554 TGACTAAATTTGAAGTCTCAGTTGATA 57.003 29.630 17.77 0.00 42.17 2.15
53 54 9.442047 ACTAAATTTGAAGTCTCAGTTGATAGG 57.558 33.333 0.00 0.00 31.69 2.57
54 55 9.658799 CTAAATTTGAAGTCTCAGTTGATAGGA 57.341 33.333 0.00 0.00 31.69 2.94
56 57 8.729805 AATTTGAAGTCTCAGTTGATAGGATC 57.270 34.615 0.00 0.00 31.69 3.36
57 58 7.487822 TTTGAAGTCTCAGTTGATAGGATCT 57.512 36.000 0.00 0.00 31.69 2.75
58 59 7.487822 TTGAAGTCTCAGTTGATAGGATCTT 57.512 36.000 0.00 0.00 31.69 2.40
59 60 8.595362 TTGAAGTCTCAGTTGATAGGATCTTA 57.405 34.615 0.00 0.00 31.69 2.10
60 61 8.595362 TGAAGTCTCAGTTGATAGGATCTTAA 57.405 34.615 0.00 0.00 0.00 1.85
61 62 9.035890 TGAAGTCTCAGTTGATAGGATCTTAAA 57.964 33.333 0.00 0.00 0.00 1.52
62 63 9.308318 GAAGTCTCAGTTGATAGGATCTTAAAC 57.692 37.037 0.00 0.00 0.00 2.01
63 64 8.367660 AGTCTCAGTTGATAGGATCTTAAACA 57.632 34.615 0.00 0.00 0.00 2.83
64 65 8.986991 AGTCTCAGTTGATAGGATCTTAAACAT 58.013 33.333 0.00 0.00 0.00 2.71
80 81 9.743057 ATCTTAAACATAAGATCTCTTGACTCG 57.257 33.333 10.85 0.00 41.51 4.18
81 82 8.957466 TCTTAAACATAAGATCTCTTGACTCGA 58.043 33.333 10.85 0.00 37.40 4.04
82 83 9.574458 CTTAAACATAAGATCTCTTGACTCGAA 57.426 33.333 10.85 0.09 37.40 3.71
83 84 7.820044 AAACATAAGATCTCTTGACTCGAAC 57.180 36.000 10.85 0.00 37.40 3.95
84 85 6.516739 ACATAAGATCTCTTGACTCGAACA 57.483 37.500 10.85 0.00 37.40 3.18
85 86 6.326375 ACATAAGATCTCTTGACTCGAACAC 58.674 40.000 10.85 0.00 37.40 3.32
86 87 6.151985 ACATAAGATCTCTTGACTCGAACACT 59.848 38.462 10.85 0.00 37.40 3.55
87 88 7.337184 ACATAAGATCTCTTGACTCGAACACTA 59.663 37.037 10.85 0.00 37.40 2.74
88 89 6.767524 AAGATCTCTTGACTCGAACACTAT 57.232 37.500 0.00 0.00 34.38 2.12
89 90 7.867305 AAGATCTCTTGACTCGAACACTATA 57.133 36.000 0.00 0.00 34.38 1.31
90 91 7.254227 AGATCTCTTGACTCGAACACTATAC 57.746 40.000 0.00 0.00 0.00 1.47
91 92 7.051623 AGATCTCTTGACTCGAACACTATACT 58.948 38.462 0.00 0.00 0.00 2.12
92 93 6.424176 TCTCTTGACTCGAACACTATACTG 57.576 41.667 0.00 0.00 0.00 2.74
93 94 5.354513 TCTCTTGACTCGAACACTATACTGG 59.645 44.000 0.00 0.00 0.00 4.00
94 95 5.250982 TCTTGACTCGAACACTATACTGGA 58.749 41.667 0.00 0.00 0.00 3.86
95 96 5.886474 TCTTGACTCGAACACTATACTGGAT 59.114 40.000 0.00 0.00 0.00 3.41
96 97 6.377429 TCTTGACTCGAACACTATACTGGATT 59.623 38.462 0.00 0.00 0.00 3.01
97 98 6.132791 TGACTCGAACACTATACTGGATTC 57.867 41.667 0.00 0.00 0.00 2.52
98 99 5.650703 TGACTCGAACACTATACTGGATTCA 59.349 40.000 0.00 0.00 0.00 2.57
99 100 6.321435 TGACTCGAACACTATACTGGATTCAT 59.679 38.462 0.00 0.00 0.00 2.57
100 101 6.507900 ACTCGAACACTATACTGGATTCATG 58.492 40.000 0.00 0.00 0.00 3.07
101 102 5.289595 TCGAACACTATACTGGATTCATGC 58.710 41.667 0.00 0.00 0.00 4.06
102 103 5.069119 TCGAACACTATACTGGATTCATGCT 59.931 40.000 0.00 0.00 0.00 3.79
103 104 5.403766 CGAACACTATACTGGATTCATGCTC 59.596 44.000 0.00 0.00 0.00 4.26
104 105 5.220710 ACACTATACTGGATTCATGCTCC 57.779 43.478 7.09 7.09 0.00 4.70
105 106 4.655649 ACACTATACTGGATTCATGCTCCA 59.344 41.667 14.05 14.05 40.49 3.86
106 107 5.130975 ACACTATACTGGATTCATGCTCCAA 59.869 40.000 15.20 5.12 42.12 3.53
107 108 5.468072 CACTATACTGGATTCATGCTCCAAC 59.532 44.000 15.20 0.00 42.12 3.77
108 109 2.134789 ACTGGATTCATGCTCCAACC 57.865 50.000 15.20 2.48 42.12 3.77
109 110 1.355381 ACTGGATTCATGCTCCAACCA 59.645 47.619 15.20 6.16 42.12 3.67
110 111 2.022195 CTGGATTCATGCTCCAACCAG 58.978 52.381 15.20 10.78 42.12 4.00
111 112 1.355381 TGGATTCATGCTCCAACCAGT 59.645 47.619 12.82 0.00 39.83 4.00
112 113 2.225091 TGGATTCATGCTCCAACCAGTT 60.225 45.455 12.82 0.00 39.83 3.16
113 114 2.165030 GGATTCATGCTCCAACCAGTTG 59.835 50.000 3.47 3.47 40.13 3.16
114 115 2.363306 TTCATGCTCCAACCAGTTGT 57.637 45.000 9.53 0.00 38.85 3.32
115 116 2.363306 TCATGCTCCAACCAGTTGTT 57.637 45.000 9.53 0.00 38.85 2.83
116 117 2.665165 TCATGCTCCAACCAGTTGTTT 58.335 42.857 9.53 0.00 38.85 2.83
117 118 3.030291 TCATGCTCCAACCAGTTGTTTT 58.970 40.909 9.53 0.00 38.85 2.43
118 119 3.450457 TCATGCTCCAACCAGTTGTTTTT 59.550 39.130 9.53 0.00 38.85 1.94
119 120 4.646945 TCATGCTCCAACCAGTTGTTTTTA 59.353 37.500 9.53 0.00 38.85 1.52
120 121 5.304101 TCATGCTCCAACCAGTTGTTTTTAT 59.696 36.000 9.53 0.00 38.85 1.40
121 122 5.606348 TGCTCCAACCAGTTGTTTTTATT 57.394 34.783 9.53 0.00 38.85 1.40
122 123 5.596845 TGCTCCAACCAGTTGTTTTTATTC 58.403 37.500 9.53 0.00 38.85 1.75
123 124 5.127845 TGCTCCAACCAGTTGTTTTTATTCA 59.872 36.000 9.53 0.00 38.85 2.57
124 125 6.183360 TGCTCCAACCAGTTGTTTTTATTCAT 60.183 34.615 9.53 0.00 38.85 2.57
125 126 7.014711 TGCTCCAACCAGTTGTTTTTATTCATA 59.985 33.333 9.53 0.00 38.85 2.15
126 127 7.328493 GCTCCAACCAGTTGTTTTTATTCATAC 59.672 37.037 9.53 0.00 38.85 2.39
127 128 8.472007 TCCAACCAGTTGTTTTTATTCATACT 57.528 30.769 9.53 0.00 38.85 2.12
128 129 9.575868 TCCAACCAGTTGTTTTTATTCATACTA 57.424 29.630 9.53 0.00 38.85 1.82
156 157 7.672983 AATAATATGACCGCAAATGTAGAGG 57.327 36.000 0.00 0.00 0.00 3.69
157 158 1.668419 ATGACCGCAAATGTAGAGGC 58.332 50.000 0.00 0.00 0.00 4.70
158 159 0.392461 TGACCGCAAATGTAGAGGCC 60.392 55.000 0.00 0.00 0.00 5.19
159 160 0.392461 GACCGCAAATGTAGAGGCCA 60.392 55.000 5.01 0.00 0.00 5.36
160 161 0.392998 ACCGCAAATGTAGAGGCCAG 60.393 55.000 5.01 0.00 0.00 4.85
161 162 1.097547 CCGCAAATGTAGAGGCCAGG 61.098 60.000 5.01 0.00 0.00 4.45
162 163 1.097547 CGCAAATGTAGAGGCCAGGG 61.098 60.000 5.01 0.00 0.00 4.45
163 164 0.753111 GCAAATGTAGAGGCCAGGGG 60.753 60.000 5.01 0.00 0.00 4.79
164 165 0.625849 CAAATGTAGAGGCCAGGGGT 59.374 55.000 5.01 0.00 0.00 4.95
165 166 0.625849 AAATGTAGAGGCCAGGGGTG 59.374 55.000 5.01 0.00 0.00 4.61
166 167 0.253160 AATGTAGAGGCCAGGGGTGA 60.253 55.000 5.01 0.00 0.00 4.02
167 168 0.692419 ATGTAGAGGCCAGGGGTGAG 60.692 60.000 5.01 0.00 0.00 3.51
168 169 2.365635 TAGAGGCCAGGGGTGAGC 60.366 66.667 5.01 0.00 0.00 4.26
174 175 2.612115 CCAGGGGTGAGCCTCCTT 60.612 66.667 0.00 0.00 35.21 3.36
175 176 2.234296 CCAGGGGTGAGCCTCCTTT 61.234 63.158 0.00 0.00 35.21 3.11
176 177 1.770324 CAGGGGTGAGCCTCCTTTT 59.230 57.895 0.00 0.00 35.21 2.27
177 178 0.322906 CAGGGGTGAGCCTCCTTTTC 60.323 60.000 0.00 0.00 35.21 2.29
178 179 1.000771 GGGGTGAGCCTCCTTTTCC 60.001 63.158 0.00 0.00 34.45 3.13
179 180 1.767692 GGGTGAGCCTCCTTTTCCA 59.232 57.895 0.00 0.00 34.45 3.53
180 181 0.332972 GGGTGAGCCTCCTTTTCCAT 59.667 55.000 0.00 0.00 34.45 3.41
181 182 1.272704 GGGTGAGCCTCCTTTTCCATT 60.273 52.381 0.00 0.00 34.45 3.16
182 183 2.529632 GGTGAGCCTCCTTTTCCATTT 58.470 47.619 0.00 0.00 0.00 2.32
183 184 2.899900 GGTGAGCCTCCTTTTCCATTTT 59.100 45.455 0.00 0.00 0.00 1.82
184 185 3.324846 GGTGAGCCTCCTTTTCCATTTTT 59.675 43.478 0.00 0.00 0.00 1.94
207 208 4.911514 TTTTGCTCCAACCAGTTACTTC 57.088 40.909 0.00 0.00 0.00 3.01
218 219 6.460399 CCAACCAGTTACTTCAAAATTCGGAA 60.460 38.462 0.00 0.00 0.00 4.30
219 220 6.894339 ACCAGTTACTTCAAAATTCGGAAT 57.106 33.333 0.00 0.00 0.00 3.01
221 222 7.145323 ACCAGTTACTTCAAAATTCGGAATTG 58.855 34.615 16.16 7.18 0.00 2.32
261 262 8.853077 ACAATACATTTTGACAATCTCTCTCA 57.147 30.769 0.00 0.00 0.00 3.27
290 291 5.819059 AGGCTTATTTAGACTTAGACGTCG 58.181 41.667 10.46 0.00 40.22 5.12
294 295 7.308229 GGCTTATTTAGACTTAGACGTCGGATA 60.308 40.741 10.46 0.00 38.90 2.59
311 312 7.917505 ACGTCGGATAGATTTAAAGTCGTATTT 59.082 33.333 0.00 0.00 0.00 1.40
329 330 7.629845 GTCGTATTTTTCTAATACTGCGTTGAC 59.370 37.037 0.00 0.00 32.43 3.18
331 332 7.953173 CGTATTTTTCTAATACTGCGTTGACAA 59.047 33.333 0.00 0.00 32.43 3.18
348 349 6.495706 GTTGACAAGGTCTTTAAACTTGAGG 58.504 40.000 18.69 0.00 43.13 3.86
352 353 4.022413 AGGTCTTTAAACTTGAGGCCTC 57.978 45.455 26.78 26.78 41.51 4.70
353 354 3.653352 AGGTCTTTAAACTTGAGGCCTCT 59.347 43.478 32.28 15.23 41.51 3.69
354 355 4.104897 AGGTCTTTAAACTTGAGGCCTCTT 59.895 41.667 32.28 20.50 41.51 2.85
355 356 4.216472 GGTCTTTAAACTTGAGGCCTCTTG 59.784 45.833 32.28 25.03 32.45 3.02
356 357 5.063880 GTCTTTAAACTTGAGGCCTCTTGA 58.936 41.667 32.28 17.41 0.00 3.02
357 358 5.049336 GTCTTTAAACTTGAGGCCTCTTGAC 60.049 44.000 32.28 17.05 0.00 3.18
358 359 4.706842 TTAAACTTGAGGCCTCTTGACT 57.293 40.909 32.28 16.67 0.00 3.41
359 360 5.818678 TTAAACTTGAGGCCTCTTGACTA 57.181 39.130 32.28 15.70 0.00 2.59
360 361 4.917906 AAACTTGAGGCCTCTTGACTAT 57.082 40.909 32.28 10.79 0.00 2.12
361 362 3.902881 ACTTGAGGCCTCTTGACTATG 57.097 47.619 32.28 15.59 0.00 2.23
362 363 3.445008 ACTTGAGGCCTCTTGACTATGA 58.555 45.455 32.28 6.94 0.00 2.15
363 364 4.036518 ACTTGAGGCCTCTTGACTATGAT 58.963 43.478 32.28 5.68 0.00 2.45
364 365 5.211973 ACTTGAGGCCTCTTGACTATGATA 58.788 41.667 32.28 5.57 0.00 2.15
365 366 5.069781 ACTTGAGGCCTCTTGACTATGATAC 59.930 44.000 32.28 2.67 0.00 2.24
366 367 4.809193 TGAGGCCTCTTGACTATGATACT 58.191 43.478 32.28 0.00 0.00 2.12
367 368 5.953571 TGAGGCCTCTTGACTATGATACTA 58.046 41.667 32.28 4.17 0.00 1.82
368 369 6.556639 TGAGGCCTCTTGACTATGATACTAT 58.443 40.000 32.28 0.00 0.00 2.12
369 370 6.435591 TGAGGCCTCTTGACTATGATACTATG 59.564 42.308 32.28 0.00 0.00 2.23
370 371 6.318913 AGGCCTCTTGACTATGATACTATGT 58.681 40.000 0.00 0.00 0.00 2.29
371 372 6.435904 AGGCCTCTTGACTATGATACTATGTC 59.564 42.308 0.00 0.00 0.00 3.06
372 373 6.435904 GGCCTCTTGACTATGATACTATGTCT 59.564 42.308 0.00 0.00 0.00 3.41
373 374 7.612244 GGCCTCTTGACTATGATACTATGTCTA 59.388 40.741 0.00 0.00 0.00 2.59
374 375 9.184523 GCCTCTTGACTATGATACTATGTCTAT 57.815 37.037 0.00 0.00 0.00 1.98
377 378 8.961634 TCTTGACTATGATACTATGTCTATGGC 58.038 37.037 0.00 0.00 0.00 4.40
378 379 8.650143 TTGACTATGATACTATGTCTATGGCA 57.350 34.615 0.00 0.00 0.00 4.92
379 380 8.056407 TGACTATGATACTATGTCTATGGCAC 57.944 38.462 0.00 0.00 0.00 5.01
402 403 7.807977 ACATCTAAATGTGCCCTAGTTATTG 57.192 36.000 0.00 0.00 44.51 1.90
403 404 6.263168 ACATCTAAATGTGCCCTAGTTATTGC 59.737 38.462 0.00 0.00 44.51 3.56
404 405 5.750524 TCTAAATGTGCCCTAGTTATTGCA 58.249 37.500 0.00 0.00 0.00 4.08
405 406 6.364701 TCTAAATGTGCCCTAGTTATTGCAT 58.635 36.000 0.00 0.00 35.96 3.96
406 407 7.513856 TCTAAATGTGCCCTAGTTATTGCATA 58.486 34.615 0.00 0.00 35.96 3.14
407 408 8.163408 TCTAAATGTGCCCTAGTTATTGCATAT 58.837 33.333 0.00 0.00 37.18 1.78
408 409 7.601705 AAATGTGCCCTAGTTATTGCATATT 57.398 32.000 0.00 0.00 44.11 1.28
409 410 7.601705 AATGTGCCCTAGTTATTGCATATTT 57.398 32.000 0.00 0.00 40.97 1.40
410 411 8.704849 AATGTGCCCTAGTTATTGCATATTTA 57.295 30.769 0.00 0.00 40.97 1.40
411 412 8.704849 ATGTGCCCTAGTTATTGCATATTTAA 57.295 30.769 0.00 0.00 32.59 1.52
412 413 8.165239 TGTGCCCTAGTTATTGCATATTTAAG 57.835 34.615 0.00 0.00 35.96 1.85
413 414 7.777910 TGTGCCCTAGTTATTGCATATTTAAGT 59.222 33.333 0.00 0.00 35.96 2.24
414 415 8.076178 GTGCCCTAGTTATTGCATATTTAAGTG 58.924 37.037 0.00 0.00 35.96 3.16
415 416 7.230510 TGCCCTAGTTATTGCATATTTAAGTGG 59.769 37.037 0.00 0.00 0.00 4.00
416 417 7.593825 CCCTAGTTATTGCATATTTAAGTGGC 58.406 38.462 0.00 0.00 0.00 5.01
417 418 7.448469 CCCTAGTTATTGCATATTTAAGTGGCT 59.552 37.037 0.00 0.00 0.00 4.75
418 419 8.507249 CCTAGTTATTGCATATTTAAGTGGCTC 58.493 37.037 0.00 0.00 0.00 4.70
419 420 7.880160 AGTTATTGCATATTTAAGTGGCTCA 57.120 32.000 0.00 0.00 0.00 4.26
420 421 8.292444 AGTTATTGCATATTTAAGTGGCTCAA 57.708 30.769 0.00 0.00 0.00 3.02
421 422 8.917088 AGTTATTGCATATTTAAGTGGCTCAAT 58.083 29.630 0.00 0.00 0.00 2.57
422 423 9.185192 GTTATTGCATATTTAAGTGGCTCAATC 57.815 33.333 0.00 0.00 0.00 2.67
423 424 6.772360 TTGCATATTTAAGTGGCTCAATCA 57.228 33.333 0.00 0.00 0.00 2.57
424 425 6.772360 TGCATATTTAAGTGGCTCAATCAA 57.228 33.333 0.00 0.00 0.00 2.57
425 426 7.167924 TGCATATTTAAGTGGCTCAATCAAA 57.832 32.000 0.00 0.00 0.00 2.69
426 427 7.035004 TGCATATTTAAGTGGCTCAATCAAAC 58.965 34.615 0.00 0.00 0.00 2.93
427 428 7.093814 TGCATATTTAAGTGGCTCAATCAAACT 60.094 33.333 0.00 0.00 0.00 2.66
428 429 8.405531 GCATATTTAAGTGGCTCAATCAAACTA 58.594 33.333 0.00 0.00 0.00 2.24
429 430 9.941664 CATATTTAAGTGGCTCAATCAAACTAG 57.058 33.333 0.00 0.00 0.00 2.57
430 431 9.905713 ATATTTAAGTGGCTCAATCAAACTAGA 57.094 29.630 0.00 0.00 0.00 2.43
431 432 8.635765 ATTTAAGTGGCTCAATCAAACTAGAA 57.364 30.769 0.00 0.00 0.00 2.10
432 433 8.458573 TTTAAGTGGCTCAATCAAACTAGAAA 57.541 30.769 0.00 0.00 0.00 2.52
433 434 6.566197 AAGTGGCTCAATCAAACTAGAAAG 57.434 37.500 0.00 0.00 0.00 2.62
434 435 5.006386 AGTGGCTCAATCAAACTAGAAAGG 58.994 41.667 0.00 0.00 0.00 3.11
435 436 5.003804 GTGGCTCAATCAAACTAGAAAGGA 58.996 41.667 0.00 0.00 0.00 3.36
436 437 5.473504 GTGGCTCAATCAAACTAGAAAGGAA 59.526 40.000 0.00 0.00 0.00 3.36
437 438 6.016276 GTGGCTCAATCAAACTAGAAAGGAAA 60.016 38.462 0.00 0.00 0.00 3.13
438 439 6.549364 TGGCTCAATCAAACTAGAAAGGAAAA 59.451 34.615 0.00 0.00 0.00 2.29
439 440 7.069331 TGGCTCAATCAAACTAGAAAGGAAAAA 59.931 33.333 0.00 0.00 0.00 1.94
462 463 7.776933 AAAAGAGAGGAAAGAAAATGTTTGC 57.223 32.000 0.00 0.00 0.00 3.68
463 464 6.469782 AAGAGAGGAAAGAAAATGTTTGCA 57.530 33.333 0.00 0.00 0.00 4.08
464 465 5.836347 AGAGAGGAAAGAAAATGTTTGCAC 58.164 37.500 0.00 0.00 0.00 4.57
465 466 5.360714 AGAGAGGAAAGAAAATGTTTGCACA 59.639 36.000 0.00 0.00 37.31 4.57
466 467 5.976458 AGAGGAAAGAAAATGTTTGCACAA 58.024 33.333 0.00 0.00 36.16 3.33
467 468 6.405538 AGAGGAAAGAAAATGTTTGCACAAA 58.594 32.000 0.00 0.00 36.16 2.83
468 469 7.049754 AGAGGAAAGAAAATGTTTGCACAAAT 58.950 30.769 0.00 0.00 36.16 2.32
469 470 7.225341 AGAGGAAAGAAAATGTTTGCACAAATC 59.775 33.333 0.00 0.00 36.16 2.17
470 471 7.049754 AGGAAAGAAAATGTTTGCACAAATCT 58.950 30.769 0.00 0.00 36.16 2.40
471 472 7.225341 AGGAAAGAAAATGTTTGCACAAATCTC 59.775 33.333 0.00 0.00 36.16 2.75
472 473 7.225341 GGAAAGAAAATGTTTGCACAAATCTCT 59.775 33.333 0.00 0.00 36.16 3.10
473 474 7.473027 AAGAAAATGTTTGCACAAATCTCTG 57.527 32.000 0.00 0.00 36.16 3.35
474 475 6.576185 AGAAAATGTTTGCACAAATCTCTGT 58.424 32.000 0.00 0.00 36.16 3.41
476 477 4.924305 ATGTTTGCACAAATCTCTGTGT 57.076 36.364 5.69 0.00 46.93 3.72
477 478 6.389830 AATGTTTGCACAAATCTCTGTGTA 57.610 33.333 5.69 0.00 46.93 2.90
478 479 5.826601 TGTTTGCACAAATCTCTGTGTAA 57.173 34.783 3.57 3.57 46.09 2.41
483 484 6.631971 TGCACAAATCTCTGTGTAAAATCA 57.368 33.333 5.69 0.00 46.93 2.57
484 485 7.036996 TGCACAAATCTCTGTGTAAAATCAA 57.963 32.000 5.69 0.00 46.93 2.57
485 486 7.140705 TGCACAAATCTCTGTGTAAAATCAAG 58.859 34.615 5.69 0.00 46.93 3.02
486 487 6.583806 GCACAAATCTCTGTGTAAAATCAAGG 59.416 38.462 5.69 0.00 46.93 3.61
487 488 7.522073 GCACAAATCTCTGTGTAAAATCAAGGA 60.522 37.037 5.69 0.00 46.93 3.36
488 489 8.517878 CACAAATCTCTGTGTAAAATCAAGGAT 58.482 33.333 0.00 0.00 41.52 3.24
489 490 9.739276 ACAAATCTCTGTGTAAAATCAAGGATA 57.261 29.630 0.00 0.00 0.00 2.59
493 494 9.775854 ATCTCTGTGTAAAATCAAGGATATGAG 57.224 33.333 0.00 0.00 31.76 2.90
494 495 8.981659 TCTCTGTGTAAAATCAAGGATATGAGA 58.018 33.333 0.00 0.00 31.76 3.27
495 496 8.948631 TCTGTGTAAAATCAAGGATATGAGAC 57.051 34.615 0.00 0.00 31.76 3.36
496 497 8.762645 TCTGTGTAAAATCAAGGATATGAGACT 58.237 33.333 0.00 0.00 31.76 3.24
497 498 9.388506 CTGTGTAAAATCAAGGATATGAGACTT 57.611 33.333 0.00 0.00 31.76 3.01
504 505 9.775854 AAATCAAGGATATGAGACTTAGATGTG 57.224 33.333 0.00 0.00 31.76 3.21
505 506 6.753180 TCAAGGATATGAGACTTAGATGTGC 58.247 40.000 0.00 0.00 0.00 4.57
506 507 6.324770 TCAAGGATATGAGACTTAGATGTGCA 59.675 38.462 0.00 0.00 0.00 4.57
507 508 6.737720 AGGATATGAGACTTAGATGTGCAA 57.262 37.500 0.00 0.00 0.00 4.08
508 509 7.313740 AGGATATGAGACTTAGATGTGCAAT 57.686 36.000 0.00 0.00 0.00 3.56
509 510 8.427902 AGGATATGAGACTTAGATGTGCAATA 57.572 34.615 0.00 0.00 0.00 1.90
510 511 8.310382 AGGATATGAGACTTAGATGTGCAATAC 58.690 37.037 0.00 0.00 0.00 1.89
511 512 8.310382 GGATATGAGACTTAGATGTGCAATACT 58.690 37.037 0.00 0.00 0.00 2.12
512 513 9.703892 GATATGAGACTTAGATGTGCAATACTT 57.296 33.333 0.00 0.00 0.00 2.24
515 516 7.492524 TGAGACTTAGATGTGCAATACTTAGG 58.507 38.462 0.00 0.00 0.00 2.69
516 517 7.342026 TGAGACTTAGATGTGCAATACTTAGGA 59.658 37.037 0.00 0.00 0.00 2.94
517 518 7.493367 AGACTTAGATGTGCAATACTTAGGAC 58.507 38.462 0.00 0.00 0.00 3.85
518 519 7.124298 AGACTTAGATGTGCAATACTTAGGACA 59.876 37.037 0.00 0.00 40.35 4.02
519 520 7.042335 ACTTAGATGTGCAATACTTAGGACAC 58.958 38.462 0.00 0.00 38.90 3.67
520 521 5.420725 AGATGTGCAATACTTAGGACACA 57.579 39.130 0.00 0.00 38.90 3.72
523 524 5.420725 TGTGCAATACTTAGGACACATCT 57.579 39.130 0.00 0.00 33.41 2.90
524 525 6.538945 TGTGCAATACTTAGGACACATCTA 57.461 37.500 0.00 0.00 33.41 1.98
525 526 6.573434 TGTGCAATACTTAGGACACATCTAG 58.427 40.000 0.00 0.00 33.41 2.43
526 527 6.379988 TGTGCAATACTTAGGACACATCTAGA 59.620 38.462 0.00 0.00 33.41 2.43
527 528 7.069950 TGTGCAATACTTAGGACACATCTAGAT 59.930 37.037 0.00 0.00 33.41 1.98
528 529 7.383572 GTGCAATACTTAGGACACATCTAGATG 59.616 40.741 27.63 27.63 44.15 2.90
564 565 8.693542 AAACTGTATTAAATTCATGCTTCAGC 57.306 30.769 0.00 0.00 42.50 4.26
565 566 6.799512 ACTGTATTAAATTCATGCTTCAGCC 58.200 36.000 0.00 0.00 41.18 4.85
569 570 3.323751 AAATTCATGCTTCAGCCAACC 57.676 42.857 0.00 0.00 41.18 3.77
580 581 4.644498 CTTCAGCCAACCCATTCAAAAAT 58.356 39.130 0.00 0.00 0.00 1.82
588 589 5.757808 CCAACCCATTCAAAAATCGAAACTT 59.242 36.000 0.00 0.00 0.00 2.66
629 630 7.222224 ACGATATATTTCAACACCTCTTTCGAC 59.778 37.037 0.00 0.00 0.00 4.20
645 646 3.004024 TCGACGAGGTTAACTGTCAAC 57.996 47.619 19.00 0.00 31.64 3.18
666 667 2.800096 CACGAAAATGTGCCAGCAC 58.200 52.632 15.80 15.80 46.33 4.40
684 685 4.331168 CAGCACAGGAGATTAGCAAGTTAC 59.669 45.833 0.00 0.00 0.00 2.50
699 700 4.335594 GCAAGTTACCTTTGTGTCTGTCTT 59.664 41.667 0.00 0.00 0.00 3.01
975 997 1.901650 GACCCTTCGTTGCTGCTTCG 61.902 60.000 0.00 5.97 0.00 3.79
981 1003 2.939022 GTTGCTGCTTCGCTCGTT 59.061 55.556 0.00 0.00 0.00 3.85
1037 1064 3.118956 ACGTCTTCTTGCTCATAAGAGGG 60.119 47.826 14.22 6.28 42.33 4.30
1208 1251 5.240844 GGTATGTTACCTGCTTGTCTTGTTT 59.759 40.000 0.00 0.00 45.52 2.83
1210 1253 3.311322 TGTTACCTGCTTGTCTTGTTTCG 59.689 43.478 0.00 0.00 0.00 3.46
1406 1474 3.830744 AATCCATAATCCGTCGTTCCA 57.169 42.857 0.00 0.00 0.00 3.53
1442 1517 3.600388 CTTACGAGGAGGTGCTCAATTT 58.400 45.455 0.00 0.00 31.08 1.82
1504 1579 0.673985 GATCATCATCGTCGGGGACA 59.326 55.000 0.00 0.00 32.09 4.02
1506 1581 0.683179 TCATCATCGTCGGGGACAGT 60.683 55.000 0.00 0.00 32.09 3.55
1603 1678 1.625818 ACGACAAGAAGAAGGATGGCT 59.374 47.619 0.00 0.00 0.00 4.75
1604 1679 2.832129 ACGACAAGAAGAAGGATGGCTA 59.168 45.455 0.00 0.00 0.00 3.93
1605 1680 3.190874 CGACAAGAAGAAGGATGGCTAC 58.809 50.000 0.00 0.00 0.00 3.58
1606 1681 3.190874 GACAAGAAGAAGGATGGCTACG 58.809 50.000 0.00 0.00 0.00 3.51
1607 1682 2.093447 ACAAGAAGAAGGATGGCTACGG 60.093 50.000 0.00 0.00 0.00 4.02
1608 1683 0.466124 AGAAGAAGGATGGCTACGGC 59.534 55.000 0.00 0.00 37.82 5.68
1609 1684 0.876342 GAAGAAGGATGGCTACGGCG 60.876 60.000 4.80 4.80 39.81 6.46
1610 1685 2.925162 AAGAAGGATGGCTACGGCGC 62.925 60.000 6.90 0.00 39.81 6.53
1697 1892 2.034066 CTTTGGCGGCAAGGAGGA 59.966 61.111 26.79 10.33 0.00 3.71
1767 1974 4.580551 CCGATCACGTACCCCGCC 62.581 72.222 0.00 0.00 41.42 6.13
1817 2024 1.620524 CCCGGTTTACTCCTCCTACCA 60.621 57.143 0.00 0.00 0.00 3.25
1852 2059 5.674525 CTTATCAGCACCAAGAACAGGATA 58.325 41.667 0.00 0.00 0.00 2.59
1878 2102 3.750130 GCTGCAGCATTATGTAGTAGCAT 59.250 43.478 33.36 0.00 41.59 3.79
1879 2103 4.931601 GCTGCAGCATTATGTAGTAGCATA 59.068 41.667 33.36 0.00 41.59 3.14
1880 2104 5.063186 GCTGCAGCATTATGTAGTAGCATAG 59.937 44.000 33.36 0.00 41.59 2.23
1881 2105 6.101650 TGCAGCATTATGTAGTAGCATAGT 57.898 37.500 0.00 0.00 33.48 2.12
1882 2106 7.227049 TGCAGCATTATGTAGTAGCATAGTA 57.773 36.000 0.00 0.00 33.48 1.82
1883 2107 7.090808 TGCAGCATTATGTAGTAGCATAGTAC 58.909 38.462 0.00 0.00 45.54 2.73
1884 2108 7.039714 TGCAGCATTATGTAGTAGCATAGTACT 60.040 37.037 0.00 0.00 45.54 2.73
1885 2109 8.459635 GCAGCATTATGTAGTAGCATAGTACTA 58.540 37.037 4.77 4.77 45.54 1.82
1917 2141 7.560368 AGTTGTTAGTTAAGGAGAGATGATGG 58.440 38.462 0.00 0.00 0.00 3.51
1920 2144 3.663198 AGTTAAGGAGAGATGATGGGCT 58.337 45.455 0.00 0.00 0.00 5.19
2017 2248 3.818787 GCGATGTTGGCTGCCTGG 61.819 66.667 21.03 1.52 0.00 4.45
2029 2260 2.749441 GCCTGGGCACTGAGAAGC 60.749 66.667 6.75 0.00 41.49 3.86
2133 2416 3.096092 AGGAAACTCAGGTGTTTGCAAA 58.904 40.909 8.05 8.05 46.12 3.68
2135 2418 4.162131 AGGAAACTCAGGTGTTTGCAAAAT 59.838 37.500 14.67 0.00 46.12 1.82
2164 2447 5.295431 CACAAGATGCAAAATTACTCCGA 57.705 39.130 0.00 0.00 0.00 4.55
2188 2471 0.863119 GGCGCGAGATGCATCAAAAC 60.863 55.000 27.81 14.51 46.97 2.43
2189 2472 0.179192 GCGCGAGATGCATCAAAACA 60.179 50.000 27.81 0.00 46.97 2.83
2190 2473 1.532505 GCGCGAGATGCATCAAAACAT 60.533 47.619 27.81 6.52 46.97 2.71
2191 2474 2.106418 CGCGAGATGCATCAAAACATG 58.894 47.619 27.81 10.23 46.97 3.21
2192 2475 2.223089 CGCGAGATGCATCAAAACATGA 60.223 45.455 27.81 0.00 46.97 3.07
2193 2476 3.103738 GCGAGATGCATCAAAACATGAC 58.896 45.455 27.81 7.02 45.45 3.06
2194 2477 3.426560 GCGAGATGCATCAAAACATGACA 60.427 43.478 27.81 0.00 45.45 3.58
2197 2480 2.728690 TGCATCAAAACATGACAGGC 57.271 45.000 0.00 0.00 41.93 4.85
2198 2481 2.241160 TGCATCAAAACATGACAGGCT 58.759 42.857 0.00 0.00 41.93 4.58
2200 2483 3.825585 TGCATCAAAACATGACAGGCTTA 59.174 39.130 0.00 0.00 41.93 3.09
2207 2492 5.567138 AAACATGACAGGCTTATAACTGC 57.433 39.130 0.00 0.00 38.25 4.40
2240 2525 4.016444 CTCCAACAGCAGCCCTATTTTTA 58.984 43.478 0.00 0.00 0.00 1.52
2257 2542 2.430546 TTAGGCGTCGGTCGTTTTTA 57.569 45.000 0.00 0.00 42.13 1.52
2258 2543 1.981254 TAGGCGTCGGTCGTTTTTAG 58.019 50.000 0.00 0.00 42.13 1.85
2268 2582 3.302610 CGGTCGTTTTTAGAGCACGAAAA 60.303 43.478 0.00 0.00 44.10 2.29
2272 2586 4.567558 TCGTTTTTAGAGCACGAAAAGTCA 59.432 37.500 2.85 0.00 39.88 3.41
2294 2608 2.755952 AAAAGGCCTCCAACAACTCT 57.244 45.000 5.23 0.00 0.00 3.24
2296 2610 0.402121 AAGGCCTCCAACAACTCTCC 59.598 55.000 5.23 0.00 0.00 3.71
2366 2681 4.090057 GCTCCTCGTGCGGCAAAC 62.090 66.667 3.23 0.00 0.00 2.93
2369 2684 1.507141 CTCCTCGTGCGGCAAACTTT 61.507 55.000 3.23 0.00 0.00 2.66
2370 2685 1.098712 TCCTCGTGCGGCAAACTTTT 61.099 50.000 3.23 0.00 0.00 2.27
2381 2696 1.470805 GCAAACTTTTGGCACTTCGGT 60.471 47.619 3.95 0.00 38.57 4.69
2387 2702 0.179004 TTTGGCACTTCGGTGGATGT 60.179 50.000 0.00 0.00 45.39 3.06
2408 2723 1.538950 CCAAAGAAGTGAGGCTGCTTC 59.461 52.381 16.30 16.30 42.22 3.86
2409 2724 1.196354 CAAAGAAGTGAGGCTGCTTCG 59.804 52.381 17.37 5.57 42.22 3.79
2429 2744 0.457853 GGACGCTTGTATGCAGTCGA 60.458 55.000 12.14 0.00 37.36 4.20
2439 2754 0.673644 ATGCAGTCGAAAACCCTCGG 60.674 55.000 0.00 0.00 39.35 4.63
2482 2797 1.455217 GCATCATGGCTGGCTCCTT 60.455 57.895 2.00 0.00 0.00 3.36
2505 2820 4.580551 CCGCCACCGACCCGATAC 62.581 72.222 0.00 0.00 36.29 2.24
2559 2875 3.695830 CTGTTGGAGCAGTTTACCCTA 57.304 47.619 0.00 0.00 0.00 3.53
2560 2876 4.222124 CTGTTGGAGCAGTTTACCCTAT 57.778 45.455 0.00 0.00 0.00 2.57
2569 2938 2.681344 CAGTTTACCCTATTTCGTGCCC 59.319 50.000 0.00 0.00 0.00 5.36
2575 2944 3.169908 ACCCTATTTCGTGCCCAAAAAT 58.830 40.909 0.00 0.00 0.00 1.82
2576 2945 4.345854 ACCCTATTTCGTGCCCAAAAATA 58.654 39.130 0.00 0.00 0.00 1.40
2577 2946 4.773149 ACCCTATTTCGTGCCCAAAAATAA 59.227 37.500 0.00 0.00 0.00 1.40
2578 2947 5.423931 ACCCTATTTCGTGCCCAAAAATAAT 59.576 36.000 0.00 0.00 0.00 1.28
2579 2948 5.983118 CCCTATTTCGTGCCCAAAAATAATC 59.017 40.000 0.00 0.00 0.00 1.75
2596 2970 7.826260 AAATAATCGTTTTTGTGCCCTATTG 57.174 32.000 0.00 0.00 0.00 1.90
2599 2973 5.968528 ATCGTTTTTGTGCCCTATTGTAA 57.031 34.783 0.00 0.00 0.00 2.41
2611 2985 4.079253 CCCTATTGTAAGGCTGTTGTTGT 58.921 43.478 0.00 0.00 35.09 3.32
2613 2987 5.123344 CCCTATTGTAAGGCTGTTGTTGTAC 59.877 44.000 0.00 0.00 35.09 2.90
2654 3029 2.448926 AAAAAGCGTTTATGTGCCCC 57.551 45.000 0.00 0.00 0.00 5.80
2659 3034 1.204467 AGCGTTTATGTGCCCCAAATG 59.796 47.619 0.00 0.00 0.00 2.32
2667 3042 4.535526 ATGTGCCCCAAATGTTTTACTC 57.464 40.909 0.00 0.00 0.00 2.59
2742 3117 2.969262 TCCCTTTTCCCACCATCAAAAC 59.031 45.455 0.00 0.00 0.00 2.43
2746 3121 2.765689 TTCCCACCATCAAAACCACT 57.234 45.000 0.00 0.00 0.00 4.00
2748 3123 3.433306 TCCCACCATCAAAACCACTAG 57.567 47.619 0.00 0.00 0.00 2.57
2750 3125 3.396276 TCCCACCATCAAAACCACTAGAA 59.604 43.478 0.00 0.00 0.00 2.10
2755 3130 6.646240 CCACCATCAAAACCACTAGAAAATTG 59.354 38.462 0.00 0.00 0.00 2.32
2883 3260 7.546358 TGCAGAGAAAAGTTTCTTGATTTCAA 58.454 30.769 7.69 0.00 46.84 2.69
2987 3364 6.151817 GGAGGCTTCAGAATTATGTCAAAAGT 59.848 38.462 0.00 0.00 0.00 2.66
3000 3377 2.612212 GTCAAAAGTTCTCTCAACGCCA 59.388 45.455 0.00 0.00 0.00 5.69
3011 3388 2.223144 TCTCAACGCCATTCAAAGTTCG 59.777 45.455 0.00 0.00 0.00 3.95
3089 3466 6.764560 TGGGACTCAGTAAAGTTTCAGTTTAC 59.235 38.462 6.22 6.22 41.81 2.01
3096 3473 9.834628 TCAGTAAAGTTTCAGTTTACAACTTTG 57.165 29.630 16.02 4.42 45.79 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.231115 CAGAGATCATGAAGGATAGAGACAGAA 59.769 40.741 0.00 0.00 0.00 3.02
1 2 6.716173 CAGAGATCATGAAGGATAGAGACAGA 59.284 42.308 0.00 0.00 0.00 3.41
2 3 6.716173 TCAGAGATCATGAAGGATAGAGACAG 59.284 42.308 0.00 0.00 0.00 3.51
3 4 6.489700 GTCAGAGATCATGAAGGATAGAGACA 59.510 42.308 0.00 0.00 0.00 3.41
4 5 6.716628 AGTCAGAGATCATGAAGGATAGAGAC 59.283 42.308 0.00 1.48 0.00 3.36
5 6 6.851318 AGTCAGAGATCATGAAGGATAGAGA 58.149 40.000 0.00 0.00 0.00 3.10
6 7 8.634335 TTAGTCAGAGATCATGAAGGATAGAG 57.366 38.462 0.00 0.00 0.00 2.43
7 8 9.599056 ATTTAGTCAGAGATCATGAAGGATAGA 57.401 33.333 0.00 0.00 0.00 1.98
10 11 9.339850 CAAATTTAGTCAGAGATCATGAAGGAT 57.660 33.333 0.00 0.00 0.00 3.24
11 12 8.542926 TCAAATTTAGTCAGAGATCATGAAGGA 58.457 33.333 0.00 0.00 0.00 3.36
12 13 8.728337 TCAAATTTAGTCAGAGATCATGAAGG 57.272 34.615 0.00 0.00 0.00 3.46
14 15 9.730705 ACTTCAAATTTAGTCAGAGATCATGAA 57.269 29.630 0.00 0.00 0.00 2.57
15 16 9.376075 GACTTCAAATTTAGTCAGAGATCATGA 57.624 33.333 13.82 0.00 40.35 3.07
16 17 9.381033 AGACTTCAAATTTAGTCAGAGATCATG 57.619 33.333 18.78 0.00 42.51 3.07
17 18 9.598517 GAGACTTCAAATTTAGTCAGAGATCAT 57.401 33.333 18.78 1.12 42.51 2.45
18 19 8.588472 TGAGACTTCAAATTTAGTCAGAGATCA 58.412 33.333 18.78 12.16 42.51 2.92
19 20 8.994429 TGAGACTTCAAATTTAGTCAGAGATC 57.006 34.615 18.78 10.33 42.51 2.75
20 21 8.592809 ACTGAGACTTCAAATTTAGTCAGAGAT 58.407 33.333 18.78 2.84 42.51 2.75
21 22 7.957002 ACTGAGACTTCAAATTTAGTCAGAGA 58.043 34.615 18.78 0.00 42.51 3.10
22 23 8.494347 CAACTGAGACTTCAAATTTAGTCAGAG 58.506 37.037 18.78 15.63 42.51 3.35
23 24 8.204160 TCAACTGAGACTTCAAATTTAGTCAGA 58.796 33.333 18.78 7.50 42.51 3.27
24 25 8.370493 TCAACTGAGACTTCAAATTTAGTCAG 57.630 34.615 18.78 12.97 42.51 3.51
25 26 8.908786 ATCAACTGAGACTTCAAATTTAGTCA 57.091 30.769 18.78 4.01 42.51 3.41
27 28 9.442047 CCTATCAACTGAGACTTCAAATTTAGT 57.558 33.333 0.00 0.00 31.69 2.24
28 29 9.658799 TCCTATCAACTGAGACTTCAAATTTAG 57.341 33.333 0.00 0.00 31.69 1.85
30 31 9.171877 GATCCTATCAACTGAGACTTCAAATTT 57.828 33.333 0.00 0.00 31.69 1.82
31 32 8.547173 AGATCCTATCAACTGAGACTTCAAATT 58.453 33.333 0.00 0.00 31.69 1.82
32 33 8.088463 AGATCCTATCAACTGAGACTTCAAAT 57.912 34.615 0.00 0.00 31.69 2.32
33 34 7.487822 AGATCCTATCAACTGAGACTTCAAA 57.512 36.000 0.00 0.00 31.69 2.69
34 35 7.487822 AAGATCCTATCAACTGAGACTTCAA 57.512 36.000 0.00 0.00 31.69 2.69
35 36 8.595362 TTAAGATCCTATCAACTGAGACTTCA 57.405 34.615 0.00 0.00 0.00 3.02
36 37 9.308318 GTTTAAGATCCTATCAACTGAGACTTC 57.692 37.037 0.00 0.00 0.00 3.01
37 38 8.816894 TGTTTAAGATCCTATCAACTGAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
38 39 8.367660 TGTTTAAGATCCTATCAACTGAGACT 57.632 34.615 0.00 0.00 0.00 3.24
55 56 8.957466 TCGAGTCAAGAGATCTTATGTTTAAGA 58.043 33.333 0.00 0.00 45.95 2.10
56 57 9.574458 TTCGAGTCAAGAGATCTTATGTTTAAG 57.426 33.333 0.00 0.00 36.87 1.85
57 58 9.355215 GTTCGAGTCAAGAGATCTTATGTTTAA 57.645 33.333 0.00 0.00 34.28 1.52
58 59 8.520351 TGTTCGAGTCAAGAGATCTTATGTTTA 58.480 33.333 0.00 0.00 34.28 2.01
59 60 7.329717 GTGTTCGAGTCAAGAGATCTTATGTTT 59.670 37.037 0.00 0.00 34.28 2.83
60 61 6.809196 GTGTTCGAGTCAAGAGATCTTATGTT 59.191 38.462 0.00 0.00 34.28 2.71
61 62 6.151985 AGTGTTCGAGTCAAGAGATCTTATGT 59.848 38.462 0.00 0.00 34.28 2.29
62 63 6.559810 AGTGTTCGAGTCAAGAGATCTTATG 58.440 40.000 0.00 0.00 34.28 1.90
63 64 6.767524 AGTGTTCGAGTCAAGAGATCTTAT 57.232 37.500 0.00 0.00 34.28 1.73
64 65 7.867305 ATAGTGTTCGAGTCAAGAGATCTTA 57.133 36.000 0.00 0.00 34.28 2.10
65 66 6.767524 ATAGTGTTCGAGTCAAGAGATCTT 57.232 37.500 0.00 0.00 36.45 2.40
66 67 7.011950 CAGTATAGTGTTCGAGTCAAGAGATCT 59.988 40.741 0.00 0.00 0.00 2.75
67 68 7.129622 CAGTATAGTGTTCGAGTCAAGAGATC 58.870 42.308 0.00 0.00 0.00 2.75
68 69 6.038825 CCAGTATAGTGTTCGAGTCAAGAGAT 59.961 42.308 6.81 0.00 0.00 2.75
69 70 5.354513 CCAGTATAGTGTTCGAGTCAAGAGA 59.645 44.000 6.81 0.00 0.00 3.10
70 71 5.354513 TCCAGTATAGTGTTCGAGTCAAGAG 59.645 44.000 6.81 0.00 0.00 2.85
71 72 5.250982 TCCAGTATAGTGTTCGAGTCAAGA 58.749 41.667 6.81 0.00 0.00 3.02
72 73 5.562506 TCCAGTATAGTGTTCGAGTCAAG 57.437 43.478 6.81 0.00 0.00 3.02
73 74 6.152154 TGAATCCAGTATAGTGTTCGAGTCAA 59.848 38.462 10.89 0.29 0.00 3.18
74 75 5.650703 TGAATCCAGTATAGTGTTCGAGTCA 59.349 40.000 6.81 8.58 0.00 3.41
75 76 6.132791 TGAATCCAGTATAGTGTTCGAGTC 57.867 41.667 6.81 6.37 0.00 3.36
76 77 6.507900 CATGAATCCAGTATAGTGTTCGAGT 58.492 40.000 6.81 0.00 0.00 4.18
77 78 5.403766 GCATGAATCCAGTATAGTGTTCGAG 59.596 44.000 6.81 3.46 0.00 4.04
78 79 5.069119 AGCATGAATCCAGTATAGTGTTCGA 59.931 40.000 6.81 0.00 0.00 3.71
79 80 5.292765 AGCATGAATCCAGTATAGTGTTCG 58.707 41.667 6.81 0.00 0.00 3.95
80 81 5.698545 GGAGCATGAATCCAGTATAGTGTTC 59.301 44.000 11.46 5.59 36.79 3.18
81 82 5.130975 TGGAGCATGAATCCAGTATAGTGTT 59.869 40.000 14.32 0.00 41.96 3.32
82 83 4.655649 TGGAGCATGAATCCAGTATAGTGT 59.344 41.667 14.32 0.00 41.96 3.55
83 84 5.219343 TGGAGCATGAATCCAGTATAGTG 57.781 43.478 14.32 0.09 41.96 2.74
91 92 1.355381 ACTGGTTGGAGCATGAATCCA 59.645 47.619 14.32 14.32 45.15 3.41
92 93 2.134789 ACTGGTTGGAGCATGAATCC 57.865 50.000 9.82 9.82 37.35 3.01
93 94 2.821969 ACAACTGGTTGGAGCATGAATC 59.178 45.455 16.33 0.00 44.45 2.52
94 95 2.880443 ACAACTGGTTGGAGCATGAAT 58.120 42.857 16.33 0.00 44.45 2.57
95 96 2.363306 ACAACTGGTTGGAGCATGAA 57.637 45.000 16.33 0.00 44.45 2.57
96 97 2.363306 AACAACTGGTTGGAGCATGA 57.637 45.000 16.33 0.00 44.45 3.07
97 98 3.457610 AAAACAACTGGTTGGAGCATG 57.542 42.857 16.33 0.00 44.45 4.06
98 99 5.806654 ATAAAAACAACTGGTTGGAGCAT 57.193 34.783 16.33 3.34 44.45 3.79
99 100 5.127845 TGAATAAAAACAACTGGTTGGAGCA 59.872 36.000 16.33 0.46 44.45 4.26
100 101 5.596845 TGAATAAAAACAACTGGTTGGAGC 58.403 37.500 16.33 0.00 44.45 4.70
101 102 8.576442 AGTATGAATAAAAACAACTGGTTGGAG 58.424 33.333 16.33 0.00 44.45 3.86
102 103 8.472007 AGTATGAATAAAAACAACTGGTTGGA 57.528 30.769 16.33 0.00 44.45 3.53
130 131 9.214957 CCTCTACATTTGCGGTCATATTATTAA 57.785 33.333 0.00 0.00 0.00 1.40
131 132 7.333423 GCCTCTACATTTGCGGTCATATTATTA 59.667 37.037 0.00 0.00 0.00 0.98
132 133 6.149474 GCCTCTACATTTGCGGTCATATTATT 59.851 38.462 0.00 0.00 0.00 1.40
133 134 5.643777 GCCTCTACATTTGCGGTCATATTAT 59.356 40.000 0.00 0.00 0.00 1.28
134 135 4.994852 GCCTCTACATTTGCGGTCATATTA 59.005 41.667 0.00 0.00 0.00 0.98
135 136 3.815401 GCCTCTACATTTGCGGTCATATT 59.185 43.478 0.00 0.00 0.00 1.28
136 137 3.403038 GCCTCTACATTTGCGGTCATAT 58.597 45.455 0.00 0.00 0.00 1.78
137 138 2.484770 GGCCTCTACATTTGCGGTCATA 60.485 50.000 0.00 0.00 0.00 2.15
138 139 1.668419 GCCTCTACATTTGCGGTCAT 58.332 50.000 0.00 0.00 0.00 3.06
139 140 0.392461 GGCCTCTACATTTGCGGTCA 60.392 55.000 0.00 0.00 0.00 4.02
140 141 0.392461 TGGCCTCTACATTTGCGGTC 60.392 55.000 3.32 0.00 0.00 4.79
141 142 0.392998 CTGGCCTCTACATTTGCGGT 60.393 55.000 3.32 0.00 0.00 5.68
142 143 1.097547 CCTGGCCTCTACATTTGCGG 61.098 60.000 3.32 0.00 0.00 5.69
143 144 1.097547 CCCTGGCCTCTACATTTGCG 61.098 60.000 3.32 0.00 0.00 4.85
144 145 0.753111 CCCCTGGCCTCTACATTTGC 60.753 60.000 3.32 0.00 0.00 3.68
145 146 0.625849 ACCCCTGGCCTCTACATTTG 59.374 55.000 3.32 0.00 0.00 2.32
146 147 0.625849 CACCCCTGGCCTCTACATTT 59.374 55.000 3.32 0.00 0.00 2.32
147 148 0.253160 TCACCCCTGGCCTCTACATT 60.253 55.000 3.32 0.00 0.00 2.71
148 149 0.692419 CTCACCCCTGGCCTCTACAT 60.692 60.000 3.32 0.00 0.00 2.29
149 150 1.306141 CTCACCCCTGGCCTCTACA 60.306 63.158 3.32 0.00 0.00 2.74
150 151 2.736826 GCTCACCCCTGGCCTCTAC 61.737 68.421 3.32 0.00 0.00 2.59
151 152 2.365635 GCTCACCCCTGGCCTCTA 60.366 66.667 3.32 0.00 0.00 2.43
157 158 1.793820 AAAAGGAGGCTCACCCCTGG 61.794 60.000 17.69 0.00 36.89 4.45
158 159 0.322906 GAAAAGGAGGCTCACCCCTG 60.323 60.000 17.69 0.00 36.89 4.45
159 160 1.501654 GGAAAAGGAGGCTCACCCCT 61.502 60.000 17.69 1.07 38.02 4.79
160 161 1.000771 GGAAAAGGAGGCTCACCCC 60.001 63.158 17.69 5.92 36.11 4.95
161 162 0.332972 ATGGAAAAGGAGGCTCACCC 59.667 55.000 17.69 9.51 36.11 4.61
162 163 2.222227 AATGGAAAAGGAGGCTCACC 57.778 50.000 17.69 11.14 0.00 4.02
163 164 4.607293 AAAAATGGAAAAGGAGGCTCAC 57.393 40.909 17.69 5.85 0.00 3.51
185 186 4.707448 TGAAGTAACTGGTTGGAGCAAAAA 59.293 37.500 0.00 0.00 0.00 1.94
186 187 4.274147 TGAAGTAACTGGTTGGAGCAAAA 58.726 39.130 0.00 0.00 0.00 2.44
187 188 3.892284 TGAAGTAACTGGTTGGAGCAAA 58.108 40.909 0.00 0.00 0.00 3.68
188 189 3.569194 TGAAGTAACTGGTTGGAGCAA 57.431 42.857 0.00 0.00 0.00 3.91
193 194 5.009210 TCCGAATTTTGAAGTAACTGGTTGG 59.991 40.000 0.00 0.00 0.00 3.77
197 198 7.367285 TCAATTCCGAATTTTGAAGTAACTGG 58.633 34.615 3.48 0.00 0.00 4.00
200 201 8.964420 TCATCAATTCCGAATTTTGAAGTAAC 57.036 30.769 3.48 0.00 33.45 2.50
204 205 7.809331 TGTCTTCATCAATTCCGAATTTTGAAG 59.191 33.333 27.98 27.98 42.68 3.02
205 206 7.656412 TGTCTTCATCAATTCCGAATTTTGAA 58.344 30.769 18.91 18.91 33.45 2.69
207 208 7.463648 GCATGTCTTCATCAATTCCGAATTTTG 60.464 37.037 3.48 5.62 31.15 2.44
218 219 6.600427 TGTATTGTCTGCATGTCTTCATCAAT 59.400 34.615 0.00 0.00 32.35 2.57
219 220 5.939296 TGTATTGTCTGCATGTCTTCATCAA 59.061 36.000 0.00 0.00 31.15 2.57
221 222 6.615264 ATGTATTGTCTGCATGTCTTCATC 57.385 37.500 0.00 0.00 31.15 2.92
261 262 8.569641 CGTCTAAGTCTAAATAAGCCTAGATGT 58.430 37.037 0.00 0.00 0.00 3.06
311 312 5.302360 ACCTTGTCAACGCAGTATTAGAAA 58.698 37.500 0.00 0.00 45.00 2.52
313 314 4.219944 AGACCTTGTCAACGCAGTATTAGA 59.780 41.667 0.00 0.00 45.00 2.10
314 315 4.495422 AGACCTTGTCAACGCAGTATTAG 58.505 43.478 0.00 0.00 45.00 1.73
315 316 4.530710 AGACCTTGTCAACGCAGTATTA 57.469 40.909 0.00 0.00 45.00 0.98
316 317 3.402628 AGACCTTGTCAACGCAGTATT 57.597 42.857 0.00 0.00 45.00 1.89
320 321 4.035208 AGTTTAAAGACCTTGTCAACGCAG 59.965 41.667 0.00 0.00 34.60 5.18
329 330 4.145052 AGGCCTCAAGTTTAAAGACCTTG 58.855 43.478 0.00 9.63 0.00 3.61
331 332 3.653352 AGAGGCCTCAAGTTTAAAGACCT 59.347 43.478 33.90 5.49 0.00 3.85
348 349 7.461182 AGACATAGTATCATAGTCAAGAGGC 57.539 40.000 0.00 0.00 0.00 4.70
352 353 8.743714 TGCCATAGACATAGTATCATAGTCAAG 58.256 37.037 0.00 0.00 0.00 3.02
353 354 8.523658 GTGCCATAGACATAGTATCATAGTCAA 58.476 37.037 0.00 0.00 0.00 3.18
354 355 7.669722 TGTGCCATAGACATAGTATCATAGTCA 59.330 37.037 0.00 0.00 0.00 3.41
355 356 8.056407 TGTGCCATAGACATAGTATCATAGTC 57.944 38.462 0.00 0.00 0.00 2.59
356 357 8.601047 ATGTGCCATAGACATAGTATCATAGT 57.399 34.615 0.00 0.00 32.12 2.12
357 358 8.911965 AGATGTGCCATAGACATAGTATCATAG 58.088 37.037 0.00 0.00 34.10 2.23
358 359 8.829373 AGATGTGCCATAGACATAGTATCATA 57.171 34.615 0.00 0.00 34.10 2.15
359 360 7.730672 AGATGTGCCATAGACATAGTATCAT 57.269 36.000 0.00 0.00 34.10 2.45
360 361 8.650143 TTAGATGTGCCATAGACATAGTATCA 57.350 34.615 0.00 0.00 34.10 2.15
362 363 9.881649 CATTTAGATGTGCCATAGACATAGTAT 57.118 33.333 0.00 0.00 34.10 2.12
363 364 8.870116 ACATTTAGATGTGCCATAGACATAGTA 58.130 33.333 0.00 0.00 44.64 1.82
364 365 7.739825 ACATTTAGATGTGCCATAGACATAGT 58.260 34.615 0.00 0.00 44.64 2.12
379 380 6.262944 TGCAATAACTAGGGCACATTTAGATG 59.737 38.462 0.00 0.00 39.25 2.90
380 381 6.364701 TGCAATAACTAGGGCACATTTAGAT 58.635 36.000 0.00 0.00 0.00 1.98
381 382 5.750524 TGCAATAACTAGGGCACATTTAGA 58.249 37.500 0.00 0.00 0.00 2.10
382 383 6.639632 ATGCAATAACTAGGGCACATTTAG 57.360 37.500 0.00 0.00 39.34 1.85
383 384 8.704849 AATATGCAATAACTAGGGCACATTTA 57.295 30.769 0.00 0.00 39.34 1.40
384 385 7.601705 AATATGCAATAACTAGGGCACATTT 57.398 32.000 0.00 0.00 39.34 2.32
385 386 7.601705 AAATATGCAATAACTAGGGCACATT 57.398 32.000 0.00 0.00 39.34 2.71
386 387 8.704849 TTAAATATGCAATAACTAGGGCACAT 57.295 30.769 0.00 0.00 39.34 3.21
387 388 7.777910 ACTTAAATATGCAATAACTAGGGCACA 59.222 33.333 0.00 0.00 39.34 4.57
388 389 8.076178 CACTTAAATATGCAATAACTAGGGCAC 58.924 37.037 0.00 0.00 39.34 5.01
389 390 7.230510 CCACTTAAATATGCAATAACTAGGGCA 59.769 37.037 0.00 0.00 41.00 5.36
390 391 7.593825 CCACTTAAATATGCAATAACTAGGGC 58.406 38.462 0.00 0.00 29.06 5.19
391 392 7.448469 AGCCACTTAAATATGCAATAACTAGGG 59.552 37.037 0.00 0.00 29.06 3.53
392 393 8.396272 AGCCACTTAAATATGCAATAACTAGG 57.604 34.615 0.00 0.00 29.06 3.02
393 394 9.056005 TGAGCCACTTAAATATGCAATAACTAG 57.944 33.333 0.00 0.00 29.06 2.57
394 395 8.972458 TGAGCCACTTAAATATGCAATAACTA 57.028 30.769 0.00 0.00 29.06 2.24
395 396 7.880160 TGAGCCACTTAAATATGCAATAACT 57.120 32.000 0.00 0.00 29.06 2.24
396 397 9.185192 GATTGAGCCACTTAAATATGCAATAAC 57.815 33.333 0.00 0.00 29.06 1.89
397 398 8.911965 TGATTGAGCCACTTAAATATGCAATAA 58.088 29.630 0.00 0.00 29.06 1.40
398 399 8.462589 TGATTGAGCCACTTAAATATGCAATA 57.537 30.769 0.00 0.00 0.00 1.90
399 400 7.350744 TGATTGAGCCACTTAAATATGCAAT 57.649 32.000 0.00 0.00 0.00 3.56
400 401 6.772360 TGATTGAGCCACTTAAATATGCAA 57.228 33.333 0.00 0.00 0.00 4.08
401 402 6.772360 TTGATTGAGCCACTTAAATATGCA 57.228 33.333 0.00 0.00 0.00 3.96
402 403 7.260603 AGTTTGATTGAGCCACTTAAATATGC 58.739 34.615 0.00 0.00 0.00 3.14
403 404 9.941664 CTAGTTTGATTGAGCCACTTAAATATG 57.058 33.333 0.00 0.00 0.00 1.78
404 405 9.905713 TCTAGTTTGATTGAGCCACTTAAATAT 57.094 29.630 0.00 0.00 0.00 1.28
405 406 9.733556 TTCTAGTTTGATTGAGCCACTTAAATA 57.266 29.630 0.00 0.00 0.00 1.40
406 407 8.635765 TTCTAGTTTGATTGAGCCACTTAAAT 57.364 30.769 0.00 0.00 0.00 1.40
407 408 8.458573 TTTCTAGTTTGATTGAGCCACTTAAA 57.541 30.769 0.00 0.00 0.00 1.52
408 409 7.174946 CCTTTCTAGTTTGATTGAGCCACTTAA 59.825 37.037 0.00 0.00 0.00 1.85
409 410 6.655003 CCTTTCTAGTTTGATTGAGCCACTTA 59.345 38.462 0.00 0.00 0.00 2.24
410 411 5.474876 CCTTTCTAGTTTGATTGAGCCACTT 59.525 40.000 0.00 0.00 0.00 3.16
411 412 5.006386 CCTTTCTAGTTTGATTGAGCCACT 58.994 41.667 0.00 0.00 0.00 4.00
412 413 5.003804 TCCTTTCTAGTTTGATTGAGCCAC 58.996 41.667 0.00 0.00 0.00 5.01
413 414 5.241403 TCCTTTCTAGTTTGATTGAGCCA 57.759 39.130 0.00 0.00 0.00 4.75
414 415 6.575162 TTTCCTTTCTAGTTTGATTGAGCC 57.425 37.500 0.00 0.00 0.00 4.70
437 438 7.823799 TGCAAACATTTTCTTTCCTCTCTTTTT 59.176 29.630 0.00 0.00 0.00 1.94
438 439 7.278646 GTGCAAACATTTTCTTTCCTCTCTTTT 59.721 33.333 0.00 0.00 0.00 2.27
439 440 6.758416 GTGCAAACATTTTCTTTCCTCTCTTT 59.242 34.615 0.00 0.00 0.00 2.52
440 441 6.127366 TGTGCAAACATTTTCTTTCCTCTCTT 60.127 34.615 0.00 0.00 0.00 2.85
441 442 5.360714 TGTGCAAACATTTTCTTTCCTCTCT 59.639 36.000 0.00 0.00 0.00 3.10
442 443 5.591099 TGTGCAAACATTTTCTTTCCTCTC 58.409 37.500 0.00 0.00 0.00 3.20
443 444 5.596836 TGTGCAAACATTTTCTTTCCTCT 57.403 34.783 0.00 0.00 0.00 3.69
444 445 6.660887 TTTGTGCAAACATTTTCTTTCCTC 57.339 33.333 0.00 0.00 0.00 3.71
445 446 7.049754 AGATTTGTGCAAACATTTTCTTTCCT 58.950 30.769 0.00 0.00 32.51 3.36
446 447 7.225341 AGAGATTTGTGCAAACATTTTCTTTCC 59.775 33.333 0.00 0.00 32.51 3.13
447 448 8.060090 CAGAGATTTGTGCAAACATTTTCTTTC 58.940 33.333 0.00 0.00 32.51 2.62
448 449 7.550196 ACAGAGATTTGTGCAAACATTTTCTTT 59.450 29.630 0.00 0.00 32.51 2.52
449 450 7.010738 CACAGAGATTTGTGCAAACATTTTCTT 59.989 33.333 0.00 0.00 41.65 2.52
450 451 6.477688 CACAGAGATTTGTGCAAACATTTTCT 59.522 34.615 0.00 0.00 41.65 2.52
451 452 6.642917 CACAGAGATTTGTGCAAACATTTTC 58.357 36.000 0.00 0.00 41.65 2.29
452 453 6.592798 CACAGAGATTTGTGCAAACATTTT 57.407 33.333 0.00 0.00 41.65 1.82
463 464 8.641498 ATCCTTGATTTTACACAGAGATTTGT 57.359 30.769 0.00 0.00 0.00 2.83
467 468 9.775854 CTCATATCCTTGATTTTACACAGAGAT 57.224 33.333 0.00 0.00 0.00 2.75
468 469 8.981659 TCTCATATCCTTGATTTTACACAGAGA 58.018 33.333 0.00 0.00 0.00 3.10
469 470 9.039870 GTCTCATATCCTTGATTTTACACAGAG 57.960 37.037 0.00 0.00 0.00 3.35
470 471 8.762645 AGTCTCATATCCTTGATTTTACACAGA 58.237 33.333 0.00 0.00 0.00 3.41
471 472 8.954950 AGTCTCATATCCTTGATTTTACACAG 57.045 34.615 0.00 0.00 0.00 3.66
478 479 9.775854 CACATCTAAGTCTCATATCCTTGATTT 57.224 33.333 0.00 0.00 0.00 2.17
479 480 7.877097 GCACATCTAAGTCTCATATCCTTGATT 59.123 37.037 0.00 0.00 0.00 2.57
480 481 7.015974 TGCACATCTAAGTCTCATATCCTTGAT 59.984 37.037 0.00 0.00 0.00 2.57
481 482 6.324770 TGCACATCTAAGTCTCATATCCTTGA 59.675 38.462 0.00 0.00 0.00 3.02
482 483 6.519382 TGCACATCTAAGTCTCATATCCTTG 58.481 40.000 0.00 0.00 0.00 3.61
483 484 6.737720 TGCACATCTAAGTCTCATATCCTT 57.262 37.500 0.00 0.00 0.00 3.36
484 485 6.737720 TTGCACATCTAAGTCTCATATCCT 57.262 37.500 0.00 0.00 0.00 3.24
485 486 8.310382 AGTATTGCACATCTAAGTCTCATATCC 58.690 37.037 0.00 0.00 0.00 2.59
486 487 9.703892 AAGTATTGCACATCTAAGTCTCATATC 57.296 33.333 0.00 0.00 0.00 1.63
489 490 8.147058 CCTAAGTATTGCACATCTAAGTCTCAT 58.853 37.037 0.00 0.00 0.00 2.90
490 491 7.342026 TCCTAAGTATTGCACATCTAAGTCTCA 59.658 37.037 0.00 0.00 0.00 3.27
491 492 7.650104 GTCCTAAGTATTGCACATCTAAGTCTC 59.350 40.741 0.00 0.00 0.00 3.36
492 493 7.124298 TGTCCTAAGTATTGCACATCTAAGTCT 59.876 37.037 0.00 0.00 0.00 3.24
493 494 7.222999 GTGTCCTAAGTATTGCACATCTAAGTC 59.777 40.741 0.00 0.00 0.00 3.01
494 495 7.042335 GTGTCCTAAGTATTGCACATCTAAGT 58.958 38.462 0.00 0.00 0.00 2.24
495 496 7.041721 TGTGTCCTAAGTATTGCACATCTAAG 58.958 38.462 0.00 0.00 32.79 2.18
496 497 6.941857 TGTGTCCTAAGTATTGCACATCTAA 58.058 36.000 0.00 0.00 32.79 2.10
497 498 6.538945 TGTGTCCTAAGTATTGCACATCTA 57.461 37.500 0.00 0.00 32.79 1.98
498 499 5.420725 TGTGTCCTAAGTATTGCACATCT 57.579 39.130 0.00 0.00 32.79 2.90
500 501 5.994250 AGATGTGTCCTAAGTATTGCACAT 58.006 37.500 7.56 7.56 46.19 3.21
501 502 5.420725 AGATGTGTCCTAAGTATTGCACA 57.579 39.130 0.00 0.00 40.42 4.57
502 503 6.806751 TCTAGATGTGTCCTAAGTATTGCAC 58.193 40.000 0.00 0.00 0.00 4.57
503 504 7.436933 CATCTAGATGTGTCCTAAGTATTGCA 58.563 38.462 22.42 0.00 34.23 4.08
504 505 7.881643 CATCTAGATGTGTCCTAAGTATTGC 57.118 40.000 22.42 0.00 34.23 3.56
535 536 9.143631 GAAGCATGAATTTAATACAGTTTTGCT 57.856 29.630 0.00 0.00 37.15 3.91
536 537 8.924691 TGAAGCATGAATTTAATACAGTTTTGC 58.075 29.630 0.00 0.00 0.00 3.68
538 539 9.143631 GCTGAAGCATGAATTTAATACAGTTTT 57.856 29.630 0.00 0.00 41.59 2.43
539 540 7.761249 GGCTGAAGCATGAATTTAATACAGTTT 59.239 33.333 4.43 0.00 44.36 2.66
540 541 7.093814 TGGCTGAAGCATGAATTTAATACAGTT 60.094 33.333 4.43 0.00 44.36 3.16
544 545 6.476706 GGTTGGCTGAAGCATGAATTTAATAC 59.523 38.462 4.43 0.00 44.36 1.89
553 554 0.040058 ATGGGTTGGCTGAAGCATGA 59.960 50.000 4.43 0.00 44.36 3.07
564 565 5.296748 AGTTTCGATTTTTGAATGGGTTGG 58.703 37.500 0.00 0.00 0.00 3.77
565 566 6.843069 AAGTTTCGATTTTTGAATGGGTTG 57.157 33.333 0.00 0.00 0.00 3.77
580 581 4.996122 TCTGCCCGTTTTTATAAGTTTCGA 59.004 37.500 0.00 0.00 0.00 3.71
588 589 8.836268 AAATATATCGTCTGCCCGTTTTTATA 57.164 30.769 0.00 0.00 0.00 0.98
597 598 4.213482 GGTGTTGAAATATATCGTCTGCCC 59.787 45.833 0.00 0.00 0.00 5.36
629 630 2.221055 GTGCTGTTGACAGTTAACCTCG 59.779 50.000 12.32 0.00 45.45 4.63
684 685 5.118990 TCTTCAGAAAGACAGACACAAAGG 58.881 41.667 0.00 0.00 36.59 3.11
699 700 4.517285 GCTCTCTCTCTCTCTCTTCAGAA 58.483 47.826 0.00 0.00 0.00 3.02
729 730 1.396648 TCCAAATTATCACACAGCGCG 59.603 47.619 0.00 0.00 0.00 6.86
731 732 2.419673 TGCTCCAAATTATCACACAGCG 59.580 45.455 0.00 0.00 0.00 5.18
800 817 6.129168 GCTCAATATCGTATTAGTGGTTGACG 60.129 42.308 0.00 0.00 34.90 4.35
975 997 1.469079 GCAGAGAGAAGAGGAACGAGC 60.469 57.143 0.00 0.00 0.00 5.03
981 1003 0.975040 GGCTGGCAGAGAGAAGAGGA 60.975 60.000 20.86 0.00 0.00 3.71
1037 1064 1.078848 AGATGCAACAGACGAGCCC 60.079 57.895 0.00 0.00 0.00 5.19
1208 1251 2.680841 CAAACTGAACACTTTGTCCCGA 59.319 45.455 0.00 0.00 0.00 5.14
1210 1253 2.427095 AGCAAACTGAACACTTTGTCCC 59.573 45.455 0.00 0.00 31.20 4.46
1406 1474 4.932200 CCTCGTAAGCACAAGAAGAAGATT 59.068 41.667 0.00 0.00 37.18 2.40
1442 1517 0.250252 TGTCACGCCTGCAGAATTGA 60.250 50.000 17.39 11.02 0.00 2.57
1504 1579 2.875485 CGTGATCGGGTCGACACT 59.125 61.111 17.19 0.00 39.18 3.55
1506 1581 3.060000 AGCGTGATCGGGTCGACA 61.060 61.111 18.91 0.00 39.18 4.35
1608 1683 4.657824 CCGTACCCATAGGCGGCG 62.658 72.222 0.51 0.51 37.69 6.46
1612 1687 4.982749 GGCGCCGTACCCATAGGC 62.983 72.222 12.58 0.00 46.88 3.93
1613 1688 4.657824 CGGCGCCGTACCCATAGG 62.658 72.222 39.71 8.63 35.17 2.57
1614 1689 4.657824 CCGGCGCCGTACCCATAG 62.658 72.222 43.12 24.12 37.81 2.23
1722 1929 1.142097 GTTCTGAGAGTAGCCGCCC 59.858 63.158 0.00 0.00 0.00 6.13
1767 1974 2.293677 TGGCGTTGTACTGCTGATAG 57.706 50.000 0.00 0.00 0.00 2.08
1817 2024 1.072015 GCTGATAAGCAGGAGGAGCAT 59.928 52.381 0.00 0.00 45.03 3.79
1839 2046 0.541863 AGCCGGTATCCTGTTCTTGG 59.458 55.000 1.90 0.00 0.00 3.61
1852 2059 0.180171 TACATAATGCTGCAGCCGGT 59.820 50.000 34.64 24.70 41.18 5.28
1884 2108 7.168219 TCTCCTTAACTAACAACTACGGAGTA 58.832 38.462 0.00 0.00 45.11 2.59
1886 2110 6.373774 TCTCTCCTTAACTAACAACTACGGAG 59.626 42.308 0.00 0.00 34.13 4.63
1887 2111 6.240894 TCTCTCCTTAACTAACAACTACGGA 58.759 40.000 0.00 0.00 0.00 4.69
1888 2112 6.506500 TCTCTCCTTAACTAACAACTACGG 57.493 41.667 0.00 0.00 0.00 4.02
1889 2113 7.759465 TCATCTCTCCTTAACTAACAACTACG 58.241 38.462 0.00 0.00 0.00 3.51
1917 2141 2.086251 CTCCTGATCTCTCGCCAGCC 62.086 65.000 0.00 0.00 0.00 4.85
1920 2144 0.257328 ACTCTCCTGATCTCTCGCCA 59.743 55.000 0.00 0.00 0.00 5.69
2017 2248 0.108138 ATACGGTGCTTCTCAGTGCC 60.108 55.000 0.00 0.00 0.00 5.01
2026 2257 3.119245 CCTGTACTGTACATACGGTGCTT 60.119 47.826 19.99 0.00 44.96 3.91
2029 2260 4.171005 CAACCTGTACTGTACATACGGTG 58.829 47.826 23.17 17.13 44.92 4.94
2088 2341 9.627123 CCTTTTATTCATTCCTCCTGTACAATA 57.373 33.333 0.00 0.00 0.00 1.90
2162 2445 2.988549 GCATCTCGCGCCGTATTCG 61.989 63.158 0.00 0.00 0.00 3.34
2163 2446 1.284982 ATGCATCTCGCGCCGTATTC 61.285 55.000 0.00 0.00 46.97 1.75
2164 2447 1.284982 GATGCATCTCGCGCCGTATT 61.285 55.000 19.70 0.00 46.97 1.89
2197 2480 6.767902 TGGAGATGCTTTTAGGCAGTTATAAG 59.232 38.462 0.00 0.00 45.75 1.73
2198 2481 6.658849 TGGAGATGCTTTTAGGCAGTTATAA 58.341 36.000 0.00 0.00 45.75 0.98
2200 2483 5.116084 TGGAGATGCTTTTAGGCAGTTAT 57.884 39.130 0.00 0.00 45.75 1.89
2207 2492 3.084039 TGCTGTTGGAGATGCTTTTAGG 58.916 45.455 0.00 0.00 0.00 2.69
2240 2525 0.314935 TCTAAAAACGACCGACGCCT 59.685 50.000 0.00 0.00 46.94 5.52
2247 2532 3.865224 TTTCGTGCTCTAAAAACGACC 57.135 42.857 0.00 0.00 45.20 4.79
2331 2646 0.250945 GCCTCTATTTAGGGCTGCCC 60.251 60.000 30.57 30.57 45.90 5.36
2344 2659 2.829003 CCGCACGAGGAGCCTCTA 60.829 66.667 14.19 0.00 40.69 2.43
2366 2681 1.068333 CATCCACCGAAGTGCCAAAAG 60.068 52.381 0.00 0.00 43.09 2.27
2369 2684 0.605319 GACATCCACCGAAGTGCCAA 60.605 55.000 0.00 0.00 43.09 4.52
2370 2685 1.003839 GACATCCACCGAAGTGCCA 60.004 57.895 0.00 0.00 43.09 4.92
2381 2696 2.553028 GCCTCACTTCTTTGGACATCCA 60.553 50.000 0.00 0.00 45.94 3.41
2387 2702 0.767375 AGCAGCCTCACTTCTTTGGA 59.233 50.000 0.00 0.00 0.00 3.53
2393 2708 1.743252 CCCGAAGCAGCCTCACTTC 60.743 63.158 0.00 0.00 39.13 3.01
2395 2710 2.604686 TCCCGAAGCAGCCTCACT 60.605 61.111 0.00 0.00 0.00 3.41
2408 2723 1.421410 GACTGCATACAAGCGTCCCG 61.421 60.000 0.00 0.00 37.31 5.14
2409 2724 1.421410 CGACTGCATACAAGCGTCCC 61.421 60.000 0.00 0.00 35.87 4.46
2416 2731 3.071479 GAGGGTTTTCGACTGCATACAA 58.929 45.455 0.00 0.00 0.00 2.41
2419 2734 1.404986 CCGAGGGTTTTCGACTGCATA 60.405 52.381 0.00 0.00 43.03 3.14
2424 2739 0.535797 GGATCCGAGGGTTTTCGACT 59.464 55.000 0.00 0.00 43.03 4.18
2429 2744 2.271173 GGCGGATCCGAGGGTTTT 59.729 61.111 37.64 0.00 42.83 2.43
2462 2777 2.515523 GAGCCAGCCATGATGCGT 60.516 61.111 0.00 0.00 36.02 5.24
2554 2870 2.296073 TTTTGGGCACGAAATAGGGT 57.704 45.000 0.00 0.00 35.65 4.34
2555 2871 3.885724 ATTTTTGGGCACGAAATAGGG 57.114 42.857 1.20 0.00 35.65 3.53
2559 2875 5.066968 ACGATTATTTTTGGGCACGAAAT 57.933 34.783 1.20 3.82 35.65 2.17
2560 2876 4.506886 ACGATTATTTTTGGGCACGAAA 57.493 36.364 0.00 0.00 33.38 3.46
2575 2944 5.968528 ACAATAGGGCACAAAAACGATTA 57.031 34.783 0.00 0.00 0.00 1.75
2576 2945 4.864704 ACAATAGGGCACAAAAACGATT 57.135 36.364 0.00 0.00 0.00 3.34
2577 2946 5.105917 CCTTACAATAGGGCACAAAAACGAT 60.106 40.000 0.00 0.00 0.00 3.73
2578 2947 4.216687 CCTTACAATAGGGCACAAAAACGA 59.783 41.667 0.00 0.00 0.00 3.85
2579 2948 4.481463 CCTTACAATAGGGCACAAAAACG 58.519 43.478 0.00 0.00 0.00 3.60
2596 2970 2.222445 CCGTGTACAACAACAGCCTTAC 59.778 50.000 0.00 0.00 0.00 2.34
2599 2973 1.164041 GCCGTGTACAACAACAGCCT 61.164 55.000 0.00 0.00 0.00 4.58
2611 2985 2.732016 ACGAGCAAGTGCCGTGTA 59.268 55.556 15.70 0.00 42.88 2.90
2639 3013 1.204467 CATTTGGGGCACATAAACGCT 59.796 47.619 0.00 0.00 0.00 5.07
2646 3021 3.260632 GGAGTAAAACATTTGGGGCACAT 59.739 43.478 0.00 0.00 0.00 3.21
2654 3029 7.306515 CGAAAACATGGTGGAGTAAAACATTTG 60.307 37.037 0.00 0.00 0.00 2.32
2659 3034 4.973663 CACGAAAACATGGTGGAGTAAAAC 59.026 41.667 0.00 0.00 34.41 2.43
2667 3042 1.288752 GGGCACGAAAACATGGTGG 59.711 57.895 0.00 0.00 38.13 4.61
2742 3117 5.627499 TTAGTGCAGCAATTTTCTAGTGG 57.373 39.130 0.00 0.00 0.00 4.00
2748 3123 9.657121 GTCTATTAGATTAGTGCAGCAATTTTC 57.343 33.333 0.00 0.00 0.00 2.29
2750 3125 8.970859 AGTCTATTAGATTAGTGCAGCAATTT 57.029 30.769 0.00 0.00 0.00 1.82
2813 3190 4.298332 GCACTACATTTTTGTCCAACTGG 58.702 43.478 0.00 0.00 0.00 4.00
2840 3217 8.367660 TCTCTGCATATAGGGGAACTTTATAG 57.632 38.462 0.00 0.00 0.00 1.31
2851 3228 7.554118 TCAAGAAACTTTTCTCTGCATATAGGG 59.446 37.037 4.71 0.00 46.22 3.53
2930 3307 3.172229 AGATTAGCTTCTCGACAAGGC 57.828 47.619 2.50 0.00 0.00 4.35
2987 3364 3.476552 ACTTTGAATGGCGTTGAGAGAA 58.523 40.909 3.55 0.00 0.00 2.87
3043 3420 5.877564 CCCAACATACGCCCAAATTTTTAAT 59.122 36.000 0.00 0.00 0.00 1.40
3049 3426 1.822371 GTCCCAACATACGCCCAAATT 59.178 47.619 0.00 0.00 0.00 1.82
3057 3434 4.817517 ACTTTACTGAGTCCCAACATACG 58.182 43.478 0.00 0.00 0.00 3.06
3060 3437 5.690865 TGAAACTTTACTGAGTCCCAACAT 58.309 37.500 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.